RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781008|ref|YP_003065421.1| hypothetical protein
CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62]
(99 letters)
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 28.8 bits (64), Expect = 0.33
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 59 LPNHISIITCMEDMRLSSVVYATREDCQKILRALSEVS 96
L +HI R+S ED ++L AL+E S
Sbjct: 309 LHHHI---------RIS---IGREEDNDRLLAALAEYS 334
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural genomics, PSI, protein structure
initiative; HET: PLP; 2.00A {Escherichia coli} SCOP:
c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 28.2 bits (62), Expect = 0.51
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 73 RLSSVVYATREDCQKILRALSEVSKLF 99
R S +Y T E+ +++ L + +L
Sbjct: 379 RASLAMYNTHEEVDRLVTGLQRIHRLL 405
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 27.0 bits (59), Expect = 1.2
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 72 MRLSSVVYATREDCQKILRALSEVSKL 98
+R + E+ L A +E+ KL
Sbjct: 344 LRTT---IGVPEENDAFLDAAAEIIKL 367
>3ly1_A Putative histidinol-phosphate aminotransferase; structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 26.5 bits (58), Expect = 1.3
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 72 MRLSSVVYATREDCQKILRALSEVSK 97
R+S T ++ Q + + E K
Sbjct: 328 CRIS---LGTPQEMQWVADTMREFRK 350
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 26.1 bits (56), Expect = 1.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 73 RLSSVVYATREDCQKILRALSEVSKLF 99
R S Y T+E+ L++L + F
Sbjct: 387 RASLYFYNTKEEIDLFLQSLQATIRFF 413
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), structural genomics;
HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 25.4 bits (54), Expect = 3.2
Identities = 7/47 (14%), Positives = 23/47 (48%)
Query: 51 DLSDTVIDLPNHISIITCMEDMRLSSVVYATREDCQKILRALSEVSK 97
++ + D ++S+ C++ +R+ + + RE + L+ + +
Sbjct: 350 EVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 24.7 bits (53), Expect = 4.7
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 72 MRLSSVVYATREDCQKILRALSEVSK 97
+R + + K LRAL V
Sbjct: 337 VRFA---IKDEKKNTKFLRALKGVEN 359
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S beta lyase; HET: PLP; 2.00A {Thermotoga
maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 24.8 bits (53), Expect = 4.8
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 73 RLSSVVYATREDCQKILRALSEVSKLF 99
R+S Y T E+ L+ + E+
Sbjct: 350 RISLCKYNTEEEVDYFLKKIEEILSFL 376
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis H37RV}
Length = 406
Score = 24.7 bits (52), Expect = 5.4
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 73 RLSSVVYATREDCQKILRALSEV 95
+ Y+T + +++RAL+ +
Sbjct: 383 TVGLAHYSTMAEVDQLVRALASL 405
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria innocua
CLIP11262, structural genomics, PSI-2, protein structure
initiative; 2.31A {Listeria innocua}
Length = 363
Score = 24.0 bits (51), Expect = 7.4
Identities = 5/37 (13%), Positives = 12/37 (32%), Gaps = 12/37 (32%)
Query: 59 LPNHISIITCMEDMRLSSVVYATREDCQKILRALSEV 95
P + R++ ED ++ L ++
Sbjct: 338 FPTAV---------RIT---IGKEEDNSAVIALLEKL 362
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein;
HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP:
e.57.1.1
Length = 392
Score = 24.0 bits (52), Expect = 8.6
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 7 IHSSIGEHDAKFDITIPIGVLDSPRSIRIQCWSAYKYKHQLHMSDLSDTVIDLPNHISII 66
I + E T+PI + P + W K+K + DL +
Sbjct: 85 ILQGLNETSTNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLI-----SNESS 139
Query: 67 TCMEDMRLSSVVYAT-REDCQKILR 90
D+R + Y + + + R
Sbjct: 140 QLDADVRATYANYNSAKTNLAAAER 164
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocysteine, aminoacrylate,
enzyme-product complex; HET: PDA; 1.55A {Synechocystis
SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 24.0 bits (51), Expect = 8.6
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 73 RLSSVVYATREDCQKILRALSEV 95
R E+ +L L++
Sbjct: 366 RACCHYITDEEEINHLLARLADF 388
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.135 0.398
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 827,601
Number of extensions: 32524
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 22
Length of query: 99
Length of database: 5,693,230
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,117,370
Effective search space: 139990580
Effective search space used: 139990580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.4 bits)