Query gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 750
No_of_seqs 168 out of 175
Neff 5.1
Searched_HMMs 13730
Date Wed Jun 1 11:19:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781009.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o8sa1 a.295.1.1 (A:54-278) U 100.0 0 0 473.1 14.9 208 490-707 18-225 (225)
2 d2o8sa1 a.295.1.1 (A:54-278) U 100.0 0 0 380.1 12.0 208 1-211 1-221 (225)
3 d2qxfa1 c.55.3.5 (A:8-474) Exo 50.8 5.4 0.00039 15.6 3.2 33 542-574 369-401 (467)
4 d1xl3c1 a.243.1.1 (C:2-92) Tye 16.1 22 0.0016 11.9 3.2 39 655-693 27-71 (91)
5 d1czan3 c.55.1.3 (N:466-670) M 14.7 18 0.0013 12.5 0.2 10 295-304 62-71 (205)
6 d2edua1 a.60.2.7 (A:8-98) KIF2 9.9 35 0.0025 10.8 1.9 20 502-521 47-66 (91)
7 d3bzka1 a.60.2.6 (A:474-563) T 9.4 36 0.0026 10.7 1.6 25 26-50 45-69 (90)
8 d2nysa1 b.136.1.2 (A:3-119) Un 9.3 37 0.0027 10.6 1.5 17 638-654 6-22 (117)
9 d1xbla_ a.2.3.1 (A:) DnaJ chap 7.3 44 0.0032 10.1 4.3 55 591-649 10-64 (75)
10 d1cvra2 c.17.1.2 (A:1-350) Gin 7.3 24 0.0017 11.8 -1.4 69 579-647 268-345 (350)
No 1
>d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=100.00 E-value=0 Score=473.06 Aligned_cols=208 Identities=25% Similarity=0.468 Sum_probs=198.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf 10245667888989999997415667899994148999999875488854412899999962278885577752164789
Q gi|254781009|r 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRY 569 (750)
Q Consensus 490 ~~~~~~~~~~~~~e~~yf~~~i~~i~s~~dll~D~rl~~~aL~AfGL~~~~~~~~~i~kvL~sd~~d~~slaN~l~D~ry 569 (750)
.....+.++.+++|++||+++|++|+|++|||+|+||++|+|+||||+++++++++|||||+||++||+||||+|+|+||
T Consensus 18 ~~~~~a~~~~v~re~~Yf~e~I~~v~svddll~D~rL~~~al~AfGL~~~~~~~~~lkkvL~sd~~d~~S~aN~l~D~Ry 97 (225)
T d2o8sa1 18 SLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRY 97 (225)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHGGGCCSHHHHHTCHHHHHHHHHHTTGGGSTTCHHHHHHHHHHCSSSTTCGGGGSSSTHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCHHH
T ss_conf 99998627788889999999836788899995488999999997699965363999999982699875889887378889
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHH
Q ss_conf 99997618776576556774322456679999999998778887300385469999998632550029987277899999
Q gi|254781009|r 570 KEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKV 649 (750)
Q Consensus 570 ~~la~aF~F~~~G~~~~~~~~~~q~~~~~~~i~d~Y~~qs~E~~~Ge~n~gvRLALyF~R~a~~Its~y~ILgD~aL~~V 649 (750)
++|++||||+++|+..+ |..++..+|+++|++|+||.++|++|+||||||||+|++|+|+|||+||||++|++|
T Consensus 98 ~~~a~AFnF~~~g~~~~------~~~~~~~~i~~~Y~~~~~E~~~g~~d~~~rlALyf~r~~~~its~~~iL~d~~L~~v 171 (225)
T d2o8sa1 98 AELAKSLDFAGLGAAAT------ATEAAKSGVIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQV 171 (225)
T ss_dssp HHHHHHTCHHHHGGGTT------SSTTTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSTTCCSHHHHHTSHHHHHH
T ss_pred HHHHHHHCCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCHHHHHCCHHHHHH
T ss_conf 99999829999987554------546889999999999998998457788899999999846012469999788899999
Q ss_pred HHHHHCCCHHHHCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9997048676631999999999996219786499899999999987531101111124
Q gi|254781009|r 650 VSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKA 707 (750)
Q Consensus 650 ~~TAlgLP~~~a~~DiDkQa~li~~k~Di~dl~DP~kv~kli~RF~Am~~~~yD~~n~ 707 (750)
|+||||||++|+++|||+|+++|++|+|+++|+||++|++||+||++| ||++|.
T Consensus 172 ~~talgLp~~~a~~did~Q~~~i~~k~d~sd~~DP~~v~~~i~rf~~~----~d~~Np 225 (225)
T d2o8sa1 172 FRTTFNLPDAFAAADVDKQAALIEKSINIKDLQDPEKVGKLLERFTIM----WEMQNP 225 (225)
T ss_dssp HHTTTTC-----CCCCTTHHHHHHHSSCTTTTTCTTHHHHHHHHHHHH----HHHHCC
T ss_pred HHHHCCCCHHHCCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHH----HHCCCC
T ss_conf 999909985543389899999999652297559989999999999999----870196
No 2
>d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=100.00 E-value=0 Score=380.05 Aligned_cols=208 Identities=30% Similarity=0.472 Sum_probs=191.2
Q ss_pred CCCCCCCC-CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 97520210-01254147999887608656889999998507758898996668999999997597244105999999982
Q gi|254781009|r 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILE 79 (750)
Q Consensus 1 ~~~~~~~~-~~~rd~~~~~~~~~a~~p~V~r~~~yy~~~I~~v~svDdll~D~rl~~yamkA~GLedm~~aka~~kKVLe 79 (750)
|+++|++| +..|++...+ ++++++|.|+||++||++|||+|+||||||+|+|||+|||+||||++|+++|+|||||||
T Consensus 1 ~~st~~~~~~l~r~~~~~~-~~~a~~~~v~re~~Yf~e~I~~v~svddll~D~rL~~~al~AfGL~~~~~~~~~lkkvL~ 79 (225)
T d2o8sa1 1 VTSTYTSYRLISQDIGKSL-ERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYAKAFIRKVLT 79 (225)
T ss_dssp CCHHHHHHHHHHHTHHHHH-HHHTTSHHHHHHHHHHHHHGGGCCSHHHHHTCHHHHHHHHHHTTGGGSTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHC
T ss_conf 9624999999983199999-998627788889999999836788899995488999999997699965363999999982
Q ss_pred CCCCCCCHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHH-HHHHHHHHCCCCHHHH---HHHHHCCCCCCH
Q ss_conf 689983301332066899999998187877-76442036788998877-8767753012210458---898511345899
Q gi|254781009|r 80 SDLSDPKSLVNQLNSLKYQYFARSYDFSPP-PKVIQSDIQHKTIIQDY-KQSHQHKEEVALEESK---YFRKNIHKINSV 154 (750)
Q Consensus 80 sd~~D~~s~aNkL~D~Ry~~fA~af~F~~~-~~~~~~~~~~~~~i~~y-~~~~~~~~~~~~~~~~---Yf~~~~~~Itsv 154 (750)
||++||+||||||+|+||++||++|||+++ +..+|+..+++.++++| .++++...++++++++ ||+|++++|+++
T Consensus 80 sd~~d~~S~aN~l~D~Ry~~~a~AFnF~~~g~~~~~~~~~~~~i~~~Y~~~~~E~~~g~~d~~~rlALyf~r~~~~its~ 159 (225)
T d2o8sa1 80 EGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSG 159 (225)
T ss_dssp HCSSSTTCGGGGSSSTHHHHHHHHTCHHHHGGGTTSSTTTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSTTCCSH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHCCH
T ss_conf 69987588988737888999999829999987554546889999999999998998457788899999999846012469
Q ss_pred HHHHCCHHHHHHHHHHCCCCHHHCCHHHHH-------HHHCCCCCCCHHHHHCCCHHHHHHHHH
Q ss_conf 997243899999999739872120389998-------874188777002331035056999998
Q gi|254781009|r 155 DQLFKDRRLLDYVLQSFSITPKYISLPFLK-------DVLTLGLANPKKYFIESRDNRFRAMAE 211 (750)
Q Consensus 155 ddLL~D~~L~~vv~tAfGL~~~~~s~~~lk-------~vLtsD~sDp~S~~n~~~~~~y~~lAa 211 (750)
|+||+|++|++||+||||||++++..+..| ++..+|+.||..+-.- -.||..+-.
T Consensus 160 ~~iL~d~~L~~v~~talgLp~~~a~~did~Q~~~i~~k~d~sd~~DP~~v~~~--i~rf~~~~d 221 (225)
T d2o8sa1 160 LDFLADDALAQVFRTTFNLPDAFAAADVDKQAALIEKSINIKDLQDPEKVGKL--LERFTIMWE 221 (225)
T ss_dssp HHHHTSHHHHHHHHTTTTC-----CCCCTTHHHHHHHSSCTTTTTCTTHHHHH--HHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCHHHCCCHHHHHHH--HHHHHHHHH
T ss_conf 99978889999999990998554338989999999965229755998999999--999999987
No 3
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}
Probab=50.76 E-value=5.4 Score=15.61 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=15.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 289999996227888557775216478999997
Q gi|254781009|r 542 REDFLCEIFKSDLKDPKSFANTYKDNRYKEIIS 574 (750)
Q Consensus 542 ~~~~i~kvL~sd~~d~~slaN~l~D~ry~~la~ 574 (750)
.+..+++.-+.++.+.-.+++++.|+|+++|+.
T Consensus 369 Dk~~~~~fh~a~~~~k~~~~~~f~D~Rl~~l~~ 401 (467)
T d2qxfa1 369 DRAAMKIVLETEPRNLPALDITFVDKRIEKLLF 401 (467)
T ss_dssp HHHHHHHHHHSCTTTSTTCCCCCCSTHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf 789999998479999987863787767999999
No 4
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=16.07 E-value=22 Score=11.92 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=26.6
Q ss_pred CCCHHHHCCCHHHHHHHH------HHHCCHHHCCCHHHHHHHHHH
Q ss_conf 486766319999999999------962197864998999999999
Q gi|254781009|r 655 KLSPYFAVLPERKKIRIL------KKHIKINDFKDSKKVEDFLYA 693 (750)
Q Consensus 655 gLP~~~a~~DiDkQa~li------~~k~Di~dl~DP~kv~kli~R 693 (750)
+|+..++..|+.+|+..+ -+.+-++-|.||+..++|++-
T Consensus 27 ~i~~~~~l~~~e~~I~F~~El~~l~R~iP~~~f~d~e~R~~lL~a 71 (91)
T d1xl3c1 27 HLANAFSLPTPEIKVRFYQDLKRMFRLFPLGVFSDEEQRQNLLQM 71 (91)
T ss_dssp HHHHTTCCSSHHHHHHHHHHHHHHHHTSCGGGSSCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHH
T ss_conf 999871797478998999999999997888855898999999999
No 5
>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.65 E-value=18 Score=12.48 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=3.5
Q ss_pred HHHHHCCCCC
Q ss_conf 1343113650
Q gi|254781009|r 295 KFLTLMQEND 304 (750)
Q Consensus 295 ~~~~~~~~~~ 304 (750)
+|+..+++-.
T Consensus 62 ~fLalDlGGT 71 (205)
T d1czan3 62 DFLALDLGGT 71 (205)
T ss_dssp EEEEEEESSS
T ss_pred EEEEEEECCC
T ss_conf 6999974175
No 6
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.91 E-value=35 Score=10.79 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=8.5
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q ss_conf 89999997415667899994
Q gi|254781009|r 502 SEVDYYTLNINTIHSFEELL 521 (750)
Q Consensus 502 ~e~~yf~~~i~~i~s~~dll 521 (750)
..+-.|++.-|.+++.+||.
T Consensus 47 ~~II~yR~~~G~f~sledL~ 66 (91)
T d2edua1 47 QLIVGWRELHGPFSQVEDLE 66 (91)
T ss_dssp HHHHHHHHHHCCCSSGGGGG
T ss_pred HHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999859978899980
No 7
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.37 E-value=36 Score=10.66 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHC
Q ss_conf 6568899999985077588989966
Q gi|254781009|r 26 PIVSCEERYYRERIKHISTIDEFIK 50 (750)
Q Consensus 26 p~V~r~~~yy~~~I~~v~svDdll~ 50 (750)
|..++.+--|++..|..+|++||+.
T Consensus 45 ~~~A~~Iv~~R~~~G~f~s~edL~~ 69 (90)
T d3bzka1 45 STLAQNIVAHRDANGAFRTRDELKK 69 (90)
T ss_dssp HHHHHHHHHHHHHHCSCSSSGGGGG
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9999999999998699788999950
No 8
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=9.28 E-value=37 Score=10.64 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=0.0
Q ss_pred HHHHCCHHHHHHHHHHH
Q ss_conf 98727789999999970
Q gi|254781009|r 638 YEILGDSKLFKVVSKKL 654 (750)
Q Consensus 638 y~ILgD~aL~~V~~TAl 654 (750)
|+.|-+.+||.|++.+|
T Consensus 6 Y~~lv~~alr~Vvr~~L 22 (117)
T d2nysa1 6 YDILAQDALRGVIRKVL 22 (117)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999
No 9
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=7.32 E-value=44 Score=10.13 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHH
Q ss_conf 22456679999999998778887300385469999998632550029987277899999
Q gi|254781009|r 591 KVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKV 649 (750)
Q Consensus 591 ~~q~~~~~~~i~d~Y~~qs~E~~~Ge~n~gvRLALyF~R~a~~Its~y~ILgD~aL~~V 649 (750)
.+...+...+|..+|.+....---......--..-.|++ |..+|+||.|+..|..
T Consensus 10 gv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~----i~~Ay~vL~d~~~R~~ 64 (75)
T d1xbla_ 10 GVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKE----IKEAYEVLTDSQKRAA 64 (75)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHH----HHHHHHHTTSSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHHCCCHHHHHH
T ss_conf 989996999999999999865023006897179999999----9888970288999999
No 10
>d1cvra2 c.17.1.2 (A:1-350) Gingipain R (RgpB), N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=7.29 E-value=24 Score=11.78 Aligned_cols=69 Identities=13% Similarity=0.016 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------CCCCHHHHHHHCCHHHH
Q ss_conf 7657655677432245667999999999877888730038546999999863---------25500299872778999
Q gi|254781009|r 579 DIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRT---------IPNIRNHYEILGDSKLF 647 (750)
Q Consensus 579 ~~~G~~~~~~~~~~q~~~~~~~i~d~Y~~qs~E~~~Ge~n~gvRLALyF~R~---------a~~Its~y~ILgD~aL~ 647 (750)
.+.|.......+.......-......+.+.-||....+.-..++-++.--.. .......|.+||||+|+
T Consensus 268 ~~~GAIa~~g~t~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~LlGDPal~ 345 (350)
T d1cvra2 268 KPTGTVAIIASTIDQYWAPPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGENMLDTWTVFGDPSLL 345 (350)
T ss_dssp EECSCSEEEEESSCCCSSHHHHHHHHHHHHHTTCSTTCCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHEEEESCTTCB
T ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEE
T ss_conf 875259999602334226851678999999998641688644799999999999974478861004589997477778
Done!