BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781008|ref|YP_003065421.1| hypothetical protein
CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62]
         (99 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781008|ref|YP_003065421.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040685|gb|ACT57481.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 99

 Score =  192 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MSEDVIIHSSIGEHDAKFDITIPIGVLDSPRSIRIQCWSAYKYKHQLHMSDLSDTVIDLP 60
          MSEDVIIHSSIGEHDAKFDITIPIGVLDSPRSIRIQCWSAYKYKHQLHMSDLSDTVIDLP
Sbjct: 1  MSEDVIIHSSIGEHDAKFDITIPIGVLDSPRSIRIQCWSAYKYKHQLHMSDLSDTVIDLP 60

Query: 61 NHISIITCMEDMRLSSVVYATREDCQKILRALSEVSKLF 99
          NHISIITCMEDMRLSSVVYATREDCQKILRALSEVSKLF
Sbjct: 61 NHISIITCMEDMRLSSVVYATREDCQKILRALSEVSKLF 99


>gi|261252202|ref|ZP_05944775.1| metallo-beta-lactamase family protein RNA-specific [Vibrio
           orientalis CIP 102891]
 gi|260935593|gb|EEX91582.1| metallo-beta-lactamase family protein RNA-specific [Vibrio
           orientalis CIP 102891]
          Length = 438

 Score = 35.0 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)

Query: 14  HDAKFDITIPIGVLDSPRSIRI--------QCW-SAYKYKHQLHMSDLS----DTVIDLP 60
           HD + DI+IPI +LDSP + R+        Q W    K + ++H   L+     TV D  
Sbjct: 246 HDHQIDISIPI-ILDSPMAQRVTRSYRRFKQLWGQEAKQRLKMHRHPLAFEQCITVEDYR 304

Query: 61  NHISIITCMEDMRLSSVVYATREDCQ 86
            H  ++  ++  R +++V A    CQ
Sbjct: 305 THQRLVNRLQSTREAAIVVAASGMCQ 330


>gi|301094566|ref|XP_002896388.1| 3-phosphoinositide-dependent protein kinase, putative [Phytophthora
           infestans T30-4]
 gi|262109571|gb|EEY67623.1| 3-phosphoinositide-dependent protein kinase, putative [Phytophthora
           infestans T30-4]
          Length = 457

 Score = 35.0 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 3   EDVIIHSSIGEHDAKFDITIPIGVLDSPRSIRIQCWSAYKYKHQLHMS-DLSDTVIDLPN 61
           E +   S++      F+ T  + + D+PR I I  WS  ++K +L ++ D +   ID P+
Sbjct: 367 EQIRFESTVKVRSKMFNRTRDLYLTDAPRLIVISAWSG-RFKRELFLTPDTTVNEID-PH 424

Query: 62  HISIITCMEDMRLSSVVYATREDCQKILRALSE 94
              ++T  E +R++      ++  + IL A+SE
Sbjct: 425 TFDVVTRSETIRITDSNNLAQQWARAILEAVSE 457


>gi|332375412|gb|AEE62847.1| unknown [Dendroctonus ponderosae]
          Length = 242

 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 25/98 (25%)

Query: 9   SSIGEHDAKFDITI-----------PIGVLDSPRSIRIQC-WSAYKYK---HQLHMSDLS 53
           SSI + D KF+IT+           P  V   P ++ +   W++ K K    ++H++ L 
Sbjct: 7   SSILKSDGKFEITLDQRKLKTPKGSPFLVDTEPLALAVATEWNSQKGKIVQSKMHITTLC 66

Query: 54  DTVIDLPNHIS-------IITCMEDMRLSSVVYATRED 84
           +TV+D PN+++       I+ C++     +V+Y   ED
Sbjct: 67  NTVLDNPNNLTKLDIVNYIVNCLDT---DTVLYQANED 101


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.323    0.135    0.398 

Lambda     K      H
   0.267   0.0443    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,075,851,520
Number of Sequences: 14124377
Number of extensions: 44756002
Number of successful extensions: 79038
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 79036
Number of HSP's gapped (non-prelim): 5
length of query: 99
length of database: 4,842,793,630
effective HSP length: 68
effective length of query: 31
effective length of database: 3,882,335,994
effective search space: 120352415814
effective search space used: 120352415814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 76 (33.8 bits)