RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(652 letters)
>gnl|CDD|179011 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 1085 bits (2808), Expect = 0.0
Identities = 350/647 (54%), Positives = 466/647 (72%), Gaps = 14/647 (2%)
Query: 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVRE-GSIEIIT 63
IK+T PDGS++ F T +DVA SIS LAK AVA +NG++ DLS P+ E S+EIIT
Sbjct: 2 IKITLPDGSVREFEAGVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIIT 61
Query: 64 PEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIE 123
+D L +IRHS AH++A+AV+ ++P+ ++ IGP+IE+GFYYDFD+E+PF+ ++L IE
Sbjct: 62 AKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERPFTPEDLEAIE 121
Query: 124 KKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDLC 183
K+M+EII + P ++ +S E+A ELF+ + E YKVE++E IP E ++LYRQGE+ DLC
Sbjct: 122 KEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEFVDLC 181
Query: 184 RGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEK 243
RGPHV STG++K FKL+KVAGAYWRGDS ML RIYGTA+ ++EL YL+ LEE++K
Sbjct: 182 RGPHVPSTGKIK-AFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLEEAKK 240
Query: 244 RDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRK-IKDDYEEINTPQVLDQ 302
RDHRKL +E+DLFH E+ G+ FWH KGW I + L Y+RRK K Y+E+ TPQ+LD+
Sbjct: 241 RDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDR 300
Query: 303 HLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRL 362
LW+ SGHWD YR NMF +D +ALKPMNCPGHV ++ GL+SYR+LP+RL
Sbjct: 301 ELWETSGHWDHYRENMFPTTESDG-----EEYALKPMNCPGHVQIYKQGLRSYRDLPLRL 355
Query: 363 AEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEK 422
AEFG+V+R EPSG+LHGLMRVRGFTQDDAH+FCT EQ+ E K+ +LI+ +YKDFGFE
Sbjct: 356 AEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFED 415
Query: 423 IMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYI 482
VKLSTRPEKR+GSD +WD AE +K LD + ++ + GEGAFYGPK ++
Sbjct: 416 YEVKLSTRPEKRIGSDEMWDKAEAALKEALDELG------LDYEIAPGEGAFYGPKIDFQ 469
Query: 483 LKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENF 542
LKDA+GR+WQCGTIQ+DFNLP RF+ YV EK PVMIHRA+ GS+ERFIGI+IE++
Sbjct: 470 LKDALGREWQCGTIQLDFNLPERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEHY 529
Query: 543 KGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKK 602
G P WL+P+Q +V IT +YA+E+A LK+ + +E D RNE I YKIRE ++K
Sbjct: 530 AGAFPTWLAPVQVVVLPITDKHADYAKEVAKKLKAAGIRVEVDLRNEKIGYKIREAQLQK 589
Query: 603 IPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPD 649
+P +++ GDKE ++ +RR G +SL + I L +E
Sbjct: 590 VPYMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIASRS 636
>gnl|CDD|183422 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 839 bits (2171), Expect = 0.0
Identities = 271/584 (46%), Positives = 390/584 (66%), Gaps = 20/584 (3%)
Query: 65 EDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEK 124
+ P L VIRHS AH++A+AVQ ++P+ ++ IGP IEDGFYYDFD +PF+ ++L +IEK
Sbjct: 1 DSPDGLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEPFTPEDLKKIEK 60
Query: 125 KMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDLCR 184
KM++II R PF ++ +S E+ARE F E YK+E+++ IP +E +T+Y G++ DLCR
Sbjct: 61 KMKKIIKRGLPFEREEVSREEAREEF--ANEPYKLELIDDIP-EEGITIYDNGDFEDLCR 117
Query: 185 GPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKR 244
GPHV +T +K FKL VAGAYWRGD P L RIYGTAW T++EL +YL LEE++KR
Sbjct: 118 GPHVPNTKFIK-AFKLTSVAGAYWRGDEKNPQLQRIYGTAWETKEELKEYLKRLEEAKKR 176
Query: 245 DHRKLAREMDLFHIAED-GSGVIFWHRKGWKIFQTLISYMRRK-IKDDYEEINTPQVLDQ 302
DHRKL +E+DLF ++ G G+ WH KG I + + Y+R++ +K YE + TP +
Sbjct: 177 DHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKS 236
Query: 303 HLWQQSGHWDSYRANMFAVKCADDTIK-DLRTFALKPMNCPGHVAVFNHGLKSYRELPVR 361
LW+ SGH D+Y+ NMF ++ D + LKPMNCPGH+ ++ L+SYR+LP+R
Sbjct: 237 DLWKTSGHLDNYKENMF------PPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLR 290
Query: 362 LAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFE 421
LAEFG+VYR E SG LHGL RVRGFTQDDAH+FCT +Q+ +E LK+ + ++ + KDFGF+
Sbjct: 291 LAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFK 350
Query: 422 KIMVKLSTR-PEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
++LSTR PEK VG D +W+ A ++ L+ + + G AFYGPK +
Sbjct: 351 DYYLELSTREPEKYVGDDEVWEKATEALREALEELG------LEYVEDPGGAAFYGPKID 404
Query: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
+KDA+GR+WQ TIQ+DFNLP RF+ Y ++ PVMIHRA+FGSIERFIGI+ E
Sbjct: 405 VQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTE 464
Query: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
++ G P WL+P+Q ++ + + EYA+E+A L++ + +E D NE +N KIR
Sbjct: 465 HYAGAFPFWLAPVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKKIRNAQK 524
Query: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644
+KIP +++ GDKE ++ +R + L + I ++ ++
Sbjct: 525 QKIPYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEK 568
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed.
Length = 639
Score = 688 bits (1778), Expect = 0.0
Identities = 285/643 (44%), Positives = 440/643 (68%), Gaps = 17/643 (2%)
Query: 5 IKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGS-IEIIT 63
I++ FPDGS+K F T ++A SIS SL KKAVA +N K+ DL + E + +EIIT
Sbjct: 6 IEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIIT 65
Query: 64 PEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIE 123
+ + + RHS AHI+A+AV+ ++ +V + +GP+IE+GFYYD D + ++L +IE
Sbjct: 66 IDSNEGVEIARHSAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSSVNVEDLRKIE 125
Query: 124 KKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDLC 183
K+M++II + + +S E+A +LF+ + K+E+LE+IP+ E++TLY+QGE+ DLC
Sbjct: 126 KEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQGEFVDLC 185
Query: 184 RGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEK 243
RGPH+ STG +K F+L V+GAYWRGDSN +L RIYG A+++Q+EL +YL+F+EE+ K
Sbjct: 186 RGPHLPSTGYLKA-FQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHFVEEAAK 244
Query: 244 RDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRR-KIKDDYEEINTPQVLDQ 302
R+HRKL +E++LF +E+ G+ F+ KG I L +++R + + +Y+E+ TP +++Q
Sbjct: 245 RNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQ 304
Query: 303 HLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRL 362
LW++SGHWD Y+ NM+ + D+ +FALKPMNCPGH+ +F + L SYRELP+R+
Sbjct: 305 ELWERSGHWDHYKDNMYFSE-VDNK-----SFALKPMNCPGHMLMFKNKLHSYRELPIRM 358
Query: 363 AEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEK 422
EFG V+R+E SG+L+GL+RVR F QDDAH+F T +Q+ +E + I +YK FGFE
Sbjct: 359 CEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFE- 417
Query: 423 IMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYI 482
V+LSTRPE +G D LW+ AE ++ VL ++ R+N G+GAFYGPK ++
Sbjct: 418 YEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKY--RLNE----GDGAFYGPKIDFH 471
Query: 483 LKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENF 542
+KDA+ R QCGTIQ+DF +P +F+ Y++ +EK PV+IHRAV GS++RF+ I+IE+F
Sbjct: 472 IKDALNRSHQCGTIQLDFQMPEKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHF 531
Query: 543 KGNLPLWLSPIQAIVTTITSSA-VEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIK 601
G P WL+P+Q V ++++ V+YA E+A+ L + +E D R+E + YKIRE ++
Sbjct: 532 GGAFPAWLAPVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERDERDEKLGYKIREAQMQ 591
Query: 602 KIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644
KIP +++ GDKE ++ +R++G ++ + L + + +E
Sbjct: 592 KIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEE 634
>gnl|CDD|161870 TIGR00418, thrS, threonyl-tRNA synthetase. This model represents
the threonyl-tRNA synthetase found in most organisms.
This protein is a class II tRNA synthetase, and is
recognized by the pfam model tRNA-synt_2b. Note that B.
subtilis has closely related isozymes thrS and thrZ. The
N-terminal regions are quite dissimilar between archaeal
and eubacterial forms, while some eukaryotic forms are
missing sequence there altogether..
Length = 563
Score = 655 bits (1691), Expect = 0.0
Identities = 269/575 (46%), Positives = 377/575 (65%), Gaps = 17/575 (2%)
Query: 74 RHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARD 133
RHS AH++AEA++ ++P+V++AIGP++EDGFYYDF+ ++ F+ ++L +IEK M+EI ++
Sbjct: 1 RHSIAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKN 60
Query: 134 SPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGE-WFDLCRGPHVRSTG 192
P K +S E+A E F+ E YK+E+L+ IP T Y G+ + DLC+GPH+ +T
Sbjct: 61 YPVAKLSVSLEEALEAFK-VLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTS 119
Query: 193 QVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLARE 252
+K F KL KVAGAYWRGDS ML RIYGTAW +++L YL LEE++KRDHRKL +E
Sbjct: 120 FIKAF-KLEKVAGAYWRGDSKNKMLQRIYGTAWADKKQLAAYLLRLEEAKKRDHRKLGKE 178
Query: 253 MDLFHIA-EDGSGVIFWHRKGWKIFQTLISYMRRK-IKDDYEEINTPQVLDQHLWQQSGH 310
++LF E G G+ FW KG I L ++R+K IK Y E+ TP + D LW+ SGH
Sbjct: 179 LELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGH 238
Query: 311 WDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYR 370
WD+Y+ MF D+ R F LKPMNCPGH +F L+SYR+LP+R+AE G +R
Sbjct: 239 WDNYKERMFPFTELDN-----REFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHR 293
Query: 371 NEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTR 430
E SG LHGLMRVRGFTQDDAH+FCT++Q+ E LI +Y DFGF +LSTR
Sbjct: 294 YEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTR 353
Query: 431 -PEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGR 489
PE +G D LW+ AE ++ L + + + G GAFYGPK ++ KDA+GR
Sbjct: 354 DPEDFIGEDELWEKAEAALEEALKEL------GVPYEIDPGRGAFYGPKIDFAFKDALGR 407
Query: 490 DWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLW 549
+WQC T+Q+DF LP RF+ YV+ +E+ PVMIHRA+ GSIERFI I++E + GN PLW
Sbjct: 408 EWQCATVQLDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLW 467
Query: 550 LSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIIC 609
L+P+Q +V + ++YA+++A LK + ++ D RNE + KIRE +KIP +++
Sbjct: 468 LAPVQVVVIPVNERHLDYAKKVAQKLKKAGIRVDVDDRNERLGKKIREAQKQKIPYMLVV 527
Query: 610 GDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644
GDKE ++ +R +K+SL + + L KE
Sbjct: 528 GDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRKE 562
>gnl|CDD|178431 PLN02837, PLN02837, threonine-tRNA ligase.
Length = 614
Score = 574 bits (1481), Expect = e-164
Identities = 266/569 (46%), Positives = 374/569 (65%), Gaps = 21/569 (3%)
Query: 63 TPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQI 122
T E L IRH+CAH+MA AVQ ++P+ +V IGP IE+GFYYDFD E P + +L +I
Sbjct: 36 TNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDME-PLTDKDLKRI 94
Query: 123 EKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQG-EWFD 181
+K+M II+R+ P +++ +S E+A++ + E YK+EILE I +E +T+Y G EW+D
Sbjct: 95 KKEMDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEILEGI-KEEPITIYHIGEEWWD 153
Query: 182 LCRGPHVRSTGQV-KKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
LC GPHV TG++ KK +L VAGAYWRGD ML RIYGTAW ++++L YL+F EE
Sbjct: 154 LCAGPHVERTGKINKKAVELESVAGAYWRGDEKNQMLQRIYGTAWESEEQLKAYLHFKEE 213
Query: 241 SEKRDHRKLAREMDLFHIAED-GSGVIFWHRKGWKIFQTLISYMRR-KIKDDYEEINTPQ 298
+++RDHR+L +++DLF I +D G G++FWH KG + + ++ + Y+ + TP
Sbjct: 214 AKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPH 273
Query: 299 VLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYREL 358
V LW+ SGH D Y+ NM+ +D + LR PMNCP H+ V+ L SYR+L
Sbjct: 274 VAKADLWKTSGHLDFYKENMYDQMDIEDELYQLR-----PMNCPYHILVYKRKLHSYRDL 328
Query: 359 PVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDF 418
P+R+AE G+VYR E SGSLHGL RVRGFTQDDAH+FC ++Q+ +E + +L I K F
Sbjct: 329 PIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQF 388
Query: 419 GFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDR-INTGVLLGEGAFYGP 477
GF K + LSTRPEK VGSD +W+ A ++ LD D+ V G GAFYGP
Sbjct: 389 GFSKYEINLSTRPEKSVGSDDIWEKATTALRDALD-------DKGWEYKVDEGGGAFYGP 441
Query: 478 KFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGI 537
K + ++DA+GR WQC TIQVDFNLP RF+ YV+S+SEK P+MIHRA+ GS+ERF G+
Sbjct: 442 KIDLKIEDALGRKWQCSTIQVDFNLPERFDITYVDSNSEKKRPIMIHRAILGSLERFFGV 501
Query: 538 MIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIRE 597
+IE++ G+ PLWL+P+QA V +T + +EY +E+ LK+ + E E + IR
Sbjct: 502 LIEHYAGDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEVCH-GERLPKLIRN 560
Query: 598 HSIKKIPIIIICGDKEASERSIGIR-RFG 625
+KIP++ + G KE R++ +R R G
Sbjct: 561 AETQKIPLMAVVGPKEVETRTLTVRSRHG 589
>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase.
Length = 686
Score = 509 bits (1313), Expect = e-145
Identities = 234/629 (37%), Positives = 370/629 (58%), Gaps = 26/629 (4%)
Query: 2 PSDIKLTFPDGSIKNFPVHATGS-DVAESISRSLAKKAVAVAINGKVCDLSDPVREG--S 58
IK+T PDG++K+ T D+A+ IS+ LA A+ ++G + D++ P+ EG
Sbjct: 49 GDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWDMTRPL-EGDCK 107
Query: 59 IEIITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIE--DGFYYD-FDKEQPFS 115
+++ +D HS AHI+ EA++ + ++ IGP +GFYYD F ++ +
Sbjct: 108 LKLFKFDDDEGRDTFWHSSAHILGEALELEY-GCKLCIGPCTTRGEGFYYDAFYGDRTLN 166
Query: 116 SDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYR 175
++ IE + ++ + PF + ++ E+A E+F K +KVEI+ +P +T+YR
Sbjct: 167 EEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENK--FKVEIINDLPEDATITVYR 224
Query: 176 QGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYL 235
G DLCRGPH+ +T VK F +K + AYWRGD +R L R+YG ++ ++ L +Y
Sbjct: 225 CGPLVDLCRGPHIPNTSFVKAF-ACLKASSAYWRGDVDRESLQRVYGISFPDKKLLKEYK 283
Query: 236 YFLEESEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEI 294
+ +EE++KRDHR L ++ +LF E G F+ G +I+ L+ ++R + + Y+E+
Sbjct: 284 HRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEV 343
Query: 295 NTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKS 354
TP + + LW+ SGH Y+ NMF + + + F LKPMNCPGH +F H ++S
Sbjct: 344 ITPNIYNMDLWETSGHAAHYKENMFVFEI------EKQEFGLKPMNCPGHCLMFAHRVRS 397
Query: 355 YRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISI 414
YRELP+RLA+FG ++RNE SG+L GL RVR F QDDAH+FC ++Q+ +E + + + +
Sbjct: 398 YRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYV 457
Query: 415 YKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAF 474
Y+ FGF + KLSTRPEK +G WD AE + L+ Q +N G+GAF
Sbjct: 458 YEVFGFTYEL-KLSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQ--LNE----GDGAF 510
Query: 475 YGPKFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYV-NSHSEKCHPVMIHRAVFGSIER 533
YGPK + + DA+ R +QC T+Q+DF LP RF Y ++ PVMIHRA+ GS+ER
Sbjct: 511 YGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAEDEAKIERPVMIHRAILGSVER 570
Query: 534 FIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINY 593
I++E++ G P WLSP QAIV I+ + +YA+E+ L + ++ D + I
Sbjct: 571 MFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRKIQK 630
Query: 594 KIREHSIKKIPIIIICGDKEASERSIGIR 622
K+RE + + I++ G+ EA+ ++ +R
Sbjct: 631 KVREAQLAQYNYILVVGEAEAATGTVNVR 659
>gnl|CDD|184826 PRK14799, thrS, threonyl-tRNA synthetase; Provisional.
Length = 545
Score = 358 bits (921), Expect = 2e-99
Identities = 181/501 (36%), Positives = 287/501 (57%), Gaps = 23/501 (4%)
Query: 149 LFESKKEAYKVEILESIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAGAYW 208
L E KK +L ++ + N +Y+ G + ST K+F+++ ++ +
Sbjct: 48 LDEVKKAI-NENVLANVSIENNQIVYK-GNKVSIIEDKVSISTNLNPKYFEILNISTHH- 104
Query: 209 RGDSNRPMLSRIYGTAWNTQQELTQYLYFLEESEKRDHRKLAREMDLFHIAED-GSGVIF 267
+ RI G A+ T+++L YL +LE++E+ DHR + ++DLF E+ GSG++
Sbjct: 105 --PNPNEQYVRIRGVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVL 162
Query: 268 WHRKGWKIFQTLISYMRRKIKDD--YEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCAD 325
+H KG I LI++MR +I D Y+E+ T V +W+ SGH+ YR +
Sbjct: 163 FHPKGQTIRNELIAFMR-EINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEG 221
Query: 326 DTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRG 385
D + +KPMNCP H+ ++ ++YR+LP+R +EFG VYR E G L+GL+RVRG
Sbjct: 222 DE------YGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRG 275
Query: 386 FTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF--EKIMVKLSTRPEKRVGSDALWDD 443
F QDD H+F ++Q+ E + + + ++ FGF + I LSTRP++ +GSD LW+
Sbjct: 276 FVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEK 335
Query: 444 AENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLP 503
A N + L + G+ EGAFYGPK ++ ++D++GR WQ TIQVDFNLP
Sbjct: 336 ATNALISALQESG------LKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLP 389
Query: 504 SRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSS 563
RF Y++ K PVM+HRA++GSI+RF+ I++E+FKG LP WLS +Q V IT
Sbjct: 390 ERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPTWLSSVQVRVLPITDE 449
Query: 564 AVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRR 623
EYA+++ N ++ + E D+ ET++ +I+ + +P I+I G KEASE ++ +R
Sbjct: 450 VNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRA 509
Query: 624 FGSTTTQKVSLLDAIPILTKE 644
G+ + V + +L E
Sbjct: 510 RGNIEVRNVKFEKFLELLITE 530
>gnl|CDD|179698 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated.
Length = 613
Score = 145 bits (367), Expect = 5e-35
Identities = 85/307 (27%), Positives = 150/307 (48%), Gaps = 34/307 (11%)
Query: 354 SYRELPVRLAEFGSV-YRNEPSGSLHGLMRVRGFTQDDAHVFCTK-EQMFNECLKIHNLI 411
SY+ LP+++ E + +R E G L GL R+R FT D H C EQ E K + +I
Sbjct: 303 SYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMI 362
Query: 412 ISIYKDFG--FEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVL- 468
+ +D G +E + R D +++ ++ + ++ R VL
Sbjct: 363 LETGEDLGRDYEVAI---------RFTED-FYEENKDWIVELVK--------REGKPVLL 404
Query: 469 --LGEGAFYGP-KFEYILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHR 525
L E Y K E+ D++GR + T+Q+D RF YV+ + E+ +P+++H
Sbjct: 405 EILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDENGEEKYPIILHC 464
Query: 526 AVFGSIERFI-----GIMIENFKGN---LPLWLSPIQAIVTTITSSAVEYAQEIANLLKS 577
+ GSIER I E +G LP WLSP Q V ++ ++YA+E+A+ L++
Sbjct: 465 SPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEA 524
Query: 578 HHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDA 637
+ ++ D R+E++ KIR+ + IP +++ GDKE + + + +++L +
Sbjct: 525 AGIRVDVDDRDESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEEL 584
Query: 638 IPILTKE 644
I + +E
Sbjct: 585 IERIKEE 591
>gnl|CDD|161863 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I.
Prolyl-tRNA synthetase is a class II tRNA synthetase and
is recognized by pfam model tRNA-synt_2b, which
recognizes tRNA synthetases for Gly, His, Ser, and Pro.
The prolyl-tRNA synthetases are divided into two widely
divergent families. This family includes the archaeal
enzyme, the Pro-specific domain of a human
multifunctional tRNA ligase, and the enzyme from the
spirochete Borrelia burgdorferi. The other family
includes enzymes from Escherichia coli, Bacillus
subtilis, Synechocystis PCC6803, and one of the two
prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Length = 472
Score = 68.2 bits (167), Expect = 6e-12
Identities = 79/377 (20%), Positives = 145/377 (38%), Gaps = 61/377 (16%)
Query: 263 SGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSG-HWDSYRANMFA 320
G W G+KI++ + +R + + +EE+ P ++ + + H + ++
Sbjct: 28 KGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYW 87
Query: 321 VKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGL 380
+ + D AL+P + +F +KSY +LP+++ ++ +V+R E +
Sbjct: 88 ITHGGLSKLD-EPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHT-RPF 145
Query: 381 MRVRGFTQDDAH-VFCTKEQMFNECLKIHNLIISIYKDFGFEK--IMVKLSTRPEKRVGS 437
+R R FT +AH T E+ + L+ + IYK+F I + +PE
Sbjct: 146 LRTREFTWQEAHTAHATAEEAEEQVLRA----LDIYKEFIENSLAIPYFVGRKPEW---- 197
Query: 438 DALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQ 497
++ GA Y FE I+ D GR Q T
Sbjct: 198 -----------------------EKF-------AGAEYTWAFETIMPD--GRTLQIATSH 225
Query: 498 -VDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMI----ENFKGNLPLWLSP 552
+ N F + +K + ++ +G R IG +I + LP ++P
Sbjct: 226 NLGQNFAKTFEIKFETPTGDKEYA---YQTSYGISTRVIGALIAIHSDEKGLVLPPRVAP 282
Query: 553 IQAIVT------TITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPII 606
IQ ++ +E A+E+ + LK + D R+ K + IK IP+
Sbjct: 283 IQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGRKFYQWEIKGIPLR 342
Query: 607 IICGDKEASERSIGIRR 623
I G + + I R
Sbjct: 343 IEVGPNDIEKNIAVISR 359
>gnl|CDD|161864 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II.
Prolyl-tRNA synthetase is a class II tRNA synthetase and
is recognized by pfam model tRNA-synt_2b, which
recognizes tRNA synthetases for Gly, His, Ser, and Pro.
The prolyl-tRNA synthetases are divided into two widely
divergent groups. This group includes enzymes from
Escherichia coli, Bacillus subtilis, Aquifex aeolicus,
the spirochete Treponema pallidum, Synechocystis
PCC6803, and one of the two prolyL-tRNA synthetases of
Saccharomyces cerevisiae. The other group includes the
Pro-specific domain of a human multifunctional tRNA
ligase and the prolyl-tRNA synthetases from the Archaea,
the Mycoplasmas, and the spirochete Borrelia
burgdorferi.
Length = 568
Score = 66.8 bits (163), Expect = 2e-11
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 12/166 (7%)
Query: 258 IAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRA 316
I GSG+ W G ++ + + + +R ++ KD E+ P + LWQ+SG WD+Y
Sbjct: 32 IRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGP 91
Query: 317 NMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNE--PS 374
+ +K R F L P + + + +KSY++LP+ L + + +R+E P
Sbjct: 92 ELLRLKDRKG-----REFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPR 146
Query: 375 GSLHGLMRVRGFTQDDAHVFCT-KEQMFNECLKIHNLIISIYKDFG 419
GLMR R F DA+ F + +E + K++ +I+ G
Sbjct: 147 F---GLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLG 189
Score = 27.9 bits (62), Expect = 8.0
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 566 EYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIG--IRR 623
+ A+E+ + L + + + D RNE K + + IP+ ++ G K I RR
Sbjct: 490 QLAEELYSELLAQGVDVLLDDRNERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRR 549
Query: 624 FGSTTTQKV 632
G K
Sbjct: 550 NGEKQLIKK 558
>gnl|CDD|129096 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active form of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this SAD
domain (the second additional domain). The second
additional domain is comprised of a pair of
perpendicularly orientated antiparallel beta sheets, of
four and three strands, respectively, that surround a
central alpha helix that forms the core of the domain.
Length = 44
Score = 63.2 bits (155), Expect = 2e-10
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 9/52 (17%)
Query: 171 VTLYRQGEWF-DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIY 221
V + G++ +LC G HV +TG++ FK++ V+GAYW L RIY
Sbjct: 1 VRVVSIGDFDVELCGGTHVPNTGEI-GAFKILSVSGAYWG-------LQRIY 44
>gnl|CDD|149189 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second
additional domain. The catalytically active from of
threonyl/alanyl tRNA synthetase is a dimer. Within the
tRNA synthetase class II dimer, the bound tRNA interacts
with both monomers making specific interactions with the
catalytic domain, the C-terminal domain, and this domain
(the second additional domain). The second additional
domain is comprised of a pair of perpendicularly
orientated antiparallel beta sheets, of four and three
strands, respectively, that surround a central alpha
helix that forms the core of the domain.
Length = 44
Score = 60.9 bits (149), Expect = 9e-10
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Query: 171 VTLYRQGEWF-DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIY 221
V + R G++ DLC G HV +TG++ FK++K GDS L RIY
Sbjct: 1 VRVVRIGDFDVDLCGGTHVPNTGEI-GAFKILK-------GDSKNKGLQRIY 44
>gnl|CDD|181528 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional.
Length = 477
Score = 54.0 bits (131), Expect = 1e-07
Identities = 70/301 (23%), Positives = 119/301 (39%), Gaps = 87/301 (28%)
Query: 352 LKSYRELPVRLAEFGSVYRNE----PSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLK 406
++SYR+LP+ ++ +V R E P +R R F + H T+E+ E L+
Sbjct: 124 IQSYRDLPLLYNQWVNVVRWETKTRP------FLRTREFLWQEGHTAHATEEEAEEETLE 177
Query: 407 IHNLIISIYKDFGFEKIM---VKLSTRPEKRVGSDALWDDAENIMK--GVLDTIKNSSQD 461
+ IYK+F FE + V + + E W+ K G T
Sbjct: 178 MLE----IYKEF-FEDYLAIPVIIGKKTE--------WE------KFAGADYTYT----- 213
Query: 462 RINTGVLLGEGAFYGPKFEYILKDAIGRDWQCGTIQVDFNLPSRF-NAF---YVNSHSEK 517
E ++ D G+ Q GT L F AF + + +
Sbjct: 214 -----------------IEAMMPD--GKALQAGTSH---YLGQNFAKAFDIKFQDKDGKL 251
Query: 518 CHPVMIHRAVFGSIERFIG--IMIENFKGN-----LPLWLSPIQAIVTTITSSA------ 564
+ H+ +G R IG IM G+ LP ++PIQ ++ I
Sbjct: 252 EYV---HQTSWGVSTRLIGALIMTH---GDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEV 305
Query: 565 VEYAQEIANLLKSHHLSIETD-FRNETINYKIREHSIKKIPIIIICGDKEASERSIGI-R 622
+EYA+E+A LK + ++ D ++T +K E +K +P+ I G ++ ++ + R
Sbjct: 306 LEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGVPLRIEIGPRDLENNTVVLVR 365
Query: 623 R 623
R
Sbjct: 366 R 366
>gnl|CDD|179306 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 52.1 bits (125), Expect = 5e-07
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 20/130 (15%)
Query: 75 HSCAHIMAEAVQSIWPE-VQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARD 133
H+ H++ +A++ + + V+ I + +DF + + DE+ ++E + I D
Sbjct: 457 HTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDEIKKVEDIVNLQIKND 516
Query: 134 SPFLKQYLSHEKARE-----LFESKKEAYKVEILESIPAKENVTLYRQGEW-FDLCRGPH 187
K+ +S E+ARE LF K E + V +Y + ++C GPH
Sbjct: 517 LSVKKEVMSLEEAREKGAMALFGEKYE-------------DIVKVYEIDGFSKEVCGGPH 563
Query: 188 VRSTGQVKKF 197
V +TG++ F
Sbjct: 564 VENTGELGTF 573
>gnl|CDD|184902 PRK14938, PRK14938, Ser-tRNA(Thr) hydrolase; Provisional.
Length = 387
Score = 49.5 bits (118), Expect = 3e-06
Identities = 19/77 (24%), Positives = 43/77 (55%)
Query: 546 LPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPI 605
LP WL+PIQ + + ++++ ++A L+ + + D ++++ KIR + IP
Sbjct: 268 LPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGTEWIPF 327
Query: 606 IIICGDKEASERSIGIR 622
+II G++E ++ ++
Sbjct: 328 VIIIGEREVKTSTLTVK 344
>gnl|CDD|181689 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.
Length = 565
Score = 48.9 bits (118), Expect = 4e-06
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 293 EINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDL--RTFALKPMNCPGHVAVFNH 350
E+ P + LWQ+SG W+ Y + +KD R F L P H V
Sbjct: 68 EVLMPALQPAELWQESGRWEEYGPELL-------RLKDRHGRDFVLGPT----HEEVITD 116
Query: 351 ----GLKSYRELPVRLAEFGSVYRNE--PSGSLHGLMRVRGFTQDDAHVF 394
+KSY++LP+ L + + +R+E P GLMR R F DA+ F
Sbjct: 117 LVRNEIKSYKQLPLNLYQIQTKFRDEIRPRF---GLMRGREFIMKDAYSF 163
>gnl|CDD|161881 TIGR00442, hisS, histidyl-tRNA synthetase. This model finds a
histidyl-tRNA synthetase in every completed genome.
Apparent second copies from Bacillus subtilis,
Synechocystis sp., and Aquifex aeolicus are slightly
shorter, more closely related to each other than to
other hisS proteins, and actually serve as regulatory
subunits for an enzyme of histidine biosynthesis. They
were excluded from the seed alignment and score much
lower than do single copy histidyl-tRNA synthetases of
other genomes not included in the seed alignment. These
putative second copies of HisS score below the trusted
cutoff. The regulatory protein kinase GCN2 of
Saccharomyces cerevisiae (YDR283c), and related proteins
from other species designated eIF-2 alpha kinase, have a
domain closely related to histidyl-tRNA synthetase that
may serve to detect and respond to uncharged tRNA(his),
an indicator of amino acid starvation; these regulatory
proteins are not orthologous and so score below the
noise cutoff.
Length = 397
Score = 47.1 bits (113), Expect = 1e-05
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 531 IERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNET 590
IER + ++ E G P S V + A A ++A L+ + +E D
Sbjct: 303 IERLLLLLEE--LGLEPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGGRK 360
Query: 591 INYKIREHSIKKIPIIIICGDKEASERSIGIR 622
+ +++ +I G+ E + ++ ++
Sbjct: 361 LKKQLKYADKLGARFAVILGEDELANGTVTLK 392
Score = 35.1 bits (82), Expect = 0.049
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 21/129 (16%)
Query: 346 AVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECL 405
AV + L P +L G ++R E G R R F Q V + + +
Sbjct: 86 AVIENKL--LLPKPFKLYYIGPMFRYERPQK--G--RYRQFHQFGVEVIGSDSPLAD--A 137
Query: 406 KIHNLIISIYKDFGFEKIMVKLS------TRPEKRVGSDALWDDAENIMKGVLDTIKNSS 459
+I L I K+ G + ++++ R E R +AL + K LD + S
Sbjct: 138 EIIALAAEILKELGIKDFTLEINSLGILEGRLEYR---EAL---LRYLDKH-LDKLGEDS 190
Query: 460 QDRINTGVL 468
R+ L
Sbjct: 191 VRRLEKNPL 199
>gnl|CDD|178947 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 40.5 bits (96), Expect = 0.001
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 30/110 (27%)
Query: 107 DFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARE-----LFESKKEAY--KV 159
DF + + +EL +IE + E I + P + +S E+A++ LF E Y +V
Sbjct: 586 DFSHFEALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKKMGAMALFG---EKYGDEV 642
Query: 160 EILE----SIPAKENVTLYRQGEWFDLCRGPHVRSTGQVKKFFKLMKVAG 205
++ SI +LC G HV +TG + FK++ +G
Sbjct: 643 RVVSIGDFSI---------------ELCGGTHVSNTGDI-GLFKIVSESG 676
>gnl|CDD|183440 PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional.
Length = 439
Score = 39.8 bits (94), Expect = 0.002
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 29/151 (19%)
Query: 293 EINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDL--RTFALKPMNCPGHVAVFNH 350
EI P + LW++SG +D+Y M IKD R P N +F
Sbjct: 68 EILMPTIQPADLWRESGRYDAYGKEML-------RIKDRHDREMLYGPTNEEMITDIFRS 120
Query: 351 GLKSYRELPVRLAEFGSVYRNE--PSGSLHGLMRVRGFTQDDAHVF-CTKE-------QM 400
+KSY++LP+ L +R+E P G+MR R F DA+ F +E +M
Sbjct: 121 YVKSYKDLPLNLYHIQWKFRDEIRPR---FGVMRGREFLMKDAYSFDLDEEGARHSYNRM 177
Query: 401 FNECLKIHNLIISIYKDFGFEKIMVKLSTRP 431
F L+ + G + I ++ T P
Sbjct: 178 FVAYLR-------TFARLGLKAIPMRADTGP 201
>gnl|CDD|178812 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.
Length = 412
Score = 39.0 bits (92), Expect = 0.004
Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 551 SPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKK-------- 602
P+ V + A A ++A L++ + +E D+ +KK
Sbjct: 317 EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGG---------RKLKKQFKYADKS 367
Query: 603 -IPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTK 643
++I G+ E + ++ ++ + Q V L + + L +
Sbjct: 368 GARFVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKE 409
>gnl|CDD|161851 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type.
This model describes a glycyl-tRNA synthetase distinct
from the two alpha and two beta chains of the tetrameric
E. coli glycyl-tRNA synthetase. This enzyme is a
homodimeric class II tRNA synthetase and is recognized
by pfam model tRNA-synt_2b, which recognizes His, Ser,
Pro, and this set of glycyl-tRNA synthetases.
Length = 551
Score = 37.9 bits (88), Expect = 0.007
Identities = 36/171 (21%), Positives = 54/171 (31%), Gaps = 59/171 (34%)
Query: 287 IKDDYEEINTPQVLDQHLWQQSGHWDS--------------YRANMFAVKCADDTIKDLR 332
+ EI+TP + + + + SGH D+ +RA+ + +
Sbjct: 53 KNERVLEIDTPIITPEEVLKASGHVDNFTDWMVDCKSCKERFRADHLIEEKLGKRLWGFS 112
Query: 333 TFALKPM------NCP-------GHVAVFN----------HGLKSY-------------- 355
L + NCP V FN K Y
Sbjct: 113 GPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGIFINFK 172
Query: 356 -------RELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQ 399
R+LP +A+ G +RNE S +GL RVR F Q + F
Sbjct: 173 RLLQFFRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFEQAEIEFFVHPLD 222
Score = 34.4 bits (79), Expect = 0.094
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 546 LPLWLSPIQAIVTTITSSA--VEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKI 603
LP L+PI+ V + + E A+EI L+ + I+ D TI + R
Sbjct: 451 LPPHLAPIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIKYDDSG-TIGKRYRRADEIGT 509
Query: 604 PIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644
P + + + ++ IR S +V + + + K
Sbjct: 510 PFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIKKL 550
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase.
Length = 502
Score = 36.1 bits (83), Expect = 0.027
Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 19/183 (10%)
Query: 244 RDHRKLAREMDLFHI--AEDGSGVIFWHRKGWKIF--QTLISYMRRKI-KDDYEEINTPQ 298
+DH +L +E+DLF A + SG F++ K + L+++ ++ K + + TP+
Sbjct: 200 KDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPE 259
Query: 299 VLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYREL 358
++ + ++ G R + V D + + L A P+ + + L
Sbjct: 260 IVRSSVVEKCGF--QPRGDNTQVYSIDGSDQCLIGTAEIPVG-----GIHMDSILLESAL 312
Query: 359 PVRLAEFGSVYRNEPSG---SLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIY 415
P++ F +R E + GL RV F++ + V C E E H +I I
Sbjct: 313 PLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPE----ESESFHEELIQIE 368
Query: 416 KDF 418
+D
Sbjct: 369 EDL 371
>gnl|CDD|161867 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model.
Length = 418
Score = 35.8 bits (83), Expect = 0.032
Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 18/187 (9%)
Query: 242 EKRDHRKLAREMDLFHIAE----DGSGVIFWHRKGWKIFQTLISYMRRK-IKDDYEEINT 296
+ + H +L ++ GS + G K+ + LI++M K+ Y+EI
Sbjct: 138 KPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYP 197
Query: 297 PQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYR 356
P ++++ +G + ++F ++ DT L A P+ +
Sbjct: 198 PYLVNEESLDGTGQLPKFEEDIFKLE---DTDLYLIPTAEVPLTNLHRNEILEEE----- 249
Query: 357 ELPVRLAEFGSVYRNEPSGS----LHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLII 412
ELP++ +R+E +GS GL+RV F + + FC E+ E ++ +
Sbjct: 250 ELPIKYTAHSPCFRSE-AGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAE 308
Query: 413 SIYKDFG 419
I ++
Sbjct: 309 QILQELE 315
>gnl|CDD|163039 TIGR02834, spo_ytxC, putative sporulation protein YtxC. This
uncharacterized protein is part of a panel of proteins
conserved in all known endospore-forming Firmicutes
(low-GC Gram-positive bacteria), including
Carboxydothermus hydrogenoformans, and nowhere else.
Length = 276
Score = 34.2 bits (79), Expect = 0.096
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 16/122 (13%)
Query: 28 ESISRSLAKKAVAVAINGKVCDLSDPVREGSIEIITPE-DPRSLAVIRHSCAHIMAEAVQ 86
ES+ R L K+ + V + + S + I + D + R A I+A+ +
Sbjct: 16 ESLFRRLRKEGLEVGVGESIEGGSHFIE---IYVAEENFDSKFKNKFRKHIASILADIIV 72
Query: 87 SIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEII---ARDSPFLKQYLSH 143
+ I IIE+ +Y+ +E+ QI I+ +D P ++
Sbjct: 73 EHKEDEL--ILKIIEESYYF-------TDQEEIEQILAIANSILTGERKDDPSEIYKMNR 123
Query: 144 EK 145
+
Sbjct: 124 KN 125
>gnl|CDD|161830 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP).
Length = 851
Score = 33.1 bits (76), Expect = 0.22
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 35/155 (22%)
Query: 65 EDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPII--------EDGFYYDFDKEQPFSS 116
E R + HS H++ A+Q + +G + +DF + +
Sbjct: 550 EKRRLRIMRNHSATHLLHAALQKV-------LGNHVWQAGSLVSVKKLRFDFSHYRALTR 602
Query: 117 DELAQIEKKMQEIIARDSPFLKQYLSHEKARE-----LFESKKEAYKVEILESIPAKENV 171
+EL +IE + E I + P ++ ++A+ LF E Y E V
Sbjct: 603 EELEKIEDLVNEQILANIPIKVIFMDLDEAKAKGAFALFG---EKYG----------EKV 649
Query: 172 TLYRQGEW-FDLCRGPHVRSTGQVKKFFKLMKVAG 205
+ G+ +LC G HVR+TG++ FK++K +G
Sbjct: 650 RVVSVGDVSVELCGGTHVRNTGEI-GLFKIVKESG 683
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase.
Length = 684
Score = 33.2 bits (76), Expect = 0.23
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 358 LPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQ 388
LP A+ G +RNE S GL+RVR FT
Sbjct: 274 LPFAAAQIGQAFRNEISPR-QGLLRVREFTL 303
>gnl|CDD|184888 PRK14894, PRK14894, glycyl-tRNA synthetase; Provisional.
Length = 539
Score = 32.3 bits (73), Expect = 0.44
Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 40/170 (23%)
Query: 264 GVIFWHRKGWKIFQTLI-SYMRRKI--KDDYEEINTPQVLDQHLWQQSGHWDSY------ 314
GV + G ++ +I + R + +DD E ++ ++++ +W+ SGH +++
Sbjct: 31 GVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVD 90
Query: 315 --------RANMFAVKCAD--------------------DTIKDLRTFA-LKPMNCPGHV 345
RA+ C + + D +FA L+P G
Sbjct: 91 CRDCKMRWRADHIQGVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIF 150
Query: 346 AVFNHGL-KSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF 394
F + L S R+LP +A+ G +RNE + + L RVR F Q + F
Sbjct: 151 VNFANVLATSARKLPFGIAQVGKAFRNEINPR-NFLFRVREFEQMEIEYF 199
>gnl|CDD|182957 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/
guanosine-3',5'-bis pyrophosphate
3'-pyrophosphohydrolase; Provisional.
Length = 702
Score = 32.0 bits (73), Expect = 0.45
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 PSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREG-SIE 60
P +I + P+G I P AT D A ++ + V ++ + LS P+ G ++E
Sbjct: 385 PDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVE 444
Query: 61 IITPEDPR 68
IIT R
Sbjct: 445 IITAPGAR 452
>gnl|CDD|129774 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family.
(p)ppGpp is a regulatory metabolite of the stringent
response, but appears also to be involved in antibiotic
biosynthesis in some species.
Length = 683
Score = 31.2 bits (71), Expect = 0.84
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 10 PDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGS-IEIITPEDPR 68
P G + P +T D A ++ + K +NGK+ L + G +EIIT ++
Sbjct: 367 PKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITGKNSN 426
>gnl|CDD|179765 PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.
Length = 456
Score = 30.5 bits (70), Expect = 1.5
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 352 LKSYRE-LPVRLAEFGSVYRNE--PSGSLHGLMRVRGFTQDDAHVFC---TKEQMFNECL 405
L++ R+ LP +A+ G +RNE P + R R F Q + F T + F +
Sbjct: 178 LRTARKKLPFGIAQIGKSFRNEITPRN---FIFRTREFEQMELEFFVKPGTDNEWFAYWI 234
Query: 406 KIHNLIISIYKDFGFEK 422
L + D G +
Sbjct: 235 ---ELRKNWLLDLGIDP 248
>gnl|CDD|130299 TIGR01232, lacD, tagatose 1,6-diphosphate aldolase. This family
consists of Gram-positive proteins. Tagatose
1,6-diphosphate aldolase is part of the
tagatose-6-phosphate pathway of galactose-6-phosphate
degradation.
Length = 325
Score = 30.0 bits (67), Expect = 2.1
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 104 FYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILE 163
YYD D + + + A IE+ E +A D PF + L+++ ++ + VE +
Sbjct: 127 LYYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYD------DNIPDNGSVEFAK 180
Query: 164 SIPAKEN 170
P K N
Sbjct: 181 VKPRKVN 187
>gnl|CDD|181936 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 29.0 bits (65), Expect = 3.6
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 334 FALKPMNCPGHVAVFNHGLKSYRELP--VRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDA 391
F L+PM PG ++N+ K R LP +++ E G YR E G H + FT +
Sbjct: 258 FCLRPMLAPG---LYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEH----LEEFTMVN- 309
Query: 392 HVFCTKEQMFNECLKIHNLIISIYKDF 418
FC QM + C + NL +I DF
Sbjct: 310 --FC---QMGSGCTR-ENL-ENIIDDF 329
>gnl|CDD|161882 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase,
regulatory subunit. Apparant second copies of
histidyl-tRNA synthetase, found in Bacillus subtilis,
Synechocystis sp., Aquifex aeolicus, and others, are in
fact a regulatory subunit of ATP
phosphoribosyltransferase, and usually encoded by a gene
adjacent to that encoding the catalytic subunit.
Length = 314
Score = 29.1 bits (66), Expect = 3.9
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 23/119 (19%)
Query: 278 TLISYMRRKIKD-----DYEEINTPQV--LDQHLWQQSGHWDSYRANMFAVKCADDTIKD 330
+ R+++D Y+EI TP + LD +G ++F + +
Sbjct: 9 ARKEEIERQLQDVFRSWGYQEIITPTLEYLDT---LSAGGGIL-NEDLFKLFDSLG---- 60
Query: 331 LRTFALKP-MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQ 388
R L+P M P AV L+ R LP+RL G+V+R SG+ R R FTQ
Sbjct: 61 -RVLGLRPDMTTPIARAVSTR-LRD-RPLPLRLCYAGNVFRTNESGAG----RSREFTQ 112
>gnl|CDD|131747 TIGR02700, flavo_MJ0208, archaeoflavoprotein, MJ0208 family. This
model describes one of two paralogous families of
archaealflavoprotein. The other, described by TIGR02699
and typified by the partially characterized AF1518 of
Archaeoglobus fulgidus, is a homodimeric FMN-containing
flavoprotein that accepts electrons from ferredoxin and
can transfer them to various oxidoreductases. The
function of this protein family is unknown.
Length = 234
Score = 29.1 bits (65), Expect = 3.9
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 22 TGSDVAESISRSLAKKAVAVAINGKVCDLSDPV--REGSIEIITPEDPRSLAVIRHSCAH 79
T + +A I+ SL AVA A G V PV EG I ITP + R C
Sbjct: 98 TVAKIAHGIADSLVTNAVAQAGKGDVPVWVVPVDYEEGIIRTITP-----YMIDRKRCKG 152
>gnl|CDD|181119 PRK07791, PRK07791, short chain dehydrogenase; Provisional.
Length = 286
Score = 28.9 bits (65), Expect = 4.0
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 195 KKFFKLMKVAGAYWRGDSN--RPMLSRIYGTA 224
K F ++ A AYWR +S R + +RI T+
Sbjct: 125 KGHFATLRHAAAYWRAESKAGRAVDARIINTS 156
>gnl|CDD|131420 TIGR02367, PylS, pyrrolysyl-tRNA synthetase. PylS is the archaeal
enzyme responsible for charging the pyrrolysine tRNA,
PylT, by ligating a free molecule of pyrrolysine.
Pyrrolysine is encoded at an in-frame UAG (amber) at
least in several corrinoid-dependent methyltransferases
of the archaeal genera Methanosarcina and
Methanococcoides, such as trimethylamine
methyltransferase.
Length = 453
Score = 28.5 bits (63), Expect = 4.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 332 RTFALKPMNCPGHVAVFNHGLKSYRELP--VRLAEFGSVYRNEPSGSLH 378
+ F L+PM P ++N+ K R LP +++ E G YR E G H
Sbjct: 292 KNFCLRPMLAP---NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEH 337
>gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 28.6 bits (65), Expect = 6.0
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 273 WKIFQTLISYMRRKIKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLR 332
+++ + +IK+D + + D + Y D+ ++DL+
Sbjct: 172 ELLWRKAVDISLDEIKEDLDRLGV--HFDVWFSESE----LYYNGKV-----DEVVEDLK 220
>gnl|CDD|152253 pfam11817, Foie-gras_1, Foie gras liver health family 1. Mutating
the gene foie gras in zebrafish has been shown to affect
development; the mutants develop large, lipid-filled
hepatocytes in the liver, resembling those in
individuals with fatty liver disease. Foie-gras protein
is long and has several well-defined domains though none
of them has a known function. We have annotated this one
as the first. THe C-terminus of this region contains TPR
repeats.
Length = 254
Score = 28.1 bits (63), Expect = 6.6
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 20/107 (18%)
Query: 91 EVQVAIGPIIEDGFYYDF-DKEQPFSSDELAQIEKKMQ---EIIA-----------RDSP 135
Q I + YD +P L EK IIA R
Sbjct: 122 PEQSPASSIASRVYVYDTYLPPEPHEEYPLLGSEKGFDHSKLIIALLSKALEEFKKRKQT 181
Query: 136 FLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFDL 182
+ YLS E A E + +E+L+ + YR+ W+ L
Sbjct: 182 RMASYLSLEMAEEYLRLGDWSKALELLDPV-----ALSYRKEGWWTL 223
>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 482
Score = 28.0 bits (63), Expect = 7.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 66 DPRSLAVIRHSCAHIMAEAVQSIWPEVQVAI 96
P+ L V+ +A AV + PEV +A+
Sbjct: 46 APQHLVVVVGHDRERVAPAVAELAPEVDIAV 76
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.136 0.412
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 10,851,923
Number of extensions: 716682
Number of successful extensions: 1614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1540
Number of HSP's successfully gapped: 59
Length of query: 652
Length of database: 5,994,473
Length adjustment: 100
Effective length of query: 552
Effective length of database: 3,833,673
Effective search space: 2116187496
Effective search space used: 2116187496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)