RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62] (411 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.9 bits (106), Expect = 3e-05 Identities = 78/520 (15%), Positives = 135/520 (25%), Gaps = 210/520 (40%) Query: 7 FLLGVL-RLKKCTRGVFLVITAILL----SSFVAIVDV--VV------DQVTVMQKTAWL 53 FL V ++ G F + + L + ++ D+ + + T+++ + Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123 Query: 54 Q------EVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKAL-------NTYNS--RDLS 98 + + + S L R G N Q+ A+ + Y RDL Sbjct: 124 KNYITARIMAKRPFDKKSNSAL--FRAVGEGNA---QL-VAIFGGQGNTDDYFEELRDLY 177 Query: 99 NTGSIESIVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKK 158 T +V D L I S L + +K Sbjct: 178 QT--YHVLVGD------------L-----IKFS------AETLSELIR-----TTLDAEK 207 Query: 159 VMYKQNIGLMIMPFAWDGYWLASRGKVADSKVHPPKYL-------------EYSHYYQ-- 203 ++ Q GL I+ WL + D YL + +HY Sbjct: 208 -VFTQ--GLNILE------WLENPSNTPDKD-----YLLSIPISCPLIGVIQLAHYVVTA 253 Query: 204 QYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTREYYKDPYYAT 263 + L S A H ++ D + Sbjct: 254 KLLGFT--PGELRS-----YLKGATGHSQGLV---TAVAIAETD---------------S 288 Query: 264 WDHFPYSFIKNVFDMTSNQFGDGQVL----TNTNHCFPHGASQNKYML------------ 307 W+ F S K + VL +P+ + +L Sbjct: 289 WESFFVSVRKAI-----------TVLFFIGVRCYEAYPNTSLPPS-ILEDSLENNEGVPS 336 Query: 308 -MLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRH-----RTGRDAITI----FS-VGFS-- 354 ML+I N L++ V+ + K + H + G + + S G + Sbjct: 337 PMLSISN-LTQEQVQDY-VNKT--NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392 Query: 355 ---------PDQDTR--YTLRQCA--------SDP--SKYYE-----INSD---ENVMPI 385 DQ +R ++ R+ + P S IN D NV Sbjct: 393 LRKAKAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451 Query: 386 AKSLA------------R----NVITNWFSQFTITVVDSW 409 AK + R ++ V W Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-W 490 Score = 39.9 bits (93), Expect = 0.001 Identities = 63/408 (15%), Positives = 94/408 (23%), Gaps = 206/408 (50%) Query: 89 LNTYNSRDLS-NTGSIE-SIVKDAVILTKNVNSLP--LQFTVDIALSTTVQLRGSLLQMF 144 ++ Y++R L+ + GS+E + +P F QL+ F Sbjct: 1 MDAYSTRPLTLSHGSLEHVL------------LVPTASFFIAS-------QLQEQ----F 37 Query: 145 SQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYW----------LASR--GKVADSKVHP 192 ++ +P +G+ L + G V+ V P Sbjct: 38 NKI----------------------LPEPTEGFAADDEPTTPAELVGKFLGYVSS-LVEP 74 Query: 193 PKYLEYS--------HYYQQYLNRN---TLVKNFLSQIP------------YKNFCMA-- 227 K ++ + YL N L L + Y + Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134 Query: 228 ---PYHYSSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFG 284 +S L+ AVG + A FG Sbjct: 135 RPFDKKSNSALFRAVG------EGNAQL--------VAI-------------------FG 161 Query: 285 DGQVLTNTNHCF-----------PHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCH 333 GQ NT+ F L+ LS EKV Sbjct: 162 -GQ--GNTDDYFEELRDLYQTYHVLVGD-----LIKFSAETLSELIRTTLDAEKVFT--Q 211 Query: 334 YM------HKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDP-SKYYEINSDENVMPI- 385 + T PD+D Y S P S P+ Sbjct: 212 GLNILEWLENPSNT-------------PDKD--YL----LSIPIS-----------CPLI 241 Query: 386 -AKSLARNVITNWFSQFT-----------------------ITVVDSW 409 LA V+T FT I DSW Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289 Score = 39.2 bits (91), Expect = 0.002 Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 67/148 (45%) Query: 5 KNF--------LLGV---LRLKKCTRGV-----------------FLVITAILLSSFVAI 36 KN L G+ LR K G+ FL + + S + Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434 Query: 37 VDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNL----YDLREAGRDNFIRHQIEKALNTY 92 D + ++++ + + + K++ YD T+ Sbjct: 435 A---SDLI--------NKDLVKNNV-SFNAKDIQIPVYD-------------------TF 463 Query: 93 NSRDLSNTGSIESIVKDAV--ILTKNVN 118 + DL SI + V I+ V Sbjct: 464 DGSDLRVLS--GSISERIVDCIIRLPVK 489 Score = 27.6 bits (61), Expect = 5.3 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 16/63 (25%) Query: 40 VVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRD------NFIRHQ------IEK 87 VV++V ++T WL E++++ + DLR D NFI+ Q ++K Sbjct: 1829 VVERVG--KRTGWLVEIVNYNVENQQYVAAGDLR--ALDTVTNVLNFIKLQKIDIIELQK 1884 Query: 88 ALN 90 +L+ Sbjct: 1885 SLS 1887 >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 Length = 198 Score = 29.8 bits (66), Expect = 1.1 Identities = 15/162 (9%), Positives = 44/162 (27%), Gaps = 19/162 (11%) Query: 239 VGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPH 298 + +S + + + + + + + +V + + + + F Sbjct: 48 FSLMQFSNKFQ---THFTFEEFRRSSNPLS--LLASVHQLQGFTYTATAIQNVVHRLFHA 102 Query: 299 GASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQD 358 + + I + + + V+ I +++G Sbjct: 103 SYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAG---------IIRYAIGVGLAFQ 153 Query: 359 TRY---TLRQCASDPS--KYYEINSDENVMPIAKSLARNVIT 395 R L AS PS +++ + + I L + Sbjct: 154 NRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 195 >3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390 Score = 29.3 bits (65), Expect = 1.6 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 10/124 (8%) Query: 212 VKNFLSQIPYKNFCMAPYHYSSILYWAVGTLT--YSVDNKTTTREYYKDPYYATWDHFPY 269 L +P + +I+Y+ + L YY++ + Sbjct: 13 FNRCLIGLPST-AQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENN 71 Query: 270 SFIKNVFDMTSNQFGDGQVLTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVL 329 I +++ F N + P+ +S + L I + + ++KI L Sbjct: 72 QIISFR---STHYFQKT----NQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFL 124 Query: 330 QDCH 333 C Sbjct: 125 CKCQ 128 >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C Length = 202 Score = 28.7 bits (63), Expect = 2.5 Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 331 DCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDPS--KYYEINSDENVMPIAKS 388 + + + + + + VG P + + +R K + ++S + + Sbjct: 134 NFVRYVQGLK--KKKVIVIPVGIGPHANLK-QIRLIEKQAPENKAFVLSSVDELEQQRDE 190 Query: 389 LARNV 393 + + Sbjct: 191 IVSYL 195 >1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Score = 27.1 bits (59), Expect = 7.6 Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 360 RYTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVV 406 Y + +DP+++ +N D ++ +L R + +T+ ++ Sbjct: 523 SYFI---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIML 566 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.134 0.404 Gapped Lambda K H 0.267 0.0558 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,532,244 Number of extensions: 158915 Number of successful extensions: 434 Number of sequences better than 10.0: 1 Number of HSP's gapped: 431 Number of HSP's successfully gapped: 19 Length of query: 411 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 316 Effective length of database: 3,390,050 Effective search space: 1071255800 Effective search space used: 1071255800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.5 bits)