BLAST/PSIBLAST alignment of GI: 254781009 and GI: 116248743 at iteration 1
>gi|116248743|ref|YP_764584.1| putative flagella associated protein [Rhizobium leguminosarum bv. viciae 3841] Length = 727
>gi|115253393|emb|CAK11781.1| putative flagella associated protein [Rhizobium leguminosarum bv. viciae 3841] Length = 727
 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 209/712 (29%), Positives = 361/712 (50%), Gaps = 37/712 (5%)

Query: 1   MIPSHVAPFP-SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
           M+ ++V+    ++++ + L S V+    V+ +  YY+E I  ++T+DEF+ D +L+SYA+
Sbjct: 1   MVSTYVSYLTVARNLNASL-SNVASQATVARDSAYYKENIDKVTTVDEFMSDYKLYSYAM 59

Query: 60  KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
           KA+GL DM++A+ F+KK+LESDLSD  S  N L+  +Y  FA ++ F+   K  QSD+Q 
Sbjct: 60  KAYGLEDMTYAKAFMKKVLESDLSDSSSFANSLSDTRYAEFAAAFKFAGETKTAQSDVQR 119

Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
             ++  Y++S   +     + + YF  NI  I SVD L    +L +YVL +F ++ +Y S
Sbjct: 120 DNLLDAYEESFDTEAGDIADATDYFEDNISSITSVDDLLSSSKLKNYVLTAFGLSTEYTS 179

Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
             FLK VLT  L     +  +  D  +  +++ F F  DG L+  D ++++ QI  + S 
Sbjct: 180 SSFLKSVLTSDLDETDSFVNQLDDEVYVNLSKAFNFNEDG-LTDGD-VMSEDQISLVTSA 237

Query: 240 YFNNTIDCVPIVSDQ------NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITA 293
           Y    +    I S +       Y+   I +++S  + + D KL   L+ +    + E   
Sbjct: 238 Y---AVASATIASSETGEAYDTYFAAQIGNITSVDELMSDDKLVSYLRTAYGLTDSET-- 292

Query: 294 DKFLTLMQENDPIVSQV---KYFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL 348
           D F++   ++  I   +   +     NF  D   +     Q   Q       + +N ++L
Sbjct: 293 DNFISAALKSADIADAIGLSELHDAFNFDEDGALADGDTAQTSEQTAATTAAFDENYEVL 352

Query: 349 -HDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
             +   +  + +Y   +  + SID+ L      +  ++ + P +  + AL AY+++   +
Sbjct: 353 IANTDTEDAVDNYTTRIASVTSIDDFLVSNDDDDDDDNDDLPEL-WEMALRAYDIDPDSV 411

Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
            R ++R +L S+PSD  SY N   DDR +    AFNF+ +G +  +P+     ++ D+  
Sbjct: 412 SRSEVRKILESDPSDSKSYVNSLDDDRFVAFRKAFNFDDNGDV-TVPLQAMSESVVDDYA 470

Query: 468 HY--ANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKR 525
            Y   N+ R +   E      M + +         +  + Y+   + TI +  E LA+ R
Sbjct: 471 TYYKQNKIRYLEGDE------MTEATDAA------DEGITYFREQMATITTASEFLADDR 518

Query: 526 ILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELS 585
           +++F+LE+KG+D   V  D L E+F SDL D  S+ N   DNR+ E++ +FNFD  G +S
Sbjct: 519 LVSFVLEAKGLDPDDVTSDALEEMFASDLDDEDSYVNKLDDNRFAELVGAFNFDQDGNIS 578

Query: 586 HKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSK 645
            +  G VQ    + +T D Y    +E  + + +  + LALYF+R  P I + Y+ILGDS 
Sbjct: 579 AEPTGTVQQRGDVLETIDAYVRLTLEDDQGDSNTGVRLALYFQRKAPEISSAYDILGDSA 638

Query: 646 LFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
           LF+  +    LS Y + +   K+  ++   I I D  D  KV+D +    AM
Sbjct: 639 LFEFFTTSFNLSSYVSNMDVDKQAEMIDNFIDIEDLSDPDKVDDLIKRFTAM 690