RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781008|ref|YP_003065421.1| hypothetical protein
CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62]
         (99 letters)



>gnl|CDD|182459 PRK10436, PRK10436, hypothetical protein; Provisional.
          Length = 462

 Score = 29.1 bits (66), Expect = 0.28
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 13/59 (22%)

Query: 21 TIPIGVLDSP-------------RSIRIQCWSAYKYKHQLHMSDLSDTVIDLPNHISII 66
          T+ + V+D+P             + I I+CW   + +  L  +  +  V D      + 
Sbjct: 27 TLHVAVVDAPSHELLDALRFATGKRIEIECWPRAQMEQHLQRTQQTLPVADQEKDTPVA 85


>gnl|CDD|150713 pfam10070, DUF2309, Uncharacterized protein conserved in bacteria
           (DUF2309).  Members of this family of hypothetical
           bacterial proteins have no known function.
          Length = 783

 Score = 28.0 bits (63), Expect = 0.60
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 70  EDMRLSSVVYATREDCQKILRALSEVSKLF 99
           E +RL  V+ A  E  ++IL     V  L 
Sbjct: 749 EPLRLLVVIEAPPEAIERILARHPAVRALV 778


>gnl|CDD|181042 PRK07575, PRK07575, dihydroorotase; Provisional.
          Length = 438

 Score = 25.4 bits (56), Expect = 3.2
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 12/50 (24%)

Query: 4   DVIIHSSIGEHDAKFDITIPIGVLDSPRSIRIQCWSAYKYKHQLHMSDLS 53
           D   HS I + +A         +L +  ++++    + KY+ +LH+  LS
Sbjct: 197 DPADHSQIQDEEA--------ALLATRLALKL----SKKYQRRLHILHLS 234


>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufS subfamily.  This model
           represents a subfamily of NifS-related cysteine
           desulfurases involved in FeS cluster formation needed
           for nitrogen fixation among other vital functions. Many
           cysteine desulfurases are also active as selenocysteine
           lyase and/or cysteine sulfinate desulfinase. This
           subfamily is associated with the six-gene SUF system
           described in E. coli and Erwinia as an FeS cluster
           formation system during oxidative stress. The active
           site Cys is this subfamily resembles GHHC with one or
           both His conserved.
          Length = 403

 Score = 25.3 bits (56), Expect = 4.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 73  RLSSVVYATREDCQKILRALSEVSKLF 99
           R S  +Y T ED   ++ AL +V K F
Sbjct: 376 RASFYIYNTEEDIDALVEALKKVRKFF 402


>gnl|CDD|178310 PLN02708, PLN02708, Probable pectinesterase/pectinesterase
           inhibitor.
          Length = 553

 Score = 24.4 bits (53), Expect = 6.8
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 5/35 (14%)

Query: 37  CWSAYKYKHQLH-----MSDLSDTVIDLPNHISII 66
           CWSA KY +        MS L   +    N +S++
Sbjct: 158 CWSALKYVNDTSQVNDTMSFLDSLIGLTSNALSMM 192


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0749    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,517,602
Number of extensions: 79555
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 13
Length of query: 99
Length of database: 5,994,473
Length adjustment: 66
Effective length of query: 33
Effective length of database: 4,568,345
Effective search space: 150755385
Effective search space used: 150755385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.0 bits)