Query gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 750 No_of_seqs 168 out of 175 Neff 5.1 Searched_HMMs 33803 Date Wed Jun 1 20:45:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781009.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2o8s_A AGR_C_984P; all alpha- 100.0 1.5E-42 0 272.5 5.5 111 615-734 66-176 (199) 2 >2o8s_A AGR_C_984P; all alpha- 100.0 6.2E-39 1.8E-43 250.9 10.9 121 16-136 1-123 (124) 3 >2o8s_A AGR_C_984P; all alpha- 100.0 1.4E-34 4E-39 224.9 10.1 121 491-617 4-124 (124) 4 >2o8s_A AGR_C_984P; all alpha- 98.7 9.2E-09 2.7E-13 70.4 2.8 71 140-212 74-151 (199) 5 >1msw_D DNA-directed RNA polym 70.9 2.6 7.8E-05 19.8 2.2 66 632-697 12-80 (98) 6 >2o4j_A Vitamin D3 receptor; n 67.8 6.7 0.0002 17.4 5.3 58 638-696 64-144 (241) 7 >1xvp_B Orphan nuclear recepto 50.8 13 0.00039 15.6 5.1 59 638-697 59-143 (200) 8 >3cqv_A Nuclear receptor subfa 40.3 19 0.00057 14.6 5.7 59 638-697 25-108 (152) 9 >1qht_A Protein (DNA polymeras 36.6 22 0.00066 14.3 2.1 60 11-70 7-70 (87) 10 >2ii2_A Alpha-11 giardin; heli 28.5 30 0.0009 13.5 2.4 39 379-421 27-65 (154) 11 >2nys_A AGR_C_3712P; SSPB, str 28.0 28 0.00084 13.6 1.5 17 155-171 8-24 (176) 12 >2qas_A SSPB, hypothetical pro 26.6 31 0.00092 13.4 1.5 16 155-170 16-31 (157) 13 >2ctp_A DNAJ homolog subfamily 26.1 34 0.00099 13.2 2.1 51 597-652 20-70 (78) 14 >2hc4_A Vitamin D receptor; al 25.4 35 0.001 13.1 5.4 63 634-697 103-188 (251) 15 >2dal_A Protein KIAA0794; FAS 22.9 28 0.00082 13.7 0.7 25 682-706 10-34 (62) 16 >1wjz_A 1700030A21RIK protein; 22.1 40 0.0012 12.7 1.9 55 596-652 28-86 (94) 17 >2ej7_A HCG3 gene; HCG3 protei 20.4 44 0.0013 12.5 2.5 53 597-652 22-74 (82) 18 >1pjr_A PCRA; DNA repair, DNA 20.3 44 0.0013 12.5 2.8 39 655-693 1-43 (86) No 1 >>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Agrobacterium tumefaciens str} (A:1-68,A:193-323) Probab=100.00 E-value=1.5e-42 Score=272.53 Aligned_cols=111 Identities=25% Similarity=0.406 Sum_probs=102.9 Q ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHH Q ss_conf 00385469999998632550029987277899999999704867663199999999999621978649989999999998 Q gi|254781009|r 615 EEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAA 694 (750) Q Consensus 615 Ge~n~gvRLALyF~R~a~~Its~y~ILgD~aL~~V~~TAlgLP~~~a~~DiDkQa~li~~k~Di~dl~DP~kv~kli~RF 694 (750) .+-|+||||||||+|++|+|++||+||||++|++||+||||||++|+++|||||+++|++|+||+||+||+||+|||+|| T Consensus 66 ~~~NegvRLALYFqR~ap~I~swY~ILgD~aL~~VfeTALGLPssfa~lDIDkQa~li~~k~DlsdlsDP~kveklI~RF 145 (199) T 2o8s_A 66 QDINNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALIEKSINIKDLQDPEKVGKLLERF 145 (199) T ss_dssp HTHCHHHHHHHHHHHHSTTCCSHHHHHTSHHHHHHHHTTTTC-----CCCCTTHHHHHHHSSCTTTTTCTTHHHHHHHHH T ss_pred HHHCHHHHHHHHHHHHCHHHCCHHHHHCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHH T ss_conf 01788899999999743323229999677899999999819986661388899999999633798648979999999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEECC Q ss_conf 7531101111124567866664158884167644200000 Q gi|254781009|r 695 KAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQNNVSLQL 734 (750) Q Consensus 695 ~Am~~~~yD~~n~~~~s~~~~~sp~~~lf~~~~~~~~~~~ 734 (750) +|| ||++|+ +++++|+..++..++.+|+..| T Consensus 146 lA~----~di~N~-----sasssalalL~~sSs~sIS~dL 176 (199) T 2o8s_A 146 TIX----WEXQNP-----STTYDPLAVFGSSSGYGISPDL 176 (199) T ss_dssp HHH----HHHHCC--------------------------- T ss_pred HHH----HHHHCC-----CCCCCHHHHHCCCCCCCCCHHH T ss_conf 999----998665-----6788688887068754448899 No 2 >>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Agrobacterium tumefaciens str} (A:69-192) Probab=100.00 E-value=6.2e-39 Score=250.90 Aligned_cols=121 Identities=36% Similarity=0.613 Sum_probs=113.4 Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCH Q ss_conf 79998876086568899999985077588989966689999999975972441059999999826899833013320668 Q gi|254781009|r 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSL 95 (750) Q Consensus 16 ~~~~~~~a~~p~V~r~~~yy~~~I~~v~svDdll~D~rl~~yamkA~GLedm~~aka~~kKVLesd~~D~~s~aNkL~D~ 95 (750) ++.+++++++|.|+|+++||++|||+|+||||||+|+|||+|+|+||||++|+++|+||||||+||++||+||||+|+|+ T Consensus 1 ~kq~~~~~~~~~~~~e~~yy~~~I~~Itsvddll~d~rL~~~al~AfGL~~~~~~~~~lkkvL~sd~~Dp~S~aN~l~d~ 80 (124) T 2o8s_A 1 GKSLERVSKQPDVARETEYYREKIGSVKSIDDFXADTRLYNYALKAHGLEDXAYAKAFIRKVLTEGASDKNAFANKLSDN 80 (124) T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHGGGCCSHHHHHTCHHHHHHHHHHTTGGGSTTCHHHHHHHHHHCSSSTTCGGGGSSST T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCH T ss_conf 88999885374777899999997278778999834789999999976998442519999999716998747899862788 Q ss_pred HHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHH-HHHHHHHHCC Q ss_conf 99999998187877-76442036788998877-8767753012 Q gi|254781009|r 96 KYQYFARSYDFSPP-PKVIQSDIQHKTIIQDY-KQSHQHKEEV 136 (750) Q Consensus 96 Ry~~fA~af~F~~~-~~~~~~~~~~~~~i~~y-~~~~~~~~~~ 136 (750) ||++||.+|||++. +...|..++.+.++++| .++++...++ T Consensus 81 ry~~lA~aFnF~~~g~~~~~~~~~~~~~~~~Y~~q~~E~~~Ge 123 (124) T 2o8s_A 81 RYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQTLEQEAGD 123 (124) T ss_dssp HHHHHHHHTCHHHHGGGTTSSTTTTHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8999999829999887655767899999999999999998468 No 3 >>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Agrobacterium tumefaciens str} (A:69-192) Probab=100.00 E-value=1.4e-34 Score=224.93 Aligned_cols=121 Identities=21% Similarity=0.448 Sum_probs=111.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH Q ss_conf 02456678889899999974156678999941489999998754888544128999999622788855777521647899 Q gi|254781009|r 491 STQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYK 570 (750) Q Consensus 491 ~~~~~~~~~~~~e~~yf~~~i~~i~s~~dll~D~rl~~~aL~AfGL~~~~~~~~~i~kvL~sd~~d~~slaN~l~D~ry~ 570 (750) .+..+..+.++++++||+++|++|+||+|||+|+||++|+|+||||+++++.+++|||||+||++||+||+|+++|+||+ T Consensus 4 ~~~~~~~~~~~~e~~yy~~~I~~Itsvddll~d~rL~~~al~AfGL~~~~~~~~~lkkvL~sd~~Dp~S~aN~l~d~ry~ 83 (124) T 2o8s_A 4 LERVSKQPDVARETEYYREKIGSVKSIDDFXADTRLYNYALKAHGLEDXAYAKAFIRKVLTEGASDKNAFANKLSDNRYA 83 (124) T ss_dssp HHHHTTSHHHHHHHHHHHHHGGGCCSHHHHHTCHHHHHHHHHHTTGGGSTTCHHHHHHHHHHCSSSTTCGGGGSSSTHHH T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCHHHH T ss_conf 99885374777899999997278778999834789999999976998442519999999716998747899862788899 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99976187765765567743224566799999999987788873003 Q gi|254781009|r 571 EIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEK 617 (750) Q Consensus 571 ~la~aF~F~~~G~~~~~~~~~~q~~~~~~~i~d~Y~~qs~E~~~Ge~ 617 (750) +|+.+|||+++|..... ..+++.+|+++|++|+||.++||. T Consensus 84 ~lA~aFnF~~~g~~~~~------~~~~~~~~~~~Y~~q~~E~~~Ge~ 124 (124) T 2o8s_A 84 ELAKSLDFAGLGAAATA------TEAAKSGVIGNYARQTLEQEAGDD 124 (124) T ss_dssp HHHHHTCHHHHGGGTTS------STTTTHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHCCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99998299998876557------678999999999999999984688 No 4 >>2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Agrobacterium tumefaciens str} (A:1-68,A:193-323) Probab=98.67 E-value=9.2e-09 Score=70.42 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=40.3 Q ss_pred HHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCHHHCCHHHHHHHH-------CCCCCCCHHHHHCCCHHHHHHHHHH Q ss_conf 458898511345899997243899999999739872120389998874-------1887770023310350569999985 Q gi|254781009|r 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVL-------TLGLANPKKYFIESRDNRFRAMAEN 212 (750) Q Consensus 140 ~~~Yf~~~~~~ItsvddLL~D~~L~~vv~tAfGL~~~~~s~~~lk~vL-------tsD~sDp~S~~n~~~~~~y~~lAaa 212 (750) -++||+|++++|+++|+||+|+.|++||+||||||.+...-+.-||+- -+|+.||.-+..- -.||..+-.. T Consensus 74 LALYFqR~ap~I~swY~ILgD~aL~~VfeTALGLPssfa~lDIDkQa~li~~k~DlsdlsDP~kvekl--I~RFlA~~di 151 (199) T 2o8s_A 74 LALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALIEKSINIKDLQDPEKVGKL--LERFTIXWEX 151 (199) T ss_dssp HHHHHHHHSTTCCSHHHHHTSHHHHHHHHTTTTC-----CCCCTTHHHHHHHSSCTTTTTCTTHHHHH--HHHHHHHHHH T ss_pred HHHHHHHHCHHHCCHHHHHCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCHHHCCCHHHHHHH--HHHHHHHHHH T ss_conf 99999974332322999967789999999981998666138889999999963379864897999999--9999999998 No 5 >>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} (D:1-66,D:248-279) Probab=70.91 E-value=2.6 Score=19.81 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=53.2 Q ss_pred CCCHH---HHHHHCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH Q ss_conf 55002---9987277899999999704867663199999999999621978649989999999998753 Q gi|254781009|r 632 PNIRN---HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697 (750) Q Consensus 632 ~~Its---~y~ILgD~aL~~V~~TAlgLP~~~a~~DiDkQa~li~~k~Di~dl~DP~kv~kli~RF~Am 697 (750) ++|.+ .|++|+|-==....+.-|-|--+.-.+--.+=.+++++.++-..|.||+.|+++-.|--++ T Consensus 12 Sdi~~a~~pfn~LadhYG~~LA~eQL~LEHEay~~GE~RF~K~~ERQ~k~gE~~dpe~v~~l~~Ra~aL 80 (98) T 1msw_D 12 SDIELAAIPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADPEYAEAIATRAGAL 80 (98) T ss_dssp GGGSCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 566663178035666656899999999999999999999999999999626665789999999766677 No 6 >>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} (A:1-107,A:159-292) Probab=67.80 E-value=6.7 Score=17.41 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=28.7 Q ss_pred HHHHCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHC-----------------------CHHHCCCHHHHHHHHHHH Q ss_conf 987277899999999704867663199999999999621-----------------------978649989999999998 Q gi|254781009|r 638 YEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI-----------------------KINDFKDSKKVEDFLYAA 694 (750) Q Consensus 638 y~ILgD~aL~~V~~TAlgLP~~~a~~DiDkQa~li~~k~-----------------------Di~dl~DP~kv~kli~RF 694 (750) +.=++++.+..||+=|=+|| .|..+++|-|.-+++... |...+.++.+++++-.++ T Consensus 64 l~el~~~~i~~iVefAK~lP-gF~~L~~~DQi~LLk~~~~Ell~lld~~E~~lLkAiiL~~~d~~gL~~~~~v~~lq~~~ 142 (241) T 2o4j_A 64 LADLVSYSIQKVIGFAKMIP-GFRDLTSDDQIVLLKSSAIEVIMLLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRL 142 (241) T ss_dssp HHHHHHHHHHHHHHHHHHST-TGGGSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH T ss_conf 99999999999999998396-71658989999999999999999999899999999999467877887899999999999 Q ss_pred HH Q ss_conf 75 Q gi|254781009|r 695 KA 696 (750) Q Consensus 695 ~A 696 (750) .. T Consensus 143 ~~ 144 (241) T 2o4j_A 143 SN 144 (241) T ss_dssp HH T ss_pred HH T ss_conf 99 No 7 >>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} (B:1-105,B:152-246) Probab=50.81 E-value=13 Score=15.62 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=50.6 Q ss_pred HHHHCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHC--------------------------CHHHCCCHHHHHHHH Q ss_conf 987277899999999704867663199999999999621--------------------------978649989999999 Q gi|254781009|r 638 YEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI--------------------------KINDFKDSKKVEDFL 691 (750) Q Consensus 638 y~ILgD~aL~~V~~TAlgLP~~~a~~DiDkQa~li~~k~--------------------------Di~dl~DP~kv~kli 691 (750) ..=++++.+..||+=|=+|| .|..+.+|-|+.+++.-. |...+.++.+|+++- T Consensus 59 ~~~l~~~~i~~iV~fAK~lP-~F~~L~~~DQi~LLk~~~~Ell~l~~~ld~~E~~lLkAiiL~~~d~~gL~~~~~i~~lq 137 (200) T 1xvp_B 59 FADINTFMVLQVIKFTKDLP-VFRSLPIEDQISLLKGAAVEICHIVLNLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQ 137 (200) T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHSCHHHHHHHHHHHHHHHHHHHHGCCHHHHHHHHHHHHSCSSSTTCSCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCC-CHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH T ss_conf 99999999999999999691-65009999999999999999999999999999998875554057989987689999999 Q ss_pred HHHHHH Q ss_conf 998753 Q gi|254781009|r 692 YAAKAM 697 (750) Q Consensus 692 ~RF~Am 697 (750) +++..- T Consensus 138 ~~~~~a 143 (200) T 1xvp_B 138 EEMALT 143 (200) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 8 >>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A (A:1-71,A:119-199) Probab=40.29 E-value=19 Score=14.63 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=48.8 Q ss_pred HHHHCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHC-------------------------CHHHCCCHHHHHHHHH Q ss_conf 987277899999999704867663199999999999621-------------------------9786499899999999 Q gi|254781009|r 638 YEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI-------------------------KINDFKDSKKVEDFLY 692 (750) Q Consensus 638 y~ILgD~aL~~V~~TAlgLP~~~a~~DiDkQa~li~~k~-------------------------Di~dl~DP~kv~kli~ 692 (750) ..-+++..|..+++-|=.+| .|..++.|-|..+++... |...++++++++++-+ T Consensus 25 ~~~~a~~~l~~~v~~aK~lp-~F~~L~~~DQi~LLk~~w~el~~l~~ad~~E~alLkAivL~~pD~pgL~~~~~Ie~lq~ 103 (152) T 3cqv_A 25 FSXSFTPAVKEVVEFAKRIP-GFRDLSQHDQVNLLKAGTFEVLXVRFASDEEXSLFTAVVLVSADRSGIENVNSVEALQE 103 (152) T ss_dssp HHHHHHHHHHHHHHHHHTSG-GGGGSCHHHHHHHHHHHHHHHHHHHTGCHHHHHHHHHHHHHTSCCTTCSCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 99999999999999987297-80249999999999999999999999999999999999992875133326899999999 Q ss_pred HHHHH Q ss_conf 98753 Q gi|254781009|r 693 AAKAM 697 (750) Q Consensus 693 RF~Am 697 (750) ++... T Consensus 104 ~~~~a 108 (152) T 3cqv_A 104 TLIRA 108 (152) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 9 >>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymerase, POL alpha family polymerase, transferase; 2.10A {Thermococcus SP} (A:613-653,A:730-775) Probab=36.64 E-value=22 Score=14.28 Aligned_cols=60 Identities=25% Similarity=0.376 Sum_probs=44.5 Q ss_pred CCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHH--HHHHCCCH--HHHHH Q ss_conf 25414799988760865688999999850775889899666899999--99975972--44105 Q gi|254781009|r 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSY--ALKAFGLS--DMSHA 70 (750) Q Consensus 11 ~rd~~~~~~~~~a~~p~V~r~~~yy~~~I~~v~svDdll~D~rl~~y--amkA~GLe--dm~~a 70 (750) +|.++.+.++.+-.+-+|...++|-++-|.++..-|-.+.+.-|-.+ .++|||-- |.-|- T Consensus 7 vKeVq~kVLe~ILiE~DVekAveYVK~VIsDLl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (87) T 1qht_A 7 AKETQARVLEAILKHGDVEEAVRIVKEVTEKLSKYEYYIENQVLPAVERILKAFGYRKEDLRYQ 70 (87) T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHTC------CHHHHTTHHHHSHHHHHTTTC-------- T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHC T ss_conf 9999999999997599999999999999999985999999740899999997729998996125 No 10 >>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A {Giardia intestinalis} PDB: 2iic_A (A:1-74,A:231-310) Probab=28.54 E-value=30 Score=13.47 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=30.1 Q ss_pred HHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 3101122210047999999980988225469999999633888 Q gi|254781009|r 379 QLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPS 421 (750) Q Consensus 379 ~~~~~~~~~~~~~ly~~AlkA~gld~~~~sk~~irkVLesd~~ 421 (750) .+..+++...+.+++.-...+||+.|. ..|+|.|..||. T Consensus 27 ~ltSrYsakeRdKV~~aFrS~yG~~pS----DaIkK~lKnGP~ 65 (154) T 2ii2_A 27 TFTSRWSAEERKELRTQFQDTTGLEFI----AFLKKCIKNGPY 65 (154) T ss_dssp HHHTTCCHHHHHHHHHHHHHHHSSCHH----HHHHHHSCSSHH T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCHH----HHHHHHHCCCCH T ss_conf 998659999999999999999794589----999988679989 No 11 >>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} (A:) Probab=28.04 E-value=28 Score=13.65 Aligned_cols=17 Identities=6% Similarity=0.133 Sum_probs=10.8 Q ss_pred HHHHCCHHHHHHHHHHC Q ss_conf 99724389999999973 Q gi|254781009|r 155 DQLFKDRRLLDYVLQSF 171 (750) Q Consensus 155 ddLL~D~~L~~vv~tAf 171 (750) |+.|...+||.||..+| T Consensus 8 Y~~l~~~AlrgVVr~vL 24 (176) T 2nys_A 8 YDILAQDALRGVIRKVL 24 (176) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999999 No 12 >>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A (A:) Probab=26.57 E-value=31 Score=13.39 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=6.5 Q ss_pred HHHHCCHHHHHHHHHH Q ss_conf 9972438999999997 Q gi|254781009|r 155 DQLFKDRRLLDYVLQS 170 (750) Q Consensus 155 ddLL~D~~L~~vv~tA 170 (750) |+.|...+||.||..+ T Consensus 16 Y~~l~~~AlrgVvr~v 31 (157) T 2qas_A 16 YEAMAQDALRGVVKAA 31 (157) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 8999999999999999 No 13 >>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=26.10 E-value=34 Score=13.20 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=25.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHH Q ss_conf 79999999998778887300385469999998632550029987277899999999 Q gi|254781009|r 597 HIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSK 652 (750) Q Consensus 597 ~~~~i~d~Y~~qs~E~~~Ge~n~gvRLALyF~R~a~~Its~y~ILgD~aL~~V~~T 652 (750) ...+|..+|...+.+-.--... .-....+.-.|..+|+||+|+..|....- T Consensus 20 s~~eIk~aY~~l~~~~hpd~~~-----~~~~~~~~~~i~~Ay~iL~d~~~R~~YD~ 70 (78) T 2ctp_A 20 SDEDLKKAYRRLALKFHPDKNH-----APGATEAFKAIGTAYAVLSNPEKRKQYDQ 70 (78) T ss_dssp CHHHHHHHHHHHHTTSCTTTCS-----SHHHHHHHHHHHHHHHHHTSHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999999999885110135-----40199999988888987089999999981 No 14 >>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* (A:1-150,A:202-302) Probab=25.37 E-value=35 Score=13.12 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=48.8 Q ss_pred CHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHC-----------------------CHHHCCCHHHHHHH Q ss_conf 0029987277899999999704867663199999999999621-----------------------97864998999999 Q gi|254781009|r 634 IRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI-----------------------KINDFKDSKKVEDF 690 (750) Q Consensus 634 Its~y~ILgD~aL~~V~~TAlgLP~~~a~~DiDkQa~li~~k~-----------------------Di~dl~DP~kv~kl 690 (750) ...-..-+++..+..+++=|=.+| .|..++++-|..+++... |...+.+|.+|+++ T Consensus 103 ~~~~~~~l~~~~I~~~vewaK~lP-~F~~L~~~DQi~LLk~~~~elliLl~~~E~~~l~aivl~~pd~~gl~~~~~v~~~ 181 (251) T 2hc4_A 103 MLPHLADLVSYSIQKVIGFAKMIP-GFRDLTAEDQIALLKSSAIEIIMLLHEEEHVLLMAICLLSPDRPGVQDHVRIEAL 181 (251) T ss_dssp THHHHHHHHHHHHHHHHHHHTTST-TTTTSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHTCSCSTTCSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCCCCHHHHHHH T ss_conf 599999999999999999999688-8355999999999999899999999999998765310013688997529999999 Q ss_pred HHHHHHH Q ss_conf 9998753 Q gi|254781009|r 691 LYAAKAM 697 (750) Q Consensus 691 i~RF~Am 697 (750) -.++... T Consensus 182 q~~~~~a 188 (251) T 2hc4_A 182 QDRLCDV 188 (251) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 15 >>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=22.88 E-value=28 Score=13.71 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=17.5 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 9989999999998753110111112 Q gi|254781009|r 682 KDSKKVEDFLYAAKAMDHQSIDYKK 706 (750) Q Consensus 682 ~DP~kv~kli~RF~Am~~~~yD~~n 706 (750) .+|-++++||+.|++|+-+.-++.+ T Consensus 10 a~~~~~~~Li~qFtaITgate~vak 34 (62) T 2dal_A 10 AASSALKGLIQQFTTITGASESVGK 34 (62) T ss_dssp SSCHHHHHHHHHHHHHTCCCHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 6628888899998872051789999 No 16 >>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} (A:) Probab=22.09 E-value=40 Score=12.74 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHH Q ss_conf 67999999999877888----7300385469999998632550029987277899999999 Q gi|254781009|r 596 FHIDDTCDLYKHQMIEK----KEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSK 652 (750) Q Consensus 596 ~~~~~i~d~Y~~qs~E~----~~Ge~n~gvRLALyF~R~a~~Its~y~ILgD~aL~~V~~T 652 (750) +...+|..+|.+.+..- ..+...+..+.. .+.....|..+|.||+|+..|+.-.- T Consensus 28 as~~eIk~aY~~l~~~~hPDk~~~~~~~~~~~~--~~~~f~~i~~Ay~vL~d~~~R~~YD~ 86 (94) T 1wjz_A 28 ANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE--CMQKFIEIDQAWKILGNEETKKKYDL 86 (94) T ss_dssp CCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHH--HHHHHHHHHHHHHHHSSSSHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 599999999999999832023777415888888--89999999999999599999999988 No 17 >>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.44 E-value=44 Score=12.53 Aligned_cols=53 Identities=15% Similarity=0.296 Sum_probs=26.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHH Q ss_conf 79999999998778887300385469999998632550029987277899999999 Q gi|254781009|r 597 HIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSK 652 (750) Q Consensus 597 ~~~~i~d~Y~~qs~E~~~Ge~n~gvRLALyF~R~a~~Its~y~ILgD~aL~~V~~T 652 (750) ...+|..+|.+....---.. ++. .....+.+.-.|..+|+||+|+..|....- T Consensus 22 s~~eIk~ay~~l~~~~hpd~-~~~--~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 74 (82) T 2ej7_A 22 SSEAIKKAYRKLALKWHPDK-NPE--NKEEAERRFKQVAEAYEVLSDAKKRDIYDR 74 (82) T ss_dssp CHHHHHHHHHHHHTTSCTTT-CST--THHHHHHHHHHHHHHHHHHSSTTHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCC-CCC--CHHHHHHHHHHHHHHHHHHCCHHHHHHHHC T ss_conf 99999999999998708766-875--438899999999989998599999999976 No 18 >>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:108-193) Probab=20.34 E-value=44 Score=12.51 Aligned_cols=39 Identities=13% Similarity=0.316 Sum_probs=17.9 Q ss_pred CCCHHHHCCCHHHHHHHHHHHC---CHH-HCCCHHHHHHHHHH Q ss_conf 4867663199999999999621---978-64998999999999 Q gi|254781009|r 655 KLSPYFAVLPERKKIRILKKHI---KIN-DFKDSKKVEDFLYA 693 (750) Q Consensus 655 gLP~~~a~~DiDkQa~li~~k~---Di~-dl~DP~kv~kli~R 693 (750) |||..|.-+|-+-|.++|+.-+ .+. +.-.|..+-..|.| T Consensus 1 Gl~~~F~I~D~~D~~~lik~i~~~~~~~~~~~~~~~il~~IS~ 43 (86) T 1pjr_A 1 GINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISA 43 (86) T ss_dssp TCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHH T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHH T ss_conf 8999984578999999999999976998011689999999999 Done!