BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781007|ref|YP_003065420.1| hypothetical protein
CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62]
         (411 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040684|gb|ACT57480.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 411

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/411 (100%), Positives = 411/411 (100%)

Query: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
           MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV
Sbjct: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60

Query: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
           IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL
Sbjct: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120

Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
           PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180

Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
           SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240

Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
           TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300

Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
           SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360

Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDSWRR 411
           YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDSWRR
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDSWRR 411


>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040591|gb|ACT57387.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040606|gb|ACT57402.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score =  851 bits (2199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/408 (99%), Positives = 407/408 (99%)

Query: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
           MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV
Sbjct: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60

Query: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
           IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSN GSIESIVKDAVILTKNVNSL
Sbjct: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120

Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
           PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180

Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
           SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240

Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
           TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300

Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
           SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360

Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
           YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408


>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039812|gb|ACT56608.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score =  743 bits (1917), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/408 (91%), Positives = 380/408 (93%)

Query: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
           MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTA LQEVLDHV
Sbjct: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60

Query: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
           IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSN GSIESIVKDAVILTKNVNSL
Sbjct: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120

Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
           PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180

Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
           SRGKVADS+VH PKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHY SI YWA  
Sbjct: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240

Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
              Y  DN       ++D Y  TWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300

Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
           S +KYMLM AIGNQLSRSSV KE I+++LQDC+YMHK HRTGR AITIFSVGFSPDQDTR
Sbjct: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360

Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
           YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408


>gi|315122409|ref|YP_004062898.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495811|gb|ADR52410.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 411

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 140/416 (33%), Positives = 221/416 (53%), Gaps = 21/416 (5%)

Query: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
           MF  +NFL    RL  CT G FL+++A+LLSSF+ I+D++ D   +++    LQ  +D+ 
Sbjct: 1   MFYYRNFLSVFSRLNHCTNGSFLIVSAVLLSSFLTIMDIMRDYTDMIRVRNMLQSSIDYA 60

Query: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
           ++  +P  L       R+  I+ +I   L++     L     I+ IV  + +     +  
Sbjct: 61  LH-NNPNELSVGTIKQREMLIKKRIGYFLDSNYKGTLLTEEQIKLIVNQSTVSITERSFY 119

Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
           P QF ++I L   +QL+  +L M    K   +IS+RK  +YK+N+ LM++PF W G W+ 
Sbjct: 120 PQQFHINIELHKNIQLKSLILHMAMNPKKDFNISQRKSSLYKKNVALMVVPFTWTGEWIP 179

Query: 181 SR---GKVADSKVHPPKYLEYSHYYQ-QYLN-RNTLVKNFLSQIPYKNFCMAPYHYSSIL 235
                 +   S+   P  L+  H+ + +Y N RN   K FLS+I   N C+APYHYS+I+
Sbjct: 180 PSLFTTQFTVSQDLLPSDLKTEHFKKTEYFNKRNQFFKMFLSKIKENNLCIAPYHYSAIV 239

Query: 236 YWAVGTLTYSVDNKTT----TREYYKDPYYATWDHFPYSFIKNVF---DMTSNQFGDGQV 288
           YW+ G  +Y +   TT     R+ Y   Y   WD  P ++I ++F   ++ SN+      
Sbjct: 240 YWSEGIFSYKLPFSTTFLYSFRDIYVKQYSTIWDMKPSNYILDLFAGAELHSNR------ 293

Query: 289 LTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRH-RTGRDAIT 347
           LT  + CF  G  Q K+ML++A GNQ+S      E   K+   C  M K   +  ++ IT
Sbjct: 294 LTPADPCFRRGVIQKKFMLIIAAGNQISDRKNSAEYF-KMKHGCTLMGKNMGKNPQEEIT 352

Query: 348 IFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTI 403
           ++S+G SPD DT+  L QC   P +YYEI S +++ P+   L RN+ + W   F+I
Sbjct: 353 VYSLGISPDPDTKRDLIQCTRHPDRYYEIQSYKDIAPVIDRLERNISSVWNDGFSI 408


>gi|294875617|ref|XP_002767406.1| synaptojanin, putative [Perkinsus marinus ATCC 50983]
 gi|239868969|gb|EER00124.1| synaptojanin, putative [Perkinsus marinus ATCC 50983]
          Length = 805

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 27/127 (21%)

Query: 62  YRTSPKNLYDLREA---GRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVN 118
           Y +SP  L D  +A   GR + +R     A   YN R L + G + + V+  ++L     
Sbjct: 242 YISSPTPLSDYLDAILIGRRSCLR-----AGTRYNHRGLDDLGDVANFVETELLLCNR-- 294

Query: 119 SLPLQFTVDIALSTTVQLRGSLLQMFSQSKG------KVDISRRKKVM---YKQNIGLMI 169
                   D+ L+  +Q+RGS+   +SQ+ G      ++DI+R K++    Y ++I  +I
Sbjct: 295 --------DVVLAAHIQIRGSVPVFWSQNPGSNSSTQQLDITRSKEMTVLGYDKHISSLI 346

Query: 170 MPFAWDG 176
             +  DG
Sbjct: 347 KRYGPDG 353


>gi|197386168|ref|NP_001127975.1| calmodulin regulated spectrin-associated protein 1-like 1 [Rattus
           norvegicus]
 gi|149058504|gb|EDM09661.1| similar to KIAA1078 protein (predicted) [Rattus norvegicus]
          Length = 1470

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 268 PYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEK 327
           P+  +K+   +++N+    +   NT+H  P+GA QN+ +L+   GNQ     +E   IE+
Sbjct: 488 PHGDLKSYMPLSTNELNSNE---NTHHKLPNGALQNR-VLLDEFGNQ-----IETPSIEE 538

Query: 328 VLQDCHYMHKRHRTGR 343
            LQ  H   K   T R
Sbjct: 539 ALQIIHDTEKPPHTAR 554


>gi|90420284|ref|ZP_01228192.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335618|gb|EAS49368.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 593

 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 314 QLSRSSVEKEKIEKVLQDCHYMHK--RHRTGRDAITIFSVGFSPDQDT--RYTLRQCAS- 368
           + +RSS      EKV   C  +    R  TG D I IF++ F  +  +  +  + QCAS 
Sbjct: 497 RANRSSFVSAMNEKVAAICQNIKDDGRKATGEDGIVIFTIAFDLNDGSSVKKLMEQCASY 556

Query: 369 ---DPSK--YYEINSDENVMPIAKSLARNV 393
              DP+K  YY+  S  ++M    S+   V
Sbjct: 557 GITDPTKKLYYDAKSSSDLMAAFDSITEQV 586


>gi|315122199|ref|YP_004062688.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495601|gb|ADR52200.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 463

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 1  MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQV 44
          M  NK+      RLKKC  G F VI+A+LL     ++ +++D V
Sbjct: 1  MVFNKSLFFNFKRLKKCYNGSFFVISALLLPVIFMVIGLLIDLV 44


>gi|110634434|ref|YP_674642.1| hypothetical protein Meso_2084 [Mesorhizobium sp. BNC1]
 gi|110285418|gb|ABG63477.1| conserved hypothetical protein [Chelativorans sp. BNC1]
          Length = 549

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 5/141 (3%)

Query: 257 KDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGASQNKYMLMLAIGNQLS 316
           ++P+  T    P S ++ +  + ++   +  +  N NH      S   Y++   +  + S
Sbjct: 406 REPF--TEGKEPASDVEKIMIVLTDGANNMGLSNNRNHALGSSYSSFGYLVEDRLTRERS 463

Query: 317 RSSVEKEKIEKVLQDCHYMHKRHRTGR-DAITIFSVGFS-PDQDTRYTLRQCASDPSKYY 374
           +  V +E   + L  C    + +   + D +TI+++    PD  T   L++CA+ P  Y+
Sbjct: 464 QRRVTEEMNRRTLAACENAKREYTPSKEDDVTIYTIRLEEPDVATGTLLQECATGPGYYF 523

Query: 375 EINSDENVMPIAKSLARNVIT 395
           +  S   +  I K + R+ IT
Sbjct: 524 DSPSRTQLNAIFKEI-RDGIT 543


>gi|126731764|ref|ZP_01747569.1| hypothetical protein SSE37_00930 [Sagittula stellata E-37]
 gi|126707930|gb|EBA06991.1| hypothetical protein SSE37_00930 [Sagittula stellata E-37]
          Length = 648

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 15/71 (21%)

Query: 19  RGVFLVITAILLSSFV-------------AIVDVVVDQVTVMQKTAWLQEVLDHVIYRTS 65
           RGV+L++T++L+  F+             +IVD+V+  +TV+    W+ + + + I+R S
Sbjct: 50  RGVYLMLTSVLV--FLLYPAHGRSPTHRPSIVDLVLIGLTVLSIGYWIDQYVSYAIFRVS 107

Query: 66  PKNLYDLREAG 76
             N YDL   G
Sbjct: 108 SPNQYDLVMGG 118


>gi|291225015|ref|XP_002732495.1| PREDICTED: UDP-glucose pyrophosphorylase 2-like [Saccoglossus
           kowalevskii]
          Length = 517

 Score = 36.6 bits (83), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 11/82 (13%)

Query: 325 IEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCAS--------DPSKYYEI 376
           ++  +Q   +++K++  G D   +    F+ D+DT   LR+  S        + SKY  I
Sbjct: 150 LDLAVQQIEHLNKKY--GSDVPLVLMNSFNTDEDTNKVLRKYDSCQVQISTFNQSKYPRI 207

Query: 377 NSDENVMPIAKSLARNVITNWF 398
           N D +++PIAKS++ + +  W+
Sbjct: 208 NKD-SLLPIAKSVSSDDLEAWY 228


Searching..................................................done


Results from round 2





CONVERGED!
>gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040684|gb|ACT57480.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 411

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/411 (100%), Positives = 411/411 (100%)

Query: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
           MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV
Sbjct: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60

Query: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
           IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL
Sbjct: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120

Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
           PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180

Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
           SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240

Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
           TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300

Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
           SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360

Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDSWRR 411
           YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDSWRR
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDSWRR 411


>gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040591|gb|ACT57387.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040606|gb|ACT57402.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score =  711 bits (1834), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/408 (99%), Positives = 407/408 (99%)

Query: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
           MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV
Sbjct: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60

Query: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
           IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSN GSIESIVKDAVILTKNVNSL
Sbjct: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120

Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
           PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180

Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
           SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG
Sbjct: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240

Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
           TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300

Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
           SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR
Sbjct: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360

Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
           YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408


>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039812|gb|ACT56608.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/408 (91%), Positives = 380/408 (93%)

Query: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
           MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTA LQEVLDHV
Sbjct: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTALLQEVLDHV 60

Query: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
           IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSN GSIESIVKDAVILTKNVNSL
Sbjct: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNIGSIESIVKDAVILTKNVNSL 120

Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
           PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA
Sbjct: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180

Query: 181 SRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVG 240
           SRGKVADS+VH PKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHY SI YWA  
Sbjct: 181 SRGKVADSQVHRPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNFCMAPYHYKSIFYWAFE 240

Query: 241 TLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300
              Y  DN       ++D Y  TWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA
Sbjct: 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPHGA 300

Query: 301 SQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTR 360
           S +KYMLM AIGNQLSRSSV KE I+++LQDC+YMHK HRTGR AITIFSVGFSPDQDTR
Sbjct: 301 SHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTR 360

Query: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408
           YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS
Sbjct: 361 YTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVVDS 408


>gi|315122409|ref|YP_004062898.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495811|gb|ADR52410.1| hypothetical protein CKC_03305 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 411

 Score =  571 bits (1472), Expect = e-161,   Method: Composition-based stats.
 Identities = 140/416 (33%), Positives = 221/416 (53%), Gaps = 21/416 (5%)

Query: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
           MF  +NFL    RL  CT G FL+++A+LLSSF+ I+D++ D   +++    LQ  +D+ 
Sbjct: 1   MFYYRNFLSVFSRLNHCTNGSFLIVSAVLLSSFLTIMDIMRDYTDMIRVRNMLQSSIDYA 60

Query: 61  IYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSL 120
           ++  +P  L       R+  I+ +I   L++     L     I+ IV  + +     +  
Sbjct: 61  LH-NNPNELSVGTIKQREMLIKKRIGYFLDSNYKGTLLTEEQIKLIVNQSTVSITERSFY 119

Query: 121 PLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYWLA 180
           P QF ++I L   +QL+  +L M    K   +IS+RK  +YK+N+ LM++PF W G W+ 
Sbjct: 120 PQQFHINIELHKNIQLKSLILHMAMNPKKDFNISQRKSSLYKKNVALMVVPFTWTGEWIP 179

Query: 181 SR---GKVADSKVHPPKYLEYSHYYQ-QYLN-RNTLVKNFLSQIPYKNFCMAPYHYSSIL 235
                 +   S+   P  L+  H+ + +Y N RN   K FLS+I   N C+APYHYS+I+
Sbjct: 180 PSLFTTQFTVSQDLLPSDLKTEHFKKTEYFNKRNQFFKMFLSKIKENNLCIAPYHYSAIV 239

Query: 236 YWAVGTLTYSVDNKTT----TREYYKDPYYATWDHFPYSFIKNVF---DMTSNQFGDGQV 288
           YW+ G  +Y +   TT     R+ Y   Y   WD  P ++I ++F   ++ SN+      
Sbjct: 240 YWSEGIFSYKLPFSTTFLYSFRDIYVKQYSTIWDMKPSNYILDLFAGAELHSNR------ 293

Query: 289 LTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRH-RTGRDAIT 347
           LT  + CF  G  Q K+ML++A GNQ+S      E   K+   C  M K   +  ++ IT
Sbjct: 294 LTPADPCFRRGVIQKKFMLIIAAGNQISDRKNSAEYF-KMKHGCTLMGKNMGKNPQEEIT 352

Query: 348 IFSVGFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTI 403
           ++S+G SPD DT+  L QC   P +YYEI S +++ P+   L RN+ + W   F+I
Sbjct: 353 VYSLGISPDPDTKRDLIQCTRHPDRYYEIQSYKDIAPVIDRLERNISSVWNDGFSI 408


>gi|315122199|ref|YP_004062688.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495601|gb|ADR52200.1| hypothetical protein CKC_02245 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 463

 Score = 43.2 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 11/144 (7%)

Query: 1   MFQNKNFLLGVLRLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHV 60
           M  NK+      RLKKC  G F VI+A+LL     ++ +++D V        L + ++  
Sbjct: 1   MVFNKSLFFNFKRLKKCYNGSFFVISALLLPVIFMVIGLLIDLVRWGYYHNSLVQAVNTA 60

Query: 61  IYRTSPKNLYDLREAGRDNFIRHQIE------KALNTYNSRDLSNTGSIESIVKDAVILT 114
               S + L  + +  ++  +   +         LN       +N G ++S     +I  
Sbjct: 61  ALSASVQLLNSVEDKSKEKALSSVLGENNIKQYLLNNLKISLYNNFGEMDS---QRIIQH 117

Query: 115 KNVNSLPLQFT--VDIALSTTVQL 136
             VN    + T  +++     + L
Sbjct: 118 TKVNIYNRKGTHIINVYSHYNLPL 141


>gi|220906794|ref|YP_002482105.1| signal transduction histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863405|gb|ACL43744.1| signal transduction histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1560

 Score = 40.1 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 30/174 (17%)

Query: 103  IESIVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKG----KVDISRRKK 158
            ++ +     I     N       ++ +L   VQ R + LQM   +      + D+S   +
Sbjct: 975  LQQLANQVGIAIYQANLYQQVQQLNQSLEEQVQERTAQLQMALSATSMGTWEWDLSNNVE 1034

Query: 159  VMYKQNIGLMIMP-------FAWDGYWL--ASRGKVADSKVHPPKYLEYSHYYQQYLNRN 209
               +Q+ GLM          F  DG  +       +  S VH P  LEY    Q    R 
Sbjct: 1035 RWSEQSYGLMGYQVDQQGNIFDLDGQAVNTPPSHNLFLSHVH-PDDLEYLERVQTQSLRE 1093

Query: 210  TLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTREYYKDPYYAT 263
                             AP+ Y     W+ G++ +         + +  P  A 
Sbjct: 1094 Q----------------APFEYEFRFVWSDGSIHWCYTRGAYIFDAHGQPLRAV 1131


>gi|316964581|gb|EFV49619.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 271

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 31  SSFVAIVDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALN 90
           S+F+AI  +   +   ++  +     L  V +     + YDL        +R Q+EK + 
Sbjct: 48  SNFMAIFVITRQEGDKLEVLS-TSSSLKPVSFPNFYVDNYDLTT------LRSQLEKIIL 100

Query: 91  TYNSRDLSNTGSIESIVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGK 150
             NS+   +   I+ IVKDA+    +   L   FT D + +    L   ++Q+  QSK  
Sbjct: 101 HSNSQKSHSEEEIKKIVKDAM---HHSTLLKQGFTPDASNTDNSWLETVIVQISDQSKKH 157

Query: 151 VDI 153
           V +
Sbjct: 158 VGL 160


>gi|226499930|ref|NP_001141473.1| hypothetical protein LOC100273583 [Zea mays]
 gi|194704720|gb|ACF86444.1| unknown [Zea mays]
          Length = 504

 Score = 38.5 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 232 SSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTN 291
           + + + +   L   +    T  E     Y  ++ +F  +  ++ F       G  +  T 
Sbjct: 208 AQLAFVSDEVLPPKLSYNYTFIETTYTLYTNSFLNFGQNAAQDSFHEMLRSRGSSENATL 267

Query: 292 TNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIE 326
            + C P G S+N+ M++   G   SRS++E + ++
Sbjct: 268 ADPCAPRGYSRNEEMMLRMSG--ASRSTLENQYVD 300


>gi|194701456|gb|ACF84812.1| unknown [Zea mays]
          Length = 374

 Score = 38.1 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 232 SSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTN 291
           + + + +   L   +    T  E     Y  ++ +F  +  ++ F       G  +  T 
Sbjct: 78  AQLAFVSDEVLPPKLSYNYTFIETTYTLYTNSFLNFGQNAAQDSFHEMLRSRGSSENATL 137

Query: 292 TNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIE 326
            + C P G S+N+ M++   G   SRS++E + ++
Sbjct: 138 ADPCAPRGYSRNEEMMLRMSG--ASRSTLENQYVD 170


>gi|326679371|ref|XP_690846.5| PREDICTED: interferon-induced very large GTPase 1 [Danio rerio]
          Length = 1700

 Score = 37.0 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 69/169 (40%), Gaps = 23/169 (13%)

Query: 46   VMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDL--SNTGSI 103
            +++  A  Q+    +IY T+P+  +        NFIR ++ + +     +++      S 
Sbjct: 1403 ILKTLAEKQDFRAFIIYITNPREHF-------KNFIRDEVNQFVTKTFEKNVRPKMENST 1455

Query: 104  ESIVKDAVILTKNVNSLPLQFTVDIAL---STTVQLRGSLLQMFSQS------KGKVDIS 154
            + + +      +  +    +   ++ L     T QL G L+  FS+S      +G  ++S
Sbjct: 1456 KVLEQQITNAARESSKYVKETDGNVGLWLRHFTQQLSGVLI--FSESDLIGVNQGDANVS 1513

Query: 155  RRKKVMYKQNIGLMIMPFAWDGYWLASRGKVADSKVHPPKYLEYSHYYQ 203
              + V+ K+   L  + F     +   + +V   + H P  +   H+ Q
Sbjct: 1514 FLEDVIKKE---LPSIKFDIFSKFRPEKFQVKLEQAHRPDEILIDHFCQ 1559


>gi|222149754|ref|YP_002550711.1| hypothetical protein Avi_3756 [Agrobacterium vitis S4]
 gi|221736736|gb|ACM37699.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 437

 Score = 37.0 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 2/126 (1%)

Query: 13  RLKKCTRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDL 72
           RL + + G F ++TA+LL   + +  + +D   ++Q  + LQ  +D      +      +
Sbjct: 41  RLLRHSGGNFGMMTAVLLPVSIGVAGLAMDATEMVQSRSALQSSVDAAALAAASAMSNGM 100

Query: 73  REAGRDNFIRHQIEKALNTYNSRD--LSNTGSIESIVKDAVILTKNVNSLPLQFTVDIAL 130
            EA      +  +   L    +RD   S+   I     D  + T  VNS    + V++  
Sbjct: 101 SEADAIALAKSFLSSQLANTMARDENTSSVDQITQAEPDISVKTTQVNSSSTSYDVELTG 160

Query: 131 STTVQL 136
           S T+ +
Sbjct: 161 SYTITM 166


>gi|150866507|ref|XP_001386136.2| putative transcription factor [Scheffersomyces stipitis CBS 6054]
 gi|149387763|gb|ABN68107.2| putative transcription factor [Scheffersomyces stipitis CBS 6054]
          Length = 649

 Score = 37.0 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 104/293 (35%), Gaps = 44/293 (15%)

Query: 57  LDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKN 116
           L+ +   +    +   +E   DN IR +I K +N  ++  L N G          +   N
Sbjct: 290 LEFINEFSHKTKMNISQEVNLDNLIRERIYKFININSNYWLINLG----------LSNNN 339

Query: 117 VNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQNIGLMIMPFAWDG 176
            N     + ++ + +  +  + S    +  S  K+ + + K     +N+ ++I       
Sbjct: 340 YNGFTQDYIINKSSNIDILNKTSEGDHYINSLLKISMIQSK---LNENMNILI------- 389

Query: 177 YWLASRGKVADSKVHPPKYLEYSHYYQQYLNRNTLVKNFLSQI---PYKNFCMAPYHYSS 233
                 G  ++S    P  L  S       N   ++ + L++I      +  +      S
Sbjct: 390 ------GNNSESVSLLPNQLNTSKLIN--FNMFEIIIDDLNKILVRDDNSLVLNNLIKIS 441

Query: 234 ILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTN 293
           I +  +    YS+     T   YK        H+    +K+ F + S+QF D  +  N  
Sbjct: 442 IEFSKLQLFVYSLSKSDITILEYK--------HYITKVLKSCFIIFSSQFQDNSLNFNQL 493

Query: 294 HCFPHGASQNKYMLML-----AIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRT 341
                   +   ++ML      I N +S   + KEK  ++  +     K +  
Sbjct: 494 PIHYKFPIELAMLIMLRVFKSPIMNSISDYKLVKEKFNQMYDNIIMGGKNNED 546


>gi|193700169|ref|XP_001949866.1| PREDICTED: protein singed-like [Acyrthosiphon pisum]
          Length = 520

 Score = 36.6 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 295 CFPHGASQNKYMLM-LAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGF 353
           C    A  ++  L+ LA   Q++  SV +++   + ++   +H          T+F++  
Sbjct: 142 CTAKAAGSSELWLVHLAARPQVNLRSVGRKRFAHLSENLDEIHVDANIPWGEDTLFTLEL 201

Query: 354 SPDQDTRYTLRQC 366
            PD D +Y +  C
Sbjct: 202 RPDDDFKYAIHTC 214


>gi|329766483|ref|ZP_08258027.1| thiamine-monophosphate kinase [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137082|gb|EGG41374.1| thiamine-monophosphate kinase [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 317

 Score = 36.2 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 20/161 (12%)

Query: 62  YRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRD--LSNTGSIESIVKDAVILTKNVNS 119
           Y  S   +   +    + F++  I+  +N     D  + N   I S +  +  L+  +N 
Sbjct: 158 YTASGLKILLGKNKKSNQFVKKVIKSFVNPRPKLDFGVRNRRYISSSMDSSDGLSATLNE 217

Query: 120 LPLQ----FTVD-----------IALSTTVQLRGSLLQMFSQSKGKVDISRRKKVMYKQN 164
           +  Q    F ++           + L+  + L   +     + +    +S++ K + K+N
Sbjct: 218 MANQSKCRFVINNIPTGKDMIEFVKLNK-MNLNELVFHGGEEYEFVFTVSKKHKAIIKKN 276

Query: 165 IGLMIMPFAWDGYWLASRGKV--ADSKVHPPKYLEYSHYYQ 203
              +  P    GY    RG     D +  P K L + H+ +
Sbjct: 277 ALQLNTPIIEIGYVTKGRGVFLETDERDVPLKDLGWKHFKK 317


>gi|224058383|ref|XP_002195268.1| PREDICTED: Janus kinase 1 (a protein tyrosine kinase) [Taeniopygia
           guttata]
          Length = 1190

 Score = 36.2 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 192 PPKYLEYSHYYQQYLNRNTLVKNFLSQIPYKNF---CMAPYHYSSILYWAVGTLTYSVDN 248
            PK + Y HY  + LNR    +NFL++I   N     +  ++  +I   +V      V  
Sbjct: 249 LPKDISYKHYIPETLNRTIRQRNFLTRIRINNVFKHFLKEFNNKTICNNSVSPRDLKVKY 308

Query: 249 KTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDG 286
            +T  E     Y A  + F  SF+    +   N+F  G
Sbjct: 309 LSTM-EILTKYYGA--EIFETSFLLISAENEVNKFNCG 343


>gi|197105075|ref|YP_002130452.1| hypothetical protein PHZ_c1612 [Phenylobacterium zucineum HLK1]
 gi|196478495|gb|ACG78023.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 521

 Score = 36.2 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 35/85 (41%)

Query: 311 IGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDP 370
            G  ++ SS ++E+   +      +    +     I I+++       +   L+ CAS  
Sbjct: 432 AGRPITESSSQRERTAALDDRLLKLCANMKAPAKDIEIYAIRVEVSSGSSSVLQTCASSA 491

Query: 371 SKYYEINSDENVMPIAKSLARNVIT 395
             YY++ +  ++    +S+A  +  
Sbjct: 492 DHYYDVQNAADMTMAFQSIAGQIAA 516


>gi|15891094|ref|NP_356766.1| hypothetical protein Atu3868 [Agrobacterium tumefaciens str. C58]
 gi|15159433|gb|AAK89551.1| hypothetical protein Atu3868 [Agrobacterium tumefaciens str. C58]
          Length = 412

 Score = 36.2 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 18  TRGVFLVITAILLSSFVAIVDVVVDQVTVMQKTAWLQEV------LDHVIYRTSPKNLYD 71
           T G F ++TAILL   + +    ++   VMQ  A +Q              R     L D
Sbjct: 17  TSGNFGMMTAILLPVLLGVAGAGMELANVMQVKADMQNTADSAALAAATEARLREGKLSD 76

Query: 72  LREAG-RDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDAVILTKNVNSLPLQFTVDIAL 130
            +      NFI  Q+EK        +L+    IE        +T   N+    + V+  +
Sbjct: 77  EQIKEIAKNFIAAQMEK--------NLTAEEKIELEKNSPTRVTTTENARGKTYAVETTI 128

Query: 131 STTVQLRGSL 140
              +QL   L
Sbjct: 129 KHQIQLNPML 138


>gi|328713142|ref|XP_001951374.2| PREDICTED: nipped-B-like protein [Acyrthosiphon pisum]
          Length = 1920

 Score = 36.2 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 66/191 (34%), Gaps = 11/191 (5%)

Query: 213  KNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFI 272
            + FLSQ+      +   H  +++   +  L   V+N T   +  +D +        Y ++
Sbjct: 1247 EIFLSQLEEDAVKLIMKHDQTVILSCISCLGSVVNNVTRNFKLIRDCFGIY-----YKYL 1301

Query: 273  KNVFDMTSNQFGDGQVLTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDC 332
             N   +  ++  + Q L      F         ML        +   V  +   + ++D 
Sbjct: 1302 SNFQKLHQDRQTNPQGLIPLRPIFRRSIYIIGLMLRFF---DFTDKDVYGDAYPENIRDL 1358

Query: 333  HY--MHKRHRTGRDAITIFSV-GFSPDQDTRYTLRQCASDPSKYYEINSDENVMPIAKSL 389
             Y  M     T  D   +F++          Y    C    + Y +I S+ +V  I KS 
Sbjct: 1359 VYDIMSYFMHTNEDDTKLFALKAIGSICIRHYDFMLCQDLMNTYLDILSNNSVPNIMKSQ 1418

Query: 390  ARNVITNWFSQ 400
              N I  +  +
Sbjct: 1419 ILNNIEIYLEE 1429


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.132    0.371 

Lambda     K      H
   0.267   0.0403    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,033,728,837
Number of Sequences: 14124377
Number of extensions: 266192572
Number of successful extensions: 768563
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 768533
Number of HSP's gapped (non-prelim): 47
length of query: 411
length of database: 4,842,793,630
effective HSP length: 141
effective length of query: 270
effective length of database: 2,851,256,473
effective search space: 769839247710
effective search space used: 769839247710
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 82 (36.2 bits)