PSIBLAST alignment of GI: 254781004 and protein with PDB id: 1nj1
>gi|28948883|pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Bound To Cysteine Sulfamoyl Adenylate Length = 501
>gi|28948884|pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From Methanothermobacter Thermautotrophicus Length = 501
Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats.
Identities = 56/406 (13%), Positives = 126/406 (31%), Gaps = 49/406 (12%)
Query: 247 RKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVLDQHLWQ 306
+ E ++ G+ W G+ I + + +RR + D+EE+ P ++ +
Sbjct: 45 HNILEEAEIIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDRDHEEVLFPLLVPEDELA 104
Query: 307 QSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFG 366
+ + K R AL+P + +F ++S+ +LP+R +
Sbjct: 105 KEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVV 164
Query: 367 SVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVK 426
+ +R E + + T +AH
Sbjct: 165 NTFRYETKHTRPLIRVREITTFKEAHTIHATASEAE------------------------ 200
Query: 427 LSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDA 486
+ A I K +++ G+ Y F+ ++ D
Sbjct: 201 ------------EQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPD- 247
Query: 487 IGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGN- 545
+ F + + + +H+ +G +R I +I
Sbjct: 248 GKTLQIGTVHNLGQTFARTFEIKFETPEGDHEY---VHQTCYGLSDRVIASVIAIHGDES 304
Query: 546 ---LPLWLSPIQAIVTTI-----TSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIRE 597
LP ++ Q ++ I +E +E+ + L++ + D R+ K E
Sbjct: 305 GLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYE 364
Query: 598 HSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTK 643
++ +P+ + G ++ + + I R + L L +
Sbjct: 365 WEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRE 410