Query gi|254781005|ref|YP_003065418.1| hypothetical protein CLIBASIA_04530 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 23:54:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781005.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bma_A Glutamate dehydrogenase 22.2 36 0.0015 15.3 1.9 29 30-58 125-153 (470)
2 3k92_A NAD-GDH, NAD-specific g 16.9 59 0.0025 14.2 2.2 29 30-58 93-121 (424)
3 3mw9_A GDH 1, glutamate dehydr 16.6 58 0.0024 14.2 2.0 29 30-58 103-131 (501)
4 2ov7_A 50S ribosomal protein L 13.7 52 0.0022 14.5 1.1 28 42-72 51-78 (137)
5 1bgv_A Glutamate dehydrogenase 13.2 75 0.0032 13.6 2.4 29 30-58 102-130 (449)
6 1v9l_A Glutamate dehydrogenase 12.0 83 0.0035 13.4 2.5 29 30-58 82-110 (421)
7 1leh_A Leucine dehydrogenase; 11.1 88 0.0037 13.2 2.4 26 33-58 60-85 (364)
8 1gtm_A Glutamate dehydrogenase 10.9 90 0.0038 13.2 2.0 29 30-58 81-109 (419)
9 3ig9_A SOC small outer capsid 10.8 33 0.0014 15.5 -0.6 30 43-78 8-37 (78)
10 1t62_A Conserved hypothetical 9.9 98 0.0041 13.0 2.0 43 31-73 36-80 (166)
No 1
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=22.17 E-value=36 Score=15.33 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 28999999999887531676777543325
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetl 58 (85)
-+.-|+..|.-.-.-++-|+||||.|-..
T Consensus 125 evk~La~~MT~KnAl~gLP~GGgKGGi~~ 153 (470)
T 2bma_A 125 IVKFLGFEQIFKNSLTGLSMGGGKGGSDF 153 (470)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 99999999999998608997772359952
No 2
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=16.95 E-value=59 Score=14.17 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 28999999999887531676777543325
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetl 58 (85)
-+..|...|.-.-.-++-|+||||.|-..
T Consensus 93 ev~~LA~~MT~K~Ala~lp~GGgKggI~~ 121 (424)
T 3k92_A 93 KVKALSIWMTLKCGIANLPYGGGKGGIIC 121 (424)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 99999998778875079998885668824
No 3
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Probab=16.63 E-value=58 Score=14.21 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 28999999999887531676777543325
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetl 58 (85)
-+..|...|.-.-.-++-|.||||.|-.+
T Consensus 103 ev~~LA~~MT~K~Al~~lP~GGgKggI~~ 131 (501)
T 3mw9_A 103 EVKALASLMTYKCAVVDVPFGGAKAGVKI 131 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 99999989889999728998883269953
No 4
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=13.67 E-value=52 Score=14.47 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=20.5
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 8753167677754332555787077853541
Q gi|254781005|r 42 RKKADQPIGGGKTGETLPKGGGRKISLDSNN 72 (85)
Q Consensus 42 rkkadqpigggktgetlpkgggrkisldsnn 72 (85)
-+++||-+-| .-.||+||+-.+-.|.+.
T Consensus 51 Pkk~dq~vRg---~v~LP~gg~ve~r~DK~g 78 (137)
T 2ov7_A 51 PRRSDQNVRG---TVSLPHGGRIEFRNDKTG 78 (137)
T ss_dssp TTCSSCCCEE---EEECTTSCEEEEECCTTS
T ss_pred CCCCCCCHHH---HHHCHHHCCCCCCCCCCC
T ss_conf 5644401204---564656517600257887
No 5
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A
Probab=13.24 E-value=75 Score=13.61 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 28999999999887531676777543325
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetl 58 (85)
-+..|...|.-.-.-++-|+||||.|-..
T Consensus 102 ev~~LA~~MT~K~Al~glp~GGgKggI~~ 130 (449)
T 1bgv_A 102 IMKFLGFEQAFKDSLTTLPMGGAKGGSDF 130 (449)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCEEEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEECC
T ss_conf 99999999999999717997774448816
No 6
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1
Probab=12.00 E-value=83 Score=13.40 Aligned_cols=29 Identities=24% Similarity=0.254 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 28999999999887531676777543325
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetl 58 (85)
-+..|..-|.-.-.-++-|.||||.|-.+
T Consensus 82 ev~~LA~~MT~K~al~~lp~GG~KggI~~ 110 (421)
T 1v9l_A 82 DDVALAILMTLKNSLAGLPYGGAKGAVRV 110 (421)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 99999989899999838997777658967
No 7
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=11.14 E-value=88 Score=13.24 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999887531676777543325
Q gi|254781005|r 33 ELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 33 elgarmkqerkkadqpigggktgetl 58 (85)
.|...|.-.-.-++.|.||||.|-..
T Consensus 60 ~LA~~MT~K~al~~lp~GGgKggI~~ 85 (364)
T 1leh_A 60 RLARGMTYKNAAAGLNLGGGKTVIIG 85 (364)
T ss_dssp HHHHHHHHHHHHTTCSCEEEEEEEES
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 99999999998606998874899947
No 8
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus dsm 3638} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=10.85 E-value=90 Score=13.18 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 28999999999887531676777543325
Q gi|254781005|r 30 GIRELGARMKQERKKADQPIGGGKTGETL 58 (85)
Q Consensus 30 girelgarmkqerkkadqpigggktgetl 58 (85)
-+..|...|.-.-.-++-|+||||.|-.+
T Consensus 81 ev~~LA~~MT~K~Al~~lp~GGgKggI~~ 109 (419)
T 1gtm_A 81 TVKALAAWMTWKTAVMDLPYGGGKGGIIV 109 (419)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEECC
T ss_conf 99999999899999708998885648756
No 9
>3ig9_A SOC small outer capsid protein; alpha/beta structure, viral protein; 1.90A {Enterobacteria phage RB69} PDB: 3ige_A
Probab=10.79 E-value=33 Score=15.49 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=20.9
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 753167677754332555787077853541035765
Q gi|254781005|r 43 KKADQPIGGGKTGETLPKGGGRKISLDSNNLSTELR 78 (85)
Q Consensus 43 kkadqpigggktgetlpkgggrkisldsnnlstelr 78 (85)
|..+||.|.|++- +|++||.+-+-.|.+-|
T Consensus 8 KTf~~~~g~g~~i------~g~eiSV~F~lYSnvhr 37 (78)
T 3ig9_A 8 KTFTHPAGEGKEV------KGMEVSVPFEIYSNEHR 37 (78)
T ss_dssp EECCEECSTTEEE------CCCEEEEEHHHHHHSCC
T ss_pred EEEEEECCCCCEE------CCEEEEEEEEEECCCCC
T ss_conf 8887786999778------26088765331024000
No 10
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein structure initiative; 3.00A {Enterococcus faecalis V583} SCOP: b.122.1.4
Probab=9.88 E-value=98 Score=12.99 Aligned_cols=43 Identities=30% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCEEEEECCCCH
Q ss_conf 899999999988753167--6777543325557870778535410
Q gi|254781005|r 31 IRELGARMKQERKKADQP--IGGGKTGETLPKGGGRKISLDSNNL 73 (85)
Q Consensus 31 irelgarmkqerkkadqp--igggktgetlpkgggrkisldsnnl 73 (85)
.-+|.+-+..-+|.|.-. -.-...+|.||+-|...|-||+++-
T Consensus 36 ad~L~~LVl~G~KTAT~s~~~~y~~e~e~lP~vG~~~IvlD~~g~ 80 (166)
T 1t62_A 36 GNRLGQLVVSGRKTATCSSLDIYKMEEEQLPKAGQYDIILDGQSQ 80 (166)
T ss_dssp HHHHHHHHHHTSCCEEEEESTTSCTTTCCCCCTTCEEEEECTTSC
T ss_pred HHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf 999999997498068750787773379989997888899859998
Done!