BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(652 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 652
Score = 1360 bits (3521), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 652/652 (100%), Positives = 652/652 (100%)
Query: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE
Sbjct: 1 MPSDIKLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIE 60
Query: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA
Sbjct: 61 IITPEDPRSLAVIRHSCAHIMAEAVQSIWPEVQVAIGPIIEDGFYYDFDKEQPFSSDELA 120
Query: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF
Sbjct: 121 QIEKKMQEIIARDSPFLKQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWF 180
Query: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE
Sbjct: 181 DLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGTAWNTQQELTQYLYFLEE 240
Query: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL
Sbjct: 241 SEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKDDYEEINTPQVL 300
Query: 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPV 360
DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPV
Sbjct: 301 DQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPV 360
Query: 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF 420
RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF
Sbjct: 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGF 420
Query: 421 EKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
EKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE
Sbjct: 421 EKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFE 480
Query: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE
Sbjct: 481 YILKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIE 540
Query: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI
Sbjct: 541 NFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSI 600
Query: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK 652
KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK
Sbjct: 601 KKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKESLPPDCQK 652
>gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 449
Score = 49.3 bits (116), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 11/183 (6%)
Query: 258 IAEDGSGVIFWHRKGWKIFQTLISYMRR-KIKDDYEEINTPQVLDQHLWQQSGHWDSYRA 316
I + G+ W G K + + +R + + E++ P + LW +SG +DSY
Sbjct: 32 IHQHSKGIYSWLPLGQKALDNVNAIIREEQNRTGAIEMSVPTLQSADLWVESGRYDSYGK 91
Query: 317 NMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGS 376
M + +D + P + +F +KSYR LP + +R+E
Sbjct: 92 EMLRLADRND-----KAMIYGPTHEEVMTDIFRSHIKSYRNLPFTFYQIQLKFRDELRPR 146
Query: 377 LHGLMRVRGFTQDDAHVF-CTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRV 435
G+MR R F DA+ F T E + K+ + I+ G + I ++ + P +
Sbjct: 147 F-GVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVSYLRIFHRLGLKSIPMRAESGP---I 202
Query: 436 GSD 438
G D
Sbjct: 203 GGD 205
>gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 898
Score = 48.1 bits (113), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 10/183 (5%)
Query: 22 TGSDVAESISRSLA---KKAVAVAINGKVCDLSDPVREGSIEIITPEDPRSLAVIRHSCA 78
TG + + I + KKA + ++ + + E S+ + R I HS
Sbjct: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590
Query: 79 HIMAEAVQSIW-PEVQVAIGPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFL 137
H++ A+ +I V I DG +D +P +S EL IE + +IIA++ P +
Sbjct: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650
Query: 138 KQYLSHEKARELFESKKEAYKVEILESIPAKENVTLYRQGEWFD--LCRGPHVRSTGQVK 195
+ ++ E A + K + + E Y G LC G HV STG++
Sbjct: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHVSSTGEIM 706
Query: 196 KFF 198
+
Sbjct: 707 LLY 709
>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 864
Score = 28.1 bits (61), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 521 VMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYA 568
+ + A+ ++R ++ + + + L P+ ++VT +TSSAVE A
Sbjct: 736 TLANGALLPYMDRLTKLVSKGDRAAIGGLLGPVPSMVTNLTSSAVELA 783
>gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 707
Score = 26.2 bits (56), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 19 VHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREGSIEII 62
HA V E+ R+ KK + + D+SD RE S+E++
Sbjct: 210 AHARDPRVFENFMRAFYKKGHPPKDSTSLSDVSDSARERSLEVV 253
>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 408
Score = 25.8 bits (55), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 226 NTQQELTQYLYFLEESEKRDHRKLAREMDL 255
TQQ+L + L + +K R LAREM L
Sbjct: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGL 209
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 25.4 bits (54), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 168 KENVTLYRQGEWFDLCRGPHVRSTGQV 194
KE+V + + D+ GP +RSTG+V
Sbjct: 980 KESVFPFNKFPGVDILLGPEMRSTGEV 1006
>gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 324
Score = 25.0 bits (53), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 97 GPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHE--KARELFES 152
GP++ + F +DF +E ++ + EI +D LK Y+ + KAR++ ES
Sbjct: 254 GPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILES 311
>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 699
Score = 24.6 bits (52), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 571 IANLLKSHHLSIETDFRNETINYKIREHSIKKIP 604
+A ++ L DF T+NY+ R +++ KIP
Sbjct: 41 LATVVYDRSLKDGQDFFPLTVNYQERTYAVGKIP 74
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 24.3 bits (51), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 38 AVAVAINGKV------CDLSDPVREGSIEIITPEDPRSLAVIRHSCAHIMAEAVQSIWPE 91
A A+A+N +V C DP+ S+E + E SL ++ H M +A +
Sbjct: 162 ARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIV--IVTHSMQQAARVSQRA 219
Query: 92 VQVAIGPIIEDGFYYDFDKEQPFSSDELAQ 121
+G ++E+ D DK SD+ Q
Sbjct: 220 AMFHMGHLVEED---DTDKMFTAPSDQRTQ 246
>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
Length = 404
Score = 24.3 bits (51), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 111 EQPFSSDELAQIEKKMQEIIARDSPFLKQ 139
++P S+++ +I + +I D P LK+
Sbjct: 284 DRPLSANDFVEIANRFDVVIINDIPLLKE 312
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,083
Number of Sequences: 1233
Number of extensions: 17923
Number of successful extensions: 62
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 13
length of query: 652
length of database: 328,796
effective HSP length: 80
effective length of query: 572
effective length of database: 230,156
effective search space: 131649232
effective search space used: 131649232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)