HHsearch alignment for GI: 254781004 and conserved domain: pfam01409
>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain.
Probab=91.07 E-value=1.3 Score=24.07 Aligned_cols=111 Identities=18% Similarity=0.289 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHH-CCCEEEECCCCCCC-----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHH
Q ss_conf 78999999999998876-89638555432443-----1000112100125554201001456777823774343125777
Q gi|254781004|r 272 GWKIFQTLISYMRRKIK-DDYEEINTPQVLDQ-----HLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHV 345 (652)
Q Consensus 272 G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~-----~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~ 345 (652)
T Consensus 15 ~~HPi~~~~~~i~~~f~~~GF~~~~g~eves~~~NFDaLn~P~dHPaR~~~DTfy~~~----~~~~~~~vLRtHTS~~q~ 90 (243)
T pfam01409 15 GLHPLTRVLEEIRDIFLSMGFEEVEGPEVESDFYNFDALNIPQDHPARDMQDTFYLKK----PLKARRLLLRTHTTPVQA 90 (243)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECC----CCCCCCEEECCCCCHHHH
T ss_conf 8585999999999999877986876983564277777557898898767676034336----666768657687988999
Q ss_pred HHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEE
Q ss_conf 7652012222310432000100012787645200010563533442101
Q gi|254781004|r 346 AVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF 394 (652)
Q Consensus 346 ~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F 394 (652)
T Consensus 91 r~l~----~~~~~p~r~~~~grvyR~d~~Da----tH~~~FhQ~Eg~vv 131 (243)
T pfam01409 91 RTLA----EKNKPPIKIFSIGRVFRRDQVDA----THLPEFHQVEGLVV 131 (243)
T ss_pred HHHH----HCCCCCEEEECCCEEEECCCCCC----CCCCEEEEEEEEEE
T ss_conf 9997----42799848981431332588984----31531057557896