Query gi|254781008|ref|YP_003065421.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 99 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 20:59:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781008.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1toc_R Ornithodorin; vitamin 45.1 5.9 0.00017 20.3 0.3 22 67-88 29-50 (64) 2 >3d7a_A UPF0201 protein PH1010 31.9 10 0.00031 19.0 -0.2 25 70-95 6-30 (138) 3 >1t3i_A Probable cysteine desu 26.7 38 0.0011 15.8 2.0 27 72-98 122-148 (156) 4 >3c9g_A UPF0200/UPF0201 protei 26.7 14 0.00042 18.2 -0.2 25 70-95 8-32 (142) 5 >2gol_A Matrix protein P17 (MA 26.1 48 0.0014 15.2 2.4 26 69-94 42-67 (133) 6 >1eg5_A Aminotransferase; PLP- 25.5 41 0.0012 15.6 2.0 29 70-98 99-127 (136) 7 >1ed1_A GAG polyprotein, SIV M 24.1 54 0.0016 14.9 2.4 26 69-94 41-66 (135) 8 >1l6n_A GAG polyprotein; matri 22.4 38 0.0011 15.8 1.3 26 69-94 41-66 (135) 9 >1elu_A L-cysteine/L-cystine C 16.0 42 0.0013 15.5 0.3 25 72-96 97-121 (122) 10 >2bwn_A 5-aminolevulinate synt 15.5 71 0.0021 14.3 1.4 28 72-99 112-139 (140) No 1 >>1toc_R Ornithodorin; vitamin K, zymogen, gamma-carboxyglutamic acid, acute phase, liver, hydrolase, serine protease kunitz-like inhibitor, kringle; 3.10A {Ornithodoros moubata} (R:1-64) Probab=45.14 E-value=5.9 Score=20.34 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=16.0 Q ss_pred EHHHCCCHHHHHHHHHHHHHHH Q ss_conf 0031001135333547989999 Q gi|254781008|r 67 TCMEDMRLSSVVYATREDCQKI 88 (99) Q Consensus 67 tcmedmrlssvvyatredcqki 88 (99) ||.-.-.-.+--||+.+||||. T Consensus 29 tc~~spac~~egyas~~~cq~a 50 (64) T 1toc_R 29 TCLMSPACTSEGYASQHECQQA 50 (64) T ss_dssp EEEEEEEETTSSBSSHHHHHHH T ss_pred CCCCCCCCCCCCCCCHHHHHHH T ss_conf 5557577888884599999977 No 2 >>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A {Pyrococcus horikoshii} (A:) Probab=31.88 E-value=10 Score=18.96 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=16.3 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10011353335479899999999877 Q gi|254781008|r 70 EDMRLSSVVYATREDCQKILRALSEV 95 (99) Q Consensus 70 edmrlssvvyatredcqkilralsev 95 (99) ...+++..||+| ||..|++.|++.+ T Consensus 6 ~~I~i~~~v~~T-ED~~KV~~Ai~ni 30 (138) T 3d7a_A 6 EEVEVEAYVYPT-EDIRKVKKAMLNL 30 (138) T ss_dssp SEEEEEEEECTT-BCHHHHHHHHHHH T ss_pred EEEEEEEEECCC-CCHHHHHHHHHHH T ss_conf 179999998587-8989999999986 No 3 >>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} (A:1-37,A:302-420) Probab=26.73 E-value=38 Score=15.80 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 011353335479899999999877751 Q gi|254781008|r 72 MRLSSVVYATREDCQKILRALSEVSKL 98 (99) Q Consensus 72 mrlssvvyatredcqkilralsevskl 98 (99) .|+|--.|.|.||..+.++++.++.+. T Consensus 122 IRiS~~~ynT~eEID~lv~aL~~i~~~ 148 (156) T 1t3i_A 122 ARASLYFYNTKEEIDLFLQSLQATIRF 148 (156) T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999798999999999999999999999 No 4 >>3c9g_A UPF0200/UPF0201 protein AF_1395; uncharacterized UPF0201 protein AF_135, structural genomics, PSI-II, dimer; 2.30A {Archaeoglobus fulgidus dsm 4304} (A:) Probab=26.68 E-value=14 Score=18.18 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=16.7 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10011353335479899999999877 Q gi|254781008|r 70 EDMRLSSVVYATREDCQKILRALSEV 95 (99) Q Consensus 70 edmrlssvvyatredcqkilralsev 95 (99) ...+++..||+| ||..|++.|+..+ T Consensus 8 ~~I~i~~~v~~T-ED~eKV~~Ai~ni 32 (142) T 3c9g_A 8 VEIEIRTKIHPT-ESEDKVLKAIRNI 32 (142) T ss_dssp EEEEEEEECCTT-BCHHHHHHHHHHH T ss_pred EEEEEEEEECCC-CCHHHHHHHHHHH T ss_conf 089999997288-7989999999975 No 5 >>2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} (A:) Probab=26.06 E-value=48 Score=15.22 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=19.1 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31001135333547989999999987 Q gi|254781008|r 69 MEDMRLSSVVYATREDCQKILRALSE 94 (99) Q Consensus 69 medmrlssvvyatredcqkilralse 94 (99) +|...|..-...|.|.||+|+..|.. T Consensus 42 LeRFaLnp~LLeT~EGC~qIi~qL~P 67 (133) T 2gol_A 42 LERFAVNPGLLETSEGCRQILGQLQP 67 (133) T ss_dssp HHHTTBCGGGGGSHHHHHHHHHHHHH T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCC T ss_conf 88871792244469999999998664 No 6 >>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S beta lyase; HET: PLP; 2.00A {Thermotoga maritima} (A:1-10,A:259-384) Probab=25.55 E-value=41 Score=15.58 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=24.6 Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10011353335479899999999877751 Q gi|254781008|r 70 EDMRLSSVVYATREDCQKILRALSEVSKL 98 (99) Q Consensus 70 edmrlssvvyatredcqkilralsevskl 98 (99) .-.|+|-..|.|.||++..+.++.++.+- T Consensus 99 g~iRiS~g~~tT~edId~l~~~l~~~~~~ 127 (136) T 1eg5_A 99 GAIRISLCKYNTEEEVDYFLKKIEEILSF 127 (136) T ss_dssp HEEEEECCTTCCHHHHHHHHHHHHHHHHH T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 67999647889999999999999999998 No 7 >>1ed1_A GAG polyprotein, SIV MA; trimeric association, viral protein; 2.10A {Simian immunodeficiency virus - mac} (A:) Probab=24.09 E-value=54 Score=14.91 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=19.6 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31001135333547989999999987 Q gi|254781008|r 69 MEDMRLSSVVYATREDCQKILRALSE 94 (99) Q Consensus 69 medmrlssvvyatredcqkilralse 94 (99) +|...|..-...|.|.|++|+..|.. T Consensus 41 LeRFalnp~LLeT~eGC~qIl~qL~P 66 (135) T 1ed1_A 41 LDRFGLAESLLENKEGCQKILSVLAP 66 (135) T ss_dssp HHHTTCCGGGGGSHHHHHHHHHHHGG T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCC T ss_conf 87760681134408899999998262 No 8 >>1l6n_A GAG polyprotein; matrix, capsid, maturation, viral protein; NMR {Human immunodeficiency virus 1} (A:1-135) Probab=22.37 E-value=38 Score=15.80 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=19.3 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 31001135333547989999999987 Q gi|254781008|r 69 MEDMRLSSVVYATREDCQKILRALSE 94 (99) Q Consensus 69 medmrlssvvyatredcqkilralse 94 (99) +|...|+.-...|.|.||+|+..|.- T Consensus 41 LeRFaLnp~LLeT~EGC~qIi~qL~P 66 (135) T 1l6n_A 41 LERFAVNPGLLETSEGCRQILGQLQP 66 (135) T ss_dssp HHHTTSCGGGTTSHHHHHHHHHTTHH T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHCC T ss_conf 77761794201047899999998561 No 9 >>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocysteine, aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} (A:1-25,A:294-390) Probab=15.97 E-value=42 Score=15.52 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0113533354798999999998777 Q gi|254781008|r 72 MRLSSVVYATREDCQKILRALSEVS 96 (99) Q Consensus 72 mrlssvvyatredcqkilralsevs 96 (99) .|+|--.|-|+||-++.+.++.+++ T Consensus 97 iRiS~~~~~T~edID~li~aL~eia 121 (122) T 1elu_A 97 IRACCHYITDEEEINHLLARLADFG 121 (122) T ss_dssp EEEECCTTCCHHHHHHHHHHHTTCC T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 9997678899999999999999769 No 10 >>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal phosphate dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} (A:22-57,A:298-401) Probab=15.45 E-value=71 Score=14.26 Aligned_cols=28 Identities=7% Similarity=0.103 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 0113533354798999999998777519 Q gi|254781008|r 72 MRLSSVVYATREDCQKILRALSEVSKLF 99 (99) Q Consensus 72 mrlssvvyatredcqkilralsevsklf 99 (99) .|+|--.+-|+||-++++.+|.++.+.+ T Consensus 112 LRisl~a~hT~edId~lv~aL~ev~~~l 139 (140) T 2bwn_A 112 LRFTPSPVHDLKQIDGLVHAMDLLWARC 139 (140) T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHC--- T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9997476689999999999999999851 Done!