Query gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 411
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 23:41:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781007.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mf7_A Integrin alpha M; cell 64.1 6.8 0.00029 17.9 5.4 50 345-394 136-190 (194)
2 1shu_X Anthrax toxin receptor 53.5 10 0.00043 16.7 7.7 77 301-391 102-179 (182)
3 2b2x_A Integrin alpha-1; compu 49.8 12 0.00049 16.3 8.7 78 303-394 125-212 (223)
4 1pt6_A Integrin alpha-1; X-RAY 45.8 13 0.00056 15.9 7.7 77 303-393 110-196 (213)
5 3gxb_A VON willebrand factor; 42.0 15 0.00063 15.5 4.9 49 344-394 127-175 (184)
6 1v7p_C Integrin alpha-2; snake 36.5 18 0.00077 14.9 4.3 51 344-394 136-196 (200)
7 3kp1_E D-ornithine aminomutase 27.8 12 0.0005 16.2 0.3 38 34-78 65-102 (121)
8 1n3y_A Integrin alpha-X; alpha 27.2 26 0.0011 13.9 5.2 78 303-393 111-193 (198)
9 3kmp_A SMAD1-MH1; protein-DNA 24.9 14 0.00058 15.8 0.2 12 223-234 111-122 (124)
10 1ozj_A SMAD 3; MAD homology do 24.3 15 0.00063 15.5 0.3 16 220-235 116-131 (144)
11 1v9v_A KIAA0561 protein; helix 23.9 29 0.0012 13.5 2.1 39 49-88 10-49 (114)
12 2v6z_M DNA polymerase epsilon 22.8 29 0.0012 13.4 1.6 18 315-332 81-98 (99)
No 1
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 1n9z_A 1bhq_1 1bho_1 1idn_1
Probab=64.09 E-value=6.8 Score=17.91 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=36.1
Q ss_pred EEEEEEEECCCCCCH---HHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHHH
Q ss_conf 168997404887420---2678763059032--0442587653447898777778
Q gi|254781007|r 345 AITIFSVGFSPDQDT---RYTLRQCASDPSK--YYEINSDENVMPIAKSLARNVI 394 (411)
Q Consensus 345 aitifsvgfspdqdt---rytlrqcasdpsk--yyeinsdenvmpiakslarnvi 394 (411)
.|++|.||+..+-.. .-.|+.+|++|+. .|.+.+-+..-.+.+.+++...
T Consensus 136 gv~v~~Vgi~~~~~~~~~~~~L~~iAs~~~~~~~~~v~~~~~L~~~~~~l~~~i~ 190 (194)
T 1mf7_A 136 GVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIF 190 (194)
T ss_dssp TEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 9999999978876663469999998669986608994999999999999987641
No 2
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=53.51 E-value=10 Score=16.70 Aligned_cols=77 Identities=14% Similarity=0.200 Sum_probs=42.2
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCC-
Q ss_conf 6770799997345100333028999999998599887511476416899740488742026787630590320442587-
Q gi|254781007|r 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSD- 379 (411)
Q Consensus 301 sqnkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtrytlrqcasdpskyyeinsd- 379 (411)
..++.++++.-|..-+..+...++..+. +++ ..|.+|.||+... | .-.|++.|++|...|...++
T Consensus 102 ~~~~~ivllTDG~~~~~~~~~~~~~a~~------l~~------~gv~v~~Vgig~~-~-~~~L~~ia~~~~~~~~~~~~~ 167 (182)
T 1shu_X 102 KTSSIIIALTDGKLDGLVPSYAEKEAKI------SRS------LGASVYCVGVLDF-E-QAQLERIADSKEQVFPVKGGF 167 (182)
T ss_dssp GSCEEEEEEECCCCCTTHHHHHHHHHHH------HHH------TTCEEEEEECSSC-C-HHHHHHHSSSGGGEEESSSTT
T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHH------HHH------CCCEEEEEEECCC-C-HHHHHHHHCCCCCEEEECCCH
T ss_conf 8855999997288788864899999999------997------8999999984754-8-999999858999669934999
Q ss_pred CCHHHHHHHHHH
Q ss_conf 653447898777
Q gi|254781007|r 380 ENVMPIAKSLAR 391 (411)
Q Consensus 380 envmpiakslar 391 (411)
+..-.+.+.+++
T Consensus 168 ~~L~~~~~~i~~ 179 (182)
T 1shu_X 168 QALKGIINSILA 179 (182)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999986
No 3
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune system; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=49.75 E-value=12 Score=16.30 Aligned_cols=78 Identities=22% Similarity=0.522 Sum_probs=49.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHH--------HHHHHHCCCCHH--
Q ss_conf 7079999734510033302899999999859988751147641689974048874202--------678763059032--
Q gi|254781007|r 303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR--------YTLRQCASDPSK-- 372 (411)
Q Consensus 303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtr--------ytlrqcasdpsk-- 372 (411)
.|.++++.-|. +.. ...++.+.+... ...|+||.||..++-+.. -.|++-||+|+.
T Consensus 125 ~kvlillTDG~--~~d---~~~~~~~a~~lk---------~~gi~v~~Igvg~~~~~~~~~~~~~~~eL~~IAs~p~~~~ 190 (223)
T 2b2x_A 125 KKVMVIVTDGE--SHD---NYRLKQVIQDCE---------DENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKH 190 (223)
T ss_dssp EEEEEEEESSC--CTT---GGGHHHHHHHHH---------TTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGT
T ss_pred CEEEEEEECCC--CCC---CHHHHHHHHHHH---------HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 25799982698--788---312999999998---------7599899999846666443244236999999866998551
Q ss_pred EEEECCCCCHHHHHHHHHHHHH
Q ss_conf 0442587653447898777778
Q gi|254781007|r 373 YYEINSDENVMPIAKSLARNVI 394 (411)
Q Consensus 373 yyeinsdenvmpiakslarnvi 394 (411)
.|.+.+-+....+.+.|+..+.
T Consensus 191 ~f~~~d~~~L~~i~~~l~~~ic 212 (223)
T 2b2x_A 191 FFNVSDELALVTIVKALGERIF 212 (223)
T ss_dssp EEEESSTTGGGGGHHHHHTTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHC
T ss_conf 8981899999999999998864
No 4
>1pt6_A Integrin alpha-1; X-RAY diffraction, cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=45.84 E-value=13 Score=15.89 Aligned_cols=77 Identities=22% Similarity=0.534 Sum_probs=48.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCH--------HHHHHHHCCCCHH--
Q ss_conf 707999973451003330289999999985998875114764168997404887420--------2678763059032--
Q gi|254781007|r 303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDT--------RYTLRQCASDPSK-- 372 (411)
Q Consensus 303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdt--------rytlrqcasdpsk-- 372 (411)
.|.++++.=|.- .. ...++...+... ...|+||.||..++-+. .-.|+..||+|+.
T Consensus 110 ~k~villTDG~~--~d---~~~~~~~~~~lk---------~~gi~v~~Vgvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~ 175 (213)
T 1pt6_A 110 KKVMVIVTDGES--HD---NHRLKKVIQDCE---------DENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKH 175 (213)
T ss_dssp EEEEEEEESSCC--SC---SHHHHHHHHHHH---------HTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHH
T ss_pred EEEEEEEECCCC--CC---CHHHHHHHHHHH---------HCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCE
T ss_conf 689999846987--88---415999999999---------8899999999747655454333246999999866998540
Q ss_pred EEEECCCCCHHHHHHHHHHHH
Q ss_conf 044258765344789877777
Q gi|254781007|r 373 YYEINSDENVMPIAKSLARNV 393 (411)
Q Consensus 373 yyeinsdenvmpiakslarnv 393 (411)
+|.+.+.+....|.+.|...+
T Consensus 176 ~f~~~~~~~L~~i~~~l~~~i 196 (213)
T 1pt6_A 176 FFNVSDELALVTIVKTLGERI 196 (213)
T ss_dssp EEEESSGGGGGGGHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHH
T ss_conf 898089999999999999997
No 5
>3gxb_A VON willebrand factor; VWA-like fold, blood coagulation, cell adhesion, cleavage on PAIR of basic residues, disease mutation, disulfide bond; HET: NAG; 1.90A {Homo sapiens}
Probab=42.02 E-value=15 Score=15.50 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=33.4
Q ss_pred CEEEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 416899740488742026787630590320442587653447898777778
Q gi|254781007|r 344 DAITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVI 394 (411)
Q Consensus 344 daitifsvgfspdqdtrytlrqcasdpskyyeinsdenvmpiakslarnvi 394 (411)
..|+||.||..++-|.. .|+..|+ |++++.+++-+..-.+...+...+.
T Consensus 127 ~gi~i~~vgvG~~~~~~-~L~~ia~-~~~~~~~~~~~~L~~~~~~l~~~~c 175 (184)
T 3gxb_A 127 GDIQVVPIGVGPNANVQ-ELERIGW-PNAPILIQDFETLPREAPDLVLQRC 175 (184)
T ss_dssp TTEEEEEEEESTTSCHH-HHHHHHT-TSCCEEESCTTTHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHH-HHHHHCC-CCCEEEECCHHHHHHHHHHHHHHHC
T ss_conf 89989999846747999-9998739-9977994899999999999997546
No 6
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhesion, glycoprotein, toxin/cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=36.46 E-value=18 Score=14.91 Aligned_cols=51 Identities=16% Similarity=0.347 Sum_probs=35.4
Q ss_pred CEEEEEEEECCCCCCH--------HHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHHH
Q ss_conf 4168997404887420--------2678763059032--0442587653447898777778
Q gi|254781007|r 344 DAITIFSVGFSPDQDT--------RYTLRQCASDPSK--YYEINSDENVMPIAKSLARNVI 394 (411)
Q Consensus 344 daitifsvgfspdqdt--------rytlrqcasdpsk--yyeinsdenvmpiakslarnvi 394 (411)
..|.+|.||..+..+. .-.|+..||+|+. .|.+.+-+....+.+.|++.+.
T Consensus 136 ~gi~i~~Igvg~~~~~~~~~~~~~~~eL~~iAs~p~~~~~f~~~d~~~L~~~~~~l~~~ic 196 (200)
T 1v7p_C 136 DNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIF 196 (200)
T ss_dssp TTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 8909999997774455654431259999998669986139993899999999999997720
No 7
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=27.84 E-value=12 Score=16.21 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHH
Q ss_conf 999999876677776667899998776520683323667741223
Q gi|254781007|r 34 VAIVDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRD 78 (411)
Q Consensus 34 vaivdvvvdqvtvmqktawlqevldhviyrtspknlydlreagrd 78 (411)
-+||+-|++. ..|.|-| .|+.||-+.+.--++||||+.
T Consensus 65 k~iVe~v~~~-gLlgKGA------GhvV~k~ak~~~i~i~eAG~~ 102 (121)
T 3kp1_E 65 KAIVDKTMDR-GLMGKGA------GHIVYKIAKEKNISVREAGLA 102 (121)
T ss_dssp HHHHHHHHHT-TCGGGCH------HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHH-CCCCCCC------CHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999980-5445775------532235797629988999999
No 8
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=27.16 E-value=26 Score=13.87 Aligned_cols=78 Identities=17% Similarity=0.322 Sum_probs=42.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCH---HHHHHHHCCCCHH--EEEEC
Q ss_conf 707999973451003330289999999985998875114764168997404887420---2678763059032--04425
Q gi|254781007|r 303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDT---RYTLRQCASDPSK--YYEIN 377 (411)
Q Consensus 303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdt---rytlrqcasdpsk--yyein 377 (411)
.|.++++.-|..- .+..+-+. +.+.+. .-.+.+|.||..++.+. .-.|+..|+.|+. ++.++
T Consensus 111 ~kvivlltDG~~~-~~~~~~~~---~~~~~~---------~~gv~i~~Ig~g~~~~~~~~~~~L~~ias~~~~~~~~~~~ 177 (198)
T 1n3y_A 111 AKILIVITDGKKE-GDSLDYKD---VIPMAD---------AAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVE 177 (198)
T ss_dssp EEEEEEEESSCCB-SCSSCHHH---HHHHHH---------HTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEES
T ss_pred CCEEEEEECCCCC-CCCCCHHH---HHHHHH---------HCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEC
T ss_conf 4259999358988-87205999---999999---------7898899999787667753499999986699865199929
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 8765344789877777
Q gi|254781007|r 378 SDENVMPIAKSLARNV 393 (411)
Q Consensus 378 sdenvmpiakslarnv 393 (411)
+-+..-.+.+.+.+.+
T Consensus 178 ~~~~L~~i~~~l~~~i 193 (198)
T 1n3y_A 178 DFDALKDIQNQLKEKI 193 (198)
T ss_dssp SGGGGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 9999999999999873
No 9
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus}
Probab=24.92 E-value=14 Score=15.78 Aligned_cols=12 Identities=42% Similarity=1.301 Sum_probs=10.0
Q ss_pred CEECCCCHHHHH
Q ss_conf 200272023443
Q gi|254781007|r 223 NFCMAPYHYSSI 234 (411)
Q Consensus 223 nfcmapyhyssi 234 (411)
..|.-|||||-|
T Consensus 111 ~VC~NPyHy~Rv 122 (124)
T 3kmp_A 111 EVCINPYHYKRV 122 (124)
T ss_dssp EEECCGGGEEEC
T ss_pred CEEECCCCHHHC
T ss_conf 288687226540
No 10
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=24.28 E-value=15 Score=15.53 Aligned_cols=16 Identities=31% Similarity=0.856 Sum_probs=11.8
Q ss_pred CCCCEECCCCHHHHHH
Q ss_conf 7432002720234434
Q gi|254781007|r 220 PYKNFCMAPYHYSSIL 235 (411)
Q Consensus 220 pyknfcmapyhyssil 235 (411)
-+...|.-||||+-+-
T Consensus 116 ~~~~VC~NPYHy~Rv~ 131 (144)
T 1ozj_A 116 KKDEVCVNPYHYQRVE 131 (144)
T ss_dssp CCSEEECCGGGEEECC
T ss_pred CCCEEEECCCHHHHCC
T ss_conf 9981883840263412
No 11
>1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated serine/threonine protein kinase, structural genomics; NMR {Homo sapiens} SCOP: a.29.10.1
Probab=23.86 E-value=29 Score=13.46 Aligned_cols=39 Identities=33% Similarity=0.381 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH-HHH
Q ss_conf 6678999987765206833236677412235789999-987
Q gi|254781007|r 49 KTAWLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQI-EKA 88 (411)
Q Consensus 49 ktawlqevldhviyrtspknlydlreagrdnfirhqi-eka 88 (411)
.||-..|-|.+.|-.-+|.+...+. .|--+|+.||| |-|
T Consensus 10 AtaQMEerL~~fi~~~~~~~~~~la-Dgvl~FvhHQiiElA 49 (114)
T 1v9v_A 10 ATAQMEGRLQEFLTAYAPGARLALA-DGVLGFIHHQIVELA 49 (114)
T ss_dssp TTHHHHHHHHHHHHHSCBTTTBCCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHH
T ss_conf 1899999999999976962344113-889999999999999
No 12
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=22.84 E-value=29 Score=13.43 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 003330289999999985
Q gi|254781007|r 315 LSRSSVEKEKIEKVLQDC 332 (411)
Q Consensus 315 lsrssvekekiekvlqdc 332 (411)
|+-+-||++-||+.+|+|
T Consensus 81 LsS~~Iek~~iE~AVkEC 98 (99)
T 2v6z_M 81 LSSNMIERSVVEAAVQES 98 (99)
T ss_dssp CSSSEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHC
T ss_conf 980151399999999863
Done!