BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781008|ref|YP_003065421.1| hypothetical protein
CLIBASIA_04550 [Candidatus Liberibacter asiaticus str. psy62]
         (99 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781008|ref|YP_003065421.1| hypothetical protein CLIBASIA_04550 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 99

 Score =  202 bits (514), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MSEDVIIHSSIGEHDAKFDITIPIGVLDSPRSIRIQCWSAYKYKHQLHMSDLSDTVIDLP 60
          MSEDVIIHSSIGEHDAKFDITIPIGVLDSPRSIRIQCWSAYKYKHQLHMSDLSDTVIDLP
Sbjct: 1  MSEDVIIHSSIGEHDAKFDITIPIGVLDSPRSIRIQCWSAYKYKHQLHMSDLSDTVIDLP 60

Query: 61 NHISIITCMEDMRLSSVVYATREDCQKILRALSEVSKLF 99
          NHISIITCMEDMRLSSVVYATREDCQKILRALSEVSKLF
Sbjct: 61 NHISIITCMEDMRLSSVVYATREDCQKILRALSEVSKLF 99


>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 371

 Score = 23.5 bits (49), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 44  KHQLHMSDLSDTVIDLPNHISIITCMEDMRLSSVVYA 80
           K+ + ++D  ++  ++ N  S+  C E  R  ++VYA
Sbjct: 285 KYIIFLTDGENSSPNIDNKESLFYCNEAKRRGAIVYA 321


>gi|254781211|ref|YP_003065624.1| hypothetical protein CLIBASIA_05590 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 234

 Score = 22.3 bits (46), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 49 MSDLSDTVIDLPNHISIITCMEDMR 73
          MSD +D +  LP+   ++ C    R
Sbjct: 1  MSDETDQLTPLPSTPPVVECERSQR 25


>gi|254780379|ref|YP_003064792.1| flagellar hook-basal body protein FliE [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 108

 Score = 20.8 bits (42), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 9/12 (75%), Positives = 11/12 (91%)

Query: 87  KILRALSEVSKL 98
           KIL A+SEVSK+
Sbjct: 95  KILSAVSEVSKM 106


>gi|254780682|ref|YP_003065095.1| hypothetical protein CLIBASIA_02845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 199

 Score = 20.0 bits (40), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 54  DTVIDLPNHISIITCMEDMRL 74
           +T I LPN++    C+++ +L
Sbjct: 139 ETKIPLPNNLKPNVCVKEKKL 159


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,287
Number of Sequences: 1233
Number of extensions: 2462
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 99
length of database: 328,796
effective HSP length: 61
effective length of query: 38
effective length of database: 253,583
effective search space:  9636154
effective search space used:  9636154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 32 (16.9 bits)