Query gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 411 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:06:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781007.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1pt6a_ c.62.1.1 (A:) Integrin 50.7 6.5 0.00047 16.4 7.4 86 294-393 91-190 (192) 2 d1mf7a_ c.62.1.1 (A:) Integrin 47.7 7.2 0.00052 16.1 5.1 50 344-393 135-189 (194) 3 d1n3ya_ c.62.1.1 (A:) Integrin 37.4 10 0.00074 15.0 4.9 78 303-393 104-186 (189) 4 d1shux_ c.62.1.1 (X:) Capillar 35.3 11 0.0008 14.8 7.8 45 345-391 133-178 (181) 5 d1ozja_ d.164.1.1 (A:) SMAD MH 30.6 5.6 0.00041 16.8 0.3 14 221-234 111-124 (126) 6 d1q0pa_ c.62.1.1 (A:) Compleme 26.0 15 0.0011 13.7 6.1 42 343-385 153-197 (209) 7 d1ijba_ c.62.1.1 (A:) von Will 22.8 18 0.0013 13.3 8.3 78 301-391 114-193 (202) 8 d1rq2a1 c.32.1.1 (A:8-205) Cel 21.3 18 0.0013 13.2 1.5 24 153-176 107-130 (198) 9 d1v9va1 a.29.10.1 (A:8-108) Mi 19.1 21 0.0015 12.8 2.1 39 49-88 3-42 (101) 10 d1v7pc_ c.62.1.1 (C:) Integrin 18.9 21 0.0015 12.8 4.2 50 344-393 131-190 (193) No 1 >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} Probab=50.71 E-value=6.5 Score=16.40 Aligned_cols=86 Identities=23% Similarity=0.554 Sum_probs=51.0 Q ss_pred CCCC--CCCCCC--CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHH--------H Q ss_conf 4344--676677--079999734510033302899999999859988751147641689974048874202--------6 Q gi|254781007|r 294 HCFP--HGASQN--KYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR--------Y 361 (411) Q Consensus 294 hcfp--hgasqn--kymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtr--------y 361 (411) ++|. .|+.+| |.++++.=|.. .. ...++.+.+... ...|++|.+|..+.-+.. - T Consensus 91 ~~~~~~~g~R~~~~kviillTDG~~--~d---~~~~~~~a~~lk---------~~gi~v~~igvg~~~~~~~~~~~~~~~ 156 (192) T d1pt6a_ 91 EAFTEARGARRGVKKVMVIVTDGES--HD---NHRLKKVIQDCE---------DENIQRFSIAILGSYNRGNLSTEKFVE 156 (192) T ss_dssp TTTSGGGTCCTTCEEEEEEEESSCC--SC---SHHHHHHHHHHH---------HTTEEEEEEEECHHHHHTTCCCHHHHH T ss_pred HHHCCCCCCCCCCCEEEEEEECCCC--CC---CHHHHHHHHHHH---------HCCCEEEEEEEECCCCCCCCCCCCCHH T ss_conf 6301235898886158999966887--76---302699999999---------779969999970555545434313699 Q ss_pred HHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHH Q ss_conf 78763059032--044258765344789877777 Q gi|254781007|r 362 TLRQCASDPSK--YYEINSDENVMPIAKSLARNV 393 (411) Q Consensus 362 tlrqcasdpsk--yyeinsdenvmpiakslarnv 393 (411) .|+..||+|+. .|.+.+-+..-.+.+.+.+.+ T Consensus 157 ~L~~IAs~p~~~~~f~v~d~~~L~~i~~~i~~~I 190 (192) T d1pt6a_ 157 EIKSIASEPTEKHFFNVSDELALVTIVKTLGERI 190 (192) T ss_dssp HHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHH T ss_pred HHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHH T ss_conf 9999866998550898389999999999998885 No 2 >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} Probab=47.72 E-value=7.2 Score=16.09 Aligned_cols=50 Identities=20% Similarity=0.422 Sum_probs=33.3 Q ss_pred CEEEEEEEECCCCC---CHHHHHHHHCCCCHH--EEEECCCCCHHHHHHHHHHHH Q ss_conf 41689974048874---202678763059032--044258765344789877777 Q gi|254781007|r 344 DAITIFSVGFSPDQ---DTRYTLRQCASDPSK--YYEINSDENVMPIAKSLARNV 393 (411) Q Consensus 344 daitifsvgfspdq---dtrytlrqcasdpsk--yyeinsdenvmpiakslarnv 393 (411) ..|+||.||+...- -....|+..||+|.. +|.+++-+..-.++..|...+ T Consensus 135 ~gv~i~~VGi~~~~~~~~~~~~L~~ias~~~~~~~~~~~~~~~L~~~~~~l~~~i 189 (194) T d1mf7a_ 135 EGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKI 189 (194) T ss_dssp TTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHH T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHH T ss_conf 5990599805776665256999999965998771999599999999999998876 No 3 >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} Probab=37.37 E-value=10 Score=15.01 Aligned_cols=78 Identities=18% Similarity=0.357 Sum_probs=44.1 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHH---HHHHHCCCCHH--EEEEC Q ss_conf 70799997345100333028999999998599887511476416899740488742026---78763059032--04425 Q gi|254781007|r 303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRY---TLRQCASDPSK--YYEIN 377 (411) Q Consensus 303 nkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtry---tlrqcasdpsk--yyein 377 (411) .|.++++.-|..-. +..+-+. +.+.+ ....+++|.||+.++.+... .|+..|+.|+. .|..+ T Consensus 104 ~kvivllTDG~~~~-~~~~~~~---~~~~~---------~~~gv~i~~Vgig~~~~~~~~~~~L~~ias~~~~~~~~~~~ 170 (189) T d1n3ya_ 104 AKILIVITDGKKEG-DSLDYKD---VIPMA---------DAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVE 170 (189) T ss_dssp EEEEEEEESSCCBS-CSSCHHH---HHHHH---------HHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEES T ss_pred CEEEEEEECCCCCC-CCCCHHH---HHHHH---------HHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEC T ss_conf 32799995689888-8323999---99999---------98799438983365556633399999996699866089828 Q ss_pred CCCCHHHHHHHHHHHH Q ss_conf 8765344789877777 Q gi|254781007|r 378 SDENVMPIAKSLARNV 393 (411) Q Consensus 378 sdenvmpiakslarnv 393 (411) +-+..-.+...+...+ T Consensus 171 ~~~~l~~i~~~i~~~i 186 (189) T d1n3ya_ 171 DFDALKDIQNQLKEKI 186 (189) T ss_dssp SGGGGGGGHHHHHHHH T ss_pred CHHHHHHHHHHHHHHC T ss_conf 9999999999999751 No 4 >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} Probab=35.26 E-value=11 Score=14.78 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=31.1 Q ss_pred EEEEEEEECCCCCCHHHHHHHHCCCCHHEEEECCCCC-HHHHHHHHHH Q ss_conf 1689974048874202678763059032044258765-3447898777 Q gi|254781007|r 345 AITIFSVGFSPDQDTRYTLRQCASDPSKYYEINSDEN-VMPIAKSLAR 391 (411) Q Consensus 345 aitifsvgfspdqdtrytlrqcasdpskyyeinsden-vmpiakslar 391 (411) .+.+|.||+.+. .+-.|++.|++|...|...++-+ +-.+.+.+++ T Consensus 133 gv~v~~vgig~~--~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~ 178 (181) T d1shux_ 133 GASVYCVGVLDF--EQAQLERIADSKEQVFPVKGGFQALKGIINSILA 178 (181) T ss_dssp TCEEEEEECSSC--CHHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHH T ss_pred CCEEEEEEECCC--CHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH T ss_conf 988999996854--8999999848999659945999999999999986 No 5 >d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Probab=30.64 E-value=5.6 Score=16.82 Aligned_cols=14 Identities=36% Similarity=1.058 Sum_probs=11.0 Q ss_pred CCCEECCCCHHHHH Q ss_conf 43200272023443 Q gi|254781007|r 221 YKNFCMAPYHYSSI 234 (411) Q Consensus 221 yknfcmapyhyssi 234 (411) +...|.-|||||-| T Consensus 111 ~~~VC~NPyHy~Rv 124 (126) T d1ozja_ 111 KDEVCVNPYHYQRV 124 (126) T ss_dssp CSEEECCGGGEEEC T ss_pred CCCEEECCCCHHHC T ss_conf 98378587236440 No 6 >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} Probab=25.96 E-value=15 Score=13.72 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=29.7 Q ss_pred CCEEEEEEEECCCCCCHHHHHHHHCCCCH---HEEEECCCCCHHHH Q ss_conf 64168997404887420267876305903---20442587653447 Q gi|254781007|r 343 RDAITIFSVGFSPDQDTRYTLRQCASDPS---KYYEINSDENVMPI 385 (411) Q Consensus 343 rdaitifsvgfspdqdtrytlrqcasdps---kyyeinsdenvmpi 385 (411) ...|.+|.+|+.++.|. -.|+..|+.|. ++|.+++-+....+ T Consensus 153 ~~gi~i~~vgvg~~~~~-~~L~~iAs~~~~~~~~f~~~~~~~L~~~ 197 (209) T d1q0pa_ 153 EDYLDVYVFGVGPLVNQ-VNINALASKKDNEQHVFKVKDMENLEDV 197 (209) T ss_dssp GGGEEEEEEECSSCCCH-HHHHHHSCCCTTCCCEEETTC------- T ss_pred HCCCCEEEECCCCCCCH-HHHHHHHCCCCCCEEEEEECCHHHHHHH T ss_conf 66995598427766899-9999997498997159993899999999 No 7 >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} Probab=22.84 E-value=18 Score=13.32 Aligned_cols=78 Identities=13% Similarity=0.253 Sum_probs=42.0 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCHH--EEEECC Q ss_conf 677079999734510033302899999999859988751147641689974048874202678763059032--044258 Q gi|254781007|r 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDPSK--YYEINS 378 (411) Q Consensus 301 sqnkymlmlaignqlsrssvekekiekvlqdchymhkrhrtgrdaitifsvgfspdqdtrytlrqcasdpsk--yyeins 378 (411) ...|..+.+.-|..-.+++-.-+..-+-|+ ...|+||.||+.+.-+. -.|+..|++|++ +|.+.+ T Consensus 114 ~~~k~vivitdg~~~~~~~~~~~~~~~~l~------------~~gv~i~~Vgig~~~~~-~~L~~ia~~~~~~~~~~~~~ 180 (202) T d1ijba_ 114 EASRIALLLMASQEPQRMSRNFVRYVQGLK------------KKKVIVIPVGIGPHANL-KQIRLIEKQAPENKAFVLSS 180 (202) T ss_dssp TSEEEEEEEECCCCCGGGCTTHHHHHHHHH------------HTTEEEEEEEESTTSCH-HHHHHHHHHCTTCCCEEESS T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHH------------HCCCEEEEEEECCCCCH-HHHHHHHCCCCCCCEEEECC T ss_conf 775157885346888642168999999999------------85996899985785799-99999851899676899589 Q ss_pred CCCHHHHHHHHHH Q ss_conf 7653447898777 Q gi|254781007|r 379 DENVMPIAKSLAR 391 (411) Q Consensus 379 denvmpiakslar 391 (411) -+..-.+...+.. T Consensus 181 ~~~L~~~~~~i~~ 193 (202) T d1ijba_ 181 VDELEQQRDEIVS 193 (202) T ss_dssp GGGHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 8 >d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Probab=21.27 E-value=18 Score=13.24 Aligned_cols=24 Identities=17% Similarity=0.541 Sum_probs=17.3 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 355432333206663886300042 Q gi|254781007|r 153 ISRRKKVMYKQNIGLMIMPFAWDG 176 (411) Q Consensus 153 isrrkkvmykqniglmimpfawdg 176 (411) |++-.|-+..-.++...|||.|.| T Consensus 107 iA~iake~g~l~v~ivt~PF~~EG 130 (198) T d1rq2a1 107 VASIARKLGALTVGVVTRPFSFEG 130 (198) T ss_dssp HHHHHHHHTCEEEEEEEECCGGGC T ss_pred HHHHHHHCCCCEEEEEECCHHHHH T ss_conf 999999859928999955817778 No 9 >d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated serine/threonine-protein kinase 3, MAST3 (KIAA0561) {Human (Homo sapiens) [TaxId: 9606]} Probab=19.08 E-value=21 Score=12.79 Aligned_cols=39 Identities=33% Similarity=0.381 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHH-HHH Q ss_conf 6678999987765206833236677412235789999-987 Q gi|254781007|r 49 KTAWLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQI-EKA 88 (411) Q Consensus 49 ktawlqevldhviyrtspknlydlreagrdnfirhqi-eka 88 (411) .|+-..|-|.+.|-.-+|.+...+. .|--+|+.||| |-| T Consensus 3 At~QMEerL~~fi~~~~~~~~~~~a-Dgvl~FvhHQiiElA 42 (101) T d1v9va1 3 ATAQMEGRLQEFLTAYAPGARLALA-DGVLGFIHHQIVELA 42 (101) T ss_dssp TTHHHHHHHHHHHHHSCBTTTBCCS-CHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHH T ss_conf 6789999999999876972444114-899999999999999 No 10 >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} Probab=18.90 E-value=21 Score=12.77 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=30.8 Q ss_pred CEEEEEEEECCCCCCH--------HHHHHHHCCCCHH-E-EEECCCCCHHHHHHHHHHHH Q ss_conf 4168997404887420--------2678763059032-0-44258765344789877777 Q gi|254781007|r 344 DAITIFSVGFSPDQDT--------RYTLRQCASDPSK-Y-YEINSDENVMPIAKSLARNV 393 (411) Q Consensus 344 daitifsvgfspdqdt--------rytlrqcasdpsk-y-yeinsdenvmpiakslarnv 393 (411) ..|++|++|..+.-+. .-.|++.||+|.. | +.+.+-.....+...|...+ T Consensus 131 ~gv~v~~Igvg~~~~~~~~~~~~~~~~L~~Ias~p~~~~~f~v~d~~~L~~i~~~l~~~I 190 (193) T d1v7pc_ 131 DNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQI 190 (193) T ss_dssp TTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHH T ss_pred CCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHC T ss_conf 898999999677544444444125999999866987101898189999999999998651 Done!