PSIBLAST alignment of GI: 254781004 and protein with PDB id: 1nj1

>gi|28948883|pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Bound To Cysteine Sulfamoyl Adenylate Length = 501
>gi|28948884|pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Length = 501
 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/406 (13%), Positives = 126/406 (31%), Gaps = 49/406 (12%)

Query: 247 RKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVLDQHLWQ 306
             +  E ++        G+  W   G+ I +  +  +RR +  D+EE+  P ++ +    
Sbjct: 45  HNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDRDHEEVLFPLLVPEDELA 104

Query: 307 QSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFG 366
           +         +           K  R  AL+P +      +F   ++S+ +LP+R  +  
Sbjct: 105 KEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVV 164

Query: 367 SVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVK 426
           + +R E   +   +      T  +AH                                  
Sbjct: 165 NTFRYETKHTRPLIRVREITTFKEAHTIHATASEAE------------------------ 200

Query: 427 LSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDA 486
                          + A  I K   +++                G+ Y   F+ ++ D 
Sbjct: 201 ------------EQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPD- 247

Query: 487 IGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGN- 545
                      +       F   +     +  +   +H+  +G  +R I  +I       
Sbjct: 248 GKTLQIGTVHNLGQTFARTFEIKFETPEGDHEY---VHQTCYGLSDRVIASVIAIHGDES 304

Query: 546 ---LPLWLSPIQAIVTTI-----TSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIRE 597
              LP  ++  Q ++  I         +E  +E+ + L++    +  D R+     K  E
Sbjct: 305 GLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYE 364

Query: 598 HSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTK 643
             ++ +P+ +  G ++  + +  I R  +       L      L +
Sbjct: 365 WEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRE 410