RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781007|ref|YP_003065420.1| hypothetical protein
CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62]
         (411 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 78/520 (15%), Positives = 135/520 (25%), Gaps = 210/520 (40%)

Query: 7   FLLGVL-RLKKCTRGVFLVITAILL----SSFVAIVDV--VV------DQVTVMQKTAWL 53
           FL  V   ++    G F  +  + L    + ++   D+  +       +  T+++    +
Sbjct: 64  FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123

Query: 54  Q------EVLDHVIYRTSPKNLYDLREAGRDNFIRHQIEKAL-------NTYNS--RDLS 98
           +       +      + S   L   R  G  N    Q+  A+       + Y    RDL 
Sbjct: 124 KNYITARIMAKRPFDKKSNSAL--FRAVGEGNA---QL-VAIFGGQGNTDDYFEELRDLY 177

Query: 99  NTGSIESIVKDAVILTKNVNSLPLQFTVDIALSTTVQLRGSLLQMFSQSKGKVDISRRKK 158
            T     +V D            L     I  S         L    +          +K
Sbjct: 178 QT--YHVLVGD------------L-----IKFS------AETLSELIR-----TTLDAEK 207

Query: 159 VMYKQNIGLMIMPFAWDGYWLASRGKVADSKVHPPKYL-------------EYSHYYQ-- 203
            ++ Q  GL I+       WL +     D       YL             + +HY    
Sbjct: 208 -VFTQ--GLNILE------WLENPSNTPDKD-----YLLSIPISCPLIGVIQLAHYVVTA 253

Query: 204 QYLNRNTLVKNFLSQIPYKNFCMAPYHYSSILYWAVGTLTYSVDNKTTTREYYKDPYYAT 263
           + L          S         A  H   ++           D               +
Sbjct: 254 KLLGFT--PGELRS-----YLKGATGHSQGLV---TAVAIAETD---------------S 288

Query: 264 WDHFPYSFIKNVFDMTSNQFGDGQVL----TNTNHCFPHGASQNKYML------------ 307
           W+ F  S  K +            VL          +P+ +     +L            
Sbjct: 289 WESFFVSVRKAI-----------TVLFFIGVRCYEAYPNTSLPPS-ILEDSLENNEGVPS 336

Query: 308 -MLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRH-----RTGRDAITI----FS-VGFS-- 354
            ML+I N L++  V+   + K   + H    +        G   + +     S  G +  
Sbjct: 337 PMLSISN-LTQEQVQDY-VNKT--NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392

Query: 355 ---------PDQDTR--YTLRQCA--------SDP--SKYYE-----INSD---ENVMPI 385
                     DQ +R  ++ R+          + P  S         IN D    NV   
Sbjct: 393 LRKAKAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451

Query: 386 AKSLA------------R----NVITNWFSQFTITVVDSW 409
           AK +             R    ++            V  W
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-W 490



 Score = 39.9 bits (93), Expect = 0.001
 Identities = 63/408 (15%), Positives = 94/408 (23%), Gaps = 206/408 (50%)

Query: 89  LNTYNSRDLS-NTGSIE-SIVKDAVILTKNVNSLP--LQFTVDIALSTTVQLRGSLLQMF 144
           ++ Y++R L+ + GS+E  +             +P    F          QL+      F
Sbjct: 1   MDAYSTRPLTLSHGSLEHVL------------LVPTASFFIAS-------QLQEQ----F 37

Query: 145 SQSKGKVDISRRKKVMYKQNIGLMIMPFAWDGYW----------LASR--GKVADSKVHP 192
           ++                       +P   +G+           L  +  G V+   V P
Sbjct: 38  NKI----------------------LPEPTEGFAADDEPTTPAELVGKFLGYVSS-LVEP 74

Query: 193 PKYLEYS--------HYYQQYLNRN---TLVKNFLSQIP------------YKNFCMA-- 227
            K  ++          +   YL  N    L    L +              Y    +   
Sbjct: 75  SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134

Query: 228 ---PYHYSSILYWAVGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFG 284
                  +S L+ AVG      +              A                    FG
Sbjct: 135 RPFDKKSNSALFRAVG------EGNAQL--------VAI-------------------FG 161

Query: 285 DGQVLTNTNHCF-----------PHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCH 333
            GQ   NT+  F                     L+      LS         EKV     
Sbjct: 162 -GQ--GNTDDYFEELRDLYQTYHVLVGD-----LIKFSAETLSELIRTTLDAEKVFT--Q 211

Query: 334 YM------HKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDP-SKYYEINSDENVMPI- 385
            +           T             PD+D  Y      S P S            P+ 
Sbjct: 212 GLNILEWLENPSNT-------------PDKD--YL----LSIPIS-----------CPLI 241

Query: 386 -AKSLARNVITNWFSQFT-----------------------ITVVDSW 409
               LA  V+T     FT                       I   DSW
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289



 Score = 39.2 bits (91), Expect = 0.002
 Identities = 23/148 (15%), Positives = 42/148 (28%), Gaps = 67/148 (45%)

Query: 5   KNF--------LLGV---LRLKKCTRGV-----------------FLVITAILLSSFVAI 36
           KN         L G+   LR  K   G+                 FL + +   S  +  
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP 434

Query: 37  VDVVVDQVTVMQKTAWLQEVLDHVIYRTSPKNL----YDLREAGRDNFIRHQIEKALNTY 92
                D +         ++++ + +   + K++    YD                   T+
Sbjct: 435 A---SDLI--------NKDLVKNNV-SFNAKDIQIPVYD-------------------TF 463

Query: 93  NSRDLSNTGSIESIVKDAV--ILTKNVN 118
           +  DL       SI +  V  I+   V 
Sbjct: 464 DGSDLRVLS--GSISERIVDCIIRLPVK 489



 Score = 27.6 bits (61), Expect = 5.3
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 16/63 (25%)

Query: 40   VVDQVTVMQKTAWLQEVLDHVIYRTSPKNLYDLREAGRD------NFIRHQ------IEK 87
            VV++V   ++T WL E++++ +         DLR    D      NFI+ Q      ++K
Sbjct: 1829 VVERVG--KRTGWLVEIVNYNVENQQYVAAGDLR--ALDTVTNVLNFIKLQKIDIIELQK 1884

Query: 88   ALN 90
            +L+
Sbjct: 1885 SLS 1887


>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
           {Homo sapiens} SCOP: c.62.1.1
          Length = 198

 Score = 29.8 bits (66), Expect = 1.1
 Identities = 15/162 (9%), Positives = 44/162 (27%), Gaps = 19/162 (11%)

Query: 239 VGTLTYSVDNKTTTREYYKDPYYATWDHFPYSFIKNVFDMTSNQFGDGQVLTNTNHCFPH 298
              + +S   +     +  + +  + +      + +V  +    +    +    +  F  
Sbjct: 48  FSLMQFSNKFQ---THFTFEEFRRSSNPLS--LLASVHQLQGFTYTATAIQNVVHRLFHA 102

Query: 299 GASQNKYMLMLAIGNQLSRSSVEKEKIEKVLQDCHYMHKRHRTGRDAITIFSVGFSPDQD 358
                +    + I     +   +    + V+                I  +++G      
Sbjct: 103 SYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAG---------IIRYAIGVGLAFQ 153

Query: 359 TRY---TLRQCASDPS--KYYEINSDENVMPIAKSLARNVIT 395
            R     L   AS PS    +++   + +  I   L   +  
Sbjct: 154 NRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIFA 195


>3dra_B Geranylgeranyltransferase type I beta subunit;
           geranylgeranyltrasferase, ggtase, ggtase-I, PGGT,
           prenyltransferase, farnesyltransferase; HET: B3P GRG;
           1.80A {Candida albicans}
          Length = 390

 Score = 29.3 bits (65), Expect = 1.6
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 10/124 (8%)

Query: 212 VKNFLSQIPYKNFCMAPYHYSSILYWAVGTLT--YSVDNKTTTREYYKDPYYATWDHFPY 269
               L  +P         +  +I+Y+ +  L              YY++     +     
Sbjct: 13  FNRCLIGLPST-AQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENN 71

Query: 270 SFIKNVFDMTSNQFGDGQVLTNTNHCFPHGASQNKYMLMLAIGNQLSRSSVEKEKIEKVL 329
             I      +++ F       N  +  P+ +S    +  L I      + + ++KI   L
Sbjct: 72  QIISFR---STHYFQKT----NQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFL 124

Query: 330 QDCH 333
             C 
Sbjct: 125 CKCQ 128


>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
           1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
           1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
           1u0o_C
          Length = 202

 Score = 28.7 bits (63), Expect = 2.5
 Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 331 DCHYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQCASDPS--KYYEINSDENVMPIAKS 388
           +     +  +  +  + +  VG  P  + +  +R         K + ++S + +      
Sbjct: 134 NFVRYVQGLK--KKKVIVIPVGIGPHANLK-QIRLIEKQAPENKAFVLSSVDELEQQRDE 190

Query: 389 LARNV 393
           +   +
Sbjct: 191 IVSYL 195


>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
           adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
           musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
          Length = 880

 Score = 27.1 bits (59), Expect = 7.6
 Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 360 RYTLRQCASDPSKYYEINSDENVMPIAKSLARNVITNWFSQFTITVV 406
            Y +    +DP+++  +N D  ++    +L R       + +T+ ++
Sbjct: 523 SYFI---GNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIML 566


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,532,244
Number of extensions: 158915
Number of successful extensions: 434
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 19
Length of query: 411
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 316
Effective length of database: 3,390,050
Effective search space: 1071255800
Effective search space used: 1071255800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)