Query gi|254781008|ref|YP_003065421.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 99
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 04:05:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781008.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09295 selenocysteine lyase; 55.3 7.8 0.0002 20.0 1.9 28 72-99 378-405 (406)
2 TIGR01979 sufS cysteine desulf 54.8 7.8 0.0002 20.0 1.8 28 72-99 381-408 (409)
3 pfam06550 DUF1119 Protein of u 50.7 3.3 8.4E-05 22.1 -0.6 28 36-66 150-177 (283)
4 COG2967 ApaG Uncharacterized p 42.8 13 0.00033 18.8 1.4 25 10-34 102-126 (126)
5 COG3098 Uncharacterized protei 26.8 56 0.0014 15.2 2.5 46 48-99 58-104 (109)
6 KOG2282 consensus 25.3 36 0.00091 16.3 1.3 57 36-97 558-626 (708)
7 TIGR00743 TIGR00743 conserved 24.8 37 0.00095 16.2 1.3 21 76-96 32-52 (97)
8 pfam11305 DUF3107 Protein of u 23.5 62 0.0016 14.9 2.2 18 21-38 2-19 (74)
9 PRK02948 cysteine desulfurase; 23.4 49 0.0013 15.5 1.7 28 72-99 348-375 (381)
10 KOG2804 consensus 21.4 31 0.00078 16.7 0.3 52 20-71 49-102 (348)
11 smart00604 MD MD domain. 20.5 75 0.0019 14.5 2.1 14 20-33 62-75 (145)
No 1
>PRK09295 selenocysteine lyase; Validated
Probab=55.35 E-value=7.8 Score=20.01 Aligned_cols=28 Identities=25% Similarity=0.543 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0113533354798999999998777519
Q gi|254781008|r 72 MRLSSVVYATREDCQKILRALSEVSKLF 99 (99)
Q Consensus 72 mrlssvvyatredcqkilralsevsklf 99 (99)
.|+|--.|.|.||..+.+.||.|+.|++
T Consensus 378 iRvS~~~ynT~eeId~lv~aL~~I~k~l 405 (406)
T PRK09295 378 CRASLAMYNTHEEVDRLVAGLQRIHRLL 405 (406)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9997889999999999999999999972
No 2
>TIGR01979 sufS cysteine desulfurases, SufS subfamily; InterPro: IPR010970 Cysteine desulphurases are pyridoxal-phosphate enzymes which catalyse the removal of sulphur from L-cysteine to form L-alanine and elemental sulphur. These enzymes have been shown to play an important role in the biosynthesis of iron-sulphur clusters, thionucleosides in tRNA, thiamine, biotin, lipoate and molydopterin This entry represents a subfamily of NifS-related cysteine desulphurases that are often involved in iron-sulphur cluster formation, which is needed for nitrogen fixation and other vital functions . Many of these enzymes, in addition to cysteine desulphurase activity, also show selenocysteine lyase activity where L-selenocysteine is converted to L-alanine and selenide . Some of these enzymes are much more specific for selenocysteine than cysteine and are thus believed to function in selenium metabolism rather than sulphur metabolism. Structural studies of the E. coli and Synechocystis enzymes indicate that they are homodimers which show a similar fold to other members of the alpha family of pyridoxal-phosphate enzymes .; GO: 0030170 pyridoxal phosphate binding, 0031071 cysteine desulfurase activity, 0006534 cysteine metabolic process.
Probab=54.81 E-value=7.8 Score=20.03 Aligned_cols=28 Identities=39% Similarity=0.583 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0113533354798999999998777519
Q gi|254781008|r 72 MRLSSVVYATREDCQKILRALSEVSKLF 99 (99)
Q Consensus 72 mrlssvvyatredcqkilralsevsklf 99 (99)
.|-|.-+|-|+||-+....+|..|-|+|
T Consensus 381 cRASf~~YNT~ediD~Lv~aL~~v~~~F 408 (409)
T TIGR01979 381 CRASFYLYNTEEDIDALVEALKKVRKFF 408 (409)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 7887410389899999999999999860
No 3
>pfam06550 DUF1119 Protein of unknown function (DUF1119). This family consists of several hypothetical archaeal proteins of unknown function.
Probab=50.65 E-value=3.3 Score=22.12 Aligned_cols=28 Identities=39% Similarity=0.503 Sum_probs=20.9
Q ss_pred EEEEEEEEEEEEEHHHHHHHHHCCCCCEEEE
Q ss_conf 9752000211133101001021166621421
Q gi|254781008|r 36 QCWSAYKYKHQLHMSDLSDTVIDLPNHISII 66 (99)
Q Consensus 36 qcwsaykykhqlhmsdlsdtvidlpnhisii 66 (99)
..||-||-| ||-+|.|+++|+.--+-.+
T Consensus 150 D~iaVykTk---HMl~LA~~~~dlklPil~V 177 (283)
T pfam06550 150 DAISVYKTK---HMITLARGVMDLDLPILFV 177 (283)
T ss_pred HHHHHHCCH---HHHHHHHHHHHCCCCEEEE
T ss_conf 898863207---7999999998548827999
No 4
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=42.85 E-value=13 Score=18.80 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=20.0
Q ss_pred CCCCCCCEEEEEEEEEEECCCCEEE
Q ss_conf 2255432147787654204885268
Q gi|254781008|r 10 SIGEHDAKFDITIPIGVLDSPRSIR 34 (99)
Q Consensus 10 sigehdakfditipigvldsprsir 34 (99)
-++|....|+++||.=.||.|+.++
T Consensus 102 M~~e~G~~F~v~Ip~F~L~vP~~~~ 126 (126)
T COG2967 102 MIDEDGETFDVAIPVFRLAVPGLLH 126 (126)
T ss_pred EECCCCCEEEEECCCEEECCCCCCC
T ss_conf 8537986977506755714764359
No 5
>COG3098 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.83 E-value=56 Score=15.21 Aligned_cols=46 Identities=28% Similarity=0.384 Sum_probs=36.2
Q ss_pred EHHHHHHHHHCCCCCEEEEEHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHC
Q ss_conf 31010010211666214210031001135333547-98999999998777519
Q gi|254781008|r 48 HMSDLSDTVIDLPNHISIITCMEDMRLSSVVYATR-EDCQKILRALSEVSKLF 99 (99)
Q Consensus 48 hmsdlsdtvidlpnhisiitcmedmrlssvvyatr-edcqkilralsevsklf 99 (99)
.|-.+-+.--.|||.++|-...| ++++.+ ++-+.+|-.|.+..+||
T Consensus 58 RM~~lle~~~~lP~~fai~PY~E------eAl~~~~~~~a~lLa~l~~ld~L~ 104 (109)
T COG3098 58 RMHALLESNQALPNAFAIAPYYE------EALAGDHPQRAALLAVLQELDALF 104 (109)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999974888875211018899------998501467999999999999997
No 6
>KOG2282 consensus
Probab=25.32 E-value=36 Score=16.30 Aligned_cols=57 Identities=33% Similarity=0.383 Sum_probs=29.0
Q ss_pred EEEEEEEEEEEEEHHHHHHHHHCCCCCEEEEEHHHCCC-----HHHH-------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 97520002111331010010211666214210031001-----1353-------33547989999999987775
Q gi|254781008|r 36 QCWSAYKYKHQLHMSDLSDTVIDLPNHISIITCMEDMR-----LSSV-------VYATREDCQKILRALSEVSK 97 (99)
Q Consensus 36 qcwsaykykhqlhmsdlsdtvidlpnhisiitcmedmr-----lssv-------vyatredcqkilralsevsk 97 (99)
.|.--|...| .|-.-..-|.---+++.||-|..- ++++ .-..|+| -||+||||||+-
T Consensus 558 d~fvvyqghh----gD~ga~~AdvvlpgaaytekeGtyvntegr~Qqt~pav~ppg~ar~d-wkIirALSevsg 626 (708)
T KOG2282 558 DCFVVYQGHH----GDVGAPIADVVLPGAAYTEKEGTYVNTEGRAQQTKPAVSPPGDARED-WKIIRALSEVSG 626 (708)
T ss_pred HHEEEEEEEE----CCCCCCCCEEECCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHCC
T ss_conf 3248863100----36565622153210157615660452447643225788998656561-699999998648
No 7
>TIGR00743 TIGR00743 conserved hypothetical protein; InterPro: IPR005272 These small proteins are approximately 100 amino acids in length and appear to be found only in gamma proteobacteria. The function of this protein family is unknown. .
Probab=24.79 E-value=37 Score=16.19 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 533354798999999998777
Q gi|254781008|r 76 SVVYATREDCQKILRALSEVS 96 (99)
Q Consensus 76 svvyatredcqkilralsevs 96 (99)
+-+|+||++-+..|..|.+-.
T Consensus 32 ~~~y~~~~~A~~~L~~Lt~kA 52 (97)
T TIGR00743 32 SRFYATRAEAEEVLAKLTEKA 52 (97)
T ss_pred EEEECCHHHHHHHHHHHHHHH
T ss_conf 787649789999999988876
No 8
>pfam11305 DUF3107 Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=23.47 E-value=62 Score=14.95 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.2
Q ss_pred EEEEEEECCCCEEEEEEE
Q ss_conf 876542048852689975
Q gi|254781008|r 21 TIPIGVLDSPRSIRIQCW 38 (99)
Q Consensus 21 tipigvldsprsiriqcw 38 (99)
-|-||+-|+||.+.+.+=
T Consensus 2 eIkIGv~~~~REl~ies~ 19 (74)
T pfam11305 2 EVKIGIQNSARELVFESA 19 (74)
T ss_pred EEEEEEECCCEEEEEECC
T ss_conf 799966448607999658
No 9
>PRK02948 cysteine desulfurase; Provisional
Probab=23.41 E-value=49 Score=15.52 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0113533354798999999998777519
Q gi|254781008|r 72 MRLSSVVYATREDCQKILRALSEVSKLF 99 (99)
Q Consensus 72 mrlssvvyatredcqkilralsevsklf 99 (99)
.|+|--.|.|.||..+.+.+|.++.+-|
T Consensus 348 vRvS~g~ynT~eeId~~i~al~~i~~~f 375 (381)
T PRK02948 348 VRFSFGQQTTKDQIDTTIHALETIGNQF 375 (381)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9997479999999999999999999998
No 10
>KOG2804 consensus
Probab=21.44 E-value=31 Score=16.68 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=44.3
Q ss_pred EEEEEEEECCC--CEEEEEEEEEEEEEEEEEHHHHHHHHHCCCCCEEEEEHHHC
Q ss_conf 78765420488--52689975200021113310100102116662142100310
Q gi|254781008|r 20 ITIPIGVLDSP--RSIRIQCWSAYKYKHQLHMSDLSDTVIDLPNHISIITCMED 71 (99)
Q Consensus 20 itipigvldsp--rsiriqcwsaykykhqlhmsdlsdtvidlpnhisiitcmed 71 (99)
||.+.+.+.+| |.+|+-|=.-|..-|+-||-.|-..---.||---|..|-.|
T Consensus 49 it~~~a~~~~p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~D 102 (348)
T KOG2804 49 ITTEMARLGLPTDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSD 102 (348)
T ss_pred HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 304445227988885589713048776466799999998738873799861373
No 11
>smart00604 MD MD domain.
Probab=20.48 E-value=75 Score=14.50 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=11.7
Q ss_pred EEEEEEEECCCCEE
Q ss_conf 78765420488526
Q gi|254781008|r 20 ITIPIGVLDSPRSI 33 (99)
Q Consensus 20 itipigvldsprsi 33 (99)
|+.|.|+||.+-.+
T Consensus 62 I~y~~~~lD~~n~~ 75 (145)
T smart00604 62 IVYHAGGLDNENAI 75 (145)
T ss_pred EEEEECCCCCCCCE
T ss_conf 99981555778835
Done!