RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781007|ref|YP_003065420.1| hypothetical protein
CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62]
(411 letters)
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus,
CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A
{Streptococcus pneumoniae}
(A:221-279,A:318-447,A:506-585)
Length = 269
Score = 36.8 bits (84), Expect = 0.005
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 341 TGRDAITIFSVGFSPDQDT-------RYTLRQCASDPSKYYEINSDENVMPIAKSLARNV 393
D +F+VG + D ++ +S P Y + + I + L R
Sbjct: 211 IAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYTNV---TDTTKILEQLNRYF 267
>3hrz_D Complement factor B; serine protease, glycosilated,
multi-domain, complement system, convertase, complement
alternate pathway, complement pathway; HET: NAG P6G;
2.20A {Homo sapiens} PDB: 3hs0_D* 2ok5_A* (D:199-457)
Length = 259
Score = 31.4 bits (70), Expect = 0.19
Identities = 15/168 (8%), Positives = 43/168 (25%), Gaps = 10/168 (5%)
Query: 231 YSSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLT 290
Y++ V N + + Y + K +
Sbjct: 91 YATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPD--- 147
Query: 291 NTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFS 350
+ + +++L + I+++ + R D + ++
Sbjct: 148 DVPPEGWNRTRH---VIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYV 204
Query: 351 VGFSPDQDTRYTLRQCASDP---SKYYEINSDENVMPIAKSLARNVIT 395
G P + + AS +++ EN+ + + +
Sbjct: 205 FGVGPLVNQV-NINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQS 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport
system kinase, structural genomics, joint center for
structural genomics, JCSG; 1.95A {Silicibacter SP}
(A:1-61,A:124-208)
Length = 146
Score = 28.6 bits (64), Expect = 1.5
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 53 LQEVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKALNTYNSRDLSNTGSIESIVKDA-V 111
L + D I P + R R + A+ DL+N +IE+ A +
Sbjct: 82 LTAIWDVSIRLEVPXADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADL 141
Query: 112 ILTK 115
+
Sbjct: 142 TWPQ 145
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative
conformations, modulation of activity, glycoprotein,
glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A
{Penicillium citrinum} (A:267-366)
Length = 100
Score = 28.6 bits (64), Expect = 1.6
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 308 MLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCA 367
+G + + +++ C + T I S G+ P + + ++
Sbjct: 36 SFLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTK---IGPDSWGWDPKKVP--SDQKEF 90
Query: 368 SDPSKYYEINS 378
+ + +Y I+S
Sbjct: 91 YEKAGFY-ISS 100
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot,
structural genomics, NPPSFA; HET: SAM MTA; 2.48A
{Pyrococcus horikoshii} (A:)
Length = 201
Score = 27.8 bits (62), Expect = 2.6
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 346 ITIFSVGFSPDQDTRYT----LRQCASDPSK-YYEINSDENVMPIAKSLARNVITNWFSQ 400
I + +G P++D R T L A DE V +S+ +V+ W
Sbjct: 2 IVVLRLGHRPERDKRVTTHVALTARAFGADGIIIASEEDEKVK---ESV-EDVVKRWGGP 57
Query: 401 FTITVVDSWRR 411
F I +WR+
Sbjct: 58 FFIEFNRNWRK 68
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
(A:)
Length = 193
Score = 27.9 bits (61), Expect = 2.7
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 35 AIVDVVVDQVTVMQKTAWLQEVLDHVIYRTSPK-------NLYDLREAGRDNFIRHQIEK 87
+VD VD + +L ++L N +L A + I+ +E
Sbjct: 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183
Query: 88 ALNT 91
+
Sbjct: 184 EIQK 187
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum} (A:202-299)
Length = 98
Score = 27.1 bits (60), Expect = 3.7
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 303 NKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRT 341
+ Y + Q+ + K+ VL+ KR
Sbjct: 37 HNYKNWCTLNKQVPVNFPFKKYCLDVLEHLDMCEKRSIN 75
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase,
ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
(A:102-199)
Length = 98
Score = 27.0 bits (60), Expect = 4.7
Identities = 4/44 (9%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 166 GLMIMPFAWDGYW-LASRGKVADSKVHPPKYLEYSHYYQQYLNR 208
G ++ + S+G + + + + + + +R
Sbjct: 2 GSLVSTYLDGDEILFKSKGSIKSEQALXANGILXNINHHRLRDR 45
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1
C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A
{Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A*
1zrt_C* (A:123-226)
Length = 104
Score = 26.7 bits (60), Expect = 5.3
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 210 TLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTR 253
T++ IP SI W +G +VDN T R
Sbjct: 38 TVITGLFGAIPGIG--------HSIQTWLLG--GPAVDNATLNR 71
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron
transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} (C:108-213)
Length = 106
Score = 26.7 bits (60), Expect = 6.1
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 10/44 (22%)
Query: 210 TLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTR 253
T++ N S IP+ + I+ W G +SV N T R
Sbjct: 38 TVITNLFSAIPFVG--------NDIVSWLWGG--FSVSNPTIQR 71
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR
repeat, PUR domain, whirly fold, DNA binding protein,
RNA binding protein; 2.10A {Drosophila melanogaster}
(A:)
Length = 146
Score = 26.4 bits (58), Expect = 6.4
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 22/99 (22%)
Query: 3 QNKNFLLGVLRLKKCTRGVFLVIT-----------AILLSSFVAIVDVVVDQVTVMQKTA 51
Q+K F L +K+ RG F+ + + LS+ D +
Sbjct: 13 QSKRFYL---DVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLG 69
Query: 52 --------WLQEVLDHVIYRTSPKNLYDLREAGRDNFIR 82
++ ++ + + DL+E R F+R
Sbjct: 70 PPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLR 108
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.134 0.404
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,127,822
Number of extensions: 139314
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 21
Length of query: 411
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 320
Effective length of database: 1,879,794
Effective search space: 601534080
Effective search space used: 601534080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)