Query         gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 750
No_of_seqs    168 out of 175
Neff          5.1 
Searched_HMMs 39220
Date          Mon May 30 03:20:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781009.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam06748 DUF1217 Protein of u 100.0       0       0  360.1  14.7  150  533-688     1-150 (150)
  2 pfam06748 DUF1217 Protein of u 100.0 2.7E-41       0  265.4  10.6  138   61-198     1-150 (150)
  3 PHA00368 internal virion prote  85.7     1.9 4.8E-05   21.1   4.9   94  488-584   689-809 (1316)
  4 TIGR01083 nth endonuclease III  69.9       3 7.6E-05   19.9   1.9   66  616-695   100-165 (192)
  5 TIGR01259 comE comEA protein;   63.7       6 0.00015   18.1   2.5   21  502-522    86-106 (124)
  6 PRK07209 ribonucleotide-diphos  49.3      16 0.00042   15.5   6.3   61  391-452   168-258 (391)
  7 KOG1961 consensus               48.4      17 0.00043   15.4   9.5  149  423-578   436-608 (683)
  8 KOG3543 consensus               45.5      19 0.00048   15.1   4.7   24  150-173   203-226 (1218)
  9 COG4342 Uncharacterized protei  43.3      20 0.00052   14.9   3.5   47  509-556    69-115 (291)
 10 PRK10852 thiosulfate transport  42.7      21 0.00053   14.8   3.8   25  392-417   165-189 (338)
 11 COG3814 Uncharacterized protei  42.4      13 0.00034   16.0   1.4   17  155-171     8-24  (157)
 12 pfam08566 Pam17 Mitochondrial   41.3     5.8 0.00015   18.2  -0.6   26  504-529   143-168 (174)
 13 PRK10363 cpxP periplasmic repr  34.4      28 0.00071   14.1   3.1   58  656-713    98-155 (166)
 14 pfam06599 DUF1139 Protein of u  33.3      28 0.00073   14.0   1.9   26  392-417   283-308 (309)
 15 PRK11904 bifunctional proline   33.2      29 0.00074   14.0   1.9   48  383-434   430-486 (1026)
 16 pfam10875 DUF2670 Protein of u  29.5      32 0.00083   13.7   1.7   32  632-664    20-51  (139)
 17 PRK08032 fliD flagellar cappin  28.2      33 0.00085   13.6   1.6   27  664-697   418-444 (463)
 18 pfam01216 Calsequestrin Calseq  27.8      36 0.00093   13.4   2.4   52  645-696   292-346 (350)
 19 TIGR01830 3oxo_ACP_reduc 3-oxo  27.6      37 0.00093   13.4   3.1  142  513-702    56-225 (238)
 20 pfam07147 PDCD9 Mitochondrial   27.3      22 0.00057   14.7   0.5   74    2-83     31-115 (423)
 21 PRK11779 sbcB exonuclease I; P  25.0      34 0.00088   13.5   1.2   36  540-575   373-408 (477)
 22 KOG0917 consensus               24.6      42  0.0011   13.0   3.6   40  512-551   292-331 (338)
 23 TIGR02793 nikR nickel-responsi  24.1      29 0.00073   14.0   0.6   26    6-31     56-84  (130)
 24 pfam07304 SRA1 Steroid recepto  23.7      43  0.0011   12.9   2.2   45  663-708    68-112 (157)
 25 PRK07737 fliD flagellar cappin  21.8      44  0.0011   12.9   1.2   27  664-697   453-479 (502)

No 1  
>pfam06748 DUF1217 Protein of unknown function (DUF1217). This family represents a conserved region that is found within bacterial proteins, most of which are hypothetical. Some members contain multiple copies.
Probab=100.00  E-value=0  Score=360.12  Aligned_cols=150  Identities=33%  Similarity=0.566  Sum_probs=145.4

Q ss_pred             HCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             54888544128999999622788855777521647899999761877657655677432245667999999999877888
Q gi|254781009|r  533 SKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEK  612 (750)
Q Consensus       533 AfGL~~~~~~~~~i~kvL~sd~~d~~slaN~l~D~ry~~la~aF~F~~~G~~~~~~~~~~q~~~~~~~i~d~Y~~qs~E~  612 (750)
                      ||||+++++++++|||||+||++||+||||+|+|+||++|+++|||+++|..      .+|+.+++.+|+++|++|+||.
T Consensus         1 AfGLed~~~~ka~ikkvL~sd~~d~~S~aN~L~D~Ry~~lA~AF~F~~~g~~------~~q~~~~~~~iv~~Y~~~~~E~   74 (150)
T pfam06748         1 AFGLEDMIYAKAFIKKVLESDLSDPDSFANKLSDKRYREFAAAFNFGADGTL------ATQTAAQTQATVDKYLRQSLEE   74 (150)
T ss_pred             CCCCHHHHCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCC------CCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9994010220899999981599972789987088999999998489988875------4367889999999999999999


Q ss_pred             HHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCHHHCCCHHHHH
Q ss_conf             7300385469999998632550029987277899999999704867663199999999999621978649989999
Q gi|254781009|r  613 KEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVE  688 (750)
Q Consensus       613 ~~Ge~n~gvRLALyF~R~a~~Its~y~ILgD~aL~~V~~TAlgLP~~~a~~DiDkQa~li~~k~Di~dl~DP~kv~  688 (750)
                      ++|++|+||||||||+|++|+|+|||+||||++|++||+||||||++|+++|||||+++|++|+||++|+||++|+
T Consensus        75 ~~g~~n~~~rlALyf~r~~~~its~~~iL~d~~L~~v~~talgLp~~~~~~did~Q~~~i~~~ld~sdl~DP~~v~  150 (150)
T pfam06748        75 AAGEQNEGVRLALYFRRKAGTITSAYDILADPALREVALTALGLPSSVSALDIDKQAELIKKKLDLSDLSDPKSVV  150 (150)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCHHHCCCCCCCC
T ss_conf             9735577799999999971778569999878889999999929997762489999999999852787548930129


No 2  
>pfam06748 DUF1217 Protein of unknown function (DUF1217). This family represents a conserved region that is found within bacterial proteins, most of which are hypothetical. Some members contain multiple copies.
Probab=100.00  E-value=2.7e-41  Score=265.40  Aligned_cols=138  Identities=33%  Similarity=0.546  Sum_probs=129.1

Q ss_pred             HCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHH-HHHHHHHHCCCC
Q ss_conf             7597244105999999982689983301332066899999998187877-76442036788998877-876775301221
Q gi|254781009|r   61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPP-PKVIQSDIQHKTIIQDY-KQSHQHKEEVAL  138 (750)
Q Consensus        61 A~GLedm~~aka~~kKVLesd~~D~~s~aNkL~D~Ry~~fA~af~F~~~-~~~~~~~~~~~~~i~~y-~~~~~~~~~~~~  138 (750)
                      |||||||+|+|+|||||||||++||+||||||+|+||++||++|||+++ +..+|+..+++.++++| .++++...+.++
T Consensus         1 AfGLed~~~~ka~ikkvL~sd~~d~~S~aN~L~D~Ry~~lA~AF~F~~~g~~~~q~~~~~~~iv~~Y~~~~~E~~~g~~n   80 (150)
T pfam06748         1 AFGLEDMIYAKAFIKKVLESDLSDPDSFANKLSDKRYREFAAAFNFGADGTLATQTAAQTQATVDKYLRQSLEEAAGEQN   80 (150)
T ss_pred             CCCCHHHHCCHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99940102208999999815999727899870889999999984899888754367889999999999999999973557


Q ss_pred             HHHH---HHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCHHHCCHH------HHHHHH-CCCCCCCHHHH
Q ss_conf             0458---898511345899997243899999999739872120389------998874-18877700233
Q gi|254781009|r  139 EESK---YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLP------FLKDVL-TLGLANPKKYF  198 (750)
Q Consensus       139 ~~~~---Yf~~~~~~ItsvddLL~D~~L~~vv~tAfGL~~~~~s~~------~lk~vL-tsD~sDp~S~~  198 (750)
                      ++++   ||+|++++|+++|+||+|++|++||+||||||+++...+      ++++.| .+|++||.+++
T Consensus        81 ~~~rlALyf~r~~~~its~~~iL~d~~L~~v~~talgLp~~~~~~did~Q~~~i~~~ld~sdl~DP~~v~  150 (150)
T pfam06748        81 EGVRLALYFRRKAGTITSAYDILADPALREVALTALGLPSSVSALDIDKQAELIKKKLDLSDLSDPKSVV  150 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCHHHCCCCCCCC
T ss_conf             7799999999971778569999878889999999929997762489999999999852787548930129


No 3  
>PHA00368 internal virion protein D
Probab=85.66  E-value=1.9  Score=21.07  Aligned_cols=94  Identities=17%  Similarity=0.292  Sum_probs=49.7

Q ss_pred             CCCCHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHCCHHHHHHHH-HHCCCCHH--------------------HHHHHH
Q ss_conf             11102456678889899-999974156678999941489999998-75488854--------------------412899
Q gi|254781009|r  488 EQISTQKRINLEINSEV-DYYTLNINTIHSFEELLANKRILNFLL-ESKGIDSQ--------------------KVREDF  545 (750)
Q Consensus       488 ~~~~~~~~~~~~~~~e~-~yf~~~i~~i~s~~dll~D~rl~~~aL-~AfGL~~~--------------------~~~~~~  545 (750)
                      --|-+..+.++.|...+ +|+.+.++.  ++.+.+.- .+-.+|+ +|||+.-.                    -++--.
T Consensus       689 ~SWltSY~sRpeVKaRvDe~lkE~~g~--~v~evt~e-~VekyA~dKAYGIShTd~F~~Ssvieeni~glvGiEnN~FLE  765 (1316)
T PHA00368        689 KSWLTSYRSRPEVKARVDEYLKELLGI--DVKEVTPE-MVEKYAMDKAYGISHTDQFTRSSVIEENIEGLVGIENNSFLE  765 (1316)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHCC--CHHHHHHH-HHHHHHHHHHCCCCCHHCCCCCHHHHCCCHHHHCCCCCCHHH
T ss_conf             999887302446899999999987363--41667699-999986411116661210341025541321331445540777


Q ss_pred             HHHHHHCCCC-----CHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             9999622788-----85577752164789999976187765765
Q gi|254781009|r  546 LCEIFKSDLK-----DPKSFANTYKDNRYKEIISSFNFDIHGEL  584 (750)
Q Consensus       546 i~kvL~sd~~-----d~~slaN~l~D~ry~~la~aF~F~~~G~~  584 (750)
                      .|-.|.||..     ...=-+|-|.+-.++.+--+++=--.|.+
T Consensus       766 ARNLFDSDm~V~lpdGqtFSVNDLR~~Dm~~impaYDRRVnGDI  809 (1316)
T PHA00368        766 ARNLFDSDMSVTLPDGQTFSVNDLRDFDMKKIMPAYDRRVNGDI  809 (1316)
T ss_pred             HHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             76412567732678998200232665035541134315447744


No 4  
>TIGR01083 nth endonuclease III; InterPro: IPR005759    The spectrum of DNA damage caused by reactive oxygen species includes a wide variety of modifications of purine and pyrimidine bases. Among these modified bases, 7,8-dihydro-8-oxoguanine (8-oxoG) is an important mutagenic lesion. Base excision repair is a critical mechanism for preventing mutations by removing the oxidative lesion from the DNA. Escherichia coli Nth protein (endonuclease III) has an 8-oxoG DNA glycosylase/AP lyase activity which removes 8-oxoG preferentially from 8-oxoG/G mispairs. Human hNTH1 protein, a homolog of E. coli Nth protein, has similar DNA glycosylase/AP lyase activity that removes 8-oxoG from 8-oxoG/G mispairs . ; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=69.91  E-value=3  Score=19.89  Aligned_cols=66  Identities=17%  Similarity=0.228  Sum_probs=47.2

Q ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHH
Q ss_conf             03854699999986325500299872778999999997048676631999999999996219786499899999999987
Q gi|254781009|r  616 EKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAK  695 (750)
Q Consensus       616 e~n~gvRLALyF~R~a~~Its~y~ILgD~aL~~V~~TAlgLP~~~a~~DiDkQa~li~~k~Di~dl~DP~kv~kli~RF~  695 (750)
                      .+=|.=+-+|   =++|++       |-+.===|..+|||+|    .+-+|.-+.-+.+|+.|+.=.||.+||+=+.+..
T Consensus       100 GeVP~~~~eL---~~LPGV-------GRKTANVVL~~aFg~P----~iAVDTHv~Rv~~Rlgl~~~~dp~~vE~~L~~l~  165 (192)
T TIGR01083       100 GEVPEDREEL---VKLPGV-------GRKTANVVLNVAFGIP----AIAVDTHVFRVSNRLGLSKGKDPDKVEEELLKLI  165 (192)
T ss_pred             CCCCCCHHHH---HCCCCC-------CCHHHHHHHHHHHCCC----EEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf             9877553766---178998-------7114562433442687----0574143465543313577789899999998744


No 5  
>TIGR01259 comE comEA protein; InterPro: IPR004787   The comE locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. comEA and comEC are required for transformability, whereas the products of comEB and of the overlapping comER, which is transcribed in the reverse direction, are dispensable .   ComEA has been shown to be an integral membrane protein, as predicted from hydropathy analysis, with its C-terminal domain outside the cytoplasmic membrane. This C-terminal domain possesses a sequence with similarity to those of several proteins known to be involved in nucleic acid transactions including UvrC and a human protein that binds to the replication origin of the Human herpesvirus 4 (Epstein-Barr virus) ..
Probab=63.75  E-value=6  Score=18.09  Aligned_cols=21  Identities=14%  Similarity=0.196  Sum_probs=10.9

Q ss_pred             HHHHHHHHHCCCCCCHHHHHC
Q ss_conf             899999974156678999941
Q gi|254781009|r  502 SEVDYYTLNINTIHSFEELLA  522 (750)
Q Consensus       502 ~e~~yf~~~i~~i~s~~dll~  522 (750)
                      .+|--||+.=|..+|+|||.+
T Consensus        86 ~aIi~YRe~nG~F~SvddL~k  106 (124)
T TIGR01259        86 KAIIEYREENGAFKSVDDLTK  106 (124)
T ss_pred             HHHHHHHHHCCCCCCHHHHHC
T ss_conf             999999985699777555003


No 6  
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=49.26  E-value=16  Score=15.47  Aligned_cols=61  Identities=10%  Similarity=0.213  Sum_probs=33.3

Q ss_pred             HHHHHHHHHCCCCHHHHHHHH------------HHHHHHCCCCCCHHHHHHCCCHH------------------HHHHHH
Q ss_conf             799999998098822546999------------99996338887013542014315------------------788887
Q gi|254781009|r  391 ITLQFALDAYNLNMQDLDRDQ------------LRNVLTSNPSDPDSYANKSKDDR------------------LIKLNH  440 (750)
Q Consensus       391 ~ly~~AlkA~gld~~~~sk~~------------irkVLesd~~Dp~S~aN~L~D~R------------------y~~lA~  440 (750)
                      .-|.|.+.++|+++.+.-.++            +-+..+ .+.||.-=..+..+++                  |..||-
T Consensus       168 ~aYs~lleslg~d~~Eif~a~~~ipsi~~K~df~~~~~~-~l~d~~f~~~t~e~~~~f~~~Li~F~~i~EGifFysgFa~  246 (391)
T PRK07209        168 HAYQYIVESLGLDEGEIFNMYHEVPSIRAKDEFLLPFTR-ALTDPNFKTGTPEADQKLLRNLIAFYCIMEGIFFYVGFTQ  246 (391)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999981189889999999527889989999999999-8625454568802599999999999999879999999999


Q ss_pred             HCCCCCCCCCCC
Q ss_conf             448776785665
Q gi|254781009|r  441 AFNFNADGSIGP  452 (750)
Q Consensus       441 AFnF~~dG~~~~  452 (750)
                      .++|.--|..++
T Consensus       247 il~l~RrgkM~G  258 (391)
T PRK07209        247 ILSLGRQNKMTG  258 (391)
T ss_pred             HHHHHHHCCCCC
T ss_conf             999875145757


No 7  
>KOG1961 consensus
Probab=48.44  E-value=17  Score=15.39  Aligned_cols=149  Identities=17%  Similarity=0.134  Sum_probs=74.3

Q ss_pred             CHHHHHHCCCHHHHHHHHHCCCC------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf             01354201431578888744877------678566510111133445568899987776411222235642111024566
Q gi|254781009|r  423 PDSYANKSKDDRLIKLNHAFNFN------ADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRI  496 (750)
Q Consensus       423 p~S~aN~L~D~Ry~~lA~AFnF~------~dG~~~~~~~~q~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (750)
                      =++|-|+..-.=|-.|-..|.+.      ++-+....   --.+..-.+..+|......+..-..-..+...    -..-
T Consensus       436 ld~y~n~v~~~LWPRFq~V~d~h~eSlR~~di~~~~~---~~d~rPHyitrRyAEf~ss~~~l~v~~~~~~~----~~~l  508 (683)
T KOG1961         436 LDSYWNSVLIFLWPRFQLVMDMHCESLRKADITTLWE---KLDTRPHYITRRYAEFLSSFLMLNVTYGNEQD----VERL  508 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH----HHHH
T ss_conf             1378887899998999999999988888467010346---56789629999999999999999986155220----6899


Q ss_pred             HHHHHHHHHHHHHHCCC----CCCHHHHH-CCHHHHHHHH-HHCCCCH----------HHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             78889899999974156----67899994-1489999998-7548885----------4412899999962278885577
Q gi|254781009|r  497 NLEINSEVDYYTLNINT----IHSFEELL-ANKRILNFLL-ESKGIDS----------QKVREDFLCEIFKSDLKDPKSF  560 (750)
Q Consensus       497 ~~~~~~e~~yf~~~i~~----i~s~~dll-~D~rl~~~aL-~AfGL~~----------~~~~~~~i~kvL~sd~~d~~sl  560 (750)
                      -...+.+++-|..++.+    -+...-|| +++.+.--+| .+-+=..          ......|+.++|..+-.|--.|
T Consensus       509 l~~l~~~ve~fl~rmak~~~~~K~q~vFLiNNYdlil~vL~e~~~~~~k~~~~f~e~ln~~~~~fveell~~hf~~~i~f  588 (683)
T KOG1961         509 LERLQMEVESFLLRMAKLFPTRKQQLVFLINNYDLILGVLMEAEPDLSKEQEHFQELLNSNTSNFVEELLVPHFGDLIKF  588 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             99999999999999998637755642665434899999998636454657899999987338999998615776726899


Q ss_pred             HHHCC--CHHHHHHHHHCCC
Q ss_conf             75216--4789999976187
Q gi|254781009|r  561 ANTYK--DNRYKEIISSFNF  578 (750)
Q Consensus       561 aN~l~--D~ry~~la~aF~F  578 (750)
                      ++--.  +.|+..++++|+-
T Consensus       589 vk~~e~~~~~~~~LV~~F~~  608 (683)
T KOG1961         589 VKERETAENRVETLVADFGS  608 (683)
T ss_pred             HHHHHCCHHHHHHHHHHHHH
T ss_conf             99885210668899998722


No 8  
>KOG3543 consensus
Probab=45.52  E-value=19  Score=15.12  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=15.5

Q ss_pred             CCCCHHHHHCCHHHHHHHHHHCCC
Q ss_conf             458999972438999999997398
Q gi|254781009|r  150 KINSVDQLFKDRRLLDYVLQSFSI  173 (750)
Q Consensus       150 ~ItsvddLL~D~~L~~vv~tAfGL  173 (750)
                      .--+.+-+|+--+|..+.+.-+|+
T Consensus       203 ~a~sad~vl~keqlyd~fq~ilgv  226 (1218)
T KOG3543         203 NAMSADAVLGKEQLYDVFQQILGV  226 (1218)
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf             012156551689999999998545


No 9  
>COG4342 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.32  E-value=20  Score=14.91  Aligned_cols=47  Identities=19%  Similarity=0.237  Sum_probs=22.3

Q ss_pred             HHCCCCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             741566789999414899999987548885441289999996227888
Q gi|254781009|r  509 LNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKD  556 (750)
Q Consensus       509 ~~i~~i~s~~dll~D~rl~~~aL~AfGL~~~~~~~~~i~kvL~sd~~d  556 (750)
                      --||++..-+-+.+-.|++...|..+|+.++... ..++|++......
T Consensus        69 r~ig~~~~kdKy~kA~R~f~~fl~~rgiise~~A-e~lrk~lk~k~~~  115 (291)
T COG4342          69 RPIGSVREKDKYQKAYRLFIKFLTSRGIISEEFA-EKLRKPLKVKKSN  115 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHCCCCCC
T ss_conf             7644311005799999999999987041339999-9999986457678


No 10 
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=42.66  E-value=21  Score=14.85  Aligned_cols=25  Identities=12%  Similarity=-0.053  Sum_probs=17.2

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999998098822546999999963
Q gi|254781009|r  392 TLQFALDAYNLNMQDLDRDQLRNVLT  417 (750)
Q Consensus       392 ly~~AlkA~gld~~~~sk~~irkVLe  417 (750)
                      .|.|+++++|=++. -++.||++++.
T Consensus       165 Awg~a~~~~gg~e~-~a~~fv~~l~~  189 (338)
T PRK10852        165 AWGAADKADGGDKA-KTEQFMTQFLK  189 (338)
T ss_pred             HHHHHHHHCCCCHH-HHHHHHHHHHH
T ss_conf             99999986499989-99999999983


No 11 
>COG3814 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.40  E-value=13  Score=16.03  Aligned_cols=17  Identities=12%  Similarity=0.155  Sum_probs=9.0

Q ss_pred             HHHHCCHHHHHHHHHHC
Q ss_conf             99724389999999973
Q gi|254781009|r  155 DQLFKDRRLLDYVLQSF  171 (750)
Q Consensus       155 ddLL~D~~L~~vv~tAf  171 (750)
                      |++|+...||.||...+
T Consensus         8 Y~~laqealrgvvkkvL   24 (157)
T COG3814           8 YDILAQEALRGVVKKVL   24 (157)
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999


No 12 
>pfam08566 Pam17 Mitochondrial import protein Pam17. The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins.
Probab=41.26  E-value=5.8  Score=18.16  Aligned_cols=26  Identities=27%  Similarity=0.562  Sum_probs=20.5

Q ss_pred             HHHHHHHCCCCCCHHHHHCCHHHHHH
Q ss_conf             99999741566789999414899999
Q gi|254781009|r  504 VDYYTLNINTIHSFEELLANKRILNF  529 (750)
Q Consensus       504 ~~yf~~~i~~i~s~~dll~D~rl~~~  529 (750)
                      -+||-|+|+++..=-+-|.|.+.++=
T Consensus       143 PDYYGEKI~Sl~~YRQWLRDq~a~~r  168 (174)
T pfam08566       143 PDYYGEKIGSLAGYRQWLRDQRAFNR  168 (174)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             97443302228999999999899998


No 13 
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=34.44  E-value=28  Score=14.07  Aligned_cols=58  Identities=10%  Similarity=-0.047  Sum_probs=47.9

Q ss_pred             CCHHHHCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             8676631999999999996219786499899999999987531101111124567866
Q gi|254781009|r  656 LSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPN  713 (750)
Q Consensus       656 LP~~~a~~DiDkQa~li~~k~Di~dl~DP~kv~kli~RF~Am~~~~yD~~n~~~~s~~  713 (750)
                      +-+.+++.-+++|+++.+.+=.+=.+-.|+.-.+|-.+|--==.+-||+.+-+-+||-
T Consensus        98 q~ekm~~~~~~r~Vem~~~~nqmy~lLTPEQK~~~~~~~qqRm~q~~~~~~~~~~~~~  155 (166)
T PRK10363         98 QAEKMAQEQVARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVAQWQKSSSL  155 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             9999999999999999999989998279999999999999999999999862547710


No 14 
>pfam06599 DUF1139 Protein of unknown function (DUF1139). This family consists of several hypothetical Fijivirus proteins of unknown function.
Probab=33.29  E-value=28  Score=14.02  Aligned_cols=26  Identities=8%  Similarity=0.172  Sum_probs=16.7

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99999998098822546999999963
Q gi|254781009|r  392 TLQFALDAYNLNMQDLDRDQLRNVLT  417 (750)
Q Consensus       392 ly~~AlkA~gld~~~~sk~~irkVLe  417 (750)
                      -|...||+.--..|.+.|..+|++|.
T Consensus       283 WY~lfmrtlvfksm~~TK~lik~iLn  308 (309)
T pfam06599       283 WYTLFMRTLIFRSMKYTKRLIKNLLN  308 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999999999999746


No 15 
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=33.22  E-value=29  Score=13.98  Aligned_cols=48  Identities=19%  Similarity=0.168  Sum_probs=34.2

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCHHH---------HHHHHHHHHHHCCCCCCHHHHHHCCCHH
Q ss_conf             122210047999999980988225---------4699999996338887013542014315
Q gi|254781009|r  383 PNSAEEPIITLQFALDAYNLNMQD---------LDRDQLRNVLTSNPSDPDSYANKSKDDR  434 (750)
Q Consensus       383 ~~~~~~~~~ly~~AlkA~gld~~~---------~sk~~irkVLesd~~Dp~S~aN~L~D~R  434 (750)
                      .-.|.++  ||+.+++.+|.--..         .-.+.+||.||-|  -.+||+|++-|+.
T Consensus       430 LhGMGe~--ly~~~~~~~~~~~RiYAPVG~h~dLLpYLVRRLLENg--ANsSFv~~~~d~~  486 (1026)
T PRK11904        430 LHGMGEA--LYDALLDAPGIPCRIYAPVGSHKDLLPYLVRRLLENG--ANSSFVHRLVDPD  486 (1026)
T ss_pred             ECCCCHH--HHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHCCC
T ss_conf             2157899--9999985379843897767867888999999987258--8488997760489


No 16 
>pfam10875 DUF2670 Protein of unknown function (DUF2670). This bacterial family of proteins has no known function.
Probab=29.54  E-value=32  Score=13.68  Aligned_cols=32  Identities=19%  Similarity=0.256  Sum_probs=24.2

Q ss_pred             CCCHHHHHHHCCHHHHHHHHHHHCCCHHHHCCC
Q ss_conf             550029987277899999999704867663199
Q gi|254781009|r  632 PNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP  664 (750)
Q Consensus       632 ~~Its~y~ILgD~aL~~V~~TAlgLP~~~a~~D  664 (750)
                      +-|+.||=|++-..|-..+-|++||-. +|.+|
T Consensus        20 siitkwyliiavaslitlyytvlglkk-igfid   51 (139)
T pfam10875        20 SIITKWYLIIAVASLITLYYTVLGLKK-IGFID   51 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHH
T ss_conf             999999999999999999999970466-25145


No 17 
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=28.20  E-value=33  Score=13.60  Aligned_cols=27  Identities=11%  Similarity=0.130  Sum_probs=21.0

Q ss_pred             CHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH
Q ss_conf             9999999999621978649989999999998753
Q gi|254781009|r  664 PERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM  697 (750)
Q Consensus       664 DiDkQa~li~~k~Di~dl~DP~kv~kli~RF~Am  697 (750)
                      +|++|.+-+++|++       .+.+.+.++|++|
T Consensus       418 ~l~~~i~~l~~rl~-------~~e~~~~~QFtam  444 (463)
T PRK08032        418 KLTKQYNAVSDSID-------ATVARYKAQFTQL  444 (463)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_conf             99999999999999-------9999999999999


No 18 
>pfam01216 Calsequestrin Calsequestrin.
Probab=27.78  E-value=36  Score=13.39  Aligned_cols=52  Identities=15%  Similarity=0.206  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHCC---CHHHHCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHH
Q ss_conf             999999997048---6766319999999999962197864998999999999875
Q gi|254781009|r  645 KLFKVVSKKLKL---SPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKA  696 (750)
Q Consensus       645 aL~~V~~TAlgL---P~~~a~~DiDkQa~li~~k~Di~dl~DP~kv~kli~RF~A  696 (750)
                      -|..+++-++||   |.+++..+|..-.....+--+=+++-.++.+++||+++..
T Consensus       292 ~i~~y~~~~~~i~L~~~qi~vv~v~d~~~~~~~~~~~~d~~tae~l~~wiedvL~  346 (350)
T pfam01216       292 LLVPYWEKTFKIDLSKPQIGVVNVTDADSVWMEMDDEEDLPTAEELEDWIEDVLE  346 (350)
T ss_pred             HHHHHHHHHCCCCCCCCCCCEEEEECCHHCCCCCCCHHCCCCHHHHHHHHHHHHC
T ss_conf             6889999853778775547756422322100358870004789999999999866


No 19 
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284   This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis .   Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=27.60  E-value=37  Score=13.37  Aligned_cols=142  Identities=18%  Similarity=0.234  Sum_probs=77.7

Q ss_pred             CCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             66789999414899999987548885441289999996227888557775216478999997618776576556774322
Q gi|254781009|r  513 TIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKV  592 (750)
Q Consensus       513 ~i~s~~dll~D~rl~~~aL~AfGL~~~~~~~~~i~kvL~sd~~d~~slaN~l~D~ry~~la~aF~F~~~G~~~~~~~~~~  592 (750)
                      +|+..|+.   ..+++-+...|| =|=.++.|-|-         .|.|.-|.+|+.|-+.-+.            ++...
T Consensus        56 dvs~~~~~---~~~~~~~~~~~G-iDiLVNNAGIT---------rD~Ll~RMk~edWd~Vi~~------------NL~g~  110 (238)
T TIGR01830        56 DVSDREDV---KALVEEAEEELG-IDILVNNAGIT---------RDNLLMRMKEEDWDAVINV------------NLKGV  110 (238)
T ss_pred             CCCCHHHH---HHHHHHHHHHHC-CEEEEECCCCC---------CCCHHCCCCHHHHHHHHHH------------HHHHH
T ss_conf             38888999---999999999829-90899787413---------4301004885568999986------------12668


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--CCCCHHHHHHHCCHHHHHHHHHHH---CCCHHHH----C-
Q ss_conf             45667999999999877888730038546999999863--255002998727789999999970---4867663----1-
Q gi|254781009|r  593 QDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRT--IPNIRNHYEILGDSKLFKVVSKKL---KLSPYFA----V-  662 (750)
Q Consensus       593 q~~~~~~~i~d~Y~~qs~E~~~Ge~n~gvRLALyF~R~--a~~Its~y~ILgD~aL~~V~~TAl---gLP~~~a----~-  662 (750)
                      -      ..+..=+++...                +|.  +=+|+|.=.++|++==....=+-=   ||-.+++    . 
T Consensus       111 F------~~t~~v~~~M~K----------------~R~GrIINisSVVG~~GN~GQaNYaASKAG~IGftKSlAkElasR  168 (238)
T TIGR01830       111 F------NLTQAVLRPMIK----------------QRSGRIINISSVVGLMGNAGQANYAASKAGVIGFTKSLAKELASR  168 (238)
T ss_pred             H------HHHHHHHHHHHH----------------HCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             7------888998898875----------------067434861002000068742678888755899999999860368


Q ss_pred             -----------CC-------HHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             -----------99-------99999999962197864998999999999875311011
Q gi|254781009|r  663 -----------LP-------ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSI  702 (750)
Q Consensus       663 -----------~D-------iDkQa~li~~k~Di~dl~DP~kv~kli~RF~Am~~~~y  702 (750)
                                 ++       -|+|.+-+.+.+=|.-|-.||.|-..+ .|+|=|+++|
T Consensus       169 nItVNaVAPGFI~TdMT~~L~e~~~~~~l~~IPLgR~G~pEeVA~~v-~FLASd~AsY  225 (238)
T TIGR01830       169 NITVNAVAPGFIETDMTDKLSEKVKKAMLSQIPLGRFGTPEEVANAV-AFLASDEASY  225 (238)
T ss_pred             CCEEEEECCCCCCCCCCHHCCHHHHHHHHHCCCCCCCCCHHHHHHHH-HHHCCCCCCC
T ss_conf             70588874899897000216988999998527723267765699999-9732512474


No 20 
>pfam07147 PDCD9 Mitochondrial 28S ribosomal protein S30 (PDCD9). This family consists of several eukaryotic mitochondrial 28S ribosomal protein S30 (or programmed cell death protein 9 PDCD9) sequences. The exact function of this family is unknown although it is known to be a component of the mitochondrial ribosome and a component in cellular apoptotic signaling pathways.
Probab=27.31  E-value=22  Score=14.65  Aligned_cols=74  Identities=20%  Similarity=0.162  Sum_probs=48.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHCCH----HHHHHHHHHCCCHHHH-------HH
Q ss_conf             752021001254147999887608656889999998507758898996668----9999999975972441-------05
Q gi|254781009|r    2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDK----RLFSYALKAFGLSDMS-------HA   70 (750)
Q Consensus         2 ~~~~~~~~~~rd~~~~~~~~~a~~p~V~r~~~yy~~~I~~v~svDdll~D~----rl~~yamkA~GLedm~-------~a   70 (750)
                      +|.|--+++++|+..+.    ++    .|..+-+-+.|.++.||+|=|.=.    +-.-|.-|+|++.+.+       ..
T Consensus        31 ~p~YpPi~~s~~~~~ka----~k----~r~~~ew~~~i~~~ptVeEKl~~~~~~~~p~Y~~yK~~~~~p~~~~~nal~~~  102 (423)
T pfam07147        31 SPRYPPIVYSRTFKSKA----AK----RRRAEEFHEMVHAAPTVEEKIRLITPVQRPKYVVYKANIIPPQTFALNALRWY  102 (423)
T ss_pred             CCCCCCCCCCCCCCCHH----HH----HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEECCCCHHH
T ss_conf             87799853456778266----65----43589999998548989998876532166412136521038862344531465


Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9999999826899
Q gi|254781009|r   71 EKFIKKILESDLS   83 (750)
Q Consensus        71 ka~~kKVLesd~~   83 (750)
                      ..+-|-||++++-
T Consensus       103 Q~~TkTv~~~gLP  115 (423)
T pfam07147       103 QYLTKTVFVSGLP  115 (423)
T ss_pred             HHHHEEEECCCCC
T ss_conf             6410013204688


No 21 
>PRK11779 sbcB exonuclease I; Provisional
Probab=25.02  E-value=34  Score=13.53  Aligned_cols=36  Identities=14%  Similarity=0.262  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf             412899999962278885577752164789999976
Q gi|254781009|r  540 KVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISS  575 (750)
Q Consensus       540 ~~~~~~i~kvL~sd~~d~~slaN~l~D~ry~~la~a  575 (750)
                      ...+..|.++-...+.+...+.+.+.|+|+++|.--
T Consensus       373 ~~Dk~lm~~fh~a~~~el~~~~~~F~D~RL~eLlfR  408 (477)
T PRK11779        373 DADRRLMKIIRETEPENLAALDLTFDDPRLEELLFR  408 (477)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             899999999981999999840457878218999999


No 22 
>KOG0917 consensus
Probab=24.57  E-value=42  Score=13.03  Aligned_cols=40  Identities=8%  Similarity=0.067  Sum_probs=31.3

Q ss_pred             CCCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             5667899994148999999875488854412899999962
Q gi|254781009|r  512 NTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFK  551 (750)
Q Consensus       512 ~~i~s~~dll~D~rl~~~aL~AfGL~~~~~~~~~i~kvL~  551 (750)
                      |.+-+.|+|-.-+++-+||+.|...|+-.-...-++|.|+
T Consensus       292 g~qptpE~faea~K~~kyA~sAl~yedVstavenL~KaL~  331 (338)
T KOG0917         292 GVQPTPEDFAEAQKYCKYAGSALQYEDVSTAVENLQKALK  331 (338)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             8756879999999999876311016889999999999999


No 23 
>TIGR02793 nikR nickel-responsive transcriptional regulator NikR; InterPro: IPR014160   The members of this entry from Escherichia coli, Pseudomonas putida, and Brucella melitensis, are found associated with a nickel ABC transporter operon that acts to import nickel for use as a cofactor in urease or hydrogenase. These proteins, with characterised nickel-binding and DNA-binding domains, act as nickel-responsive transcriptional regulators. In the larger family of full-length homologues, most others both lack proximity to the nickel ABC transporter operon and form a separate clade. Several of the homologues not in this entry have been shown to bind nickel, copper, or both, and to regulate genes in response to nickel..
Probab=24.06  E-value=29  Score=13.99  Aligned_cols=26  Identities=15%  Similarity=0.144  Sum_probs=14.7

Q ss_pred             CCCCC---CCCHHHHHHHHHHHCHHHHHH
Q ss_conf             21001---254147999887608656889
Q gi|254781009|r    6 VAPFP---SKDIQSKLFSTVSKDPIVSCE   31 (750)
Q Consensus         6 ~~~~~---~rd~~~~~~~~~a~~p~V~r~   31 (750)
                      ++|+|   +||+++||.++.=..=+++|.
T Consensus        56 lsY~YdHs~RdL~~rL~~t~H~HHdLs~a   84 (130)
T TIGR02793        56 LSYTYDHSKRDLPRRLTQTLHHHHDLSRA   84 (130)
T ss_pred             EEEEECCCCCHHHHHHHHCCCCCCHHHHH
T ss_conf             98731175311345551014320011142


No 24 
>pfam07304 SRA1 Steroid receptor RNA activator (SRA1). This family consists of several hypothetical mammalian steroid receptor RNA activator proteins. SRA-RNAs likely to encode stable proteins are widely expressed in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA and is classified as belonging to the growing family of functional non-coding RNAs.
Probab=23.70  E-value=43  Score=12.93  Aligned_cols=45  Identities=9%  Similarity=0.157  Sum_probs=33.3

Q ss_pred             CCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             9999999999962197864998999999999875311011111245
Q gi|254781009|r  663 LPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKAL  708 (750)
Q Consensus       663 ~DiDkQa~li~~k~Di~dl~DP~kv~kli~RF~Am~~~~yD~~n~~  708 (750)
                      -|++|+..++.+++.=.+|..| .++++..--.+|....||.++..
T Consensus        68 ~D~~kRL~iL~d~ln~~~Ls~p-v~~kl~~La~aL~~~dy~~A~~I  112 (157)
T pfam07304        68 KDISRRLKLLEDMWMGGKLSKP-VKKRMIKLVKELDDGQWDAADNI  112 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             9999999999999846886679-99999999999983688899999


No 25 
>PRK07737 fliD flagellar capping protein; Validated
Probab=21.82  E-value=44  Score=12.87  Aligned_cols=27  Identities=15%  Similarity=0.257  Sum_probs=18.3

Q ss_pred             CHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH
Q ss_conf             9999999999621978649989999999998753
Q gi|254781009|r  664 PERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM  697 (750)
Q Consensus       664 DiDkQa~li~~k~Di~dl~DP~kv~kli~RF~Am  697 (750)
                      ++++|.+-+++|++       .+.+.+.++|++|
T Consensus       453 ~~~~~i~~l~~rl~-------~~e~rl~~QFtam  479 (502)
T PRK07737        453 SIETRISRMQDRLK-------QIEDRYYKKFSAM  479 (502)
T ss_pred             HHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_conf             99999999999999-------9999999999999


Done!