BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781005|ref|YP_003065418.1| hypothetical protein
CLIBASIA_04530 [Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781005|ref|YP_003065418.1| hypothetical protein CLIBASIA_04530 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040682|gb|ACT57478.1| hypothetical protein CLIBASIA_04530 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/85 (100%), Positives = 85/85 (100%)

Query: 1  MDIKGLIVASLISSTVIMSGCSETLDPENGIRELGARMKQERKKADQPIGGGKTGETLPK 60
          MDIKGLIVASLISSTVIMSGCSETLDPENGIRELGARMKQERKKADQPIGGGKTGETLPK
Sbjct: 1  MDIKGLIVASLISSTVIMSGCSETLDPENGIRELGARMKQERKKADQPIGGGKTGETLPK 60

Query: 61 GGGRKISLDSNNLSTELRSQNFLRK 85
          GGGRKISLDSNNLSTELRSQNFLRK
Sbjct: 61 GGGRKISLDSNNLSTELRSQNFLRK 85


>gi|254780886|ref|YP_003065299.1| hypothetical protein CLIBASIA_03915 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040563|gb|ACT57359.1| hypothetical protein CLIBASIA_03915 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 41

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/41 (48%), Positives = 31/41 (75%)

Query: 1  MDIKGLIVASLISSTVIMSGCSETLDPENGIRELGARMKQE 41
          M+ KGLIVAS+ISST IMS CS + + ++ IR++   +K++
Sbjct: 1  MNAKGLIVASIISSTAIMSSCSYSWNLKHAIRKIEIAIKEQ 41


>gi|172038315|ref|YP_001804816.1| putative sulfite oxidase subunit YedY [Cyanothece sp. ATCC 51142]
 gi|171699769|gb|ACB52750.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 327

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 10/84 (11%)

Query: 3   IKGLIVASLISSTVIMSGCSETLDP---ENGIRE---LGARMKQERKKADQP----IGGG 52
           +KG+I AS+ SS + +SGC ++      E  +++    G +   E  + D+P    I  G
Sbjct: 30  LKGMIGASIASSLIPLSGCQKSASQTALEATLQKPKIPGVKTSPEFSQVDRPMTKEILAG 89

Query: 53  KTGETLPKGGGRKISLDSNNLSTE 76
           +       GG +KI L++ NL TE
Sbjct: 90  QYNNFYEFGGNKKIWLNAQNLPTE 113


>gi|67925647|ref|ZP_00518967.1| Oxidoreductase, molybdopterin binding [Crocosphaera watsonii WH
           8501]
 gi|67852508|gb|EAM47947.1| Oxidoreductase, molybdopterin binding [Crocosphaera watsonii WH
           8501]
          Length = 327

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 3   IKGLIVASLISSTVIMSGCSETLDPE------NGIRELGARMKQERKKADQP----IGGG 52
           +KG+I AS+  S + +SGC ++           G +  G +   +  + D+P    I  G
Sbjct: 30  LKGIIGASIAGSLIPLSGCQKSASQTALEATLQGTKIPGVKTSPKFSQVDRPMTKEILAG 89

Query: 53  KTGETLPKGGGRKISLDSNNLSTE 76
           +       GG +KI L++ NL TE
Sbjct: 90  QYNNFYEFGGTKKIWLNAQNLPTE 113


>gi|251793774|ref|YP_003008504.1| lipoprotein VacJ [Aggregatibacter aphrophilus NJ8700]
 gi|247535171|gb|ACS98417.1| lipoprotein VacJ [Aggregatibacter aphrophilus NJ8700]
          Length = 258

 Score = 35.4 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 22/27 (81%)

Query: 7  IVASLISSTVIMSGCSETLDPENGIRE 33
          ++A+L+  +V+++GCS T+DPE G R+
Sbjct: 17 LLAALLLGSVVLTGCSSTIDPETGERK 43


>gi|261866860|ref|YP_003254782.1| lipoprotein VacJ [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|293391047|ref|ZP_06635381.1| lipoprotein VacJ [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|261412192|gb|ACX81563.1| lipoprotein VacJ [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|290951581|gb|EFE01700.1| lipoprotein VacJ [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 258

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 22/27 (81%)

Query: 7  IVASLISSTVIMSGCSETLDPENGIRE 33
          ++A+L+  +V+++GCS T+DPE G R+
Sbjct: 17 LLAALLLGSVVLAGCSSTIDPETGERK 43


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.132    0.358 

Lambda     K      H
   0.267   0.0407    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 705,545,324
Number of Sequences: 14124377
Number of extensions: 24340140
Number of successful extensions: 46614
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 46610
Number of HSP's gapped (non-prelim): 6
length of query: 85
length of database: 4,842,793,630
effective HSP length: 55
effective length of query: 30
effective length of database: 4,065,952,895
effective search space: 121978586850
effective search space used: 121978586850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 75 (33.5 bits)