BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781009|ref|YP_003065422.1| hypothetical protein
CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62]
(750 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040686|gb|ACT57482.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 750
Score = 1515 bits (3923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/750 (100%), Positives = 750/750 (100%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK
Sbjct: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK
Sbjct: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL
Sbjct: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY
Sbjct: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
Query: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM 300
FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM
Sbjct: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM 300
Query: 301 QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY 360
QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY
Sbjct: 301 QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY 360
Query: 361 QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP 420
QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP
Sbjct: 361 QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP 420
Query: 421 SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE 480
SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE
Sbjct: 421 SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE 480
Query: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540
NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK
Sbjct: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540
Query: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600
VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD
Sbjct: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600
Query: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660
TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF
Sbjct: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660
Query: 661 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN 720
AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN
Sbjct: 661 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN 720
Query: 721 NSFDDPQNNVSLQLSPQKKSNGRFSILNLF 750
NSFDDPQNNVSLQLSPQKKSNGRFSILNLF
Sbjct: 721 NSFDDPQNNVSLQLSPQKKSNGRFSILNLF 750
>gi|315122487|ref|YP_004062976.1| hypothetical protein CKC_03695 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495889|gb|ADR52488.1| hypothetical protein CKC_03695 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 757
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/746 (56%), Positives = 545/746 (73%), Gaps = 18/746 (2%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
S + K +T+SKDPIVS EE+YYRE+IK IST++EFI DKRL +Y LKAF LSDMSHA
Sbjct: 23 SDKVYKKSIATISKDPIVSREEKYYREKIKKISTVEEFINDKRLLNYVLKAFDLSDMSHA 82
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSH 130
+ F++KIL SDLS P+SLVN++NS KYQ FA +DFSP PK IQ+ IQ K +I+DY S+
Sbjct: 83 KTFLQKILTSDLSVPESLVNKMNSKKYQTFASQFDFSPAPKSIQTTIQQKKVIEDYITSY 142
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLG 190
+ KE+ ALEESKYFR+NI+ I SVDQL K+RRL++Y LQSF I P+YISL FLK+ LT
Sbjct: 143 KRKEKDALEESKYFRQNINNITSVDQLIKNRRLVNYALQSFGINPQYISLSFLKESLTSE 202
Query: 191 LANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVP- 249
L + K+ ++N A+A+NFRFQ +GS +DKILT+MQIE +V NYF++TI VP
Sbjct: 203 LDHTKQK--TPKENLLHALADNFRFQSNGSPIHKDKILTNMQIENMVHNYFSHTIMSVPE 260
Query: 250 --IVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIV 307
I SDQ YY+ +INS+ SF LKDPKL+K+LQ+SL L+P++T + FL L++ NDP +
Sbjct: 261 EVIFSDQKYYRSSINSIPSFEQLLKDPKLYKILQISL-SLDPKVTENNFLKLIKNNDPSI 319
Query: 308 SQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPL-GK 366
QVK FFQI++ D +S IQ QI K+L LY+ NC+ L K++SLI++Y+ + G
Sbjct: 320 VQVKKFFQIDYAGDINSRPAIQTKKQIDKLLFLYQTNCKKLRSQKIESLIENYKKDISGD 379
Query: 367 IKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSY 426
IKS+D L+ K + ++ +PI L+FAL AY + DL++ +LR++L S+ SD SY
Sbjct: 380 IKSVDQFLNMKPKSYISSNKSQPITPLEFALQAYGIKKNDLNKYRLRDILISDSSDSKSY 439
Query: 427 ANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNS 486
N+ KD+R I L+HAFNFN G IG + QS+LT+RDNV +Y K+S+++ ENK F+S
Sbjct: 440 VNQLKDNRFINLHHAFNFNKKGEIGFNRLTQSKLTLRDNVMNYIGYKKSLYN-ENKIFSS 498
Query: 487 MEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFL 546
+ I RI + + EV+YYT NI TIHSF +LLANKRILNFLLESK ID +KV+ FL
Sbjct: 499 AQNI----RIKKDTDKEVEYYTSNIQTIHSFNDLLANKRILNFLLESKEIDPKKVKNSFL 554
Query: 547 CEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
+IFKSDL + KS ANTYKD+RYKEI+ SFNFDIHG S++ GKVQDNFHID DLYK
Sbjct: 555 EKIFKSDLNNTKSLANTYKDSRYKEIMLSFNFDIHGTKSNENTGKVQDNFHIDHVVDLYK 614
Query: 607 HQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPER 666
+Q+++KKEEEKDP++AL LYFKRTIP I+N Y+ILGD LF+V+SKKL+LSP+F LPE
Sbjct: 615 NQILQKKEEEKDPDVALLLYFKRTIPTIKNIYDILGDKNLFQVISKKLRLSPHFPSLPES 674
Query: 667 KKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSS--PNQNKDPWNNSFD 724
KI ILKK I I DFKD KK+E+FLYA +QS +K AL + P KD S D
Sbjct: 675 TKIHILKKLINIKDFKDPKKLENFLYAVNVNHYQSTTHKIALTLAFFPPLEKD----SMD 730
Query: 725 DPQNNVSLQLSPQKKSNGRFSILNLF 750
D + N+SLQLSP KK NG+FSILNLF
Sbjct: 731 DHEKNISLQLSPNKKENGKFSILNLF 756
>gi|222147731|ref|YP_002548688.1| hypothetical protein Avi_0969 [Agrobacterium vitis S4]
gi|221734719|gb|ACM35682.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 727
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 225/721 (31%), Positives = 377/721 (52%), Gaps = 56/721 (7%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ +++ ++D+++ L VS++P V+ E++YY+E I + T+D+F+ D RL+ Y +
Sbjct: 1 MVSTYIGYDLVNRDMKASL-KRVSQEPEVAREQKYYQENIGKVKTVDDFMNDDRLYQYTM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA GL DM++A+ F+KK+LESDLSD S N+L +Y+ FARS++FS IQ+D Q
Sbjct: 60 KANGLEDMTYAKAFMKKVLESDLSDEDSYANKLADDRYRDFARSFNFSAETADIQTDKQE 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+ +I YKQS + + A EE +Y+ I K+ +VD L K+ RL +VL+S+ + KY S
Sbjct: 120 EDVIGLYKQSLVTEGDDAKEEVQYYDSAIDKVTNVDDLLKNSRLTKFVLESYGLDTKYYS 179
Query: 180 LPFLKDVLTLGLANPKKYF--IESRDNRFRAMAENFRFQPDGSL-------SKRDKILTD 230
LK VLT + + Y + + + + +A+ F F DGSL S + + D
Sbjct: 180 TDHLKKVLTSDVNDSTSYVNTLTTNKSDYVNIAKAFSFNTDGSLKNATAQTSDQKTAMED 239
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPE 290
+ +E++ S T + YYK I +V+ SD D +LF ++ +L ++
Sbjct: 240 LYLEEVPS-----TETAYQAEREAAYYKEKIATVTKASDITGDSRLFSYVKTAL-GMDKN 293
Query: 291 ITADKFLTLMQE--NDP-----IVSQVKYFFQ-----INF-HRDNSSSTKIQQDSQIQKM 337
F ++ ND +VK + NF N+++ Q ++Q+ +
Sbjct: 294 TLKSTFENIVTSDLNDANSYANTQGKVKGEYAKIAAMFNFDTSGNATAGNAQSETQLSQT 353
Query: 338 LDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFAL 397
Y N + SL Y + I +D+LL E I + +
Sbjct: 354 ATAYMTNYDDEDQANLSSLTTYYSTQMKSITKVDDLL-----------GNEKIYDM--VM 400
Query: 398 DAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM- 456
AY + + + L+ VLTS+ +DP SYANK++D+RLI L AFNF DG+ +P++
Sbjct: 401 KAYGIETDEFSKADLKKVLTSDMNDPKSYANKTRDERLISLASAFNFKEDGT-ADVPLLA 459
Query: 457 QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
QS TI + K Y +K + + + T + E +S+ YY NI + S
Sbjct: 460 QSERTITEVAKDYIVQKTRFLEGKEQ---------TDAKTAAEEDSK--YYQENIVKVSS 508
Query: 517 FEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSF 576
+LL ++++++F L ++G+D + V +D L ++F SDL DPKSFANT D Y + ++S+
Sbjct: 509 VTDLLKDRKLVDFALTAQGLDPKDVSDDMLKQLFSSDLTDPKSFANTQADEGYAKFVASY 568
Query: 577 NFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN 636
NFD G++S + VQ+ +T +LY HQ +E ++ E D + LALY+ R I +
Sbjct: 569 NFDSSGKISQENADGVQNRSETFNTENLYLHQTLENEQGESDQGVRLALYWDRMSSTITS 628
Query: 637 HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKA 696
Y+ILGD+ L +V L + + ++ ++++K + + D D +K + FL A
Sbjct: 629 AYDILGDTALLEVFRTAYSLPSDMSNMDIEQQKKVIEKKMDLKDLSDPEKQKKFLQRFTA 688
Query: 697 M 697
M
Sbjct: 689 M 689
>gi|15889789|ref|NP_355470.1| hypothetical protein Atu2524 [Agrobacterium tumefaciens str. C58]
gi|15157715|gb|AAK88255.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 774
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 225/760 (29%), Positives = 375/760 (49%), Gaps = 100/760 (13%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+P++ +++++S L V+ DPI+S + +YY + I + ++D F+KD +L+SYA+
Sbjct: 1 MLPAYTTYALYNRNMESSL-KRVANDPIISRDAKYYADNIGKVKSLDAFLKDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP--PPKVIQSDI 117
KA GL +M++A F+KK+LES+L DP S VN+L +Y+ FA ++DF K +Q+
Sbjct: 60 KAHGLEEMTYATAFMKKVLESNLKDPNSFVNKLKDTRYRDFAAAFDFGTIKTEKTVQTKS 119
Query: 118 QHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKY 177
Q ++ Y + + + E EE++Y+ I K+ VD +FK+ RL +YV +SF I P+
Sbjct: 120 QQDRLVTAYHDTDKQRNEEQKEETRYYNIVIDKVGQVDDIFKNTRLRNYVFKSFGIDPQT 179
Query: 178 ISLPFLKDVLTLGLANPKKY---------------FIESRDNRFR--------------- 207
LK VLT ++ Y + RD R +
Sbjct: 180 FDYQHLKGVLTSDISKADSYVNSTYKPLLEEWQAKIADLRDQRTKIPSTDKTSLEKNDYL 239
Query: 208 ---------------AMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF--NNTIDCVPI 250
+A F F+ DG ++ K T +Q NY N +
Sbjct: 240 INQYNKRINGAAKLFELAATFNFRADGLVNDGTKAQTAVQKRLTNENYVLANPRVTQTGA 299
Query: 251 VSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQEN--DP--- 305
+ +++++ A+ V+ + +L ML ++ + T K ++EN DP
Sbjct: 300 ILNRDFFVQAMKDVTDAGQLTANSRLRTMLIVAFNLEDNSGTDQKIQWALRENPADPQSG 359
Query: 306 --------IVSQVKYFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQS 355
+ K F NF D ++ +Q D Q+ +++LY +DDK ++
Sbjct: 360 LYREKDKGFIDLAKAF---NFGTDGKVAAGKAVQSDGQLSTIMNLYFSR----YDDKQEA 412
Query: 356 ----LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
IKDY+ +G K++D+ LS +A + FAL A+N+ ++ +
Sbjct: 413 ADEKTIKDYRRYIGLTKNLDDFLS---------AAPAAVAIRNFALKAFNIGTEESSTFK 463
Query: 412 LRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN 471
L+ V TS+ S+P SY KDDR ++L AFNF+A G IG Q+ I ++Y
Sbjct: 464 LKKVFTSDLSNPKSYVYTLKDDRFLRLAKAFNFDAQGKIGSPRFAQAENEIARISRNY-- 521
Query: 472 RKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLL 531
+ + K+I + EV YY + T+ + ++LLA++R+L+F+L
Sbjct: 522 ------------LKEVTRWDKDKKIREKGEKEVGYYREKMGTLETADQLLADRRLLDFML 569
Query: 532 ESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGK 591
++ ID + + D+L +IFKSDLKDPKSFANT KD R++ + SFNFD G +S
Sbjct: 570 VAERIDPKSITTDYLKKIFKSDLKDPKSFANTEKDPRFRALAGSFNFDAKGNISATTRQP 629
Query: 592 VQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVS 651
+Q+N + +T D Y Q +E++ E++ + LALYFKR I + Y+IL D L +V
Sbjct: 630 IQNNRSLMETRDKYVRQKLEERAGEENSGVRLALYFKRMAGGISSAYDILADKALSEVTR 689
Query: 652 KKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFL 691
L + A + ++++K +KI D +D KKVE +
Sbjct: 690 TALGIPAETANAKVDAQAKMIEKRLKIKDLQDPKKVEKLV 729
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 150/325 (46%), Gaps = 36/325 (11%)
Query: 35 YRERIKHISTIDEFIKDK----RLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVN 90
YR I +D+F+ + ++ALKAF + + +KK+ SDLS+PKS V
Sbjct: 421 YRRYIGLTKNLDDFLSAAPAAVAIRNFALKAFNIGTEESSTFKLKKVFTSDLSNPKSYVY 480
Query: 91 QLNSLKYQYFARSYDFSP-----PPKVIQSDIQHKTIIQDYKQSHQHKE------EVALE 139
L ++ A++++F P+ Q++ + I ++Y + + E +
Sbjct: 481 TLKDDRFLRLAKAFNFDAQGKIGSPRFAQAENEIARISRNYLKEVTRWDKDKKIREKGEK 540
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
E Y+R+ + + + DQL DRRLLD++L + I PK I+ +LK + L +PK +
Sbjct: 541 EVGYYREKMGTLETADQLLADRRLLDFMLVAERIDPKSITTDYLKKIFKSDLKDPKSFAN 600
Query: 200 ESRDNRFRAMAENFRFQPDGSLSK--RDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN-- 255
+D RFRA+A +F F G++S R I + + + Y ++ ++N
Sbjct: 601 TEKDPRFRALAGSFNFDAKGNISATTRQPIQNNRSLMETRDKYVRQKLE--ERAGEENSG 658
Query: 256 -----YYKLAINSVSSFSDFLKDPKLFKMLQLSLF----PLNPEITA-----DKFLTLMQ 301
Y+K +SS D L D L ++ + +L N ++ A +K L +
Sbjct: 659 VRLALYFKRMAGGISSAYDILADKALSEVTRTALGIPAETANAKVDAQAKMIEKRLKIKD 718
Query: 302 ENDP-IVSQVKYFFQINFHRDNSSS 325
DP V ++ F + F +NS S
Sbjct: 719 LQDPKKVEKLVNRFLMTFEANNSGS 743
>gi|327192290|gb|EGE59255.1| hypothetical protein RHECNPAF_2330071 [Rhizobium etli CNPAF512]
Length = 773
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 208/710 (29%), Positives = 359/710 (50%), Gaps = 33/710 (4%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
++ ++V+ S S V+ V+ + YY++ I ++T+DEF+ D +L+SYA+K
Sbjct: 47 LVSTYVSYLAVARNLSTSLSNVASQATVARDSAYYKDNIGKVTTVDEFMGDYKLYSYAMK 106
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ FS K QSD+Q
Sbjct: 107 AYGLEDMTYAKAFMKKVLESDLSDSSSFANSLSDSRYAEFAAAFKFSGETKTAQSDVQRD 166
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
++ Y+ S + + + +E+ YF +NI I SVD RL YVL +F ++ +Y S
Sbjct: 167 NLLDAYEASFETEADTIEDETDYFEENIASITSVDDFLSSSRLKSYVLTAFGLSTEYTSS 226
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FLKDVLT L + + + D+ + ++A+ F F DGS+ ++++ QI + S Y
Sbjct: 227 SFLKDVLTSDLDDADSFVNQLDDDVYVSLAKAFNFNEDGSVDG--DLMSEDQISLVTSAY 284
Query: 241 FNNTIDCVPIVSDQ------NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
+ I S Q +Y+ I +++S + D KL L+ + + E +D
Sbjct: 285 ---AVASATIASTQTGEAYDSYFAAEIGNITSVDQLMSDDKLVSYLRTAYGLTDDE--SD 339
Query: 295 KFLTLMQENDPIVSQVK---YFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL- 348
F++ ++ I + NF D + Q Q + +N Q+L
Sbjct: 340 TFISAALKSADIAEAIGLSDLHDAFNFDEDGALADGDSAQTSDQTAATTAAFDENYQVLI 399
Query: 349 HDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLD 408
+ + + +Y + + SID+ L + ++ + P + + AL A+ ++ +
Sbjct: 400 ANTDTEVAVDNYTTRIASVTSIDDFLVSNADDDDDDNDDLPEM-WEMALRAFGIDPDSVS 458
Query: 409 RDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPM-MQSRLTIRDNVK 467
+ Q+R +L S+P+D SY N DDR + AFNF++DG + +P+ S + D
Sbjct: 459 KSQVRKILESDPTDSKSYVNSLNDDRFVAFRKAFNFDSDGDV-TVPLQAMSESVVDDYAA 517
Query: 468 HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRIL 527
+Y K D + + + E+ Y+ + TI + E LA+ R++
Sbjct: 518 YYKQNKIRYLDGDELT-----------EATDAADDEITYFREQMATITTASEFLADDRLV 566
Query: 528 NFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHK 587
+F+LE+KG+D V D L ++F SDL D S+ N DNR+ E++ +FNFD G +S +
Sbjct: 567 SFVLEAKGLDPDDVTSDQLKKMFSSDLDDEDSYVNKLDDNRFAELVGAFNFDQDGNISAE 626
Query: 588 KIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLF 647
G+VQ + +T D Y +E ++ + + + LALYF+R I + Y+ILGDS LF
Sbjct: 627 PTGEVQQRGDVLETVDAYVRLTLEDEQGDSNTGVRLALYFQRKASEISSAYDILGDSALF 686
Query: 648 KVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
+ + +S Y + + K+ +++ I I D D KV+D + AM
Sbjct: 687 EFFTTSFNISSYVSNMDVDKQAEMVENFIDIKDLSDPDKVDDLIKRFTAM 736
>gi|209547533|ref|YP_002279451.1| hypothetical protein Rleg2_5534 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538777|gb|ACI58711.1| protein of unknown function DUF1217 [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 738
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 207/692 (29%), Positives = 344/692 (49%), Gaps = 33/692 (4%)
Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKIL 78
S+V+ VS + YY+E I ++T+DEF+ D +L+SYA+KA+GL DM++A+ F+KK+L
Sbjct: 30 LSSVASQGTVSRDSAYYKENIGKVTTVDEFMGDYKLYSYAMKAYGLDDMTYAKAFMKKVL 89
Query: 79 ESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVAL 138
ESDLSD S N L+ +Y FA ++ F K QSD+Q +T++ Y+ S + E
Sbjct: 90 ESDLSDSSSFANSLSDGRYAEFAAAFKFGGETKTAQSDVQRETLLDAYESSFDTEAEDIA 149
Query: 139 EESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYF 198
+E+ YF +NI I SVD RL +Y L +F ++ Y S FLK VLT L + +
Sbjct: 150 DETDYFEENISSITSVDDFLSSSRLKNYALTAFGLSTDYTSSSFLKQVLTSDLDDSDSFV 209
Query: 199 IESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSD----- 253
+ D+ + ++A+ F F DGS ++++ QI + S Y + + S
Sbjct: 210 NQLGDDVYVSLAKAFNFNEDGSTDG--DVMSEDQISLVTSGY---AVASSTVASSDTGEA 264
Query: 254 -QNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVK- 311
Y+ I +++S + D KL L+++ + E +D F++ ++ I +
Sbjct: 265 YDTYFAAEIGNITSVDQLMNDDKLVGYLRIAYGLTDDE--SDTFISAALKSADIADAIGL 322
Query: 312 --YFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL-HDDKMQSLIKDYQLPLGK 366
NF D + Q Q + +N Q+L + + + +Y +
Sbjct: 323 SDLHDAFNFDEDGALADGDTAQTSEQTATTTAAFDENYQVLIANTDSEDAVDNYTTRIAS 382
Query: 367 IKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSY 426
+ SID+ L + + + P + + AL A++++ + R Q+R +L S+P+D SY
Sbjct: 383 VTSIDDFLVSNADDDVDGNDDLPEM-WEMALRAFDIDPDSVSRSQVRKILESDPTDSKSY 441
Query: 427 ANKSKDDRLIKLNHAFNFNADGSIGPIPM-MQSRLTIRDNVKHYANRKRSIHDAENKSFN 485
N DDR + AFNF++DG + +P+ S + D +Y K D ++ +
Sbjct: 442 VNSLDDDRFVAFRKAFNFDSDGDV-TVPLQAMSESVVDDYAAYYKQNKIRYLDGDDLT-- 498
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ E+ Y+ + TI + E LA+ R+++ LE+KG+D V D
Sbjct: 499 ---------EATDAADDEISYFREQMATITTASEFLADDRLVSLALEAKGLDPDDVTSDQ 549
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
L ++F SDL D S+ N D+R+ E++ SFNFD G +S G VQ + +T D Y
Sbjct: 550 LKKMFSSDLDDEDSYVNKLDDSRFAELVGSFNFDQDGNISADPTGTVQQRGDVLETIDSY 609
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
+E + + + + LALYF+R P I + Y ILGDS LF+ + LS Y + +
Sbjct: 610 VRLTLEDDQGDSNTGVRLALYFQRKAPEISSAYGILGDSALFQFFTTTFNLSSYVSNMDV 669
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
K+ ++ I I D D KV+D + AM
Sbjct: 670 DKQAEMVNNFIDIKDLADPDKVDDLIKRFTAM 701
>gi|86360899|ref|YP_472786.1| hypothetical protein RHE_PF00168 [Rhizobium etli CFN 42]
gi|86285001|gb|ABC94059.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 727
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 212/710 (29%), Positives = 370/710 (52%), Gaps = 33/710 (4%)
Query: 1 MIPSHVAPFP-SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ ++V+ ++++ + L S+V+ V+ + YY+E I ++T+DEF+ D +L+SYA+
Sbjct: 1 MVSTYVSYLAVARNLNASL-SSVASQATVARDSAYYKENIDKVTTVDEFMGDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ F+ K QSD Q
Sbjct: 60 KAYGLEDMTYAKAFMKKVLESDLSDSSSFANSLSDGRYAEFAAAFKFAGETKTAQSDEQR 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+++ Y+ S + E +E+ YF +NI I SVD L RL +YVL +F ++ +Y S
Sbjct: 120 DSLLDAYEDSFDTEAENIEDETDYFEENISSITSVDDLLSSSRLKNYVLTAFGLSTEYTS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FLKDVLT L + + + + D+ + ++A+ F DGS ++++ Q+ + S
Sbjct: 180 TSFLKDVLTSDLDDSESFVNQLDDDVYVSLAKAFNVSEDGSTDG--DVMSEDQLSLVTSA 237
Query: 240 YFNNTIDCVPIVSDQ---NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKF 296
Y + + + Y+ I +++S + D KL L+ + + E D F
Sbjct: 238 YAVASSTLASTETGEAYDTYFAAQIGNITSVDQLMSDDKLVSYLRTAYGLSDTET--DNF 295
Query: 297 LTLMQENDPIVSQVK---YFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL-HD 350
++ ++ I + NF D + Q Q + +N Q+L +
Sbjct: 296 ISAALKSADIADAIGLSDLHDAFNFDEDGALADGETAQTSEQTAATTAAFDENYQVLIAN 355
Query: 351 DKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRD 410
+ + + +Y + I SID+ L + ++ + P + + AL A+ ++ ++ +
Sbjct: 356 TETEDAVDNYTTRIASITSIDDFLVSNADDDDDDNDDLPEL-WEMALRAFGIDSGEVSKS 414
Query: 411 QLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHY- 469
++R +L S+P DP SY N KDDR +AFNF++DG + +P+ ++ D+ Y
Sbjct: 415 EVRKILESDPGDPKSYVNSLKDDRFEAFRNAFNFDSDGDV-TVPLQAMSESVVDDYAAYY 473
Query: 470 -ANRKRSIHDAE-NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRIL 527
N+ R + E ++ ++ ++ E++Y+ + TI S E LA+ R++
Sbjct: 474 KQNKIRYLEGDELTEATDAADE-------------EIEYFRDQMATITSASEFLADDRLV 520
Query: 528 NFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHK 587
F LE+KG+D + V D L +IF SDL D S+ N +D+R+ E++ SFNFD G +S
Sbjct: 521 AFALEAKGLDPEDVTSDDLEKIFSSDLDDEDSYVNKLEDSRFAELVGSFNFDRDGNISAD 580
Query: 588 KIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLF 647
G VQ + +T D Y +E + + + + LALYF+R P I + Y+ILGDS LF
Sbjct: 581 PTGTVQQRGDVLETVDAYVRLTLEDDQGDSNTGVRLALYFEREAPEISSAYDILGDSALF 640
Query: 648 KVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
+ + LS Y + + K+ +++ I I D D KV+D + AM
Sbjct: 641 EFFTTSFNLSSYVSNMDVDKQAEMIENFIDIKDLADPDKVDDLIKRFTAM 690
>gi|325293876|ref|YP_004279740.1| hypothetical protein AGROH133_08567 [Agrobacterium sp. H13-3]
gi|325061729|gb|ADY65420.1| hypothetical protein AGROH133_08567 [Agrobacterium sp. H13-3]
Length = 775
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 236/763 (30%), Positives = 375/763 (49%), Gaps = 105/763 (13%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
V+ DP+VS + +YY + I + +D F+KD RL+SYA+KA GL +M +A F+KK+LES+
Sbjct: 23 VANDPVVSRDAKYYADNIGTVKNLDAFLKDFRLYSYAMKAHGLEEMIYATAFMKKVLESN 82
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP--PPKVIQSDIQHKTIIQDYKQSHQHKEEVALE 139
L+DP S N+L +Y+ FA S+DF K +Q+ Q +I Y + + + E
Sbjct: 83 LNDPNSFANKLKDTRYRDFAASFDFGTIKAEKSVQTKSQQDRLIATYHATIEQEGAELKE 142
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYF- 198
E++++ I K+ VD +FK+ R+ DY+ +SF I P+ S +K+VLT ++N Y
Sbjct: 143 ETRFYNIAIEKVGHVDDIFKNTRVRDYIFKSFGIDPETFSYKHVKNVLTSDISNADSYIN 202
Query: 199 -----------------------IESRD---------------------NRFRAMAENFR 214
+ S D N+ MA F
Sbjct: 203 KTYKSLIPEWKAKAADLRIERAGVASTDKPALAKIDYLISQYNKRINDANKLFEMAAAFN 262
Query: 215 FQPDGSLSKRDKILTDMQIEKIVSNYF--NNTIDCVPIVSDQNYYKLAINSVSSFSDFLK 272
F+ DG + T Q I Y N + V ++ Y+ + +++ S +
Sbjct: 263 FRDDGRVDDGMPAQTAAQRRLINETYVLSNPRLTQAGAVLNREYFVDKMKTITEASQMTQ 322
Query: 273 DPKLFKMLQLSLFPLNPEITADK---FLTLMQENDP-----------IVSQVKYFFQINF 318
+L ML +S F L DK + L NDP +V + F NF
Sbjct: 323 FARLRTMLIVS-FNLTDNDETDKKIGWAVLQDPNDPQSPIHKEKDKGLVDLARAF---NF 378
Query: 319 HRDNSSST-KIQQDS-QIQKMLDLYKKNCQILHDDKMQSL----IKDYQLPLGKIKSIDN 372
D T K+ Q + Q+ M++LY +DDK ++ IK+YQ +G K++++
Sbjct: 379 GADGKIKTGKVAQTAEQLNTMMNLYFSR----YDDKDEAADEKAIKNYQRYIGLTKNLED 434
Query: 373 LLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKD 432
LS +A+ +I FAL A+++ ++ L+ V TS+ SDP SY KD
Sbjct: 435 FLS---------NAQGAVIIRNFALKAFDITAEEASSFTLKRVFTSDLSDPKSYVYTLKD 485
Query: 433 DRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQIST 492
+R ++L AFNF+A+G IG + QS I ++Y + +
Sbjct: 486 ERFVRLAKAFNFDAEGKIGSPRLAQSENEITRISRNY--------------LKEVTRWDK 531
Query: 493 QKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKS 552
K++ + EV YY + TI + ++LL+++R+L+F+L ++ ID + V D+L +IFKS
Sbjct: 532 DKKVREKGEKEVAYYRQKMETIETVDQLLSDRRLLDFMLIAQRIDPKTVTTDYLKKIFKS 591
Query: 553 DLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEK 612
DLKDPKSFANT KD R++ + SFNFD G + K VQ+ + +T D Y Q +E+
Sbjct: 592 DLKDPKSFANTEKDARFRALAGSFNFDAKGNIVAKAGQSVQNTRSLMETRDKYVRQTLEQ 651
Query: 613 KEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRIL 672
+ E++ + LALYFKR +I N Y+IL D+ L + L + A + +++
Sbjct: 652 RVGEENSGVRLALYFKRMAASISNPYDILADNALAEFTRTALGIPAETANSKVDAQAKMI 711
Query: 673 KKHIKINDFKDSKKVED----FLYAAKAMDHQSIDYKKALFSS 711
+K +KI D +D KKVE FL +A + S D + ALF S
Sbjct: 712 EKKLKIKDLQDPKKVEKLVNRFLLTFEANNATS-DPRLALFGS 753
>gi|241113587|ref|YP_002973422.1| protein of unknown function DUF1217 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861795|gb|ACS59461.1| protein of unknown function DUF1217 [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 727
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 207/712 (29%), Positives = 356/712 (50%), Gaps = 37/712 (5%)
Query: 1 MIPSHVAPFP-SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ ++V+ ++++ + L S+V+ VS + YY+E I ++T+DEF+ D +L+SYA+
Sbjct: 1 MVSTYVSYLSVARNLNASL-SSVASQATVSRDSAYYKENIDKVTTVDEFMSDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+ K+LESDLSD S N L+ +Y FA ++ F+ K QSD+Q
Sbjct: 60 KAYGLEDMTYAKAFMTKVLESDLSDSSSFANSLSDTRYAEFAAAFKFAGETKTAQSDVQR 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
++ Y++S + + + + YF +NI I SVD L +L +YVL +F ++ +Y S
Sbjct: 120 DNLLDAYEESFDTEADDIADATDYFEENISSITSVDDLLSSSKLKNYVLTAFGLSTEYTS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FLK VLT L + + + D + +A+ F F DGS ++++ QI + S
Sbjct: 180 TSFLKSVLTSDLEDADSFVNQLDDAVYVNLAKAFNFNEDGSTDG--DVMSEDQISLVTSA 237
Query: 240 YFNNTIDCVPIVSDQ------NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITA 293
Y + I S + Y+ I +++S + + D KL L+ + + E
Sbjct: 238 Y---AVASATIASSETGEAYDTYFAAQIGNITSVDELMSDDKLVSYLRTAYGLTDSET-- 292
Query: 294 DKFLTLMQENDPIVSQVKY-----FFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQIL 348
D F++ ++ + + F + D + Q Q + +N Q+L
Sbjct: 293 DNFISAALKSADVADAIGLSDLHDAFNFDEDGDLADGDTAQTSDQTATTTAAFDENYQVL 352
Query: 349 -HDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
+ + +Y + + SID+ L + ++ + P + + AL AY+++ +
Sbjct: 353 VANASTEDATDNYTTRIASVTSIDDFLVSNDDDDDDDNDDLPEL-WEMALRAYDIDPDSV 411
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
R ++R +L S+P+D SY N DDR + AFNF+ +G + +P+ ++ D+
Sbjct: 412 SRSEVRKILESDPADSKSYVNSLDDDRFVAFRKAFNFDDNGDV-TVPLQAMSESVVDDYA 470
Query: 468 HY--ANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKR 525
Y N+ R + AE N E+ Y+ + TI + E LA+ R
Sbjct: 471 AYYKQNKIRYLEGAE------------LTEATDAANDEITYFREQMATITTASEFLADDR 518
Query: 526 ILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELS 585
+++F LE+KG+D V D L ++F SDL D S+ N DNR+ E++ +FNFD G +S
Sbjct: 519 LVSFALEAKGLDPDDVTSDELEKMFSSDLDDEDSYVNKLDDNRFAELVGAFNFDQDGNIS 578
Query: 586 HKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSK 645
G VQ + +T D Y +E + + + + LALYF+R P I + Y ILGDS
Sbjct: 579 ADPTGTVQQRGDVLETIDAYVRLTLEDDQGDSNTGVRLALYFQRKAPEISSAYNILGDSA 638
Query: 646 LFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
LF+ + LS Y + + K+ ++ I + D D KV+D + AM
Sbjct: 639 LFEFFTTTFNLSSYVSNMDVDKQAEMVDNFIDMKDLSDPDKVDDLIKRFTAM 690
>gi|116248743|ref|YP_764584.1| putative flagella associated protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115253393|emb|CAK11781.1| putative flagella associated protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 727
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 209/712 (29%), Positives = 361/712 (50%), Gaps = 37/712 (5%)
Query: 1 MIPSHVAPFP-SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ ++V+ ++++ + L S V+ V+ + YY+E I ++T+DEF+ D +L+SYA+
Sbjct: 1 MVSTYVSYLTVARNLNASL-SNVASQATVARDSAYYKENIDKVTTVDEFMSDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ F+ K QSD+Q
Sbjct: 60 KAYGLEDMTYAKAFMKKVLESDLSDSSSFANSLSDTRYAEFAAAFKFAGETKTAQSDVQR 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
++ Y++S + + + YF NI I SVD L +L +YVL +F ++ +Y S
Sbjct: 120 DNLLDAYEESFDTEAGDIADATDYFEDNISSITSVDDLLSSSKLKNYVLTAFGLSTEYTS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FLK VLT L + + D + +++ F F DG L+ D ++++ QI + S
Sbjct: 180 SSFLKSVLTSDLDETDSFVNQLDDEVYVNLSKAFNFNEDG-LTDGD-VMSEDQISLVTSA 237
Query: 240 YFNNTIDCVPIVSDQ------NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITA 293
Y + I S + Y+ I +++S + + D KL L+ + + E
Sbjct: 238 Y---AVASATIASSETGEAYDTYFAAQIGNITSVDELMSDDKLVSYLRTAYGLTDSET-- 292
Query: 294 DKFLTLMQENDPIVSQV---KYFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL 348
D F++ ++ I + + NF D + Q Q + +N ++L
Sbjct: 293 DNFISAALKSADIADAIGLSELHDAFNFDEDGALADGDTAQTSEQTAATTAAFDENYEVL 352
Query: 349 -HDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
+ + + +Y + + SID+ L + ++ + P + + AL AY+++ +
Sbjct: 353 IANTDTEDAVDNYTTRIASVTSIDDFLVSNDDDDDDDNDDLPEL-WEMALRAYDIDPDSV 411
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
R ++R +L S+PSD SY N DDR + AFNF+ +G + +P+ ++ D+
Sbjct: 412 SRSEVRKILESDPSDSKSYVNSLDDDRFVAFRKAFNFDDNGDV-TVPLQAMSESVVDDYA 470
Query: 468 HY--ANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKR 525
Y N+ R + E M + + + + Y+ + TI + E LA+ R
Sbjct: 471 TYYKQNKIRYLEGDE------MTEATDAA------DEGITYFREQMATITTASEFLADDR 518
Query: 526 ILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELS 585
+++F+LE+KG+D V D L E+F SDL D S+ N DNR+ E++ +FNFD G +S
Sbjct: 519 LVSFVLEAKGLDPDDVTSDALEEMFASDLDDEDSYVNKLDDNRFAELVGAFNFDQDGNIS 578
Query: 586 HKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSK 645
+ G VQ + +T D Y +E + + + + LALYF+R P I + Y+ILGDS
Sbjct: 579 AEPTGTVQQRGDVLETIDAYVRLTLEDDQGDSNTGVRLALYFQRKAPEISSAYDILGDSA 638
Query: 646 LFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
LF+ + LS Y + + K+ ++ I I D D KV+D + AM
Sbjct: 639 LFEFFTTSFNLSSYVSNMDVDKQAEMIDNFIDIEDLSDPDKVDDLIKRFTAM 690
>gi|300023907|ref|YP_003756518.1| hypothetical protein Hden_2400 [Hyphomicrobium denitrificans ATCC
51888]
gi|299525728|gb|ADJ24197.1| protein of unknown function DUF1217 [Hyphomicrobium denitrificans
ATCC 51888]
Length = 710
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 207/710 (29%), Positives = 325/710 (45%), Gaps = 64/710 (9%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
S+ + VS VS YY I + ++D+F+ + RLFSYA+KA+GL DM++A+ F+K
Sbjct: 16 SRSLARVSGQAEVSSATAYYNANIGKVKSVDDFMNNHRLFSYAMKAYGLEDMTYAKAFMK 75
Query: 76 KILESDLSDP----KSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKT------IIQD 125
K+L SD+S KS V +L ++ FA+++ FS KV + + +I
Sbjct: 76 KVLTSDISTSTNLQKSFVGKLTDPRFLKFAQAFQFSADGKVATQPVTAQQANDQSDLINL 135
Query: 126 YKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKD 185
Y Q +K A ++S Y++ NI + SVD L + RLL+Y L ++ I S +K
Sbjct: 136 YTQQQVNKGATAADDSAYYQANIGNVASVDDLVGNTRLLNYALTAYGIDASIASASAIKQ 195
Query: 186 VLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFN--N 243
VLT L++P F ++ +AE F F DGS++ +D + V Y++
Sbjct: 196 VLTSDLSDPGS-FANQMPGNYKLLAEAFSFNTDGSINGASAQSSD-DVSFTVYRYYDASG 253
Query: 244 TIDCVPIVS-DQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL----- 297
T P + YY+ AI VSS D L + +LF L+ + F L+P + L
Sbjct: 254 TGGSAPAAAFKSQYYQDAIAGVSSVDDLLGNARLFIYLETA-FGLDPSEQSTAILRNVLT 312
Query: 298 ---------TLMQENDPIVSQVKYFFQINFHRDNS-SSTKIQQDSQIQKMLDLYKKNCQI 347
Q ND + F NF+ D S + ++ Q SQ + + N
Sbjct: 313 SDLSDPNSYANQQTNDAYRALAAAF---NFNTDGSINGSEAQTASQTDSTVSSFMTNNTT 369
Query: 348 LHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
+ S I Y+ + KI S+ + + L G F L A+ ++
Sbjct: 370 AVEKYQSSQINFYKTDIAKIASVSDFIK-DTGLYG------------FVLSAFGIDPSKT 416
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
+ + VL S+ S+P SYAN S + KL AFNF+ADG Q ++ +K
Sbjct: 417 SKLTIEKVLESDASNPSSYANMSHNSAYSKLAAAFNFDADGKAKTASSAQVNASLVSTIK 476
Query: 468 HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRIL 527
Y N + AE K + + E YY I TI S +E L NKR++
Sbjct: 477 LY-NSEMGDAKAEKK----------------QTSDEDTYYGNTIGTIKSVDEFLKNKRLV 519
Query: 528 NFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHK 587
F L + + + + D L +I SD DPKSF N +++ Y+ + +FNF G+
Sbjct: 520 TFALTAFDLQDKALSNDTLRKILTSDPTDPKSFINKPENSAYRSMAVAFNFGTDGKDLTT 579
Query: 588 KIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLF 647
+VQ + T D Y Q +E+ +++ LALYF+R P+I + Y IL D L
Sbjct: 580 PTQQVQTRSQMVATTDAYARQTLEENAGDQNEGARLALYFQRLAPSITSAYSILADKALL 639
Query: 648 KVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
+V L L + + ++ K +KI D +D +K++ FL AM
Sbjct: 640 QVAQTALGLPTSMSNADIDVQANMITKKLKIADLQDPEKLKKFLARFSAM 689
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 163/386 (42%), Gaps = 64/386 (16%)
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
D+ + ++ ++ S Y +GK+KS+D+ ++ +A+
Sbjct: 14 DMSRSLARVSGQAEVSSATAYYNANIGKVKSVDDFMNNHR-------------LFSYAMK 60
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPD----SYANKSKDDRLIKLNHAFNFNADGSIGPIP 454
AY L + ++ VLTS+ S S+ K D R +K AF F+ADG + P
Sbjct: 61 AYGLEDMTYAKAFMKKVLTSDISTSTNLQKSFVGKLTDPRFLKFAQAFQFSADGKVATQP 120
Query: 455 MMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVD--YYTLNIN 512
+ AN + + + + TQ+++N + D YY NI
Sbjct: 121 V----------TAQQANDQSDLIN-----------LYTQQQVNKGATAADDSAYYQANIG 159
Query: 513 TIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEI 572
+ S ++L+ N R+LN+ L + GID+ + ++ SDL DP SFAN N YK +
Sbjct: 160 NVASVDDLVGNTRLLNYALTAYGIDASIASASAIKQVLTSDLSDPGSFANQMPGN-YKLL 218
Query: 573 ISSFNFDIHGELSHKKIGKVQD-NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTI 631
+F+F+ G ++ D +F + Y++ + Y++ I
Sbjct: 219 AEAFSFNTDGSINGASAQSSDDVSFTV------YRYYDASGTGGSAPAAAFKSQYYQDAI 272
Query: 632 PNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFL 691
+ + ++LG+++LF + L F + P + IL +++ +D D
Sbjct: 273 AGVSSVDDLLGNARLF------IYLETAFGLDPSEQSTAIL-RNVLTSDLSDPNS----- 320
Query: 692 YAAKAMDHQSIDYKKALFSSPNQNKD 717
YA + Q+ D +AL ++ N N D
Sbjct: 321 YA----NQQTNDAYRALAAAFNFNTD 342
>gi|222085079|ref|YP_002543609.1| hypothetical protein Arad_1171 [Agrobacterium radiobacter K84]
gi|221722527|gb|ACM25683.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 836
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 193/702 (27%), Positives = 318/702 (45%), Gaps = 81/702 (11%)
Query: 30 CEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLV 89
E Y+ + I + T+D+ + + RL +Y L+A+GL + F+K++L SDLSDP S V
Sbjct: 140 TETTYFSQNISSVKTVDDLLGNSRLKNYVLQAYGLDPTYTSNSFLKQMLTSDLSDPDSFV 199
Query: 90 NQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIH 149
NQ S + ++F+ V K A ++ Y+ +I
Sbjct: 200 NQNGSAADKAIVAEFNFNADGTV--------------------KTSTADADTTYYENHIS 239
Query: 150 KINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAM 209
I SV QL D +L +YV +F I P YI+ K + M
Sbjct: 240 TITSVSQLTADPKLFNYVKTAFDI-PAYITATQFNAAAKDASVAATKGLTD-------VM 291
Query: 210 AENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNN------TID-----------CVP--- 249
A+ F FQ DG+++ + T QI Y N T+ VP
Sbjct: 292 AQ-FNFQSDGTVASGSQAQTSAQISATTDAYATNYKGGPQTLGQMADVMSAYNSAVPSYT 350
Query: 250 --IVSDQN--YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDP 305
+ ++ N YYK I S+++ + D +LF ++ + I AD +++
Sbjct: 351 TDVGANDNDLYYKEHIGSITTVDELTSDTRLFDYIKTAY-----GIDADTPAVVLKNAFS 405
Query: 306 IVSQVKYFF------QINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLI 357
S F Q NF D + S Q + I Y KN Q +
Sbjct: 406 SSSTAAIFGLTDVVSQFNFQADGTLASGDTAQSQTAIDAASTAYMKNYQTSQTSLTTKAV 465
Query: 358 KDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLT 417
+YQ + +K+ID+ + + S + Q A+ AY ++ ++ + Q++ +L
Sbjct: 466 SNYQTRIAAVKTIDDFFATNATADSDTSNDSLPELYQMAMRAYGISPDEMTKTQMKKILE 525
Query: 418 SNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKR-SI 476
S+P DP SY N KD R L AFNF++DG + P S+ I V Y++R + +
Sbjct: 526 SDPYDPKSYVNSLKDTRFTNLAKAFNFDSDGKLKPPVQALSQTQINSYVSEYSSRSKIGL 585
Query: 477 HDAE-NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
AE K+ + + T Y+ NI + S +LLA+ ++ +++L++ G
Sbjct: 586 TGAELTKATSDAKDAGT-------------YFATNIVKVTSVTDLLADSKLTDYILKANG 632
Query: 536 IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDN 595
ID + V L + F SD D KSF NT ++K I+++FNFD G L++ K+G Q+
Sbjct: 633 IDPKTVDTATLKKAFASDPSDSKSFINTDDGAQFKSIVNAFNFDTDGNLTNTKLGTAQNQ 692
Query: 596 FHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLK 655
I DT DL+ HQ +E +E E + + LALYF+R P+I + Y+I+GD+ L++V++
Sbjct: 693 GTIADTNDLFLHQTLEDQEGETNTGVQLALYFQRKAPDISSIYDIMGDTALYQVITTTYS 752
Query: 656 LSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
L + + + ++L K + ++D +D KV L AM
Sbjct: 753 LPSSMSSMDVDTQAKLLAKFVDVSDLQDPTKVNKLLQRFSAM 794
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 170/663 (25%), Positives = 283/663 (42%), Gaps = 99/663 (14%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
YY I ++ +D+F+ D +L+SYA++A+GLSDM++A+ F+K++L SDLSD S N+L
Sbjct: 34 YYNANIGKVTNVDDFMGDYQLYSYAMEAYGLSDMTYAKAFMKQVLTSDLSDSTSFANKLT 93
Query: 94 SLKYQYFARSYDFSPPPKVIQSDIQHK-TIIQDYKQSHQHKEEVALEESKYFRKNIHKIN 152
+Y+ FA +++F + +I Y QS + A E+ YF +NI +
Sbjct: 94 DPRYKEFAAAFNFGTGSSSTAQSSTQEDDLIGLYNQSFTTEATNAQTETTYFSQNISSVK 153
Query: 153 SVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAEN 212
+VD L + RL +YVLQ++ + P Y S FLK +LT L++P + ++ +A+
Sbjct: 154 TVDDLLGNSRLKNYVLQAYGLDPTYTSNSFLKQMLTSDLSDPDSFVNQNGSAADKAIVAE 213
Query: 213 FRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLK 272
F F DG T+ +D YY+ I++++S S
Sbjct: 214 FNFNADG------------------------TVKTSTADADTTYYENHISTITSVSQLTA 249
Query: 273 DPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQ--VKYFFQINFHRDNS--SSTKI 328
DPKLF ++ + F + ITA +F ++ ++ Q NF D + S ++
Sbjct: 250 DPKLFNYVK-TAFDIPAYITATQFNAAAKDASVAATKGLTDVMAQFNFQSDGTVASGSQA 308
Query: 329 QQDSQIQKMLDLYKKNC----QIL---------HDDKMQSLIKD---------YQLPLGK 366
Q +QI D Y N Q L ++ + S D Y+ +G
Sbjct: 309 QTSAQISATTDAYATNYKGGPQTLGQMADVMSAYNSAVPSYTTDVGANDNDLYYKEHIGS 368
Query: 367 IKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSY 426
I ++D L S + I + +DA D L+N +S+ +
Sbjct: 369 ITTVDELTSDTRLFD--------YIKTAYGIDA------DTPAVVLKNAFSSSST----- 409
Query: 427 ANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYA-NRKRSIHDAENKSF- 484
+ L + FNF ADG++ QS+ I Y N + S K+
Sbjct: 410 ---AAIFGLTDVVSQFNFQADGTLASGDTAQSQTAIDAASTAYMKNYQTSQTSLTTKAVS 466
Query: 485 NSMEQISTQKRIN--LEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVR 542
N +I+ K I+ N+ D T N S EL + + GI ++
Sbjct: 467 NYQTRIAAVKTIDDFFATNATADSDTSN----DSLPEL------YQMAMRAYGISPDEMT 516
Query: 543 EDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGE-------LSHKKIGKVQDN 595
+ + +I +SD DPKS+ N+ KD R+ + +FNFD G+ LS +I
Sbjct: 517 KTQMKKILESDPYDPKSYVNSLKDTRFTNLAKAFNFDSDGKLKPPVQALSQTQINSYVSE 576
Query: 596 FHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLK 655
+ L ++ + + KD YF I + + ++L DSKL + K
Sbjct: 577 YSSRSKIGLTGAELTKATSDAKDAGT----YFATNIVKVTSVTDLLADSKLTDYILKANG 632
Query: 656 LSP 658
+ P
Sbjct: 633 IDP 635
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 14/175 (8%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
++ Q+++Q + +I DYY NI + + ++ + + ++ ++ +E+ G+ + F
Sbjct: 18 TLNQVASQSQSKRQI----DYYNANIGKVTNVDDFMGDYQLYSYAMEAYGLSDMTYAKAF 73
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ SDL D SFAN D RYKE ++FNF G S + + DD LY
Sbjct: 74 MKQVLTSDLSDSTSFANKLTDPRYKEFAAAFNFGT-GSSSTAQSSTQE-----DDLIGLY 127
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660
+ + YF + I +++ ++LG+S+L V + L P +
Sbjct: 128 NQSFTTEATNAQTETT----YFSQNISSVKTVDDLLGNSRLKNYVLQAYGLDPTY 178
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 103/507 (20%), Positives = 187/507 (36%), Gaps = 98/507 (19%)
Query: 24 KDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLS 83
K + YY I I+++ + D +LF+Y AF + A +F ++ ++
Sbjct: 223 KTSTADADTTYYENHISTITSVSQLTADPKLFNYVKTAFDIPAYITATQFNAAAKDASVA 282
Query: 84 DPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESK- 142
K L + + +Q S Q +YK Q ++A S
Sbjct: 283 ATKGLTDVMAQFNFQSDGTVASGSQAQTSAQISATTDAYATNYKGGPQTLGQMADVMSAY 342
Query: 143 ------------------YFRKNIHKINSVDQLFKDRRLLDYVLQSFSI---TPKYISLP 181
Y++++I I +VD+L D RL DY+ ++ I TP +
Sbjct: 343 NSAVPSYTTDVGANDNDLYYKEHIGSITTVDELTSDTRLFDYIKTAYGIDADTPAVV--- 399
Query: 182 FLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF 241
LK+ + ++ F + F FQ DG+L+ D + I+ + Y
Sbjct: 400 -LKNAFS--SSSTAAIF------GLTDVVSQFNFQADGTLASGDTAQSQTAIDAASTAYM 450
Query: 242 NN-----TIDCVPIVSDQNYYKLAINSVSSFSDFLKD-------------PKLFKMLQLS 283
N T VS+ Y+ I +V + DF P+L++M +
Sbjct: 451 KNYQTSQTSLTTKAVSN---YQTRIAAVKTIDDFFATNATADSDTSNDSLPELYQM-AMR 506
Query: 284 LFPLNPEITADKFLTLMQENDP--------------IVSQVKYFFQINFHRDNSSSTKIQ 329
+ ++P+ + + E+DP + K F NF D +Q
Sbjct: 507 AYGISPDEMTKTQMKKILESDPYDPKSYVNSLKDTRFTNLAKAF---NFDSDGKLKPPVQ 563
Query: 330 QDSQIQ--KMLDLYKKNCQI-LHDDKMQSLIKD-------YQLPLGKIKSIDNLLSGKCQ 379
SQ Q + Y +I L ++ D + + K+ S+ +LL
Sbjct: 564 ALSQTQINSYVSEYSSRSKIGLTGAELTKATSDAKDAGTYFATNIVKVTSVTDLL----- 618
Query: 380 LEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLN 439
A+ + + L A ++ + +D L+ S+PSD S+ N + +
Sbjct: 619 ------ADSKLT--DYILKANGIDPKTVDTATLKKAFASDPSDSKSFINTDDGAQFKSIV 670
Query: 440 HAFNFNADGSI--GPIPMMQSRLTIRD 464
+AFNF+ DG++ + Q++ TI D
Sbjct: 671 NAFNFDTDGNLTNTKLGTAQNQGTIAD 697
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 87/426 (20%), Positives = 156/426 (36%), Gaps = 103/426 (24%)
Query: 255 NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYF- 313
+YY I V++ DF+ D +L+ + + L+ A F+ + +D +S F
Sbjct: 33 DYYNANIGKVTNVDDFMGDYQLYS-YAMEAYGLSDMTYAKAFMKQVLTSD--LSDSTSFA 89
Query: 314 ----------FQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLP 363
F F+ SS+ Q +Q ++ LY ++ Q+ +
Sbjct: 90 NKLTDPRYKEFAAAFNFGTGSSSTAQSSTQEDDLIGLYNQSFTT-EATNAQTETTYFSQN 148
Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDP 423
+ +K++D+LL G +L+ + L AY L+ L+ +LTS+ SDP
Sbjct: 149 ISSVKTVDDLL-GNSRLK------------NYVLQAYGLDPTYTSNSFLKQMLTSDLSDP 195
Query: 424 DSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKS 483
DS+ N++ + FNFNADG++ K S DA+
Sbjct: 196 DSFVNQNGSAADKAIVAEFNFNADGTV----------------------KTSTADADTT- 232
Query: 484 FNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRE 543
YY +I+TI S +L A+ ++ N++ K
Sbjct: 233 ----------------------YYENHISTITSVSQLTADPKLFNYV---------KTAF 261
Query: 544 DFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCD 603
D I + A+ ++++ FNF G ++ + Q + I T D
Sbjct: 262 DIPAYITATQFNAAAKDASVAATKGLTDVMAQFNFQSDGTVASGS--QAQTSAQISATTD 319
Query: 604 LYK-------HQMIEKKEEEKDPNIALA------------LYFKRTIPNIRNHYEILGDS 644
Y + + + N A+ LY+K I +I E+ D+
Sbjct: 320 AYATNYKGGPQTLGQMADVMSAYNSAVPSYTTDVGANDNDLYYKEHIGSITTVDELTSDT 379
Query: 645 KLFKVV 650
+LF +
Sbjct: 380 RLFDYI 385
>gi|307309365|ref|ZP_07589028.1| protein of unknown function DUF1217 [Sinorhizobium meliloti BL225C]
gi|307320101|ref|ZP_07599522.1| protein of unknown function DUF1217 [Sinorhizobium meliloti AK83]
gi|306894316|gb|EFN25081.1| protein of unknown function DUF1217 [Sinorhizobium meliloti AK83]
gi|306900234|gb|EFN30852.1| protein of unknown function DUF1217 [Sinorhizobium meliloti BL225C]
Length = 769
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 199/734 (27%), Positives = 341/734 (46%), Gaps = 96/734 (13%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VS+ IV+ + +YYRE I ++++DEF+ D RL+SYA+KA+GL+DM + F++K+LESD
Sbjct: 22 VSEQTIVARDTQYYRENIGSVASVDEFLADYRLYSYAMKAYGLADMIESVAFMRKVLESD 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEES 141
LSD S N+L +Y+ F ++ FS V Q++ Q +I Y S E EE+
Sbjct: 82 LSDDNSFANKLTDERYRDFTMAFSFSGGTAVSQTEAQLDEMIGLYNTSIASIGETQKEET 141
Query: 142 KYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKY---F 198
+Y+ I K+ SVDQL + RL YV F I S L+ VL+ +P Y
Sbjct: 142 RYYNVMIDKVTSVDQLLNNDRLRTYVFTVFGIDESTYSRETLRKVLSSNADDPDSYENTV 201
Query: 199 IESR-----------------------------------------DNRFRAMAENFRFQP 217
+E R + + AMA F+F+
Sbjct: 202 LEPRLSELEAARADAQAKLQQSGTTQAEKLELQAKIATYNKSISTVSNYLAMAAAFQFEA 261
Query: 218 DGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS--DQNYYKLAINSVSSFSDFLKDPK 275
DG+++ T + + Y ++ P + ++ Y++ I S+++ S+ + D +
Sbjct: 262 DGTVAA-GSAQTAAHKKTMNELYVSSNSRVTPQAALLNKAYFEEKIASITTVSELVADTR 320
Query: 276 L-------FKMLQLSLFPLNPE--ITAD-----KFL-TLMQENDPIVSQVKYFFQINFHR 320
L F + ++++ P + +T+D ++ T+ + N+ + + F NF
Sbjct: 321 LYNYIRTAFDLNEVTIVPATIKNILTSDPDDPNSYINTIGKGNENYKALARAF---NFQA 377
Query: 321 DNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKC 378
D + + Q Q Y D + I Y+L + K+ S+ + +
Sbjct: 378 DGTLAAGDAAQTAEQTTLTSSRYMTRYNDKDDAADEKAIGAYKLAVEKMTSVSDFI---- 433
Query: 379 QLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKL 438
E FAL A L+ ++ VLTS+ +DP+S+ KD+R +KL
Sbjct: 434 ---------ETASIYDFALQAVGLDPDSESARTIKRVLTSDLTDPESFVYTLKDERYLKL 484
Query: 439 NHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINL 498
FNF G IG + QS I++ K Y K E+K+
Sbjct: 485 AQLFNFTTSGDIGVPALAQSETLIQETAKTYIVNKSRFGSEEDKT--------------- 529
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
+ +E +YYT + + S +E LA+ R+++F LE+ GID + V DFL +IF SDL DPK
Sbjct: 530 KAEAEAEYYTAEVAKLSSLDEFLADSRLVDFALEANGIDPENVTLDFLRDIFTSDLDDPK 589
Query: 559 SFANTYKD-NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEK 617
SF N ++ Y +++SFNFD G + + + + +T D Y HQ +E++ E
Sbjct: 590 SFINQQQNSGAYIALVTSFNFDSGGNVLREDKSVIITRQGLYETLDRYLHQSLEEQAGED 649
Query: 618 DPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIK 677
+ + LALYF+R ++ + Y++L D L +V L F+ + ++ +I++K++
Sbjct: 650 NAGVRLALYFERQAGSLVDAYDLLADDALAEVFRTIFSLPDEFSSMDIDQQAKIVEKNLD 709
Query: 678 INDFKDSKKVEDFL 691
+ D +++ L
Sbjct: 710 LEKLSDPAELKKLL 723
>gi|15964619|ref|NP_384972.1| hypothetical protein SMc00986 [Sinorhizobium meliloti 1021]
gi|15073797|emb|CAC45438.1| Hypothetical protein SMc00986 [Sinorhizobium meliloti 1021]
Length = 769
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 199/734 (27%), Positives = 338/734 (46%), Gaps = 96/734 (13%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VS+ IV+ + +YYRE I ++++DEF+ D RL SYA+KA+GL+DM + F++K+LESD
Sbjct: 22 VSEQTIVARDTQYYRENIGSVASVDEFLADYRLHSYAMKAYGLADMIESVAFMRKVLESD 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEES 141
LSD S N+L +Y+ F ++ FS V Q++ Q +I Y S E EE+
Sbjct: 82 LSDDNSFANKLTDERYRDFTMAFSFSGGTAVSQTEAQLDEMIGLYNTSIASIGETQKEET 141
Query: 142 KYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKY---F 198
+Y+ I K+ SVDQL + RL YV F I S L+ VL+ +P Y
Sbjct: 142 RYYNVMIDKVTSVDQLLNNDRLRTYVFTVFGIDESTYSRETLRKVLSSNADDPDSYENTV 201
Query: 199 IESR-----------------------------------------DNRFRAMAENFRFQP 217
+E R + + AMA F+F+
Sbjct: 202 LEPRLSELEAARADAQAKLQQSGTTQAEKLELQAKIATYNKSISTVSNYLAMAAAFQFEA 261
Query: 218 DGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNY--YKLAINSVSSFSDFLKDPK 275
DG+++ T + + Y ++ P + N ++ I S+++ S+ + D +
Sbjct: 262 DGTVAA-GSAQTAAHKKTMNELYVSSNSRVTPQAALLNKADFEEKIASITTVSELVADTR 320
Query: 276 L-------FKMLQLSLFPLNPE--ITAD-----KFL-TLMQENDPIVSQVKYFFQINFHR 320
L F + ++++ P + +T+D ++ T+ + N+ + + F NF
Sbjct: 321 LYNYIRTAFDLNEVTIVPATIKNILTSDPDDPNSYINTIGKGNENYKALARAF---NFQA 377
Query: 321 DNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKC 378
D + + Q Q Y D + I Y+L + K+ S+ + +
Sbjct: 378 DGTLAAGDAAQTAEQTTLTSSRYMTRYNDKDDAADEKAIGAYKLAVEKMTSVSDFI---- 433
Query: 379 QLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKL 438
E FAL A L+ ++ VLTS+ +DP+S+ KD+R +KL
Sbjct: 434 ---------ETASIYDFALQAVGLDPDSESARTIKRVLTSDLTDPESFVYTLKDERYLKL 484
Query: 439 NHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINL 498
FNF G IG + QS I++ K Y K E+K+
Sbjct: 485 AQLFNFTTSGDIGVPALAQSETLIQETAKTYIVNKSRFGSEEDKT--------------- 529
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
+ +E +YYT + + S +E LA+ R+++F LE+ GID + V DFL +IF SDL DPK
Sbjct: 530 KAEAEAEYYTAEVAKLSSLDEFLADSRLVDFALEANGIDPENVTLDFLRDIFTSDLDDPK 589
Query: 559 SFANTYKD-NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEK 617
SF N ++ Y +++SFNFD G + + + + +T D Y HQ +E++ E
Sbjct: 590 SFINQQQNSGAYIALVTSFNFDSGGNVLREDKSVIITRQGLYETLDRYLHQSLEEQAGED 649
Query: 618 DPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIK 677
+ + LALYF+R ++ + Y++L D L +V L F+ + ++ +I++K++
Sbjct: 650 NAGVRLALYFERQAGSLVDAYDLLADDALAEVFRTIFSLPDEFSSMDIDQQAKIVEKNLD 709
Query: 678 INDFKDSKKVEDFL 691
+ D +++ L
Sbjct: 710 LEKLSDPAELKKLL 723
>gi|90420304|ref|ZP_01228212.1| putative IMP dehydrogenase/GMP reductase [Aurantimonas
manganoxydans SI85-9A1]
gi|90335638|gb|EAS49388.1| putative IMP dehydrogenase/GMP reductase [Aurantimonas
manganoxydans SI85-9A1]
Length = 725
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 193/699 (27%), Positives = 319/699 (45%), Gaps = 64/699 (9%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
++ DP+V E YYR I +STIDEF+ D RL+SYA+KA GL + ++ IKK+LESD
Sbjct: 32 IAADPVVKREAEYYRTNIHSVSTIDEFMADYRLYSYAMKAHGLEEQIGSKALIKKVLESD 91
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDF----SPPPKVIQSDIQHKTIIQDYKQSHQHKEEVA 137
LSD KSL N+L+ +Y+ FA+++ F PP V Q+ Q +++ Y +V
Sbjct: 92 LSDSKSLANKLSDERYRTFAKAFSFINTAEPPVLVAQTVGQTDLVVEAYSDYRTRAGQVH 151
Query: 138 LEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKY 197
+K + I I++VD+ L + L S I P S F++DVLT N
Sbjct: 152 ATAAKAYMDGIGAISNVDEFLNSTHLFNVSLASVGIDPSIASRSFIRDVLT---GNAADG 208
Query: 198 FIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNN---TIDCVPIVSDQ 254
+ DNR+ +A F+PDGS+ + ++ + V YF
Sbjct: 209 PAANGDNRYADLAAMLAFEPDGSIPA-GGLQSEKEANNTVFEYFAKKGLATSEQAAAYQV 267
Query: 255 NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPE--------ITAD-----KFLTLMQ 301
+YY+ I + + + + DP+LF + S+ + E IT+D L M
Sbjct: 268 SYYESEIAKIRTADELVNDPRLFGIALSSVGLSDSEMPSYAWTLITSDPDDPNSDLNQMP 327
Query: 302 ENDP--IVSQVKY-FFQINFHRDNSSSTKI----QQDSQIQKMLDLYKKN--CQILHDDK 352
E+ P + + KY F+ D + + Q D+ + +D Y N +DK
Sbjct: 328 EDTPASLARKEKYKLLNERFNFDTQGNLPVGEPAQSDAAREATVDGYFANYRTATAGNDK 387
Query: 353 MQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQL 412
+ + + +++ + + ++ +S +AL A+ L+ R +
Sbjct: 388 IATSL--FRVAVSGMSTVRQFVSSSA-------------VYDYALKAFGLDPATESRSSI 432
Query: 413 RNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANR 472
VL S+PSDP SYAN +DR +KL AFNF+ G I + Q+ D YA
Sbjct: 433 MRVLRSDPSDPSSYANSLNNDRYVKLAAAFNFDDSGKIAAQRIAQTEANQIDTATRYAG- 491
Query: 473 KRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLE 532
SF + K I + Y + +I S + ++NK ++NF L+
Sbjct: 492 ----------SFGDTPTTAESKAITEATTA----YKKALLSIVSVNDFVSNKTVVNFALK 537
Query: 533 SKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKV 592
+ G+++ ++ + L I SD DP+SF N D R E +++ F G + + + ++
Sbjct: 538 AYGLEADRLSQKDLVSILTSDPSDPESFVNKSGDRRLIEFAAAYAFTPDGGI-ERGVHEI 596
Query: 593 QDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSK 652
Q T D Y Q +E++ + ++ LALYF+R P + + YEIL D L VV
Sbjct: 597 QSASDFLSTQDFYLRQTMEEEAGADNESVRLALYFRRLAPELTSIYEILADPALLTVVQT 656
Query: 653 KLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFL 691
+ L + + R ++K + + KD K +E F+
Sbjct: 657 AVGLPAESSQSNLDLQKRTIEKKLDLETLKDPKGLERFI 695
>gi|227821060|ref|YP_002825030.1| putative flagella associated protein [Sinorhizobium fredii NGR234]
gi|227340059|gb|ACP24277.1| putative flagella associated protein [Sinorhizobium fredii NGR234]
Length = 769
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 192/735 (26%), Positives = 335/735 (45%), Gaps = 98/735 (13%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VS+ +V+ + +YY+E I ++S++D F+ D RL+SYA+ AFGL DM + F++K+LESD
Sbjct: 22 VSEQTVVARDTQYYKENIGNVSSVDAFLDDYRLYSYAMTAFGLGDMIDSVAFMRKVLESD 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEES 141
LSD S N L +Y+ FA +Y FS V Q++ Q II Y S + E EE+
Sbjct: 82 LSDTSSFANSLTDDRYREFALAYSFSGATAVSQTEAQLDEIIGLYDTSILNIAETQEEET 141
Query: 142 KYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTL------------ 189
+Y+ I KI SVDQL + RL YV +F + S ++ VL+
Sbjct: 142 RYYNVMIDKITSVDQLLNNDRLRAYVFTAFGVDESTYSRQTIRSVLSSSSGDASSYENTV 201
Query: 190 ----------------------GLANPKKYFIESRD----------NRFRAMAENFRFQP 217
GL + ++ +ES+ N + +A F F
Sbjct: 202 IAPKLSELETAKAAAEAQLTAGGLTDEEEAELESKITTYANSIATLNNYIDLAAAFDFNS 261
Query: 218 DGSLSKRDKILTDMQIEKIVSNYF--NNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPK 275
DG+++ TD E Y N+ + + ++ Y++ I S+++ ++ L D +
Sbjct: 262 DGTVTA-GAAQTDENKETTNELYISSNSRVTSQAALLNKAYFEETIASITTVTELLADTR 320
Query: 276 LFKMLQLSLFPLNPEITA----------------DKFLTLMQENDPIVSQVKYFFQINFH 319
L+ ++ + F L+ E+T D ++ + D + F NF
Sbjct: 321 LYNYIRTA-FDLD-EVTIVSATIKNILTSDPDDPDSYVNTIGGGDANYLALANAF--NFQ 376
Query: 320 RDNSSSTKIQQDSQIQKML--DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGK 377
D + + + Q L + Y D+ + + Y+ + + S+D+ + G
Sbjct: 377 EDGTLAVGDSAQTAAQTTLTSNRYMTRYNDKDDEADEKAVSAYKTAVASMTSVDDFI-GS 435
Query: 378 CQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIK 437
+ FAL A L+ ++ VLTS+ +DP SY KD+R +
Sbjct: 436 ASI------------YDFALKAVGLDPDTASTRTIKRVLTSDLTDPKSYVYSLKDERYVT 483
Query: 438 LNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRIN 497
L FNF +G IGP + QS I++ K++ K ++K+
Sbjct: 484 LAKLFNFTTEGEIGPPALAQSETQIQETAKNHIVIKSRFGSEDDKT-------------- 529
Query: 498 LEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDP 557
+ E +YYT + + S +E LA+ R++ LE+ GID + V D L +IF SDL DP
Sbjct: 530 -KAQEESEYYTAGVAKLSSLDEFLADDRLVTIALEANGIDPEGVTADVLRQIFNSDLDDP 588
Query: 558 KSFANTYKDNR-YKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEE 616
+S N +++ Y +++SFNFD G + + + + +T D Y Q +E++ E
Sbjct: 589 ESVINEQENSAAYVSLVTSFNFDSEGNVLREDRDSIVTRQGLYETLDQYLRQTLEEQAGE 648
Query: 617 KDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI 676
+ + LALYF+R ++ + Y++L D L +V L F+ + ++ +I++K++
Sbjct: 649 SNEGVRLALYFERKAGSLVDAYDLLADDALAEVFRTIFSLPDEFSTMDIDQQAKIVEKNL 708
Query: 677 KINDFKDSKKVEDFL 691
+ D +++ L
Sbjct: 709 DLEKLSDPAELKKLL 723
>gi|27379820|ref|NP_771349.1| hypothetical protein blr4709 [Bradyrhizobium japonicum USDA 110]
gi|27352973|dbj|BAC49974.1| blr4709 [Bradyrhizobium japonicum USDA 110]
Length = 687
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 202/715 (28%), Positives = 329/715 (46%), Gaps = 79/715 (11%)
Query: 28 VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKS 87
V+ E YY+ I + T+D+ +KD RL+ YALKA+GL DM++A+ F++K+LESDLSD KS
Sbjct: 28 VAREAAYYKANIGKVKTVDDLMKDYRLYHYALKAYGLEDMAYAKAFMRKVLESDLSDAKS 87
Query: 88 LVNQLNSLKYQYFARSYDFSPPPK-VIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRK 146
VN+L +Y+ FA ++ F+ V QS+ Q I Y + + + + +++KY+
Sbjct: 88 FVNKLVDKRYREFAAAFSFNGTATPVAQSENQTDETIGLYTATKKSQVDALADDTKYYSA 147
Query: 147 NIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRF 206
I I+S DQL + RL +YV +F I + VL ++P Y + ++
Sbjct: 148 QIGSISSADQLLNNDRLRNYVYSAFGIDQSKWPPDTISQVLRSDPSDPNSYVNTAFASQL 207
Query: 207 RAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDC----VPIVSDQNYYKLAIN 262
+ + +K D T+ +I + D V I+ ++ + +
Sbjct: 208 TGLNAQL------AQAKSDVSATNTKIADYTAQLSQPGADVAQLNVQILVEKYHLESYTK 261
Query: 263 SVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHR-D 321
S+SS +D + F L + E +AD L + +Q + R D
Sbjct: 262 SISSLNDQIATIGGFVDLAGAF-----EFSADGSLP-----SGVPAQTAANVTLTTKRFD 311
Query: 322 NSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKD---YQLPLGKIKSIDNLLSGKC 378
+S S S + + + I D +Q+ + Y LG +
Sbjct: 312 DSKSDVYAAASPLNEAFATVQFRNAIGKIDSVQAFVSTPAVYDFALGAV----------- 360
Query: 379 QLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKL 438
G + AE T++ AL+ S+ SDP S+ KD+R ++L
Sbjct: 361 ---GLDPAEVSQATVKAALE-------------------SDLSDPKSFVYTLKDNRYVEL 398
Query: 439 NHAFNFNADGSIGPIPMMQSRLTIRDNVKHY--ANRKRSIHDAENKSFNSMEQISTQKRI 496
AFNF+A+G++ + Q + K Y A K++ S EQ QK +
Sbjct: 399 ARAFNFDANGNLTTPLVAQDSAKVLQTAKDYVIAVLKQA----------SPEQ---QKAV 445
Query: 497 NLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKD 556
+ + Y I I S ELLAN+++++F+L +KG+D +KV ++L +IF SDL +
Sbjct: 446 REQAQKDATSYQEAIAGIDSVSELLANRKMVDFILVAKGLDPKKVSTEYLKKIFASDLNN 505
Query: 557 PKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEE 616
PKSFANT D+R+ EI +SFNFD ++ + Q + +T Y Q +E+++ +
Sbjct: 506 PKSFANTESDHRFAEIAASFNFDSKDNVARLAMVGPQKQVQLRETQANYLQQSLEQQQGD 565
Query: 617 KDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI 676
+P + LALYF+R I + Y+IL D L +V L A +P ++ + + K +
Sbjct: 566 TNPGVRLALYFQRKAGEITSAYDILADKALSEVFRTTFNLPDSMAAMPIDQQAKFVDKFM 625
Query: 677 KINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQNNVS 731
KI D D KVE L AM D K S Q + P N F + +S
Sbjct: 626 KIKDLSDPAKVEKLLGRFSAM----YDVKNG--QSIGQGQSPLLNLFQGSGSGLS 674
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 58/256 (22%)
Query: 310 VKYFFQINF--HRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKI 367
V +F N+ H S T+++Q + + + YK N +GK+
Sbjct: 2 VSTYFSYNYISHHLKQSLTRVEQQTDVAREAAYYKAN-------------------IGKV 42
Query: 368 KSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYA 427
K++D+L+ + +AL AY L + +R VL S+ SD S+
Sbjct: 43 KTVDDLM-------------KDYRLYHYALKAYGLEDMAYAKAFMRKVLESDLSDAKSFV 89
Query: 428 NKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSM 487
NK D R + AF+FN + P+ QS + + Y K+S DA
Sbjct: 90 NKLVDKRYREFAAAFSFNGTAT----PVAQSENQTDETIGLYTATKKSQVDA-------- 137
Query: 488 EQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLC 547
+ + YY+ I +I S ++LL N R+ N++ + GID K D +
Sbjct: 138 ------------LADDTKYYSAQIGSISSADQLLNNDRLRNYVYSAFGIDQSKWPPDTIS 185
Query: 548 EIFKSDLKDPKSFANT 563
++ +SD DP S+ NT
Sbjct: 186 QVLRSDPSDPNSYVNT 201
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 107/492 (21%), Positives = 189/492 (38%), Gaps = 103/492 (20%)
Query: 18 LFSTVSKDPI--VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
L++ K + ++ + +YY +I IS+ D+ + + RL +Y AFG+ I
Sbjct: 126 LYTATKKSQVDALADDTKYYSAQIGSISSADQLLNNDRLRNYVYSAFGIDQSKWPPDTIS 185
Query: 76 KILESDLSDPKSLVN-----QLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDY-KQS 129
++L SD SDP S VN QL L Q D S T I DY Q
Sbjct: 186 QVLRSDPSDPNSYVNTAFASQLTGLNAQLAQAKSDVSAT----------NTKIADYTAQL 235
Query: 130 HQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKD-VLT 188
Q +VA + N+ Q+ ++ Y L+S++ S+ L D + T
Sbjct: 236 SQPGADVA-------QLNV-------QILVEK----YHLESYT-----KSISSLNDQIAT 272
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
+G F +A F F DGSL T + + ++ D
Sbjct: 273 IG--------------GFVDLAGAFEFSADGSLPSGVPAQTAANVTLTTKRFDDSKSDVY 318
Query: 249 PIVSDQN------YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
S N ++ AI + S F+ P ++ L L+P + + E
Sbjct: 319 AAASPLNEAFATVQFRNAIGKIDSVQAFVSTPAVYD-FALGAVGLDPAEVSQATVKAALE 377
Query: 303 NDPIVSQVKYFF-------------QINFHRDNSSSTK-IQQDSQ---------IQKMLD 339
+D +S K F NF + + +T + QDS + +L
Sbjct: 378 SD--LSDPKSFVYTLKDNRYVELARAFNFDANGNLTTPLVAQDSAKVLQTAKDYVIAVLK 435
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
Q ++ Q YQ + I S+ LL+ + ++ F L A
Sbjct: 436 QASPEQQKAVREQAQKDATSYQEAIAGIDSVSELLANRKMVD-------------FILVA 482
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM--Q 457
L+ + + + L+ + S+ ++P S+AN D R ++ +FNF++ ++ + M+ Q
Sbjct: 483 KGLDPKKVSTEYLKKIFASDLNNPKSFANTESDHRFAEIAASFNFDSKDNVARLAMVGPQ 542
Query: 458 SRLTIRDNVKHY 469
++ +R+ +Y
Sbjct: 543 KQVQLRETQANY 554
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 10/160 (6%)
Query: 487 MEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFL 546
++Q T+ ++ E YY NI + + ++L+ + R+ ++ L++ G++ + F+
Sbjct: 15 LKQSLTRVEQQTDVAREAAYYKANIGKVKTVDDLMKDYRLYHYALKAYGLEDMAYAKAFM 74
Query: 547 CEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
++ +SDL D KSF N D RY+E ++F+F+ Q D+T LY
Sbjct: 75 RKVLESDLSDAKSFVNKLVDKRYREFAAAFSFN------GTATPVAQSENQTDETIGLY- 127
Query: 607 HQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKL 646
K+ + D Y+ I +I + ++L + +L
Sbjct: 128 ---TATKKSQVDALADDTKYYSAQIGSISSADQLLNNDRL 164
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLG 190
+ + +VA E+ Y++ NI K+ +VD L KD RL Y L+++ + + F++ VL
Sbjct: 23 EQQTDVA-REAAYYKANIGKVKTVDDLMKDYRLYHYALKAYGLEDMAYAKAFMRKVLESD 81
Query: 191 LANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPI 250
L++ K + + D R+R A F F + + + TD I + + + +D +
Sbjct: 82 LSDAKSFVNKLVDKRYREFAAAFSFNGTATPVAQSENQTDETI-GLYTATKKSQVDA--L 138
Query: 251 VSDQNYYKLAINSVSSFSDFLKDPKL 276
D YY I S+SS L + +L
Sbjct: 139 ADDTKYYSAQIGSISSADQLLNNDRL 164
>gi|150395704|ref|YP_001326171.1| hypothetical protein Smed_0479 [Sinorhizobium medicae WSM419]
gi|150027219|gb|ABR59336.1| protein of unknown function DUF1217 [Sinorhizobium medicae WSM419]
Length = 822
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 193/737 (26%), Positives = 331/737 (44%), Gaps = 102/737 (13%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VS+ IV+ + +YYRE I ++++D F+ D RL+SYA+KA+GL DM + F++K+LESD
Sbjct: 75 VSEQTIVARDTQYYRENIASVASVDAFLADYRLYSYAMKAYGLGDMIDSVAFMRKVLESD 134
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEES 141
L+D S N+L +Y+ FA ++ FS V Q++ Q +I Y S E EE+
Sbjct: 135 LADDNSFANKLTDERYREFAMAFSFSGGTAVSQTEAQLDEMIGLYNTSIASIGETQKEET 194
Query: 142 KYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKY---F 198
+Y+ + K+ SVDQL + RL Y+ F I S L++VL+ +P Y
Sbjct: 195 RYYNLMVDKVTSVDQLLNNDRLRAYIFTVFGIDESTYSRETLRNVLSSNADDPDSYENTV 254
Query: 199 IESRDNRFR-----------------------------------------AMAENFRFQP 217
+E R + AMA F+F
Sbjct: 255 LEPRLTELQTARADAQAKLQQSGTTQAEKLELQAKIATYNKSISTVSNYLAMAAAFQFSA 314
Query: 218 DGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS--DQNYYKLAINSVSSFSDFLKDPK 275
DG+++ T + + Y ++ P + ++ Y++ I S+++ S+ + D +
Sbjct: 315 DGTVAA-GSAQTAAHKKTMNELYVSSNPRITPQAALLNKAYFEEKIASITNVSELVADTR 373
Query: 276 LFKMLQLSLFPLNPEITA----------------DKFL-TLMQENDPIVSQVKYFFQINF 318
++ ++ + F LN E+T D ++ T+ + N+ + + F NF
Sbjct: 374 IYNYIRTA-FDLN-EVTIVPATIKNILTSDPDDPDSYINTIGKGNENYKALARAF---NF 428
Query: 319 HRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSG 376
D + + Q Q Y D + I Y+L + K+ S+ + +
Sbjct: 429 QADGTLAAGDAAQTAEQTTLTSSRYMTRYNDKDDAADEKAIGAYKLAVEKMVSVGDFI-- 486
Query: 377 KCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLI 436
E FAL A L+ ++ VL S+ +DP S+ KD+R +
Sbjct: 487 -----------ETASIYDFALKAVGLDPDAESTRTIKRVLMSDLTDPGSFVYTLKDERYL 535
Query: 437 KLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHY-ANRKRSIHDAENKSFNSMEQISTQKR 495
KL FNF G IG + Q I++ K Y N+ R F S E + +
Sbjct: 536 KLAQLFNFTTSGDIGVPALAQPETLIQETAKTYIVNKSR---------FGSEEDKAEAEA 586
Query: 496 INLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLK 555
+EV + S + LA+ R++ F LE+ GID + V DFL EIF SDL
Sbjct: 587 EAEYYTAEV-------AKLASLDAFLADSRLVAFALEANGIDPENVTIDFLREIFTSDLD 639
Query: 556 DPKSFANTYKD-NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKE 614
DPKSF N ++ Y +++S+NFD G + + + + +T D Y HQ +E++
Sbjct: 640 DPKSFINQQQNSGSYIALVTSYNFDRSGNILREDKSVIITRQGLYETFDRYLHQTLEEQA 699
Query: 615 EEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKK 674
E + + LALYF+R ++ + Y++L D L +V L F+ + ++ +I++K
Sbjct: 700 GEDNAGVRLALYFERQAGSLVDAYDLLADDALAEVFRTIFSLPDEFSSMDIDQQAKIVEK 759
Query: 675 HIKINDFKDSKKVEDFL 691
++ + + +++ L
Sbjct: 760 NLDLEKLSEPAELKKLL 776
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 111 KVIQSDIQHKTIIQDYKQSHQHKEE--VALEESKYFRKNIHKINSVDQLFKDRRLLDYVL 168
+++ + + + I +D K S + E + +++Y+R+NI + SVD D RL Y +
Sbjct: 53 RMVSTYLDYNLIARDMKLSLRRVSEQTIVARDTQYYRENIASVASVDAFLADYRLYSYAM 112
Query: 169 QSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKIL 228
+++ + S+ F++ VL LA+ + + D R+R A F F ++S+
Sbjct: 113 KAYGLGDMIDSVAFMRKVLESDLADDNSFANKLTDERYREFAMAFSFSGGTAVSQ----- 167
Query: 229 TDMQIEKIVSNYFNNTIDCVPIV--SDQNYYKLAINSVSSFSDFLKDPKL 276
T+ Q+++++ Y N +I + + YY L ++ V+S L + +L
Sbjct: 168 TEAQLDEMIGLY-NTSIASIGETQKEETRYYNLMVDKVTSVDQLLNNDRL 216
>gi|190890609|ref|YP_001977151.1| hypothetical protein RHECIAT_CH0000988 [Rhizobium etli CIAT 652]
gi|190695888|gb|ACE89973.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 1111
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 174/671 (25%), Positives = 300/671 (44%), Gaps = 124/671 (18%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
MI + +A SKD+ S L + V+ V + +YY + I + +D+F+ D +L+SYA+
Sbjct: 1 MITASLAYSILSKDMTSSL-NKVASQATVKKDAQYYADHINKVKDVDDFLGDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 60 KAYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPDKDVQTDAQE 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I YKQS ++ A ES Y+ NI + +VD L + RL YVL++F I P Y S
Sbjct: 120 DDLIGLYKQSFVDADKAAAAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYAS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FL+ VLT L++P ++++A+A F F DG+++ + T Q +
Sbjct: 180 KDFLRQVLTSDLSDPASVVNTQGGDKYKALAAQFSFNADGTVTGTAQ--TAAQKASAIET 237
Query: 240 YFNNTIDCV---PIVSD------------QNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Y N+ + + SD Q YY I ++++ D + D +L ++ +
Sbjct: 238 YTLNSQSVIIDNAVGSDVVYVSKTAADYNQAYYTAKIGTITNVDDLVADARLTSYIK-TA 296
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYFFQI----NFHRDNSSST--KIQQDSQIQKML 338
+ + + TA ++ DP +Q+ F + NF D S+ST + Q Q K+
Sbjct: 297 YSMGADFTAPALRMVL--TDPSYAQLMGFTNVYNAFNFKSDGSTSTTARAQTIDQANKLA 354
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
S I ++D+LL+ + ++ D
Sbjct: 355 SAASSTANYYSVTSQSS----------GITNVDDLLADS-------------VMARYIKD 391
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
AY L + + +L+N+LT + SYA LN FNFNADGS
Sbjct: 392 AYGLGV-NFSNAELKNILTDS-----SYAAAQGQ---AGLNADFNFNADGS--------- 433
Query: 459 RLTIRDNVKHYANRKRSIHD--AENKS-FNSMEQISTQKRINLEINSEVDYYTLNINTIH 515
I +V A +++S D A N + FN+M I ++
Sbjct: 434 ---INGSVIQTAAQRKSTTDKSAANAAHFNAM-----------------------IGSVT 467
Query: 516 SFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISS 575
+ ++++++ +++L S ++ + ++ L DP + + Y ++
Sbjct: 468 NVDDIMSDPVAVSYLRT-----SMQIADSVSDATLRTFLVDPAAASA----QGYSDVHDL 518
Query: 576 FNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIR 635
FNF G ++ LY Q + + A+Y++ TI I
Sbjct: 519 FNFKTDGSVAT-----------------LYATQTAAQSANTTSKADSAAVYYQSTIAGIS 561
Query: 636 NHYEILGDSKL 646
N ++L D KL
Sbjct: 562 NVDQLLADQKL 572
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 167/685 (24%), Positives = 305/685 (44%), Gaps = 66/685 (9%)
Query: 29 SCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSL 88
+ ++ I ++ +D+ + D SY L+ + M A+ L + L DP +
Sbjct: 453 AANAAHFNAMIGSVTNVDDIMSDPVAVSY-LR----TSMQIADSVSDATLRTFLVDPAAA 507
Query: 89 VNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNI 148
Q S + F D S + Q QS + A + Y++ I
Sbjct: 508 SAQGYSDVHDLFNFKTDGS---------VATLYATQTAAQSANTTSK-ADSAAVYYQSTI 557
Query: 149 HKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRA 208
I++VDQL D++L ++V ++ I P ++ L+++LT +S +
Sbjct: 558 AGISNVDQLLADQKLNNFVRNAYGI-PATVTDVDLRNILT----------DQSGTGTYAN 606
Query: 209 MAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFS 268
+A F F+ DGSL D + S N I D Y + ++++
Sbjct: 607 VAAAFNFKADGSLE-------DGLAAQTSSQTTNTKIAAGARTDD---YSSRMATIANVD 656
Query: 269 DFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQ--INFHRDNS--S 324
+ + DP + L+ S + L +I+ + +++ + + NF D S +
Sbjct: 657 ELIADPAITNFLK-STYNLPFDISDAELKSILTDATAAAAAGHADLNADFNFAADGSLPA 715
Query: 325 STKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQ---------LPLGKIKSIDNLLS 375
+ +Q Q Q D Y D+ ++ + +Y L +IK++++ L
Sbjct: 716 VSSVQTADQAQTTNDNYMARYDDERDEAIEEVADNYSSMMADSTSLLDTAEIKTVNDFLR 775
Query: 376 GKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRL 435
+ S ++ AL A+ L Q++ R +R +LTS+ DP+ Y KD+R+
Sbjct: 776 TNAAADFKKSNDKLPDPYHVALQAFGLTDQEVPRSMMRKILTSDAYDPNGYIASLKDERI 835
Query: 436 IKLNHAFNFNADG-SIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSM--EQIST 492
L AFNF DG + P+ + + YA + K+ +M +
Sbjct: 836 TNLARAFNFGPDGKAAAPLQALPDA-----TLAKYAT--------DYKAHVTMLLKAGPV 882
Query: 493 QKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKS 552
+ + + + +EVDY+ + + S ++ LA+ R+ + +L++ +D + + L +IF S
Sbjct: 883 KDKASKDATTEVDYFAKGMAKVQSLDDFLADSRLTDLVLKANNLDPKDYDKATLKKIFTS 942
Query: 553 DLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEK 612
D D KS+ NT D R+K+I+++FNFD G L+ KIG +Q+ T DLY Q +E
Sbjct: 943 DPDDKKSYLNTKADARFKDIVAAFNFDKDGNLTRAKIGAIQNKAAEAHTQDLYVKQTLET 1002
Query: 613 KEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRIL 672
++ E + + LALYF R P+I + Y ILGD L++V++ L + + K+ ++
Sbjct: 1003 QQGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVAKQADLI 1062
Query: 673 KKHIKINDFKDSKKVEDFLYAAKAM 697
+ +K+ D +D KKV+ L AM
Sbjct: 1063 NRFVKLEDLQDPKKVDKLLRRFTAM 1087
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+S+ ++++Q + + YY +IN + ++ L + ++ ++ +++ G++ +
Sbjct: 17 SSLNKVASQA----TVKKDAQYYADHINKVKDVDDFLGDYKLYSYAMKAYGLEDMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ +SDL DP S+AN D RY+E ++FNF+ + VQ + DD L
Sbjct: 73 FMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPDK-------DVQTDAQEDDLIGL 125
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFA 661
YK ++ + A + Y+ I +++ +++ +++L V K K+ P +A
Sbjct: 126 YKQSFVDADKAAA----AESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYA 178
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
SKD + E Y+ + + + ++D+F+ D RL LKA L + + +KKI SD
Sbjct: 886 ASKD--ATTEVDYFAKGMAKVQSLDDFLADSRLTDLVLKANNLDPKDYDKATLKKIFTSD 943
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS---DIQHKTI--------IQDYKQSH 130
D KS +N +++ +++F + ++ IQ+K ++ ++
Sbjct: 944 PDDKKSYLNTKADARFKDIVAAFNFDKDGNLTRAKIGAIQNKAAEAHTQDLYVKQTLETQ 1003
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
Q + + + YF + I S+ + D+ L + ++S+ + S+ K
Sbjct: 1004 QGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVAK 1057
>gi|218674013|ref|ZP_03523682.1| hypothetical protein RetlG_21992 [Rhizobium etli GR56]
Length = 993
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 170/669 (25%), Positives = 305/669 (45%), Gaps = 120/669 (17%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
MI + +A SKD+ S L + V+ V + +YY + I ++++D+F+ D +L+SYA+
Sbjct: 1 MITASLAYSILSKDMTSSL-NKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 60 KAYGLEDMTYAKAFMKKVLESDLTDPDSYANKLSDTRYREFAAAFNFNAPEKDVQTDAQE 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I YKQS ++ A ES Y+ NI + +VD L + RL YVL++F I P Y S
Sbjct: 120 DELIGLYKQSFVDADKAAATESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYAS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FL+ VLT L++P ++++A+A F F DG+++ + T Q ++
Sbjct: 180 KDFLRQVLTSDLSDPTSIVNTQGGDKYKALAAQFSFNADGTVTGTAQ--TAAQKASVIET 237
Query: 240 YFNNTIDCV---PIVSD------------QNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Y N+ + + SD + YY I ++++ D + D +L ++ +
Sbjct: 238 YTLNSQSVIIDNSVGSDVYYVGKTAAEYNKAYYTAKIGTITNVDDLVADSRLTSYIKTA- 296
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYFFQI----NFHRDNSSS--TKIQQDSQIQKML 338
+ + + TA T++ DP +Q+ F + NF D S+S ++Q Q ++
Sbjct: 297 YSMGADFTAAALRTVL--TDPSYAQLMGFTNVYNAFNFKSDGSTSNTARVQSVEQANQLK 354
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
S I ++D+LL+ + ++ D
Sbjct: 355 SAASSTTNYYSVTSQSS----------SITNVDDLLADS-------------VLARYIKD 391
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSI-GPIPMMQ 457
AY L + + +L+N+LT D A + K LN FNFNADGSI G +
Sbjct: 392 AYGLGV-NFSNAELKNILT----DSAYAAAQGK----AGLNADFNFNADGSINGSV---- 438
Query: 458 SRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSF 517
I+ + + + +S +A + FNSM I ++ +
Sbjct: 439 ----IQTDTQRQSTTGKSAANATH--FNSM-----------------------IASVTNV 469
Query: 518 EELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFN 577
++++++ ++++ +S ++ + ++ L DP + + Y ++ FN
Sbjct: 470 DDIMSDPIAVSYIR-----NSMQIADSVSDATLRTFLVDPAAASA----QGYSDVHDLFN 520
Query: 578 FDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNH 637
F G ++ LY Q + A+Y++ TI I N
Sbjct: 521 FKTDGSVAT-----------------LYSGQTAAQSASTASKADDAAVYYQATIAGISNV 563
Query: 638 YEILGDSKL 646
++L D KL
Sbjct: 564 DQLLADQKL 572
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 133/581 (22%), Positives = 243/581 (41%), Gaps = 66/581 (11%)
Query: 29 SCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSL 88
+ ++ I ++ +D+ + D SY + M A+ L + L DP +
Sbjct: 453 AANATHFNSMIASVTNVDDIMSDPIAVSYIRNS-----MQIADSVSDATLRTFLVDPAAA 507
Query: 89 VNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNI 148
Q S + F D S + + +T Q + + A + + Y++ I
Sbjct: 508 SAQGYSDVHDLFNFKTDGS-----VATLYSGQTAAQSASTASK-----ADDAAVYYQATI 557
Query: 149 HKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRA 208
I++VDQL D++L ++V +F I P ++ L+D+LT +S +
Sbjct: 558 AGISNVDQLLADQKLNNFVRNAFGI-PSTVTDLALRDILT----------DQSGTGTYAD 606
Query: 209 MAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFS 268
+A F F+ DG+L TD Q+ I + + N Y + ++++
Sbjct: 607 VAAAFNFKADGTLEDGMPAQTDSQVTNI----------KIAATARTNDYSARMGTIANVD 656
Query: 269 DFLKDPKLFKMLQLSL-FPLNPEITADKFLTLMQENDPIVSQVKYF---FQINFHRDNS- 323
D + DP + L+ + P N +D L + + + Y NF D S
Sbjct: 657 DLIADPAITNFLKSTYNLPFN---ISDADLRSILTDSTAAAAAGYADLNADFNFAADGSL 713
Query: 324 -SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQ---------LPLGKIKSIDNL 373
+ + +Q +Q Q D Y D+ + + +Y+ L +I S+++
Sbjct: 714 PAVSSVQTAAQAQTTNDNYMARYDDERDEAIAEVASNYKSMMADSTSLLDFSEITSVNDF 773
Query: 374 LSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDD 433
L + S + AL A+ L Q++ R +R +LTS+ DPD Y KD+
Sbjct: 774 LRTNSSADFKKSNDNLPDPFHVALQAFGLTDQEVSRSMMRKILTSDAYDPDGYIASLKDE 833
Query: 434 RLIKLNHAFNFNADG-SIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQIST 492
R+ L AFNF DG + P + + + A+ + K
Sbjct: 834 RITNLARAFNFGPDGKAASPFQALPDATMAKYATDYKAHMTMLLKAGPVK---------- 883
Query: 493 QKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKS 552
+ + +EVDY+ + + S ++ L + R+ + +L++ +D + + L +IF S
Sbjct: 884 -DKAAKDATAEVDYFAKTMAKVKSLDDFLDDSRLTDLVLKANNLDPEDYDKATLKKIFTS 942
Query: 553 DLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQ 593
D D KS+ N+ D R+K+I+++FNFD G L+ KIG +Q
Sbjct: 943 DPDDKKSYLNSKADARFKDIVAAFNFDKDGNLTRAKIGTIQ 983
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 154/653 (23%), Positives = 254/653 (38%), Gaps = 103/653 (15%)
Query: 28 VSCEERYY--RERIKHISTIDEFIKDKRLFSYALKAFGLS-DMSHAEKFIKKILESDLSD 84
S YY + I+ +D+ + D L Y A+GL + S+AE +K IL +D
Sbjct: 357 ASSTTNYYSVTSQSSSITNVDDLLADSVLARYIKDAYGLGVNFSNAE--LKNIL----TD 410
Query: 85 PKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYF 144
Q + F + D S VIQ+D Q +QS K + +F
Sbjct: 411 SAYAAAQGKAGLNADFNFNADGSINGSVIQTDTQ--------RQSTTGKSAA---NATHF 459
Query: 145 RKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDN 204
I + +VD + D + Y+ S I +S L+ L A + + + D
Sbjct: 460 NSMIASVTNVDDIMSDPIAVSYIRNSMQIADS-VSDATLRTFLVDPAAASAQGYSDVHDL 518
Query: 205 RFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSV 264
F F+ DGS++ T Q S + + YY+ I +
Sbjct: 519 --------FNFKTDGSVATLYSGQTAAQSASTASKADDAAV----------YYQATIAGI 560
Query: 265 SSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNS- 323
S+ L D KL ++ + F + +T ++ + + NF D +
Sbjct: 561 SNVDQLLADQKLNNFVR-NAFGIPSTVTDLALRDILTDQSGTGTYADVAAAFNFKADGTL 619
Query: 324 -SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEG 382
Q DSQ+ N +I + DY +G I ++D+L++
Sbjct: 620 EDGMPAQTDSQV--------TNIKI----AATARTNDYSARMGTIANVDDLIA------- 660
Query: 383 PNSAEEPIITLQFALDAYNL--NMQDLDRDQLRNVLT-SNPSDPDSYANKSKDDRLIKLN 439
+P IT F YNL N+ D D LR++LT S + YA+ LN
Sbjct: 661 -----DPAIT-NFLKSTYNLPFNISDAD---LRSILTDSTAAAAAGYAD---------LN 702
Query: 440 HAFNFNADGSIGPIPMMQSRL---TIRDNVKHYANRKRSIHDAENKS-FNSMEQISTQKR 495
FNF ADGS+ + +Q+ T DN + +R AE S + SM ST
Sbjct: 703 ADFNFAADGSLPAVSSVQTAAQAQTTNDNYMARYDDERDEAIAEVASNYKSMMADSTSLL 762
Query: 496 INLEINSEVDYYTLNINTIHSFEELLANKRI---LNFLLESKGIDSQKVREDFLCEIFKS 552
EI S D+ L N+ F++ +N + + L++ G+ Q+V + +I S
Sbjct: 763 DFSEITSVNDF--LRTNSSADFKK--SNDNLPDPFHVALQAFGLTDQEVSRSMMRKILTS 818
Query: 553 DLKDPKSFANTYKDNRYKEIISSFNFDIHGE-------LSHKKIGKVQDNFHIDDTCDLY 605
D DP + + KD R + +FNF G+ L + K ++ T L
Sbjct: 819 DAYDPDGYIASLKDERITNLARAFNFGPDGKAASPFQALPDATMAKYATDYKAHMTMLLK 878
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSP 658
+ +K ++ + YF +T+ +++ + L DS+L +V K L P
Sbjct: 879 AGPVKDKAAKDATAEVD---YFAKTMAKVKSLDDFLDDSRLTDLVLKANNLDP 928
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 101/452 (22%), Positives = 183/452 (40%), Gaps = 85/452 (18%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ K +++ N + D YY IN V+S DFL D KL+ + + L
Sbjct: 11 LSKDMTSSLNKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYS-YAMKAYGLEDMTY 69
Query: 293 ADKFLTLMQENDPI--------VSQVKYF-FQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
A F+ + E+D +S +Y F F+ N+ +Q D+Q +++ LYK+
Sbjct: 70 AKAFMKKVLESDLTDPDSYANKLSDTRYREFAAAFNF-NAPEKDVQTDAQEDELIGLYKQ 128
Query: 344 NCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLN 403
+ + D + Y + ++++D+L++ +L + L + ++
Sbjct: 129 SF-VDADKAAATESTYYSNNIDSVQTVDDLVN-NTRLR------------TYVLKTFKID 174
Query: 404 MQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIR 463
+D LR VLTS+ SDP S N D+ L F+FNADG++
Sbjct: 175 PTYASKDFLRQVLTSDLSDPTSIVNTQGGDKYKALAAQFSFNADGTVT------------ 222
Query: 464 DNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEV------------DYYTLNI 511
A +K S+ E + NS I I+ + S+V YYT I
Sbjct: 223 -GTAQTAAQKASV--IETYTLNSQSVI-----IDNSVGSDVYYVGKTAAEYNKAYYTAKI 274
Query: 512 NTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKE 571
TI + ++L+A+ R+ +++ + + + DF ++ L DP S+A +
Sbjct: 275 GTITNVDDLVADSRLTSYIKTAYSMGA-----DFTAAALRTVLTDP-SYAQLMG---FTN 325
Query: 572 IISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRT- 630
+ ++FNF G S+ + Q +E+ + K + Y+ T
Sbjct: 326 VYNAFNFKSDGSTSNTA-----------------RVQSVEQANQLKSAASSTTNYYSVTS 368
Query: 631 -IPNIRNHYEILGDSKLFKVVSKKLKLSPYFA 661
+I N ++L DS L + + L F+
Sbjct: 369 QSSSITNVDDLLADSVLARYIKDAYGLGVNFS 400
>gi|327188120|gb|EGE55342.1| hypothetical protein RHECNPAF_944004 [Rhizobium etli CNPAF512]
Length = 1111
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 174/671 (25%), Positives = 303/671 (45%), Gaps = 124/671 (18%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
MI + +A SKD+ S L + V+ V + +YY + I + +D+F+ D +L+SYA+
Sbjct: 1 MITASLAYSILSKDMTSSL-NKVASQATVKKDAQYYADHINKVKDVDDFLGDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 60 KAYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPDKDVQTDAQE 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I YKQS ++ A ES Y+ NI + +VD L + RL YVL++F I P Y S
Sbjct: 120 DDLIGLYKQSFVDADKAAAAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYAS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FL+ VLT L++P ++++A+A F F DG+++ + T Q ++
Sbjct: 180 KDFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFSFNADGTVTGTAQ--TAAQKASVIET 237
Query: 240 Y--------FNNTI--DCVPI---VSDQN--YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Y +N++ D V + +D N YY I ++++ D + D +L ++ +
Sbjct: 238 YTLNSQSVIIDNSVGSDVVYVSKTAADYNKAYYTAKIGTITNVDDLVADARLTSYIK-TA 296
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYFFQI----NFHRDNSSST--KIQQDSQIQKML 338
+ + + TA ++ DP +Q+ F + NF D S+ST + Q Q K+
Sbjct: 297 YSMGADFTAPALRMVL--TDPSYAQLMGFTNVYNAFNFKADGSTSTTARAQTIDQANKLA 354
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
S I ++D+LL+ + ++ D
Sbjct: 355 SAASSTANYYSVTSQSS----------GITNVDDLLADS-------------VMARYIKD 391
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
AY L + + +L+N+LT + SYA LN FNFNADGS
Sbjct: 392 AYGLGV-NFSNAELKNILTDS-----SYAAAQGQ---AGLNADFNFNADGS--------- 433
Query: 459 RLTIRDNVKHYANRKRSIHD--AENKS-FNSMEQISTQKRINLEINSEVDYYTLNINTIH 515
I +V A +++S D A N + FN+M I +
Sbjct: 434 ---INGSVIQTAAQRKSTTDKSAANAAHFNAM-----------------------IGNVT 467
Query: 516 SFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISS 575
+ ++++++ +++L S ++ + ++ L DP + + Y ++
Sbjct: 468 NVDDIMSDPVAVSYLRT-----SMQIADSVSDATLRTFLVDPAAASA----QGYSDVHDL 518
Query: 576 FNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIR 635
FNF G ++ L+ Q + + A+Y++ TI I
Sbjct: 519 FNFKTDGSVAT-----------------LHATQTAAQSANTTSKADSAAVYYQSTIAGIS 561
Query: 636 NHYEILGDSKL 646
N ++L D KL
Sbjct: 562 NVDQLLADQKL 572
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 170/685 (24%), Positives = 309/685 (45%), Gaps = 66/685 (9%)
Query: 29 SCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSL 88
+ ++ I +++ +D+ + D SY L+ + M A+ L + L DP +
Sbjct: 453 AANAAHFNAMIGNVTNVDDIMSDPVAVSY-LR----TSMQIADSVSDATLRTFLVDPAAA 507
Query: 89 VNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNI 148
Q S + F +F V H T Q QS + A + Y++ I
Sbjct: 508 SAQGYSDVHDLF----NFKTDGSVA---TLHAT--QTAAQSANTTSK-ADSAAVYYQSTI 557
Query: 149 HKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRA 208
I++VDQL D++L ++V ++ I P ++ L+++LT +S +
Sbjct: 558 AGISNVDQLLADQKLNNFVRNAYGI-PSTVTDVDLRNILT----------DQSGTGTYAD 606
Query: 209 MAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFS 268
+A F F+ DGSL D + S N I D Y + ++++
Sbjct: 607 VAAAFNFKADGSLE-------DGLAAQTSSQTTNTKIAAGARTDD---YSSRMATIANVD 656
Query: 269 DFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQ--INFHRDNS--S 324
+ + DP + L+ S + L +I+ + +++ + + NF D S +
Sbjct: 657 ELIADPAITNFLK-STYNLPFDISDAELKSILTDATAAAAAGHADLNADFNFAADGSLPA 715
Query: 325 STKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQ---------LPLGKIKSIDNLLS 375
+ +Q Q Q D Y D+ ++ + +Y L +IK++++ L
Sbjct: 716 VSSVQTADQAQTTNDNYMARYDDERDEAIEEVADNYSSMMADSTSLLDTAEIKTVNDFLR 775
Query: 376 GKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRL 435
+ S ++ AL A+ L Q++ R +R +LTS+ DP+ Y KD+R+
Sbjct: 776 TNAAADFKKSNDKLPDPYHVALQAFGLTDQEVPRSMMRKILTSDAYDPNGYIASLKDERI 835
Query: 436 IKLNHAFNFNADG-SIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSM--EQIST 492
L AFNF DG + P+ + + YA + K+ +M +
Sbjct: 836 TNLARAFNFGPDGKAAAPLQALPDA-----TLAKYAT--------DYKAHVTMLLKAGPV 882
Query: 493 QKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKS 552
+ + + + +EVDY+ + + S ++ LA+ R+ + +L++ +D +K + L +IF S
Sbjct: 883 KDKASKDATTEVDYFAKGMAKVQSLDDFLADSRLTDLVLKANNLDPKKYDKATLEKIFTS 942
Query: 553 DLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEK 612
D D KS+ NT D R+K+I+++FNFD G L+ KIG +Q+ T DLY Q +E
Sbjct: 943 DPDDKKSYLNTKADARFKDIVAAFNFDKDGNLTRAKIGTIQNKAAEAHTQDLYVKQTLET 1002
Query: 613 KEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRIL 672
++ E + + LALYF R P+I + Y ILGD L++V++ L + + K+ ++
Sbjct: 1003 QQGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVAKQADLI 1062
Query: 673 KKHIKINDFKDSKKVEDFLYAAKAM 697
+ +K+ D +D KKV+ L AM
Sbjct: 1063 NRFVKLEDLQDPKKVDKLLRRFTAM 1087
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+S+ ++++Q + + YY +IN + ++ L + ++ ++ +++ G++ +
Sbjct: 17 SSLNKVASQA----TVKKDAQYYADHINKVKDVDDFLGDYKLYSYAMKAYGLEDMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ +SDL DP S+AN D RY+E ++FNF+ + VQ + DD L
Sbjct: 73 FMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPDK-------DVQTDAQEDDLIGL 125
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFA 661
YK ++ + A + Y+ I +++ +++ +++L V K K+ P +A
Sbjct: 126 YKQSFVDADKAAA----AESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYA 178
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
SKD + E Y+ + + + ++D+F+ D RL LKA L + + ++KI SD
Sbjct: 886 ASKD--ATTEVDYFAKGMAKVQSLDDFLADSRLTDLVLKANNLDPKKYDKATLEKIFTSD 943
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS---DIQHKTI--------IQDYKQSH 130
D KS +N +++ +++F + ++ IQ+K ++ ++
Sbjct: 944 PDDKKSYLNTKADARFKDIVAAFNFDKDGNLTRAKIGTIQNKAAEAHTQDLYVKQTLETQ 1003
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
Q + + + YF + I S+ + D+ L + ++S+ + S+ K
Sbjct: 1004 QGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVAK 1057
>gi|209548151|ref|YP_002280068.1| hypothetical protein Rleg2_0545 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533907|gb|ACI53842.1| protein of unknown function DUF1217 [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 1111
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 175/669 (26%), Positives = 304/669 (45%), Gaps = 120/669 (17%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
MI + +A SKD+ S L + V+ V + YY + I ++++D+F+ D +L+SYA+
Sbjct: 1 MITASLAYTILSKDMTSSL-NKVASQATVKKDAEYYADHINKVTSVDDFLGDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 60 KAYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFASAFNFNAPEKDVQTDAQE 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I YKQS ++ ES Y+ NI + +VD L + RL YVL++F+I P Y S
Sbjct: 120 DDLIGLYKQSFIDADKATTAESTYYSNNIDSVTTVDDLVNNTRLRTYVLKTFNIDPTYAS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FL+ VLT L++P ++++A+A F F DG+++ + T Q ++
Sbjct: 180 KDFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFSFNADGTVTGTAQ--TAAQKASVIET 237
Query: 240 YFNNTIDCV---PIVSD------------QNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Y N+ + + SD Q YY I ++++ D + D +L ++ +
Sbjct: 238 YTLNSQSVIIDNSVGSDVVYVNKTAADYNQAYYTAKIGTITNVDDLVADKRLTSYIK-TA 296
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYFFQI----NFHRDNSSST--KIQQDSQIQKML 338
+ + + TA T++ DP +Q+ F + NF D S+S+ +++ Q K+
Sbjct: 297 YSMGADFTAAALRTVL--TDPGYAQLMGFTNVYNAFNFKSDGSTSSTARVRTLDQANKL- 353
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
S +Y + SI N+ L N A ++ D
Sbjct: 354 ------------SSAASQTANYYKVTSQSSSITNV---DALLADGNMA-------RYIKD 391
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSI-GPIPMMQ 457
AY L + D L+N+LT D A + D LN FNF ADGSI G +
Sbjct: 392 AYGLGTGFSNAD-LKNILT----DSAYAAAQGHAD----LNADFNFQADGSINGSV---- 438
Query: 458 SRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSF 517
I+ + + + +S +A + FN+M I+++ S
Sbjct: 439 ----IQTDTQRKSTTDKSAANAAH--FNAM-----------------------IDSVTSV 469
Query: 518 EELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFN 577
++++++ +++L S +V + ++ L DP + + Y ++ FN
Sbjct: 470 DDIMSDPVAVSYLRT-----SMQVADSVSDATLRTFLVDPAAASA----QGYSDVHDLFN 520
Query: 578 FDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNH 637
F G ++ LY Q + A+Y++ TI I N
Sbjct: 521 FKTDGSVAT-----------------LYASQTAAQSASTSSKADNAAVYYQATIAGIANV 563
Query: 638 YEILGDSKL 646
++L D KL
Sbjct: 564 DQLLSDQKL 572
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 170/691 (24%), Positives = 300/691 (43%), Gaps = 78/691 (11%)
Query: 29 SCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSL 88
+ ++ I ++++D+ + D SY L+ + M A+ L + L DP +
Sbjct: 453 AANAAHFNAMIDSVTSVDDIMSDPVAVSY-LR----TSMQVADSVSDATLRTFLVDPAAA 507
Query: 89 VNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNI 148
Q S + F D S + + +T Q S + A + Y++ I
Sbjct: 508 SAQGYSDVHDLFNFKTDGS-----VATLYASQTAAQSASTSSK-----ADNAAVYYQATI 557
Query: 149 HKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRA 208
I +VDQL D++L ++V +F I P ++ L+ +LT +S +
Sbjct: 558 AGIANVDQLLSDQKLNNFVRNAFGI-PSTVTDVALRGILT----------DQSGTGTYAD 606
Query: 209 MAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFS 268
+A F F+ DGSL TD QI NT +D Y + ++++
Sbjct: 607 VAAAFNFKADGSLKDGLAAQTDTQIR--------NTKFAAGARTDD--YSARMATIANVD 656
Query: 269 DFLKDPKLFKMLQLSL-FPLN---------------------PEITADKFLTLMQENDPI 306
D + DP + L+ + PLN ++ AD F + P+
Sbjct: 657 DLIADPAITNFLKSTYNLPLNISNADLKSYLTDATAASAAGYADLNAD-FNFAADGSLPV 715
Query: 307 VSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGK 366
VS V+ Q DN + + D + ++ +D N + D SL L +
Sbjct: 716 VSSVQTADQAQTTNDNYMA---RYDDEREEAIDEVASNYSSMMADST-SL-----LDTAE 766
Query: 367 IKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSY 426
IKS+++ + + S + AL A+ L QD+ R +R +LTS+ DP+ Y
Sbjct: 767 IKSVNDFMRTNATADFKKSNDNLPDPYHVALQAFGLTEQDVPRSMMRKILTSDAYDPNGY 826
Query: 427 ANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNS 486
KD+R+ + AFNF DG T+ Y +
Sbjct: 827 IASLKDERITNMARAFNFGPDGKAASPFQALPDATLAKYATDYKAHMTML---------- 876
Query: 487 MEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFL 546
++ + + + + +EVDY+ + + S ++ L + R+ + +L++ +D + + L
Sbjct: 877 LKAGPVKDKASKDATTEVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDKATL 936
Query: 547 CEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
+IF SD D KS+ N D R+K+I+++FNFD G L+ K+G +Q+ + T +LY
Sbjct: 937 KKIFTSDPDDKKSYLNAKADARFKDIVAAFNFDKDGNLTRAKMGTIQNKAAEEHTQELYV 996
Query: 607 HQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPER 666
Q +E ++ E + + LALYF R P+I + Y ILGD L++VV+ L + +
Sbjct: 997 QQTMEAQQGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVVTTAYSLPSQMSGMDVT 1056
Query: 667 KKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
K+ +L + +K+ D +D KKV+ + AM
Sbjct: 1057 KQADLLNRFVKLEDLQDPKKVDKLVRRFTAM 1087
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+S+ ++++Q + + +YY +IN + S ++ L + ++ ++ +++ G++ +
Sbjct: 17 SSLNKVASQA----TVKKDAEYYADHINKVTSVDDFLGDYKLYSYAMKAYGLEDMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ +SDL DP S+AN D RY+E S+FNF+ + VQ + DD L
Sbjct: 73 FMKKVLESDLTDPNSYANKLSDTRYREFASAFNFNAPEK-------DVQTDAQEDDLIGL 125
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFA 661
YK I+ + A + Y+ I ++ +++ +++L V K + P +A
Sbjct: 126 YKQSFIDADK----ATTAESTYYSNNIDSVTTVDDLVNNTRLRTYVLKTFNIDPTYA 178
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 22/206 (10%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
SKD + E Y+ + + + ++D+F+ D RL LKA L + + +KKI SD
Sbjct: 886 ASKD--ATTEVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSD 943
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS---DIQHKTI--------IQDYKQSH 130
D KS +N +++ +++F + ++ IQ+K +Q ++
Sbjct: 944 PDDKKSYLNAKADARFKDIVAAFNFDKDGNLTRAKMGTIQNKAAEEHTQELYVQQTMEAQ 1003
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLG 190
Q + + + YF + I S+ + D+ L V ++S+ + + K L
Sbjct: 1004 QGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVVTTAYSLPSQMSGMDVTKQADLLN 1063
Query: 191 -------LANPKKYFIESRDNRFRAM 209
L +PKK ++ RF AM
Sbjct: 1064 RFVKLEDLQDPKK--VDKLVRRFTAM 1087
>gi|116250732|ref|YP_766570.1| hypothetical protein RL0958 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255380|emb|CAK06455.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 1109
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 182/727 (25%), Positives = 314/727 (43%), Gaps = 130/727 (17%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
MI + +A S+D+ S L + V+ V + +YY + I + +D+F+ D +L+SYA+
Sbjct: 1 MISASLAYTILSRDMTSSL-NKVASQATVKKDAQYYADHINKVENVDDFLGDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 60 KAYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPEKDVQTDAQE 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I YKQS ++ A ES Y+ NI + +VD L + RL YVL++F+I P Y S
Sbjct: 120 DDLIGLYKQSFVDADKAASAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFNIDPTYAS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FL+ VLT L++P ++++A+A F F DG+++ + T Q ++ +
Sbjct: 180 KDFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFSFNADGTVTGTAQ--TAAQKASVIES 237
Query: 240 YFNNTIDCV---PIVSD------------QNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Y N+ + + SD + YY I ++++ D + D +L + +
Sbjct: 238 YTLNSQSVIIDNSVGSDVYYVGQTAADYNKAYYTAKIGTITNVDDLVADKRLTSYIT-TA 296
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYFFQI----NFHRDNSSST--KIQQDSQIQKML 338
+ + + TA T++ DP +Q+ F + NF D S+S+ ++Q Q +
Sbjct: 297 YSMGADFTAAALRTVL--TDPGYAQLMGFTNVYNAFNFKADGSASSTARVQTVDQANSL- 353
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
KN + + + + I ++D+LL+ + ++ D
Sbjct: 354 ----KNAATMTGNYYTTTSQS-----TGITNVDDLLADN-------------VLARYIKD 391
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
AY L D L+N+LT D A + D LN FNF ADGSI
Sbjct: 392 AYGLGT-DFSNADLKNILT----DSAYAAAQGHAD----LNADFNFQADGSING------ 436
Query: 459 RLTIRDNVKHYANRKRSIHD--AENKS-FNSMEQISTQKRINLEINSEVDYYTLNINTIH 515
+V A +++S D A N + FNSM I +
Sbjct: 437 ------SVIQTAAQRKSTTDKSAVNAAHFNSM-----------------------IGNVT 467
Query: 516 SFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISS 575
+ ++++++ ++++ S I D F D + Y ++
Sbjct: 468 NVDDIMSDAVAVSYIRNSMQI--ADSVSDATLRTFLVDRTAASA-------QGYSDVHDL 518
Query: 576 FNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIR 635
FNF G ++ LY Q + A+Y++ TI I
Sbjct: 519 FNFKSDGSIAT-----------------LYASQTATQSASTTSKADNAAVYYQSTIAGIS 561
Query: 636 NHYEILGDSKLFKVVSKKLKLSPYF------AVLPERKKIRILKKHIKINDFKDSKKVED 689
N ++L D KL V + A+L ++ +FK +ED
Sbjct: 562 NVDQLLADQKLNNFVRNAYGIPSTVSDVDLRAILTDQSGTGTYADVAAAFNFKADGTLED 621
Query: 690 FLYAAKA 696
+ A A
Sbjct: 622 GMAAQTA 628
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 147/568 (25%), Positives = 252/568 (44%), Gaps = 45/568 (7%)
Query: 143 YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESR 202
Y++ I I++VDQL D++L ++V ++ I P +S L+ +LT +S
Sbjct: 552 YYQSTIAGISNVDQLLADQKLNNFVRNAYGI-PSTVSDVDLRAILT----------DQSG 600
Query: 203 DNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAIN 262
+ +A F F+ DG+L T QI S F T + + Y ++
Sbjct: 601 TGTYADVAAAFNFKADGTLEDGMAAQTATQIS---STKFAAT-------ARTDDYSARMS 650
Query: 263 SVSSFSDFLKDPKLFKMLQLSL-FPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRD 321
++S+ D L D + L+ + P N K + NF D
Sbjct: 651 TISNVDDLLADSAITNFLKSTYNLPFNISDADLKSILTDATAAAAAGHADLNADFNFAAD 710
Query: 322 NS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQ---------LPLGKIKSI 370
S + +Q Q Q D Y D+ + + +YQ L + S+
Sbjct: 711 GSLPVVSSVQTADQAQTTNDNYAARYDDERDEAIDEVASNYQKLMADSSSLLNFSDVNSV 770
Query: 371 DNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKS 430
++ L + S + AL A+ L Q++ R +R +LTS+ DPD Y
Sbjct: 771 NDFLRSNSAADFSKSNDNLPDLFHVALQAFGLTDQEVSRSMMRKILTSDAYDPDGYVASL 830
Query: 431 KDDRLIKLNHAFNFNADG-SIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQ 489
KD+R+ L AFNF DG + P + + YA RS H M+
Sbjct: 831 KDERITNLARAFNFGPDGKAASPFQALPDA-----TMAKYATDYRS-HITM-----LMKD 879
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
+ + + +EVDY+ + + S ++ L + R+ + +L++ +D + + L +I
Sbjct: 880 GPVKDKAAKDATAEVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKI 939
Query: 550 FKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQM 609
F SD D KS+ N D R+++I+++FNFD G L+ KIG +Q+ + T +LY Q
Sbjct: 940 FTSDPDDKKSYLNATADARFQDIVAAFNFDKDGNLTRAKIGTIQNKAAEEHTQELYVQQT 999
Query: 610 IEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKI 669
+E ++ E + + LALYF R +I + Y ILGD L++V++ L + + K+
Sbjct: 1000 MEAQQGESNDGVRLALYFSRKASSITSIYGILGDKALYQVITTAYSLPSQISGMDVAKQA 1059
Query: 670 RILKKHIKINDFKDSKKVEDFLYAAKAM 697
++ + +K+ D +D KKV+ L AM
Sbjct: 1060 DLINRFVKLEDLQDPKKVDKLLRRFTAM 1087
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 86/192 (44%), Gaps = 18/192 (9%)
Query: 54 LFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVI 113
LF AL+AFGL+D + ++KIL SD DP V L + AR+++F P K
Sbjct: 792 LFHVALQAFGLTDQEVSRSMMRKILTSDAYDPDGYVASLKDERITNLARAFNFGPDGKAA 851
Query: 114 QS-----DIQHKTIIQDYKQSH-----------QHKEEVALEESKYFRKNIHKINSVDQL 157
D DY+ SH + A E YF K + K+ S+D
Sbjct: 852 SPFQALPDATMAKYATDYR-SHITMLMKDGPVKDKAAKDATAEVDYFAKGMAKVKSLDDF 910
Query: 158 FKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQP 217
D RL D VL++ ++ PK LK + T + K Y + D RF+ + F F
Sbjct: 911 LDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLNATADARFQDIVAAFNFDK 970
Query: 218 DGSLSKRDKILT 229
DG+L+ R KI T
Sbjct: 971 DGNLT-RAKIGT 981
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 132/619 (21%), Positives = 243/619 (39%), Gaps = 132/619 (21%)
Query: 4 SHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFG 63
+A + ++ ST SK + YY+ I IS +D+ + D++L ++ A+G
Sbjct: 525 GSIATLYASQTATQSASTTSKADNAAV---YYQSTIAGISNVDQLLADQKLNNFVRNAYG 581
Query: 64 L-SDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTI 122
+ S +S + ++ I L +Q + Y A +++F ++ + +T
Sbjct: 582 IPSTVSDVD--LRAI----------LTDQSGTGTYADVAAAFNF-KADGTLEDGMAAQTA 628
Query: 123 IQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPF 182
Q + A + + + I++VD L D + +++ ++++ P IS
Sbjct: 629 TQ-----ISSTKFAATARTDDYSARMSTISNVDDLLADSAITNFLKSTYNL-PFNISDAD 682
Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF- 241
LK +LT A + + +F F DGSL + T Q + NY
Sbjct: 683 LKSILTDATAAAAAGHAD--------LNADFNFAADGSLPVVSSVQTADQAQTTNDNYAA 734
Query: 242 ------NNTIDCVPIVSDQNYYKLAINS--------VSSFSDFLKD-------------P 274
+ ID V NY KL +S V+S +DFL+ P
Sbjct: 735 RYDDERDEAIDEVA----SNYQKLMADSSSLLNFSDVNSVNDFLRSNSAADFSKSNDNLP 790
Query: 275 KLFKMLQLSLFPLNPE----------ITADKF----LTLMQENDPIVSQVKYFFQINFHR 320
LF + L F L + +T+D + +++ I + + F NF
Sbjct: 791 DLFH-VALQAFGLTDQEVSRSMMRKILTSDAYDPDGYVASLKDERITNLARAF---NFGP 846
Query: 321 DNSSSTKIQQ--DSQIQKMLDLYKKNCQILHDDK---------MQSLIKDYQLPLGKIKS 369
D +++ Q D+ + K Y+ + +L D + + + + K+KS
Sbjct: 847 DGKAASPFQALPDATMAKYATDYRSHITMLMKDGPVKDKAAKDATAEVDYFAKGMAKVKS 906
Query: 370 IDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANK 429
+D+ L ++ +T L A NL+ +D D+ L+ + TS+P D SY N
Sbjct: 907 LDDFL------------DDSRLT-DLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLNA 953
Query: 430 SKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSME- 488
+ D R + AFNF+ DG++ R + N+ H E +ME
Sbjct: 954 TADARFQDIVAAFNFDKDGNL-----------TRAKIGTIQNKAAEEHTQELYVQQTMEA 1002
Query: 489 -QISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES-------KGIDSQK 540
Q + + L + Y++ ++I S +L +K + + + G+D K
Sbjct: 1003 QQGESNDGVRLAL-----YFSRKASSITSIYGILGDKALYQVITTAYSLPSQISGMDVAK 1057
Query: 541 VREDFLCEIFK-SDLKDPK 558
+ D + K DL+DPK
Sbjct: 1058 -QADLINRFVKLEDLQDPK 1075
>gi|86356543|ref|YP_468435.1| hypothetical protein RHE_CH00897 [Rhizobium etli CFN 42]
gi|86280645|gb|ABC89708.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 1110
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 175/670 (26%), Positives = 298/670 (44%), Gaps = 122/670 (18%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
MI + +A SKD+ S L + V+ V + +YY + I + +D+F+ D RL+SYA+
Sbjct: 1 MITASLAYTILSKDMTSSL-NKVAAQATVKKDAQYYADNINKVKDVDDFLGDYRLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 60 KAYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPEKDVQTDAQE 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I YKQS ++ A ES Y+ NI + +VD L + RL YVL++F I P Y S
Sbjct: 120 DELIGLYKQSFVDADKAAATESTYYSNNIDSVQTVDDLVDNARLRTYVLKAFKIDPTYAS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FL+ VLT L++P ++++A+A F F DG+++ + T Q I+
Sbjct: 180 KDFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFSFNADGTVNGSAQTAT--QKASIIET 237
Query: 240 YFNNTIDCV---PIVSD------------QNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Y N+ + + SD Q YY I ++++ D + D +L ++ +
Sbjct: 238 YTLNSQSVIIDNSVGSDVVYVSKTAAEYNQAYYTAKIGTITNVDDLVADSRLTSYIKTA- 296
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYFFQI----NFHRDNSSST--KIQQDSQIQKML 338
+ + + TA T++ DP +Q+ F + NF D ++ST + Q Q K+
Sbjct: 297 YSMGADFTAAALRTVL--TDPGYAQLMGFTNVYNAFNFKADGTTSTTARAQTIDQSNKLK 354
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
D + I ++D+LL+ + ++ D
Sbjct: 355 DAAASTANYYSVTSRST----------SITNVDDLLADS-------------VLARYIKD 391
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
AY L +L+++LT + +YA LN FNF ADGSI M+Q+
Sbjct: 392 AYGLGTS-FSNAELKSILTDS-----TYATAQGH---ADLNADFNFQADGSING-SMIQT 441
Query: 459 RLTIRDNVKHYANRKRSI-HDAENKS-FNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
A RK + A N + FNSM I + +
Sbjct: 442 D----------AQRKSTTDKSAANAAHFNSM-----------------------IGNVTN 468
Query: 517 FEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSF 576
++++++ +++L S ++ + +S L DP + + Y ++ F
Sbjct: 469 VDDIMSDPVAVSYLRT-----SMQIADSVSDATLRSFLVDPAAASA----QGYSDVHDLF 519
Query: 577 NFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN 636
NF G ++ LY Q + A+Y++ TI I N
Sbjct: 520 NFKTDGSVAT-----------------LYATQSAAQSASTASKADDAAVYYQATIAGISN 562
Query: 637 HYEILGDSKL 646
++L D +L
Sbjct: 563 VDQLLSDRRL 572
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 155/577 (26%), Positives = 269/577 (46%), Gaps = 51/577 (8%)
Query: 137 ALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKK 196
A + + Y++ I I++VDQL DRRL +++ ++ I P +S L+ +LT
Sbjct: 546 ADDAAVYYQATIAGISNVDQLLSDRRLNNFIRNAYGI-PSTVSDVDLRAILT-------- 596
Query: 197 YFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNY 256
+S + +A F F+ DGSL T QI N I D
Sbjct: 597 --DQSGTGTYADVAAAFNFKADGSLEDGMAAQTAAQIT-------NTKIAATARTDD--- 644
Query: 257 YKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYF--- 313
Y + +S+ D + DP + L+ S + L +IT D L + + + Y
Sbjct: 645 YSARVARISNVDDLIADPAITNFLK-STYNLPFDIT-DADLKSILTDATAAAAAGYSDLN 702
Query: 314 FQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQ---------L 362
NF D S + IQ Q Q D Y D+ ++ + +Y+ L
Sbjct: 703 ADFNFAADGSLPVVSSIQTADQAQTTNDNYMARYDDERDEAIEEVADNYKSMMADSSSLL 762
Query: 363 PLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSD 422
+K++++ L + S + AL A+ L QD+ R +R +LTS+ D
Sbjct: 763 NFSDVKTVNDFLRTNRSADFTKSNDNLPDLYHVALQAFGLTDQDVPRSMMRKILTSDAYD 822
Query: 423 PDSYANKSKDDRLIKLNHAFNFNADG-SIGPIPMM-QSRLTIRDNVKHYANRKRSIHDAE 480
PD Y KD+R+ L AFNF DG + P+ + Q+ + K+ + K +
Sbjct: 823 PDGYIASLKDERITNLARAFNFGPDGKAASPLQALPQATM-----AKYATDYKAHVT--- 874
Query: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540
++ + + + + +EVDY+ + + S ++ L + R+ + +L++ +D +
Sbjct: 875 ----MLLKAGPVKDKASKDATAEVDYFAKGMAKVQSLDDFLDDSRLTDLVLKANNLDPKD 930
Query: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600
+ L +IF SD D KS+ NT D R+K+I+++FNFD G L+ KIG +Q+ ++
Sbjct: 931 YDKATLKKIFTSDPDDKKSYLNTKADARFKDIVAAFNFDKDGNLTRAKIGAIQNKAAEEN 990
Query: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660
T +LY Q +E ++ E + + LALYF R P+I + Y ILGD L++V++ L
Sbjct: 991 TQELYIKQTLETQQGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQI 1050
Query: 661 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
+ + K+ ++ + +K++D +D KKV+ L AM
Sbjct: 1051 SSMDVAKQADLINRFVKLDDLQDPKKVDKLLRRFTAM 1087
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 104/457 (22%), Positives = 181/457 (39%), Gaps = 95/457 (20%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ K +++ N + D YY IN V DFL D +L+ + + L
Sbjct: 11 LSKDMTSSLNKVAAQATVKKDAQYYADNINKVKDVDDFLGDYRLYS-YAMKAYGLEDMTY 69
Query: 293 ADKFLTLMQENDPI--------VSQVKYF-FQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
A F+ + E+D +S +Y F F+ N+ +Q D+Q +++ LYK+
Sbjct: 70 AKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNF-NAPEKDVQTDAQEDELIGLYKQ 128
Query: 344 NCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLN 403
+ + D + Y + ++++D+L+ +L + L A+ ++
Sbjct: 129 SF-VDADKAAATESTYYSNNIDSVQTVDDLVD-NARLR------------TYVLKAFKID 174
Query: 404 MQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIR 463
+D LR VLTS+ SDP S N D+ L F+FNADG++
Sbjct: 175 PTYASKDFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFSFNADGTV------------- 221
Query: 464 DNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEV------------DYYTLNI 511
+ A +K SI E + NS I I+ + S+V YYT I
Sbjct: 222 NGSAQTATQKASI--IETYTLNSQSVI-----IDNSVGSDVVYVSKTAAEYNQAYYTAKI 274
Query: 512 NTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK-----SFANTYKD 566
TI + ++L+A+ R+ +++ + + + DF ++ L DP F N Y
Sbjct: 275 GTITNVDDLVADSRLTSYIKTAYSMGA-----DFTAAALRTVLTDPGYAQLMGFTNVY-- 327
Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626
++FNF G S + Q I++ + KD + A Y
Sbjct: 328 -------NAFNFKADGTTSTTA-----------------RAQTIDQSNKLKDAAASTANY 363
Query: 627 FKRT--IPNIRNHYEILGDSKLFKVVSKKLKLSPYFA 661
+ T +I N ++L DS L + + L F+
Sbjct: 364 YSVTSRSTSITNVDDLLADSVLARYIKDAYGLGTSFS 400
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
SKD + E Y+ + + + ++D+F+ D RL LKA L + + +KKI SD
Sbjct: 886 ASKD--ATAEVDYFAKGMAKVQSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSD 943
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS---DIQHKTI--------IQDYKQSH 130
D KS +N +++ +++F + ++ IQ+K I+ ++
Sbjct: 944 PDDKKSYLNTKADARFKDIVAAFNFDKDGNLTRAKIGAIQNKAAEENTQELYIKQTLETQ 1003
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
Q + + + YF + I S+ + D+ L + ++S+ + S+ K
Sbjct: 1004 QGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVAK 1057
>gi|115524603|ref|YP_781514.1| hypothetical protein RPE_2596 [Rhodopseudomonas palustris BisA53]
gi|115518550|gb|ABJ06534.1| protein of unknown function DUF1217 [Rhodopseudomonas palustris
BisA53]
Length = 799
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 186/711 (26%), Positives = 300/711 (42%), Gaps = 140/711 (19%)
Query: 28 VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKS 87
V + RYY +I I+T+D+ + + RL +Y AFG+ D + + +K IL SD SDP S
Sbjct: 138 VGEDTRYYNAKIGSIATVDQLLNNDRLRTYVFSAFGIDDGTWSRATMKNILGSDPSDPGS 197
Query: 88 LVNQLNSLKYQYFARSYDFSPP----------PKVIQSDIQHKTIIQDYKQSHQH----- 132
+N + + PP + +D K I DY
Sbjct: 198 YINTV-------------WGPPLDDAIASFNLAQAESTDASSK--IDDYTAQMAQPGADL 242
Query: 133 ---KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTL 189
K ++ALE+ + + K +S F K ++ +
Sbjct: 243 ADLKAKIALEQGR-----VAKASSDMSGFN------------------------KTIIAI 273
Query: 190 GLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF----NNTI 245
G YF +A F F DG+L+ TD + KI + F T
Sbjct: 274 G-----HYF---------ELASAFEFSTDGTLASGVAAQTD-ENRKITNEKFIADQPRTS 318
Query: 246 DCVPIVSDQNYYKLAINSVSSFSDFLKDPKL---------FKMLQLSLFPLNPEITADK- 295
+V ++ Y++ +S + + D F + L L L +T+D+
Sbjct: 319 PAAALV-EKAYFEQQASSARTVDELFADDAFRMAKFIGVAFGVGTLPLSTLKSILTSDRD 377
Query: 296 ------FLTLMQENDPIVSQVKYFFQINFHRDNS------SSTKIQQDSQIQKMLDLYKK 343
F+ L N +++ F NF +D + + + Q + I + + Y
Sbjct: 378 VNNASSFVNLAGSNKDAYTRLMNAF--NFKQDGTLDAGVDAQSATQSSATIGRYMTAYND 435
Query: 344 NCQILHDDKMQSLIKD-YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNL 402
D+ + L K ++ + I SI+ +S P + FAL+A L
Sbjct: 436 -----ADEASEKLAKQMFKSGVYGITSIEKFVS------------TPSV-YNFALEAVGL 477
Query: 403 NMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTI 462
+ + ++ L S+ SDP SY KDDR ++L FNF++ G + + Q +
Sbjct: 478 DPDSVSATTVKAALKSDLSDPKSYVYTLKDDRYVQLARYFNFDSKGQLTTPLVAQDAAEV 537
Query: 463 RDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVD--YYTLNINTIHSFEEL 520
+ K Y K A K+ L+ +E D YY I + S EL
Sbjct: 538 TNIAKDYVIAKTKFASAAEKA-------------GLQEAAEKDALYYKNAIAGVDSVSEL 584
Query: 521 LANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDI 580
LA+K+++NF+L +KG+D +KV D+L +IF SDL D KSFAN D R+ EI +SFNFD
Sbjct: 585 LADKKLVNFILVAKGLDPKKVTNDYLRKIFSSDLSDAKSFANKESDLRFAEIAASFNFDK 644
Query: 581 HGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEI 640
G+++ Q + +T + Y Q +E ++ +P + LALYF+R P I + Y+I
Sbjct: 645 KGKVTRIAATGPQSREQLLETQNNYLQQSLESQQGNTNPGVRLALYFQRKAPEITSAYQI 704
Query: 641 LGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFL 691
L D LF+V L A P K+ +I++KH+K+ D D K+ L
Sbjct: 705 LADKALFEVFRTTYSLPDTMANAPIEKQAKIVEKHLKLKDLGDPAKLGRVL 755
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
V++ V+ YY+E I + T+D+F+K+ RL+ YA+KA+GL DM+ A+ F+KK+LESD
Sbjct: 22 VAQQTDVTRAASYYKENIGKVKTVDDFMKNDRLYRYAMKAYGLEDMTFAKAFMKKVLESD 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
L+D KS N+L +YQ FA ++ F S V Q+ Q ++ Y + Q + + E+
Sbjct: 82 LTDSKSFANKLTDKRYQEFAAAFSFNSATTAVAQTSYQTDEMVGLYTATLQQQADAVGED 141
Query: 141 SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKY 197
++Y+ I I +VDQL + RL YV +F I S +K++L ++P Y
Sbjct: 142 TRYYNAKIGSIATVDQLLNNDRLRTYVFSAFGIDDGTWSRATMKNILGSDPSDPGSY 198
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 15 QSKLFSTVSKDPIVSCEER---YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAE 71
++K S K + E+ YY+ I + ++ E + DK+L ++ L A GL
Sbjct: 548 KTKFASAAEKAGLQEAAEKDALYYKNAIAGVDSVSELLADKKLVNFILVAKGLDPKKVTN 607
Query: 72 KFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVI-------QSDIQ----HK 120
+++KI SDLSD KS N+ + L++ A S++F KV QS Q
Sbjct: 608 DYLRKIFSSDLSDAKSFANKESDLRFAEIAASFNFDKKGKVTRIAATGPQSREQLLETQN 667
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+Q +S Q + + YF++ +I S Q+ D+ L + ++S+ +
Sbjct: 668 NYLQQSLESQQGNTNPGVRLALYFQRKAPEITSAYQILADKALFEVFRTTYSLPDTMANA 727
Query: 181 PFLK 184
P K
Sbjct: 728 PIEK 731
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 70/148 (47%), Gaps = 10/148 (6%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ YY NI + + ++ + N R+ + +++ G++ + F+ ++ +SDL D K
Sbjct: 27 DVTRAASYYKENIGKVKTVDDFMKNDRLYRYAMKAYGLEDMTFAKAFMKKVLESDLTDSK 86
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
SFAN D RY+E ++F+F+ Q ++ D+ LY + +++ D
Sbjct: 87 SFANKLTDKRYQEFAAAFSFN------SATTAVAQTSYQTDEMVGLYTATL----QQQAD 136
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKL 646
Y+ I +I ++L + +L
Sbjct: 137 AVGEDTRYYNAKIGSIATVDQLLNNDRL 164
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 112/294 (38%), Gaps = 62/294 (21%)
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
Y+ +GK+K++D+ + ++A+ AY L + ++ VL S+
Sbjct: 35 YKENIGKVKTVDDFMKNDR-------------LYRYAMKAYGLEDMTFAKAFMKKVLESD 81
Query: 420 PSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDA 479
+D S+ANK D R + AF+FN+ + Q+ + V Y + DA
Sbjct: 82 LTDSKSFANKLTDKRYQEFAAAFSFNS----ATTAVAQTSYQTDEMVGLYTATLQQQADA 137
Query: 480 ENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQ 539
+ + YY I +I + ++LL N R+ ++ + GID
Sbjct: 138 --------------------VGEDTRYYNAKIGSIATVDQLLNNDRLRTYVFSAFGIDDG 177
Query: 540 KVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHID 599
+ I SD DP S+ NT + I+SFN + + ID
Sbjct: 178 TWSRATMKNILGSDPSDPGSYINTVWGPPLDDAIASFNL--------AQAESTDASSKID 229
Query: 600 DTCDLYKHQMIEKKEEEKDPNIALAL-------------YFKRTIPNIRNHYEI 640
D Y QM + + D +AL F +TI I +++E+
Sbjct: 230 D----YTAQMAQPGADLADLKAKIALEQGRVAKASSDMSGFNKTIIAIGHYFEL 279
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 30/191 (15%)
Query: 250 IVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQ 309
+ +YYK I V + DF+K+ +L++ + + L A F+ + E+D ++
Sbjct: 28 VTRAASYYKENIGKVKTVDDFMKNDRLYRY-AMKAYGLEDMTFAKAFMKKVLESD--LTD 84
Query: 310 VKYF-----------FQINFHRDNSSSTKIQQDS-QIQKMLDLYKKNCQILHDDKMQSLI 357
K F F F NS++T + Q S Q +M+ LY Q D +
Sbjct: 85 SKSFANKLTDKRYQEFAAAFSF-NSATTAVAQTSYQTDEMVGLYTATLQ-QQADAVGEDT 142
Query: 358 KDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLT 417
+ Y +G I ++D LL+ + + T F+ A+ ++ R ++N+L
Sbjct: 143 RYYNAKIGSIATVDQLLN-----------NDRLRTYVFS--AFGIDDGTWSRATMKNILG 189
Query: 418 SNPSDPDSYAN 428
S+PSDP SY N
Sbjct: 190 SDPSDPGSYIN 200
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 141 SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIE 200
+ Y+++NI K+ +VD K+ RL Y ++++ + + F+K VL L + K + +
Sbjct: 32 ASYYKENIGKVKTVDDFMKNDRLYRYAMKAYGLEDMTFAKAFMKKVLESDLTDSKSFANK 91
Query: 201 SRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLA 260
D R++ A F F + + TD ++ + + D V D YY
Sbjct: 92 LTDKRYQEFAAAFSFNSATTAVAQTSYQTD-EMVGLYTATLQQQADAVG--EDTRYYNAK 148
Query: 261 INSVSSFSDFLKDPKL 276
I S+++ L + +L
Sbjct: 149 IGSIATVDQLLNNDRL 164
>gi|218674655|ref|ZP_03524324.1| hypothetical protein RetlG_25976 [Rhizobium etli GR56]
Length = 469
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/450 (28%), Positives = 229/450 (50%), Gaps = 20/450 (4%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ ++V+ S S V+ V+ + YY+E I ++T+DEF+ D +L+SYA+K
Sbjct: 1 MVSAYVSYLAVARNLSASLSNVASQATVARDSAYYKENIDKVTTVDEFMGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ FS K QSD+Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLSDSSSFANSLSDGRYAEFAAAFKFSGETKTAQSDVQRD 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+++ Y++S + + + +E+ YF +NI I SVD RL +YVL +F ++ +Y S
Sbjct: 121 SLLDAYEESFETEADAIEDETDYFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTST 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FLKDVLT L + + + D+ + ++A+ F F DGS+ ++++ QI + S Y
Sbjct: 181 SFLKDVLTSDLDDADSFVNQLGDDVYVSLAKAFNFNEDGSVDG--DLMSEDQILLVTSAY 238
Query: 241 FNNTIDCVPIVSDQ------NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
+ I S + Y+ I +++S + D KL L+ + + E +D
Sbjct: 239 ---AVASATIASSETGEAYDTYFAAEIGNITSVDQLMSDDKLVSYLRTAYGLTDDE--SD 293
Query: 295 KFLTLMQENDPIVSQVK---YFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL- 348
F++ ++ I + NF D + Q Q + +N Q+L
Sbjct: 294 TFISAALKSADIADAIGLSDLHDAFNFDEDGALADGDTAQTSDQTAATTAAFDENYQVLI 353
Query: 349 HDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLD 408
+ + + +Y + + SID+ L + ++ + P + + AL A++++ +
Sbjct: 354 ANTDTEDAVDNYTTRIASVTSIDDFLVSNADDDDDDNDDLPEM-WEMALRAFDIDPDSVS 412
Query: 409 RDQLRNVLTSNPSDPDSYANKSKDDRLIKL 438
R ++R +L S+P+D SY N DDR +
Sbjct: 413 RSEVRKILESDPTDAKSYVNSLDDDRFVAF 442
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 41/269 (15%)
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
+A+ AY L + ++ VL S+ SD S+AN D R + AF F+ G
Sbjct: 56 SYAMKAYGLEDMTYAKAFMKKVLESDLSDSSSFANSLSDGRYAEFAAAFKFS-----GET 110
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINT 513
QS + ++ S+ DA +SF + I E DY+ NI +
Sbjct: 111 KTAQSDV-----------QRDSLLDAYEESFETEADA---------IEDETDYFEENIAS 150
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEII 573
I S ++ L++ R+ N++L + G+ ++ FL ++ SDL D SF N D+ Y +
Sbjct: 151 ITSVDDFLSSSRLKNYVLTAFGLSTEYTSTSFLKDVLTSDLDDADSFVNQLGDDVYVSLA 210
Query: 574 SSFNFDIHGE-----LSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFK 628
+FNF+ G +S +I V + + I E + A YF
Sbjct: 211 KAFNFNEDGSVDGDLMSEDQILLVTSAYAV-------ASATIASSETGE----AYDTYFA 259
Query: 629 RTIPNIRNHYEILGDSKLFKVVSKKLKLS 657
I NI + +++ D KL + L+
Sbjct: 260 AEIGNITSVDQLMSDDKLVSYLRTAYGLT 288
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 11/153 (7%)
Query: 506 YYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYK 565
YY NI+ + + +E + + ++ ++ +++ G++ + F+ ++ +SDL D SFAN+
Sbjct: 34 YYKENIDKVTTVDEFMGDYKLYSYAMKAYGLEDMTYAKAFMKKVLESDLSDSSSFANSLS 93
Query: 566 DNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALAL 625
D RY E ++F F GE Q + D D Y+ E E E D
Sbjct: 94 DGRYAEFAAAFKF--SGETK-----TAQSDVQRDSLLDAYE----ESFETEADAIEDETD 142
Query: 626 YFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSP 658
YF+ I +I + + L S+L V LS
Sbjct: 143 YFEENIASITSVDDFLSSSRLKNYVLTAFGLST 175
>gi|241203339|ref|YP_002974435.1| hypothetical protein Rleg_0592 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240857229|gb|ACS54896.1| protein of unknown function DUF1217 [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 1111
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 170/672 (25%), Positives = 297/672 (44%), Gaps = 126/672 (18%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
MI + +A S+D+ S L + V+ V + +YY + I ++++D+F+ D +L+SYA+
Sbjct: 1 MITASLAYTILSRDMTSSL-NKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 60 KAYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNEPAKDVQTDAQE 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I YKQS ++ A ES Y+ I + +VD L + RL YVL++F I P Y S
Sbjct: 120 DDLIGLYKQSFIDADKAASAESSYYGTAIDGVTTVDDLVNNTRLRTYVLKTFKIDPTYAS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FL+ VLT L++P ++++A+A F F DG+++ + T Q ++
Sbjct: 180 KDFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFGFNADGTVNGTAQ--TAAQKASVIET 237
Query: 240 YFNNTIDCV---PIVSD------------QNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Y N+ + + SD + YY I ++++ D + D +L + +
Sbjct: 238 YTLNSQSVIIDNSVGSDVYYVGKTAADYNKAYYTAKIGTITNVDDLVADKRLTSYITTA- 296
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYFFQI----NFHRDNSSSTKIQQDSQIQKMLDL 340
+ + + TA T++ DP +Q+ F + NF D S+S+ +++Q +
Sbjct: 297 YSMGADFTAAALRTVL--TDPGYAQLMGFTNVYNAFNFKADGSTSST----ARVQTV--- 347
Query: 341 YKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAY 400
D+ SL Q K+ + S + ++ + ++ DAY
Sbjct: 348 ----------DQANSL----QAAASGTKNYYTVTSQSSGITNVDALLADNVLARYIKDAY 393
Query: 401 NLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRL 460
L + D L+++LT D A + D LN FNF ADGSI
Sbjct: 394 GLGTSFSNAD-LKSILT----DSTYAAAQGHAD----LNADFNFQADGSING-------- 436
Query: 461 TIRDNVKHYANRKRSIHD--AENKS-FNSMEQISTQKRINLEINSEVDYYTLNINTIHSF 517
+V A +++S D A N + FNSM I + +
Sbjct: 437 ----SVIQTAAQRKSTTDKSAANAAHFNSM-----------------------IGNVTNV 469
Query: 518 EELLANKRILNFLLESKGID---SQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIIS 574
++++++ ++++ S I S FL + + + Y ++
Sbjct: 470 DDIMSDAVAVSYIRNSMQIADSVSDATLRTFLVDRTAASAQ------------GYSDVHD 517
Query: 575 SFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNI 634
FNF G + LY Q + A+Y++ TI I
Sbjct: 518 LFNFKSDGSVPT-----------------LYASQSATQSASTTSKASDAAVYYQATIAGI 560
Query: 635 RNHYEILGDSKL 646
N ++L D KL
Sbjct: 561 SNVDQLLADQKL 572
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 148/574 (25%), Positives = 258/574 (44%), Gaps = 45/574 (7%)
Query: 137 ALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKK 196
A + + Y++ I I++VDQL D++L ++V +F I P ++ L+++LT
Sbjct: 546 ASDAAVYYQATIAGISNVDQLLADQKLNNFVRNAFGI-PSTVTDVALRNILT-------- 596
Query: 197 YFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNY 256
+S + +A F F+ DG+L + T QI T D
Sbjct: 597 --DQSGTGTYADVAGAFNFKADGTLEDGLQAQTATQISSTKFAAEARTDD---------- 644
Query: 257 YKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQ- 315
Y + ++++ D L D + L+ S + L +I+ +++ + +
Sbjct: 645 YSARMATIANVDDLLADSAITNFLK-STYNLPFDISDADLKSILTDATAAAAAGHADLNA 703
Query: 316 -INFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQ---------LP 363
NF D S + +Q Q Q D Y D+ + + +YQ L
Sbjct: 704 DFNFAADGSLPVVSSVQTADQAQTTNDNYAARYDDERDEALDEVASNYQKLMADSSSLLN 763
Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDP 423
+KS+++ L + S + AL A+ L QD+ R +R VLTS+ DP
Sbjct: 764 FSDVKSVNDFLRSNSAADFSKSNDNLPDLYHVALQAFGLTDQDVPRSMMRKVLTSDAYDP 823
Query: 424 DSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKS 483
D Y KD+R+ L AFNF DG T+ Y + +
Sbjct: 824 DGYIASLKDERITNLARAFNFGPDGKAASPFQALPDATLAKYATDYKSHITML------- 876
Query: 484 FNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRE 543
M+ + + + +EVDY+ + + S ++ L + R+ + +L++ +D + +
Sbjct: 877 ---MKDGPVKDKAAKDATAEVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDK 933
Query: 544 DFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCD 603
L +IF SD D KS+ NT D R+++I+++FNFD G L+ KIG +Q+ + T +
Sbjct: 934 ATLKKIFTSDPDDKKSYLNTKADARFQDIVAAFNFDKDGNLTRAKIGTIQNKAAEEHTQE 993
Query: 604 LYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVL 663
LY Q +E ++ E + + LALYF R P+I + Y ILGD L++V++ L + +
Sbjct: 994 LYVQQTMEAQQGESNDGVRLALYFARKAPSITSIYSILGDKALYQVITTAYNLPSQISGM 1053
Query: 664 PERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
K+ +L + +K+ D +D KKV+ L AM
Sbjct: 1054 DVTKQRDLLSRFVKLEDLQDPKKVDKLLRRFTAM 1087
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 54 LFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVI 113
L+ AL+AFGL+D ++K+L SD DP + L + AR+++F P K
Sbjct: 792 LYHVALQAFGLTDQDVPRSMMRKVLTSDAYDPDGYIASLKDERITNLARAFNFGPDGKAA 851
Query: 114 Q-----SDIQHKTIIQDYKQSH-----------QHKEEVALEESKYFRKNIHKINSVDQL 157
D DYK SH + A E YF K + K+ S+D
Sbjct: 852 SPFQALPDATLAKYATDYK-SHITMLMKDGPVKDKAAKDATAEVDYFAKGMAKVKSLDDF 910
Query: 158 FKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQP 217
D RL D VL++ ++ PK LK + T + K Y D RF+ + F F
Sbjct: 911 LDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLNTKADARFQDIVAAFNFDK 970
Query: 218 DGSLSKRDKILT 229
DG+L+ R KI T
Sbjct: 971 DGNLT-RAKIGT 981
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+S+ ++++Q + + YY +IN + S ++ L + ++ ++ +++ G++ +
Sbjct: 17 SSLNKVASQA----TVKKDAQYYADHINKVTSVDDFLGDYKLYSYAMKAYGLEDMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ +SDL DP S+AN D RY+E ++FNF ++ VQ + DD L
Sbjct: 73 FMKKVLESDLTDPNSYANKLSDTRYREFAAAFNF-------NEPAKDVQTDAQEDDLIGL 125
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFA 661
YK I+ + A + Y+ I + +++ +++L V K K+ P +A
Sbjct: 126 YKQSFIDADKAAS----AESSYYGTAIDGVTTVDDLVNNTRLRTYVLKTFKIDPTYA 178
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 136/601 (22%), Positives = 230/601 (38%), Gaps = 128/601 (21%)
Query: 20 STVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILE 79
ST SK S YY+ I IS +D+ + D++L ++ AFG+
Sbjct: 541 STTSK---ASDAAVYYQATIAGISNVDQLLADQKLNNFVRNAFGIPST-----------V 586
Query: 80 SDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALE 139
+D++ L +Q + Y A +++F ++ +Q +T Q S + E +
Sbjct: 587 TDVALRNILTDQSGTGTYADVAGAFNF-KADGTLEDGLQAQTATQ--ISSTKFAAEARTD 643
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
+ + + I +VD L D + +++ ++++ P IS LK +LT A
Sbjct: 644 D---YSARMATIANVDDLLADSAITNFLKSTYNL-PFDISDADLKSILTDATAAAAAGHA 699
Query: 200 ESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF-------NNTIDCVPIVS 252
+ + +F F DGSL + T Q + NY + +D V
Sbjct: 700 D--------LNADFNFAADGSLPVVSSVQTADQAQTTNDNYAARYDDERDEALDEVA--- 748
Query: 253 DQNYYKLAINS--------VSSFSDFLKD-------------PKLFKMLQLSLFPLN--- 288
NY KL +S V S +DFL+ P L+ + L F L
Sbjct: 749 -SNYQKLMADSSSLLNFSDVKSVNDFLRSNSAADFSKSNDNLPDLYH-VALQAFGLTDQD 806
Query: 289 -PEITADKFLT---------LMQENDPIVSQVKYFFQINFHRDNSSSTKIQQ--DSQIQK 336
P K LT + D ++ + F NF D +++ Q D+ + K
Sbjct: 807 VPRSMMRKVLTSDAYDPDGYIASLKDERITNLARAF--NFGPDGKAASPFQALPDATLAK 864
Query: 337 MLDLYKKNCQILHDDK---------MQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAE 387
YK + +L D + + + + K+KS+D+ L +
Sbjct: 865 YATDYKSHITMLMKDGPVKDKAAKDATAEVDYFAKGMAKVKSLDDFL------------D 912
Query: 388 EPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNAD 447
+ +T L A NL+ +D D+ L+ + TS+P D SY N D R + AFNF+ D
Sbjct: 913 DSRLT-DLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLNTKADARFQDIVAAFNFDKD 971
Query: 448 GSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSME--QISTQKRINLEINSEVD 505
G++ R + N+ H E +ME Q + + L +
Sbjct: 972 GNL-----------TRAKIGTIQNKAAEEHTQELYVQQTMEAQQGESNDGVRLAL----- 1015
Query: 506 YYTLNINTIHSFEELLANKRILNFLLES-------KGIDSQKVREDFLCEIFK-SDLKDP 557
Y+ +I S +L +K + + + G+D K R D L K DL+DP
Sbjct: 1016 YFARKAPSITSIYSILGDKALYQVITTAYNLPSQISGMDVTKQR-DLLSRFVKLEDLQDP 1074
Query: 558 K 558
K
Sbjct: 1075 K 1075
>gi|15887995|ref|NP_353676.1| hypothetical protein Atu0653 [Agrobacterium tumefaciens str. C58]
gi|15155605|gb|AAK86461.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 812
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 157/688 (22%), Positives = 302/688 (43%), Gaps = 85/688 (12%)
Query: 31 EERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVN 90
E RYY+ I ++ D+ +++ R +Y + F + + +++ IK ++ SD++DP S +N
Sbjct: 140 ETRYYKAIIGTVTNADQLLRNDRTRAYIFQVFNIDEKTYSYAHIKGLMTSDVNDPNSYIN 199
Query: 91 QLNSLKYQYFARSYDFSPPPKVIQSDIQ-HKTIIQ-------DYKQSHQHKEE-VALEES 141
Q + +Y+ + ++ +I+ H + D + EE LE
Sbjct: 200 Q-------NYGAAYNDAVEKLTMKGNIELHAQVTARITAIDTDLAGTGLTAEERTKLEAE 252
Query: 142 KYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIES 201
K R+N ++ ++ + + D L + +S +
Sbjct: 253 KVTRQN--QLTQLEAVLPPKDQWDAKLAAIKAEQTTLSNAV------------------T 292
Query: 202 RDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS--DQNYYKL 259
+ N+ +A F F+ DG++ D +++ I +Y + P V+ +++Y++
Sbjct: 293 QYNKMAQIANAFEFKNDGTVDAGGAQTAD-KLKAITDSYIGSAPRVTPTVATLNRDYFES 351
Query: 260 AINSVSSFSDFLKDPKL-------FKMLQLSLFPLNPE--ITAD-----KFLTLMQENDP 305
I S+++ + + D +L F + L++ P + +T+D ++ M +ND
Sbjct: 352 KIGSITTVEELMSDARLLNYVRTAFDLNDLTIVPATIKNILTSDLSDPNNYIATMGKNDK 411
Query: 306 IVSQVKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLP 363
+K F NF D + + T Q +Q Y + D + ++
Sbjct: 412 RYLALKNAF--NFLPDGTLAAGTTPQTTTQTATTTSGYMTHYNDADDAADAKALSLFKSS 469
Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDP 423
+ K+ S+++ L G N+ +AL A L+ ++ ++ VLTS+ D
Sbjct: 470 ISKVTSVNDFL-------GTNAV------YTYALRAVGLDPAKVNISDIQRVLTSDLQDK 516
Query: 424 DSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKS 483
SY KDDR +KL FNF DGS+G + QS + ++ Y +K + ++K
Sbjct: 517 KSYVYTLKDDRYVKLAELFNFTKDGSVGSPILAQSEIELQTMSADYIKKKSAFGTEKDKE 576
Query: 484 FNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRE 543
+E Y++ + I + E LAN R+ F +ES GID + V +
Sbjct: 577 ---------------AAQTEAKYFSGEMQKIKTLSEFLANDRLTKFAMESLGIDPKSVTK 621
Query: 544 DFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCD 603
+ L +IF S+L D S+ N D ++ ++++FNFD G+L H+ +Q + +T D
Sbjct: 622 EQLQKIFTSNLDDKNSYVNKEMDPVFRRLVTAFNFDTEGKLLHEDRSAIQTRRGLYETLD 681
Query: 604 LYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVL 663
Y Q +E + E++ + LALYFKR ++Y IL D+ + + +
Sbjct: 682 NYLTQTLESQAGEENAGVRLALYFKRMAAGTTSYYSILADTAIQNFIKTTFGIPDELGNA 741
Query: 664 PERKKIRILKKHIKINDFKDSKKVEDFL 691
++ ++KK+ I DF+D KV+ +
Sbjct: 742 NVDTQVAMMKKYFDIKDFQDPDKVKKLI 769
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 115/186 (61%), Gaps = 1/186 (0%)
Query: 12 KDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAE 71
+D++S + S VS+ +V + +YY+E I ++ ++DEF+ + +L+SYA+ AFGL +M++A+
Sbjct: 13 RDMKSSI-SRVSQQGLVERQTKYYKENIGNVKSVDEFLGNYQLYSYAMDAFGLGEMTYAK 71
Query: 72 KFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQ 131
F+KK+LESDL+D S N+L +Y+ FA S++F+ K +Q+D Q +I Y S
Sbjct: 72 AFMKKVLESDLNDQNSFANKLTDERYREFAASFNFTASTKTVQTDAQLDKMIGLYDTSIT 131
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
+ EE++Y++ I + + DQL ++ R Y+ Q F+I K S +K ++T +
Sbjct: 132 NLNGSLAEETRYYKAIIGTVTNADQLLRNDRTRAYIFQVFNIDEKTYSYAHIKGLMTSDV 191
Query: 192 ANPKKY 197
+P Y
Sbjct: 192 NDPNSY 197
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 129/281 (45%), Gaps = 23/281 (8%)
Query: 26 PIVSCEER-YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSD 84
P V+ R Y+ +I I+T++E + D RL +Y AF L+D++ IK IL SDLSD
Sbjct: 339 PTVATLNRDYFESKIGSITTVEELMSDARLLNYVRTAFDLNDLTIVPATIKNILTSDLSD 398
Query: 85 PKSLVNQL--NSLKYQYFARSYDFSPPPKVIQSDIQHKTI---------IQDYKQSHQHK 133
P + + + N +Y +++F P + T + Y +
Sbjct: 399 PNNYIATMGKNDKRYLALKNAFNFLPDGTLAAGTTPQTTTQTATTTSGYMTHYNDADDAA 458
Query: 134 EEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLAN 193
+ AL F+ +I K+ SV+ + Y L++ + P +++ ++ VLT L +
Sbjct: 459 DAKALS---LFKSSISKVTSVNDFLGTNAVYTYALRAVGLDPAKVNISDIQRVLTSDLQD 515
Query: 194 PKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY------FNNTIDC 247
K Y +D+R+ +AE F F DGS+ ++++++ + ++Y F D
Sbjct: 516 KKSYVYTLKDDRYVKLAELFNFTKDGSVGSPILAQSEIELQTMSADYIKKKSAFGTEKDK 575
Query: 248 VPIVSDQNYYKLAINSVSSFSDFLKDPKL--FKMLQLSLFP 286
++ Y+ + + + S+FL + +L F M L + P
Sbjct: 576 EAAQTEAKYFSGEMQKIKTLSEFLANDRLTKFAMESLGIDP 616
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 112/560 (20%), Positives = 227/560 (40%), Gaps = 76/560 (13%)
Query: 112 VIQSDIQHKTIIQDYKQSHQHKEEVALEE--SKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
++ + + + I +D K S + L E +KY+++NI + SVD+ + +L Y +
Sbjct: 1 MVSTFLSYDLINRDMKSSISRVSQQGLVERQTKYYKENIGNVKSVDEFLGNYQLYSYAMD 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+F + + F+K VL L + + + D R+R A +F F + + T
Sbjct: 61 AFGLGEMTYAKAFMKKVLESDLNDQNSFANKLTDERYREFAASFNFT-----ASTKTVQT 115
Query: 230 DMQIEKIVSNYFNNTIDC-VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLN 288
D Q++K++ Y + + + + YYK I +V++
Sbjct: 116 DAQLDKMIGLYDTSITNLNGSLAEETRYYKAIIGTVTN---------------------- 153
Query: 289 PEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQIL 348
AD+ L ND + + F I+ + + K S + +N
Sbjct: 154 ----ADQLL----RNDRTRAYIFQVFNIDEKTYSYAHIKGLMTSDVNDPNSYINQNYGAA 205
Query: 349 HDDKMQSLIKDYQLPL-----GKIKSIDNLLSG-KCQLEGPNSAEEPIITLQFALDAYNL 402
++D ++ L + L +I +ID L+G E E +T Q L L
Sbjct: 206 YNDAVEKLTMKGNIELHAQVTARITAIDTDLAGTGLTAEERTKLEAEKVTRQNQLT--QL 263
Query: 403 NMQDLDRDQLRNVLTSNPSDPDSYANK-SKDDRLIKLNHAFNFNADGSIGPIPMMQSRLT 461
+DQ L + ++ + +N ++ +++ ++ +AF F DG T
Sbjct: 264 EAVLPPKDQWDAKLAAIKAEQTTLSNAVTQYNKMAQIANAFEFKNDG------------T 311
Query: 462 IRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINS-EVDYYTLNINTIHSFEEL 520
+ A++ ++I D+ I + R+ + + DY+ I +I + EEL
Sbjct: 312 VDAGGAQTADKLKAITDS---------YIGSAPRVTPTVATLNRDYFESKIGSITTVEEL 362
Query: 521 LANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYK--DNRYKEIISSFNF 578
+++ R+LN++ + ++ + + I SDL DP ++ T D RY + ++FNF
Sbjct: 363 MSDARLLNYVRTAFDLNDLTIVPATIKNILTSDLSDPNNYIATMGKNDKRYLALKNAFNF 422
Query: 579 DIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHY 638
G L+ + + + + + + K AL+L FK +I + +
Sbjct: 423 LPDGTLAAGTTPQTTTQTATTTSGYMTHYNDADDAADAK----ALSL-FKSSISKVTSVN 477
Query: 639 EILGDSKLFKVVSKKLKLSP 658
+ LG + ++ + + L P
Sbjct: 478 DFLGTNAVYTYALRAVGLDP 497
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKIL 78
F T E +Y+ ++ I T+ EF+ + RL +A+++ G+ S ++ ++KI
Sbjct: 569 FGTEKDKEAAQTEAKYFSGEMQKIKTLSEFLANDRLTKFAMESLGIDPKSVTKEQLQKIF 628
Query: 79 ESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYK----------- 127
S+L D S VN+ ++ +++F K++ D ++ IQ +
Sbjct: 629 TSNLDDKNSYVNKEMDPVFRRLVTAFNFDTEGKLLHED---RSAIQTRRGLYETLDNYLT 685
Query: 128 ---QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSI 173
+S +E + + YF++ S + D + +++ +F I
Sbjct: 686 QTLESQAGEENAGVRLALYFKRMAAGTTSYYSILADTAIQNFIKTTFGI 734
>gi|325292035|ref|YP_004277899.1| hypothetical protein AGROH133_04160 [Agrobacterium sp. H13-3]
gi|325059888|gb|ADY63579.1| hypothetical protein AGROH133_04160 [Agrobacterium sp. H13-3]
Length = 812
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 160/655 (24%), Positives = 303/655 (46%), Gaps = 59/655 (9%)
Query: 12 KDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAE 71
+D+++ + S VS+ IV + +YY+E I ++ ++DEF+ + +L+SYA+ AFGL +M++A+
Sbjct: 13 RDMKASI-SRVSQQGIVERQTKYYKENIGNVKSVDEFLNNYQLYSYAMDAFGLGEMTYAK 71
Query: 72 KFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQ 131
F+KK+LESDL+D S N+L +Y+ FA S++F+ +Q++ Q +I Y S
Sbjct: 72 AFMKKVLESDLNDQNSFANKLTDERYREFAASFNFTQSTTTVQTEAQLDKMIGLYDTSIT 131
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
+ ++ EE++Y++ I + +VDQL ++ R Y+ + FSI K S +K ++T +
Sbjct: 132 NLDDSLSEETRYYKAIIGTVTNVDQLLQNDRTRAYIFEVFSIDEKTYSYSHIKGLMTSDI 191
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIV 251
+P Y + + A E + G++ + TD +I I + + T+
Sbjct: 192 DDPNSYLNQKFGAAYSAAVE--KLTTKGNIELHGDV-TD-RITAIDTALADTTLTAEQRT 247
Query: 252 SDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVK 311
+ + + ++ L + S+ +++ T+ Q N ++Q+
Sbjct: 248 ALETEKTTRQDQLTQLEAVLPPKDQWAATLASITAEQTQLSN----TVSQYN--TMAQMA 301
Query: 312 YFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY-QLPLGKIKSI 370
F+ F D + + Q + K+L + +L +DY + +G IK++
Sbjct: 302 QAFE--FANDGTVAAGQAQTADNVKILTQAYVGSAPRVTPTVATLNRDYFESKIGSIKTV 359
Query: 371 DNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANK- 429
D L++ +P + + + A++LN + + N+LTS+ SDP++Y K
Sbjct: 360 DELMA------------DPRL-VNYIKVAFDLNDLTIVNATIENILTSDLSDPNNYIAKF 406
Query: 430 -SKDDRLIKLNHAFNFNADGSI--GPIPMMQSRLTIRDN--VKHYANRKRSIHDAENKSF 484
+ D R I L AFNF ADG++ G P ++ N + HY ++ + + K F
Sbjct: 407 GNGDKRYIALREAFNFKADGTLPDGTAPQTTTQTVTTTNGYMNHYNDKDEAADENALKLF 466
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
S +I + S + L + + + L++ G+D KV
Sbjct: 467 KS-----------------------DIANVKSVADFLESSAVYTYALKAVGLDPTKVNIA 503
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD-TCD 603
+ SDL D KS+ KD+RY ++ FNF G + Q I + D
Sbjct: 504 DVRRALTSDLLDKKSYVYALKDDRYVKLAELFNFKSDGSPGSPVLA--QSELEIQSMSVD 561
Query: 604 LYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSP 658
K + ++EK+ A +F+ + ++ + LG+ +L K + L + P
Sbjct: 562 YIKKKSAFGTDQEKEAAKKEAEFFRSELQKVKTLSDFLGNDRLTKFAMESLGIDP 616
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 159/689 (23%), Positives = 290/689 (42%), Gaps = 75/689 (10%)
Query: 25 DPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSD 84
D +S E RYY+ I ++ +D+ +++ R +Y + F + + +++ IK ++ SD+ D
Sbjct: 134 DDSLSEETRYYKAIIGTVTNVDQLLQNDRTRAYIFEVFSIDEKTYSYSHIKGLMTSDIDD 193
Query: 85 PKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQ-HKTIIQDYKQSHQHKEEVALEESKY 143
P S +NQ F +Y + + +I+ H + + L +
Sbjct: 194 PNSYLNQ-------KFGAAYSAAVEKLTTKGNIELHGDVTDRITAIDTALADTTLTAEQR 246
Query: 144 FRKNIHKINSVDQLFKDRRLL----DYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
K DQL + +L + SIT + L
Sbjct: 247 TALETEKTTRQDQLTQLEAVLPPKDQWAATLASITAEQTQLSN----------------T 290
Query: 200 ESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS--DQNYY 257
S+ N MA+ F F DG+++ D ++ + Y + P V+ +++Y+
Sbjct: 291 VSQYNTMAQMAQAFEFANDGTVAAGQAQTAD-NVKILTQAYVGSAPRVTPTVATLNRDYF 349
Query: 258 KLAINSVSSFSDFLKDPKLFKMLQLSLFPLNP----EITADKFLT--LMQENDPIV---- 307
+ I S+ + + + DP+L ++++ F LN T + LT L N+ I
Sbjct: 350 ESKIGSIKTVDELMADPRLVNYIKVA-FDLNDLTIVNATIENILTSDLSDPNNYIAKFGN 408
Query: 308 SQVKYFF---QINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL 362
+Y NF D + T Q +Q + Y + + ++ +K ++
Sbjct: 409 GDKRYIALREAFNFKADGTLPDGTAPQTTTQTVTTTNGYMNHYNDKDEAADENALKLFKS 468
Query: 363 PLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSD 422
+ +KS+ + L E +AL A L+ ++ +R LTS+ D
Sbjct: 469 DIANVKSVADFL-------------ESSAVYTYALKAVGLDPTKVNIADVRRALTSDLLD 515
Query: 423 PDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENK 482
SY KDDR +KL FNF +DGS G + QS L I+ Y +K
Sbjct: 516 KKSYVYALKDDRYVKLAELFNFKSDGSPGSPVLAQSELEIQSMSVDYIKKK--------S 567
Query: 483 SFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVR 542
+F + ++ K+ SE + + + + L N R+ F +ES GID KV
Sbjct: 568 AFGTDQEKEAAKKEAEFFRSE-------LQKVKTLSDFLGNDRLTKFAMESLGIDPTKVT 620
Query: 543 EDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTC 602
+D L ++F S+L D S+ N D ++ ++++FNFD G + + +Q + +T
Sbjct: 621 KDQLQKMFTSNLDDKDSYLNKEMDPAFRRLVTAFNFDTDGNILREDRSSIQTRRGLYETL 680
Query: 603 DLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAV 662
D Y Q +E + E++ + LALYFKR ++Y IL D+ + ++ +
Sbjct: 681 DNYLTQTLETQAGEENAGVRLALYFKRMAAGTTSYYSILADTAIQNFITTTFGIPDELGN 740
Query: 663 LPERKKIRILKKHIKINDFKDSKKVEDFL 691
++ ++KK+ I DF+D KV+ +
Sbjct: 741 AGVDTQVAMMKKYFDIEDFQDPDKVKKLI 769
>gi|218461856|ref|ZP_03501947.1| hypothetical protein RetlK5_21288 [Rhizobium etli Kim 5]
Length = 256
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 140/223 (62%), Gaps = 2/223 (0%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
MI + +A SKD+ S L + V+ V + +YY + I ++++D+F+ D +L+SYA+
Sbjct: 23 MITASLAYSILSKDMTSSL-NKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAM 81
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 82 KAYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDARYREFAAAFNFNAPEKDVQTDAQE 141
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I YKQS ++ + ES Y+ NI + +VD L + RL YVL++F I P Y S
Sbjct: 142 DELIGLYKQSFVDADKASAAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYAS 201
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLS 222
FL+ VLT L++P ++++A+A F F DG+++
Sbjct: 202 KDFLRQVLTSDLSDPASVVNTQGGDKYKALAAQFSFNADGTVT 244
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 108/222 (48%), Gaps = 38/222 (17%)
Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDP 423
+ K+ S+D+ L G +L +A+ AY L + ++ VL S+ +DP
Sbjct: 61 INKVTSVDDFL-GDYKL------------YSYAMKAYGLEDMTYAKAFMKKVLESDLTDP 107
Query: 424 DSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKS 483
+SYANK D R + AFNFNA P +Q+ + + Y K+S DA+ S
Sbjct: 108 NSYANKLSDARYREFAAAFNFNA-----PEKDVQTDAQEDELIGLY---KQSFVDADKAS 159
Query: 484 FNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRE 543
+E YY+ NI+++ + ++L+ N R+ ++L++ ID +
Sbjct: 160 -----------------AAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYASK 202
Query: 544 DFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELS 585
DFL ++ SDL DP S NT ++YK + + F+F+ G ++
Sbjct: 203 DFLRQVLTSDLSDPASVVNTQGGDKYKALAAQFSFNADGTVT 244
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 92/177 (51%), Gaps = 15/177 (8%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+S+ ++++Q + + YY +IN + S ++ L + ++ ++ +++ G++ +
Sbjct: 39 SSLNKVASQA----TVKKDAQYYADHINKVTSVDDFLGDYKLYSYAMKAYGLEDMTYAKA 94
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ +SDL DP S+AN D RY+E ++FNF+ + VQ + D+ L
Sbjct: 95 FMKKVLESDLTDPNSYANKLSDARYREFAAAFNFNAPEK-------DVQTDAQEDELIGL 147
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFA 661
YK ++ + + A + Y+ I +++ +++ +++L V K K+ P +A
Sbjct: 148 YKQSFVDADK----ASAAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYA 200
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 27/228 (11%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ K +++ N + D YY IN V+S DFL D KL+ + + L
Sbjct: 33 LSKDMTSSLNKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYS-YAMKAYGLEDMTY 91
Query: 293 ADKFLTLMQENDPI--------VSQVKYF-FQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
A F+ + E+D +S +Y F F+ N+ +Q D+Q +++ LYK+
Sbjct: 92 AKAFMKKVLESDLTDPNSYANKLSDARYREFAAAFNF-NAPEKDVQTDAQEDELIGLYKQ 150
Query: 344 NCQILHDDKMQSLIKDYQL-PLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNL 402
+ + DK + Y + ++++D+L++ +L + L + +
Sbjct: 151 S--FVDADKASAAESTYYSNNIDSVQTVDDLVNN-TRLR------------TYVLKTFKI 195
Query: 403 NMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSI 450
+ +D LR VLTS+ SDP S N D+ L F+FNADG++
Sbjct: 196 DPTYASKDFLRQVLTSDLSDPASVVNTQGGDKYKALAAQFSFNADGTV 243
>gi|319781688|ref|YP_004141164.1| hypothetical protein Mesci_1961 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167576|gb|ADV11114.1| protein of unknown function DUF1217 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 603
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 150/601 (24%), Positives = 250/601 (41%), Gaps = 78/601 (12%)
Query: 119 HKTIIQDYKQSHQHKEE--VALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ I +D +S E+ V ++KY+ NI K+ S+D K+ RL Y ++++ +
Sbjct: 8 YQLITRDISKSIDRIEQQPVVDRDTKYYLDNITKVKSIDDFVKNDRLFKYAMKAYGLEDM 67
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKI 236
+ F+ L G+++P + + D R+ F F +G+ + + + +
Sbjct: 68 AYAKAFMVKALKEGVSDPNSFANKLTDKRYAEFVRAFNFAANGT----STTVYNKAQQLV 123
Query: 237 VSNY-----FNNTIDCVPIV-SDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPE 290
SNY + +P S+ YY I V S D + D +L ++ F L+
Sbjct: 124 TSNYALQVQIGASQKGLPYYQSETAYYVTNIAKVKSVDDLMGDSRLLT-YAMAAFGLDAA 182
Query: 291 ITADKFLTLMQEND-----------PIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLD 339
+ M E P S K+ +F + +T ++ D Q Q +
Sbjct: 183 TEPAATVKAMLEGGVSDPDSPANKLPDKSYAKFVAAFDFAQYGDQTT-MRDDVQ-QAVPK 240
Query: 340 LYKKNCQILHDDKMQSLIKD----YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQF 395
Y + + IK Y + K+ SIDNL++ K L F
Sbjct: 241 GYMAGAGLTLVEPSAQYIKGEADYYAANISKVTSIDNLMADKR-------------LLTF 287
Query: 396 ALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPM 455
A+ +Y L+ Q+R +L SDP+S ANK D R AFNF G
Sbjct: 288 AMASYGLDASTETPQQIRTMLEGGVSDPESPANKLTDKRYANFVTAFNFAQYGD------ 341
Query: 456 MQSRLTIRDNV-----KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLN 510
+ T RD V K Y A N + I SE YY N
Sbjct: 342 ---QTTSRDEVQKDTPKIYTTESALGLIAPNADY---------------IKSETAYYLAN 383
Query: 511 INTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYK 570
+ + S ++L+AN R+ N++L + G+D +D + + ++D S AN + Y
Sbjct: 384 VTNVKSVDDLMANSRLYNYVLSAYGLDPATESKDLIRNVLAGGIRDADSVANKMTNKAYA 443
Query: 571 EIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRT 630
+ ++FNF+ +GE + I Q T D Y Q +E+ + + + LALYF R
Sbjct: 444 GLAAAFNFEQYGE-AATTINPAQ-----QPTVDKYMRQTLEEDAGQTNQGVRLALYFDRK 497
Query: 631 IPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDF 690
P I + Y++L D+ L VV L L FA K+ ++ ++ + I+DF D +K+ F
Sbjct: 498 APTITSWYDVLADTALASVVRTVLGLPDSFATADVDKQAQLFEQKLDISDFSDPEKLGKF 557
Query: 691 L 691
L
Sbjct: 558 L 558
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 121/469 (25%), Positives = 202/469 (43%), Gaps = 56/469 (11%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
++DI SK + + P+V + +YY + I + +ID+F+K+ RLF YA+KA+GL DM++A
Sbjct: 12 TRDI-SKSIDRIEQQPVVDRDTKYYLDNITKVKSIDDFVKNDRLFKYAMKAYGLEDMAYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVI------QSDIQHKTIIQ 124
+ F+ K L+ +SDP S N+L +Y F R+++F+ Q + +Q
Sbjct: 71 KAFMVKALKEGVSDPNSFANKLTDKRYAEFVRAFNFAANGTSTTVYNKAQQLVTSNYALQ 130
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
+ Q E+ Y+ NI K+ SVD L D RLL Y + +F + +K
Sbjct: 131 VQIGASQKGLPYYQSETAYYVTNIAKVKSVDDLMGDSRLLTYAMAAFGLDAATEPAATVK 190
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDG-SLSKRDKILTDMQIEKIVSNYFNN 243
+L G+++P + D + F F G + RD D+Q + + Y
Sbjct: 191 AMLEGGVSDPDSPANKLPDKSYAKFVAAFDFAQYGDQTTMRD----DVQ-QAVPKGYMAG 245
Query: 244 T-IDCVP-----IVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
+ V I + +YY I+ V+S + + D +L S + L+ + +
Sbjct: 246 AGLTLVEPSAQYIKGEADYYAANISKVTSIDNLMADKRLLTFAMAS-YGLDASTETPQQI 304
Query: 298 TLMQEN---DP-----------IVSQVKYFFQINFHRDNSSSTKIQQDS----QIQKMLD 339
M E DP + V F + +S ++Q+D+ + L
Sbjct: 305 RTMLEGGVSDPESPANKLTDKRYANFVTAFNFAQYGDQTTSRDEVQKDTPKIYTTESALG 364
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
L N D ++S Y + +KS+D+L++ +L + L A
Sbjct: 365 LIAPNA-----DYIKSETAYYLANVTNVKSVDDLMA-NSRL------------YNYVLSA 406
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADG 448
Y L+ +D +RNVL D DS ANK + L AFNF G
Sbjct: 407 YGLDPATESKDLIRNVLAGGIRDADSVANKMTNKAYAGLAAAFNFEQYG 455
>gi|255601155|ref|XP_002537616.1| conserved hypothetical protein [Ricinus communis]
gi|223515719|gb|EEF24767.1| conserved hypothetical protein [Ricinus communis]
Length = 386
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/343 (28%), Positives = 172/343 (50%), Gaps = 16/343 (4%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
+ +Y+ + +K+I + + + P + Q AL AY + ++ + +L +L
Sbjct: 16 VNNYKNRIASVKTIKDFFASNTSDSSAANDSAPEL-YQMALRAYGIGENEVTKSRLTKIL 74
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSI-GPIPMMQSRLTIRDNVKHYANRKRS 475
S+P DP SY N KD R L AFNF++ G++ P+ + S+ I + Y++R +
Sbjct: 75 ESDPYDPKSYVNSLKDSRFTALAKAFNFDSKGNLKAPVQSL-SQTQINSYISEYSSRTTA 133
Query: 476 -IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
+ AE + + + Y+ NI + S +LLA+ ++ NF+L +
Sbjct: 134 GLSGAE------------LTKATSDAKTAGTYFATNIVKVTSVTDLLADSKLTNFILTAN 181
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
ID + V L + F SD D KSF NT ++K I+ +FNF G L+ K+G Q+
Sbjct: 182 SIDPKTVDTATLKKAFASDPSDSKSFINTTDGAKFKSIVEAFNFGTDGNLTDSKLGTAQN 241
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
+ T DL+ HQ +E ++ E +P + LALYF+R +I + Y+I+GDS L++V++
Sbjct: 242 QGALAATNDLFLHQTLEDQQGETNPGVRLALYFQRKASDINSIYDIMGDSALYEVITTTY 301
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
L + + + +L K + ++D +D KV L AM
Sbjct: 302 NLPSSISNMDVDTQASMLSKFVNVSDLQDPDKVNQLLQRFSAM 344
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Query: 20 STVSKDPIVSCEERYYRERIKHISTIDEFIKDK------------RLFSYALKAFGLSDM 67
ST++ D + Y+ RI + TI +F L+ AL+A+G+ +
Sbjct: 9 STLTTDAV-----NNYKNRIASVKTIKDFFASNTSDSSAANDSAPELYQMALRAYGIGEN 63
Query: 68 SHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH--KTIIQD 125
+ + KILESD DPKS VN L ++ A++++F +++ +Q +T I
Sbjct: 64 EVTKSRLTKILESDPYDPKSYVNSLKDSRFTALAKAFNFDSKGN-LKAPVQSLSQTQINS 122
Query: 126 YKQSHQHKEEVALEESK-------------YFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
Y + + L ++ YF NI K+ SV L D +L +++L + S
Sbjct: 123 YISEYSSRTTAGLSGAELTKATSDAKTAGTYFATNIVKVTSVTDLLADSKLTNFILTANS 182
Query: 173 ITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLS 222
I PK + LK ++ K + + +F+++ E F F DG+L+
Sbjct: 183 IDPKTVDTATLKKAFASDPSDSKSFINTTDGAKFKSIVEAFNFGTDGNLT 232
>gi|163761036|ref|ZP_02168114.1| hypothetical protein HPDFL43_03334 [Hoeflea phototrophica DFL-43]
gi|162281817|gb|EDQ32110.1| hypothetical protein HPDFL43_03334 [Hoeflea phototrophica DFL-43]
Length = 961
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 162/294 (55%), Gaps = 13/294 (4%)
Query: 395 FALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIP 454
FA+ A L+ ++ + +R VLTS+ DP+SY KD+R +K + FNF+++G + P
Sbjct: 632 FAMQAAELDPNEIPQRIMRKVLTSDLQDPNSYVYTLKDERYVKFANLFNFDSEG-VATAP 690
Query: 455 MM-QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINT 513
+ Q + + D + Y +K F + E+ +T + + +E YY ++
Sbjct: 691 LTAQDQARMDDISRDYIVQK--------TRFLTGEEAATARS---DAEAEASYYQRTVSN 739
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEII 573
I + ++LL N+R+++F L +KGID + V D L +F+SDL DP S+ANT D R E++
Sbjct: 740 IETLDQLLGNRRLIDFALTAKGIDPETVSNDELQLLFRSDLDDPDSYANTVSDFRLTEVV 799
Query: 574 SSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPN 633
+SFNFD G+L + ++ + +T +LY Q IE + E+D + LALYF+R P
Sbjct: 800 TSFNFDEAGKLMQRDAAEISSRGDLYETMNLYLRQTIELERGEEDNGVRLALYFERMAPT 859
Query: 634 IRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKV 687
I + Y+ILGD+ L++V L + + + +L+ + + D D +K+
Sbjct: 860 ITSVYDILGDTALYEVFKTIFSLPDEISGMSVDSQAALLEDRMDMADLADPEKL 913
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 133/557 (23%), Positives = 245/557 (43%), Gaps = 86/557 (15%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
++D+++++ + VS+ VS E Y++E I + + +EF+ D RL+SYA+KA GL DM +A
Sbjct: 12 AQDLKAEM-NRVSQQTQVSRETAYFKENIGKVRSAEEFVGDYRLYSYAMKAHGLEDMIYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSH 130
E F+ K+LESDLSD S N+L +Y+ FA ++ F KV S Q I Y ++
Sbjct: 71 EAFMLKVLESDLSDSDSYANRLTDSRYRDFAAAFQFEDGSKVPMSVNQIDEAIGLYDETV 130
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLG 190
++ E Y+ + +VDQ D RL D++ QS+ I + FL+ +L
Sbjct: 131 ASLDDKISGEVNYYNAMAGLVENVDQFLADPRLFDFITQSYGIDGSTVDRTFLRGILASD 190
Query: 191 LANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQI------EKIVSNYFNNT 244
+P Y + + N R + +LS IL D+ +K +
Sbjct: 191 PDDPNSYLNTN-------LIAN-RTSSETTLSTAQPILNDIAARQSEVDDKATMVAYGEG 242
Query: 245 IDCVPIVSDQNYYKLA-----INSVSSFSDFLKD---PKLFKMLQLSLFPLNPEITADKF 296
I + D+ + + + S+ + D L D ++L++ E +A
Sbjct: 243 IVSIQAAIDEALVRQSEPGADVASIQTEIDVLTDGLHTTYRNFIELAMIDFREEESA--L 300
Query: 297 LTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQ---------QDSQIQKMLDLYKKNCQI 347
+ EN P ++ ++ + + D + I + S+ Q+ DL QI
Sbjct: 301 IADGLENSPEMTALRNKIDV-WTADTDARWTISTSLNEIVELEASKTQEGADLAAIQSQI 359
Query: 348 LHDDKMQSLIKDYQLPLGKIKS-IDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
D ++ I + L S ID+ ++ K A+ AY ++ +
Sbjct: 360 ---DALRVTITGAEANLTLTTSDIDDAVAAK----------------DVAIAAYT-DLPE 399
Query: 407 L--DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRD 464
L D +QL L ++ + +Y N + D+ + L +A+NFN DG++ P Q+ +
Sbjct: 400 LGDDTNQLAAQLNTDVAAARNYINAT--DKYLALAYAYNFNDDGTV-PAGGFQTEAELEA 456
Query: 465 NVKHYANRKRSIHDAENKSFNSMEQISTQKRINLE---INSEVDYYTLNINTIHSFEELL 521
+ Y +++Q R+ L +N DY+ I + + EE++
Sbjct: 457 TTELY--------------------VTSQDRLTLTGAMLND--DYFRETIGSFTTAEEMM 494
Query: 522 ANKRILNFLLESKGIDS 538
++RI+++L + +D+
Sbjct: 495 EDERIVSYLKSAFNLDT 511
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 146/322 (45%), Gaps = 31/322 (9%)
Query: 2 IPSHVAPFPSKD---IQSKLFSTVSKDPIVSCEERYYRERIKHI------STIDEFIKDK 52
+P + P +++ + S+ FS + +E R +I + +T+++
Sbjct: 568 LPDGLQPVDAENQSVLSSRYFSGYDDADEAADQEAIRRMQIDLVGLNTEGATVEDLFNSS 627
Query: 53 RLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-----S 107
++S+A++A L ++ ++K+L SDL DP S V L +Y FA ++F +
Sbjct: 628 AVYSFAMQAAELDPNEIPQRIMRKVLTSDLQDPNSYVYTLKDERYVKFANLFNFDSEGVA 687
Query: 108 PPPKVIQSDIQHKTIIQDY---KQSHQHKEEVALE------ESKYFRKNIHKINSVDQLF 158
P Q + I +DY K EE A E+ Y+++ + I ++DQL
Sbjct: 688 TAPLTAQDQARMDDISRDYIVQKTRFLTGEEAATARSDAEAEASYYQRTVSNIETLDQLL 747
Query: 159 KDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPD 218
+RRL+D+ L + I P+ +S L+ + L +P Y D R + +F F
Sbjct: 748 GNRRLIDFALTAKGIDPETVSNDELQLLFRSDLDDPDSYANTVSDFRLTEVVTSFNFDEA 807
Query: 219 GSLSKRD--KILTDMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFL 271
G L +RD +I + + + ++ Y TI+ D Y++ +++S D L
Sbjct: 808 GKLMQRDAAEISSRGDLYETMNLYLRQTIELERGEEDNGVRLALYFERMAPTITSVYDIL 867
Query: 272 KDPKLFKMLQLSLFPLNPEITA 293
D L+++ + ++F L EI+
Sbjct: 868 GDTALYEVFK-TIFSLPDEISG 888
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 117/271 (43%), Gaps = 56/271 (20%)
Query: 412 LRNVLTSNPSDPDS----------YANKSKDDRLIKLNHAFNFNADGSI--GPIPMMQSR 459
L N +TS +D D + K D L+ L+ AFNF DG++ G P+
Sbjct: 520 LENAITSPATDADLEDETNYLVAFHKGKPYFDDLVALSRAFNFEEDGTLPDGLQPV---- 575
Query: 460 LTIRDNVKHYANRKRSIHDAENKS---------FNSMEQISTQKRINLEINSEVDYYTLN 510
DAEN+S ++ ++ + Q+ I ++D LN
Sbjct: 576 ------------------DAENQSVLSSRYFSGYDDADEAADQEAIR---RMQIDLVGLN 614
Query: 511 INTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYK 570
+ E+L + + +F +++ +D ++ + + ++ SDL+DP S+ T KD RY
Sbjct: 615 TEG-ATVEDLFNSSAVYSFAMQAAELDPNEIPQRIMRKVLTSDLQDPNSYVYTLKDERYV 673
Query: 571 EIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMI-----EKKEEEKDPNIALAL 625
+ + FNFD G + QD +DD Y Q E+ + A A
Sbjct: 674 KFANLFNFDSEGVATAPL--TAQDQARMDDISRDYIVQKTRFLTGEEAATARSDAEAEAS 731
Query: 626 YFKRTIPNIRNHYEILGDSKL--FKVVSKKL 654
Y++RT+ NI ++LG+ +L F + +K +
Sbjct: 732 YYQRTVSNIETLDQLLGNRRLIDFALTAKGI 762
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 415 VLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKR 474
VL S+ SD DSYAN+ D R AF F DGS P+ + Q I + + Y
Sbjct: 77 VLESDLSDSDSYANRLTDSRYRDFAAAFQFE-DGSKVPMSVNQ----IDEAIGLYDETVA 131
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S+ D +I+ EV+YY + + ++ LA+ R+ +F+ +S
Sbjct: 132 SLDD--------------------KISGEVNYYNAMAGLVENVDQFLADPRLFDFITQSY 171
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANT 563
GID V FL I SD DP S+ NT
Sbjct: 172 GIDGSTVDRTFLRGILASDPDDPNSYLNT 200
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 487 MEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFL 546
M ++S Q +++ E Y+ NI + S EE + + R+ ++ +++ G++ E F+
Sbjct: 19 MNRVSQQT----QVSRETAYFKENIGKVRSAEEFVGDYRLYSYAMKAHGLEDMIYAEAFM 74
Query: 547 CEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
++ +SDL D S+AN D+RY++ ++F F+
Sbjct: 75 LKVLESDLSDSDSYANRLTDSRYRDFAAAFQFE 107
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 30 CEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLV 89
E YY+ + +I T+D+ + ++RL +AL A G+ + + ++ + SDL DP S
Sbjct: 728 AEASYYQRTVSNIETLDQLLGNRRLIDFALTAKGIDPETVSNDELQLLFRSDLDDPDSYA 787
Query: 90 NQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQS-----------HQHKEEVAL 138
N ++ + S++F K++Q D + D ++ + +E+ +
Sbjct: 788 NTVSDFRLTEVVTSFNFDEAGKLMQRDAAEISSRGDLYETMNLYLRQTIELERGEEDNGV 847
Query: 139 EESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS-------LPFLKDVLTLG- 190
+ YF + I SV + D L + FS+ P IS L+D + +
Sbjct: 848 RLALYFERMAPTITSVYDILGDTALYEVFKTIFSL-PDEISGMSVDSQAALLEDRMDMAD 906
Query: 191 LANPKK 196
LA+P+K
Sbjct: 907 LADPEK 912
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 86/416 (20%), Positives = 168/416 (40%), Gaps = 59/416 (14%)
Query: 78 LESDLSDPKSLVNQLNSLKYQYFARSYDF----SPPPKVIQSDIQHKTIIQDYKQSHQHK 133
L +D++ ++ +N + KY A +Y+F + P Q++ + + + Y S
Sbjct: 411 LNTDVAAARNYINATD--KYLALAYAYNFNDDGTVPAGGFQTEAELEATTELYVTSQDRL 468
Query: 134 E-EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSI-TPKYISLPFLKDVLT--- 188
A+ YFR+ I + +++ +D R++ Y+ +F++ T + L++ +T
Sbjct: 469 TLTGAMLNDDYFRETIGSFTTAEEMMEDERIVSYLKSAFNLDTYLTVVTSTLENAITSPA 528
Query: 189 --LGLANPKKYFIESRDNR-----FRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF 241
L + Y + + A++ F F+ DG+L + + + S YF
Sbjct: 529 TDADLEDETNYLVAFHKGKPYFDDLVALSRAFNFEEDGTLPDGLQPVDAENQSVLSSRYF 588
Query: 242 NNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLN---------PEIT 292
+ D + ++ I+ V ++ LF + F + P+
Sbjct: 589 SGYDDADEAADQEAIRRMQIDLVGLNTEGATVEDLFNSSAVYSFAMQAAELDPNEIPQRI 648
Query: 293 ADKFLT--LMQENDPIVS-----QVKYFFQINFHRDNSSST-----------KIQQDSQI 334
K LT L N + + VK+ NF + ++ I +D +
Sbjct: 649 MRKVLTSDLQDPNSYVYTLKDERYVKFANLFNFDSEGVATAPLTAQDQARMDDISRDYIV 708
Query: 335 QKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQ 394
QK L + D ++ YQ + I+++D LL G +L +
Sbjct: 709 QKTRFLTGEEAATARSDA-EAEASYYQRTVSNIETLDQLL-GNRRL------------ID 754
Query: 395 FALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSI 450
FAL A ++ + + D+L+ + S+ DPDSYAN D RL ++ +FNF+ G +
Sbjct: 755 FALTAKGIDPETVSNDELQLLFRSDLDDPDSYANTVSDFRLTEVVTSFNFDEAGKL 810
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 137/305 (44%), Gaps = 38/305 (12%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKS---LVN 90
Y+RE I +T +E ++D+R+ SY AF L + LE+ ++ P + L +
Sbjct: 479 YFRETIGSFTTAEEMMEDERIVSYLKSAFNLDTYL---TVVTSTLENAITSPATDADLED 535
Query: 91 QLNSL-----KYQYF------ARSYDF----SPPPKVIQSDIQHKTIIQD-YKQSHQHKE 134
+ N L YF +R+++F + P + D ++++++ Y + +
Sbjct: 536 ETNYLVAFHKGKPYFDDLVALSRAFNFEEDGTLPDGLQPVDAENQSVLSSRYFSGYDDAD 595
Query: 135 EVALEES-KYFRKNIHKIN----SVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTL 189
E A +E+ + + ++ +N +V+ LF + + +Q+ + P I ++ VLT
Sbjct: 596 EAADQEAIRRMQIDLVGLNTEGATVEDLFNSSAVYSFAMQAAELDPNEIPQRIMRKVLTS 655
Query: 190 GLANPKKYFIESRDNRFRAMAENFRFQPDGS----LSKRDKI-LTDMQIEKIVS-NYFNN 243
L +P Y +D R+ A F F +G L+ +D+ + D+ + IV F
Sbjct: 656 DLQDPNSYVYTLKDERYVKFANLFNFDSEGVATAPLTAQDQARMDDISRDYIVQKTRFLT 715
Query: 244 TIDCVPIVSD----QNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTL 299
+ SD +YY+ ++++ + L + +L L+ ++PE ++ L L
Sbjct: 716 GEEAATARSDAEAEASYYQRTVSNIETLDQLLGNRRLID-FALTAKGIDPETVSNDELQL 774
Query: 300 MQEND 304
+ +D
Sbjct: 775 LFRSD 779
>gi|90423974|ref|YP_532344.1| hypothetical protein RPC_2474 [Rhodopseudomonas palustris BisB18]
gi|90105988|gb|ABD88025.1| protein of unknown function DUF1217 [Rhodopseudomonas palustris
BisB18]
Length = 801
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 130/509 (25%), Positives = 233/509 (45%), Gaps = 57/509 (11%)
Query: 209 MAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS--DQNYYKLAINSVSS 266
+A F F PDG+L+ TD + + + P + ++ +++ I +
Sbjct: 279 LAGAFEFSPDGTLAAGVSAQTDASRKTTNERFITSQPRTSPSTALLEKQFFQQKIAGART 338
Query: 267 FSDFLKDP----------KLFKMLQLSLFPLNPEITADK--------FLTLMQENDPIVS 308
L P F + L L + +T+D+ + + D
Sbjct: 339 VDQLLAAPDAARVASFIGTAFGLGTLPLSTIKSILTSDRDPNNPNSYVNSAGSKKDAYTR 398
Query: 309 QVKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQS----LIKDYQL 362
+K F NF++D + + Q ++Q + Y + ++D ++ I+ ++
Sbjct: 399 LMKAF---NFNQDGTLDAGVDAQSETQTATTVGYY----MVAYNDADEASDKLAIQRFRN 451
Query: 363 PLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSD 422
+ I SI+ +S P + FAL + L+ + ++ L S+ S+
Sbjct: 452 GVYSITSIEKFVS------------TPAV-YNFALKSVGLDPDSVSAITVKAALESDLSN 498
Query: 423 PDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENK 482
P SY KD+R ++L +FNF++ G + + Q + + K Y K A +K
Sbjct: 499 PRSYVYTLKDERYVQLARSFNFDSKGHLTTPLVAQDTAEVGNIAKDYVIAKTKFATAADK 558
Query: 483 SFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVR 542
+ + QK N V+Y + I + S ELL++K+++NF+L +KG+D +KV
Sbjct: 559 A-------TLQKTAE---NDAVEYRS-KIAGVDSVAELLSDKKLVNFILVAKGLDPKKVT 607
Query: 543 EDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTC 602
D L +I SDL DPKSFANT D R+ E+ +SFNFD G+++ + Q+ + +T
Sbjct: 608 PDTLKKILSSDLSDPKSFANTASDTRFAELAASFNFDKTGKVARFVVAGPQNREQLLETQ 667
Query: 603 DLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAV 662
Y Q +E ++ +P + LALYF+R P+I + Y+IL D L +VV L A
Sbjct: 668 TKYLQQSLEAQQGGANPGVRLALYFQRKAPDITSAYDILADKALSEVVRTTYNLPDSMAN 727
Query: 663 LPERKKIRILKKHIKINDFKDSKKVEDFL 691
P ++ +I++K++K+ D D ++ L
Sbjct: 728 APIEQQAKIVEKYLKLKDLSDPAQLAKIL 756
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
V+K V+ E YY++ I + T+D+ +K+ RL+ YA+KA+GL DM+ A+ F++K+LESD
Sbjct: 22 VAKQTDVTREAAYYKDNIGKVKTVDDLLKNDRLYRYAMKAYGLEDMTFAKAFMRKVLESD 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFS-PPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
LSD KS N+L +Y+ FA ++ F+ QS Q ++ Y + Q + + E+
Sbjct: 82 LSDTKSFANKLTDKRYREFASAFSFTGGTTAAAQSSYQTDEMVGLYTATLQRQADAVGED 141
Query: 141 SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKY 197
++Y+ I + +VDQL D RL YV +F I + S L+ VL+ ++P Y
Sbjct: 142 TRYYNAKIGSVTTVDQLLNDDRLRGYVFSAFGIDEDHWSRDTLRKVLSSDSSDPNSY 198
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 106/203 (52%), Gaps = 14/203 (6%)
Query: 35 YRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNS 94
+R + I++I++F+ ++++ALK+ GL S + +K LESDLS+P+S V L
Sbjct: 449 FRNGVYSITSIEKFVSTPAVYNFALKSVGLDPDSVSAITVKAALESDLSNPRSYVYTLKD 508
Query: 95 LKYQYFARSYDFS-----PPPKVIQSDIQHKTIIQDY---------KQSHQHKEEVALEE 140
+Y ARS++F P V Q + I +DY ++ A +
Sbjct: 509 ERYVQLARSFNFDSKGHLTTPLVAQDTAEVGNIAKDYVIAKTKFATAADKATLQKTAEND 568
Query: 141 SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIE 200
+ +R I ++SV +L D++L++++L + + PK ++ LK +L+ L++PK +
Sbjct: 569 AVEYRSKIAGVDSVAELLSDKKLVNFILVAKGLDPKKVTPDTLKKILSSDLSDPKSFANT 628
Query: 201 SRDNRFRAMAENFRFQPDGSLSK 223
+ D RF +A +F F G +++
Sbjct: 629 ASDTRFAELAASFNFDKTGKVAR 651
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 10/148 (6%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ E YY NI + + ++LL N R+ + +++ G++ + F+ ++ +SDL D K
Sbjct: 27 DVTREAAYYKDNIGKVKTVDDLLKNDRLYRYAMKAYGLEDMTFAKAFMRKVLESDLSDTK 86
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
SFAN D RY+E S+F+F + Q ++ D+ LY + + + D
Sbjct: 87 SFANKLTDKRYREFASAFSF------TGGTTAAAQSSYQTDEMVGLYTATL----QRQAD 136
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKL 646
Y+ I ++ ++L D +L
Sbjct: 137 AVGEDTRYYNAKIGSVTTVDQLLNDDRL 164
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 37/203 (18%)
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
Y+ +GK+K++D+LL ++A+ AY L + +R VL S+
Sbjct: 35 YKDNIGKVKTVDDLLKNDR-------------LYRYAMKAYGLEDMTFAKAFMRKVLESD 81
Query: 420 PSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDA 479
SD S+ANK D R + AF+F G QS + V Y
Sbjct: 82 LSDTKSFANKLTDKRYREFASAFSFTG----GTTAAAQSSYQTDEMVGLY---------- 127
Query: 480 ENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQ 539
+T +R + + YY I ++ + ++LL + R+ ++ + GID
Sbjct: 128 ----------TATLQRQADAVGEDTRYYNAKIGSVTTVDQLLNDDRLRGYVFSAFGIDED 177
Query: 540 KVREDFLCEIFKSDLKDPKSFAN 562
D L ++ SD DP S+ N
Sbjct: 178 HWSRDTLRKVLSSDSSDPNSYVN 200
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/405 (20%), Positives = 172/405 (42%), Gaps = 41/405 (10%)
Query: 78 LESDLSDPKSLVNQLNSLKYQY-FARSYDFSPPPKVI-----QSDIQHKTIIQDYKQSH- 130
L +D S + ++ + + A +++FSP + Q+D KT + + S
Sbjct: 256 LGKTAADISSYTGSITAISHYFDLAGAFEFSPDGTLAAGVSAQTDASRKTTNERFITSQP 315
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKD---RRLLDYVLQSFSITPKYISLPFLKDVL 187
+ AL E ++F++ I +VDQL R+ ++ +F + + L +K +L
Sbjct: 316 RTSPSTALLEKQFFQQKIAGARTVDQLLAAPDAARVASFIGTAFGLGT--LPLSTIKSIL 373
Query: 188 TLGL--ANPKKYF--IESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY--- 240
T NP Y S+ + + + + F F DG+L ++ Q V Y
Sbjct: 374 TSDRDPNNPNSYVNSAGSKKDAYTRLMKAFNFNQDGTLDAGVDAQSETQTATTVGYYMVA 433
Query: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM 300
+N+ + ++ Q + + + S++S F+ P ++ L L+P+ + +
Sbjct: 434 YNDADEASDKLAIQRF-RNGVYSITSIEKFVSTPAVYN-FALKSVGLDPDSVSAITVKAA 491
Query: 301 QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY 360
E+D + + Y + + R + DS+ L ++ ++ ++ KDY
Sbjct: 492 LESD-LSNPRSYVYTLKDERYVQLARSFNFDSKGHLTTPLVAQDTA-----EVGNIAKDY 545
Query: 361 QLPLGKIKSI-----------DNLLSGKCQLEGPNSAEEPII---TLQFALDAYNLNMQD 406
+ K + ++ + + ++ G +S E + + F L A L+ +
Sbjct: 546 VIAKTKFATAADKATLQKTAENDAVEYRSKIAGVDSVAELLSDKKLVNFILVAKGLDPKK 605
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIG 451
+ D L+ +L+S+ SDP S+AN + D R +L +FNF+ G +
Sbjct: 606 VTPDTLKKILSSDLSDPKSFANTASDTRFAELAASFNFDKTGKVA 650
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 5/167 (2%)
Query: 112 VIQSDIQHKTIIQDYKQS--HQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
++ + + + + ++ KQS K+ E+ Y++ NI K+ +VD L K+ RL Y ++
Sbjct: 1 MVSTYLSYDLVARNLKQSLTRVAKQTDVTREAAYYKDNIGKVKTVDDLLKNDRLYRYAMK 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
++ + + F++ VL L++ K + + D R+R A F F + + + T
Sbjct: 61 AYGLEDMTFAKAFMRKVLESDLSDTKSFANKLTDKRYREFASAFSFTGGTTAAAQSSYQT 120
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKL 276
D ++ + + D V D YY I SV++ L D +L
Sbjct: 121 D-EMVGLYTATLQRQADAVG--EDTRYYNAKIGSVTTVDQLLNDDRL 164
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 11/159 (6%)
Query: 35 YRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNS 94
YR +I + ++ E + DK+L ++ L A GL +KKIL SDLSDPKS N +
Sbjct: 572 YRSKIAGVDSVAELLSDKKLVNFILVAKGLDPKKVTPDTLKKILSSDLSDPKSFANTASD 631
Query: 95 LKYQYFARSYDFSPPPKV---IQSDIQHKT--------IIQDYKQSHQHKEEVALEESKY 143
++ A S++F KV + + Q++ +Q ++ Q + + Y
Sbjct: 632 TRFAELAASFNFDKTGKVARFVVAGPQNREQLLETQTKYLQQSLEAQQGGANPGVRLALY 691
Query: 144 FRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPF 182
F++ I S + D+ L + V ++++ + P
Sbjct: 692 FQRKAPDITSAYDILADKALSEVVRTTYNLPDSMANAPI 730
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 28 VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKS 87
V + RYY +I ++T+D+ + D RL Y AFG+ + + ++K+L SD SDP S
Sbjct: 138 VGEDTRYYNAKIGSVTTVDQLLNDDRLRGYVFSAFGIDEDHWSRDTLRKVLSSDSSDPNS 197
Query: 88 LVNQL 92
VN +
Sbjct: 198 YVNAV 202
>gi|218459363|ref|ZP_03499454.1| hypothetical protein RetlK5_07677 [Rhizobium etli Kim 5]
Length = 332
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 156/302 (51%), Gaps = 10/302 (3%)
Query: 396 ALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPM 455
AL A+ L QD+ R +R +LTS+ DPD Y KD+R+ L AFNF DG
Sbjct: 21 ALQAFGLTDQDVPRSMMRKILTSDAYDPDGYIASLKDERITNLARAFNFGPDGKAASPFQ 80
Query: 456 MQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIH 515
T+ Y + ++ + + + + +EVDY+ + +
Sbjct: 81 ALPDATLAKYATDYKAHMTML----------LKAGPVKDKASKDATAEVDYFAKGMAKVK 130
Query: 516 SFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISS 575
S ++ L + R+ + +L++ +D + + L +IF SD D KS+ N+ D R+++I+++
Sbjct: 131 SLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLNSKADARFQDIVAA 190
Query: 576 FNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIR 635
FNFD G L+ KIG +Q+ ++T +LY Q +E ++ E + + LALYF R P+I
Sbjct: 191 FNFDKDGNLTRAKIGTIQNKAAEENTQELYVRQTLEAQQGETNDGVRLALYFSRKAPSIT 250
Query: 636 NHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAK 695
+ Y ILGD L++V++ L + + K+ ++ + +K+ D +D KKV+ L
Sbjct: 251 SIYSILGDKALYQVITTAYSLPAQISSMDVTKQADLINRFVKLEDLQDPKKVDKLLRRFT 310
Query: 696 AM 697
AM
Sbjct: 311 AM 312
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 16/190 (8%)
Query: 55 FSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQ 114
+ AL+AFGL+D ++KIL SD DP + L + AR+++F P K
Sbjct: 18 YHVALQAFGLTDQDVPRSMMRKILTSDAYDPDGYIASLKDERITNLARAFNFGPDGKAAS 77
Query: 115 S-----DIQHKTIIQDYK-------QSHQHKEEV---ALEESKYFRKNIHKINSVDQLFK 159
D DYK ++ K++ A E YF K + K+ S+D
Sbjct: 78 PFQALPDATLAKYATDYKAHMTMLLKAGPVKDKASKDATAEVDYFAKGMAKVKSLDDFLD 137
Query: 160 DRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDG 219
D RL D VL++ ++ PK LK + T + K Y D RF+ + F F DG
Sbjct: 138 DSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLNSKADARFQDIVAAFNFDKDG 197
Query: 220 SLSKRDKILT 229
+L+ R KI T
Sbjct: 198 NLT-RAKIGT 206
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
SKD + E Y+ + + + ++D+F+ D RL LKA L + + +KKI SD
Sbjct: 111 ASKD--ATAEVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSD 168
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS---DIQHKTI--------IQDYKQSH 130
D KS +N ++Q +++F + ++ IQ+K ++ ++
Sbjct: 169 PDDKKSYLNSKADARFQDIVAAFNFDKDGNLTRAKIGTIQNKAAEENTQELYVRQTLEAQ 228
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLG 190
Q + + + YF + I S+ + D+ L + ++S+ + S+ K +
Sbjct: 229 QGETNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVTKQADLIN 288
Query: 191 -------LANPKKYFIESRDNRFRAM 209
L +PKK ++ RF AM
Sbjct: 289 RFVKLEDLQDPKK--VDKLLRRFTAM 312
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 38/204 (18%)
Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDP 423
+ K+KS+D+ L ++ +T L A NL+ +D D+ L+ + TS+P D
Sbjct: 126 MAKVKSLDDFL------------DDSRLT-DLVLKANNLDPKDYDKATLKKIFTSDPDDK 172
Query: 424 DSYANKSKDDRLIKLNHAFNFNADGSI--GPIPMMQSRLTIRDNVKHYANRKRSIHDAEN 481
SY N D R + AFNF+ DG++ I +Q++ + + Y + E
Sbjct: 173 KSYLNSKADARFQDIVAAFNFDKDGNLTRAKIGTIQNKAAEENTQELYVRQTLEAQQGE- 231
Query: 482 KSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQ-- 539
T + L + Y++ +I S +L +K + + + + +Q
Sbjct: 232 ----------TNDGVRLAL-----YFSRKAPSITSIYSILGDKALYQVITTAYSLPAQIS 276
Query: 540 ----KVREDFLCEIFK-SDLKDPK 558
+ D + K DL+DPK
Sbjct: 277 SMDVTKQADLINRFVKLEDLQDPK 300
>gi|218680748|ref|ZP_03528645.1| hypothetical protein RetlC8_18559 [Rhizobium etli CIAT 894]
Length = 262
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 143/241 (59%), Gaps = 4/241 (1%)
Query: 1 MIPSHVAPFP-SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ ++V+ ++++ + L S V+ VS + YY+E I ++T+DEF+ D +L+SYA+
Sbjct: 1 MVSTYVSYLAVARNLNTSL-SNVASQATVSRDSAYYKENIDKVTTVDEFMGDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ FS K QSD+Q
Sbjct: 60 KAYGLDDMTYAKAFMKKVLESDLSDSSSFANSLSDSRYAEFAAAFKFSGETKTAQSDVQR 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
++ Y+ S + E +E+ YF +NI I SVD RL +Y L +F ++ +Y S
Sbjct: 120 DNLLDAYETSFDTEAENIADETDYFEENISSITSVDDFLSSSRLKNYALTAFGLSTEYTS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FLK VLT L +P + + D+ + ++A+ F F DGS ++++ QI + S
Sbjct: 180 SSFLKQVLTSDLDDPDSFVNQLGDDVYVSLAKAFNFNEDGSTDG--DVMSEDQISLVTSG 237
Query: 240 Y 240
Y
Sbjct: 238 Y 238
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 30/209 (14%)
Query: 395 FALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIP 454
+A+ AY L+ + ++ VL S+ SD S+AN D R + AF F+ G
Sbjct: 57 YAMKAYGLDDMTYAKAFMKKVLESDLSDSSSFANSLSDSRYAEFAAAFKFS-----GETK 111
Query: 455 MMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTI 514
QS + RDN + DA SF++ + I E DY+ NI++I
Sbjct: 112 TAQSDVQ-RDN----------LLDAYETSFDTEAE---------NIADETDYFEENISSI 151
Query: 515 HSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIIS 574
S ++ L++ R+ N+ L + G+ ++ FL ++ SDL DP SF N D+ Y +
Sbjct: 152 TSVDDFLSSSRLKNYALTAFGLSTEYTSSSFLKQVLTSDLDDPDSFVNQLGDDVYVSLAK 211
Query: 575 SFNFDIHGE-----LSHKKIGKVQDNFHI 598
+FNF+ G +S +I V + +
Sbjct: 212 AFNFNEDGSTDGDVMSEDQISLVTSGYAV 240
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 31/244 (12%)
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPE 290
+ + + ++ +N + D YYK I+ V++ +F+ D KL+ + + L+
Sbjct: 9 LAVARNLNTSLSNVASQATVSRDSAYYKENIDKVTTVDEFMGDYKLYS-YAMKAYGLDDM 67
Query: 291 ITADKFLTLMQENDPI--------VSQVKYF-FQINFHRDNSSSTKIQQDSQIQKMLDLY 341
A F+ + E+D +S +Y F F + T Q D Q +LD Y
Sbjct: 68 TYAKAFMKKVLESDLSDSSSFANSLSDSRYAEFAAAFKFSGETKTA-QSDVQRDNLLDAY 126
Query: 342 KKNCQILHDDKMQSLIKD---YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
+ + D + +++ + ++ + I S+D+ LS +L+ +AL
Sbjct: 127 ETS----FDTEAENIADETDYFEENISSITSVDDFLS-SSRLK------------NYALT 169
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
A+ L+ + L+ VLTS+ DPDS+ N+ DD + L AFNFN DGS M +
Sbjct: 170 AFGLSTEYTSSSFLKQVLTSDLDDPDSFVNQLGDDVYVSLAKAFNFNEDGSTDGDVMSED 229
Query: 459 RLTI 462
++++
Sbjct: 230 QISL 233
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 506 YYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYK 565
YY NI+ + + +E + + ++ ++ +++ G+D + F+ ++ +SDL D SFAN+
Sbjct: 34 YYKENIDKVTTVDEFMGDYKLYSYAMKAYGLDDMTYAKAFMKKVLESDLSDSSSFANSLS 93
Query: 566 DNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALAL 625
D+RY E ++F F GE Q + D+ D Y+ + E D
Sbjct: 94 DSRYAEFAAAFKF--SGETK-----TAQSDVQRDNLLDAYETSFDTEAENIADETD---- 142
Query: 626 YFKRTIPNIRNHYEILGDSKL 646
YF+ I +I + + L S+L
Sbjct: 143 YFEENISSITSVDDFLSSSRL 163
>gi|260466626|ref|ZP_05812814.1| protein of unknown function DUF1217 [Mesorhizobium opportunistum
WSM2075]
gi|259029632|gb|EEW30920.1| protein of unknown function DUF1217 [Mesorhizobium opportunistum
WSM2075]
Length = 373
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 25/299 (8%)
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGP 452
++A+ AY L D + + L +DPDS+ANK D R + AFNF A+G+
Sbjct: 55 FKYAMKAYGLEDMDYAKAFMVKALKEGVTDPDSFANKLTDKRYAQFVSAFNFAANGADAT 114
Query: 453 IPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNIN 512
I +L + K+YA + + N + + E YY NI
Sbjct: 115 IYNKAQQLVM----KNYATQAQIAGLDPNSDY---------------VKGETTYYLANIT 155
Query: 513 TIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEI 572
+ S ++L++N R+ + L + G+DS +D + ++ +S + DP S AN + Y +
Sbjct: 156 KVKSVDDLMSNSRLYTYALAAYGLDSATEDKDLIKQVLQSKVSDPDSVANKQTNPAYAGL 215
Query: 573 ISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIP 632
+FNF+ +GE + I Q T D Y Q +E+ + + + LALYF+R P
Sbjct: 216 ALAFNFEANGE-NATTISPAQ-----QPTVDKYLRQTLEEDAGQTNQGVRLALYFQRKAP 269
Query: 633 NIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFL 691
+I + Y++L D+ L VV L L FA K+ ++ ++ + + DF D K+ FL
Sbjct: 270 DITSWYDVLADTALASVVRTALGLPDSFATANIDKQAQLFEQKLDLTDFTDPAKLTKFL 328
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 138/286 (48%), Gaps = 18/286 (6%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
++DI SK + K P V + +YY I + +ID+F+K+ RLF YA+KA+GL DM +A
Sbjct: 12 TRDI-SKSIDRIEKQPTVDRDTQYYLANITKVKSIDDFVKNDRLFKYAMKAYGLEDMDYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP--PPKVIQSDIQHKTIIQDYKQ 128
+ F+ K L+ ++DP S N+L +Y F +++F+ I + Q ++++Y
Sbjct: 71 KAFMVKALKEGVTDPDSFANKLTDKRYAQFVSAFNFAANGADATIYNKAQQ-LVMKNYAT 129
Query: 129 SHQ-----HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFL 183
Q + E+ Y+ NI K+ SVD L + RL Y L ++ + +
Sbjct: 130 QAQIAGLDPNSDYVKGETTYYLANITKVKSVDDLMSNSRLYTYALAAYGLDSATEDKDLI 189
Query: 184 KDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNN 243
K VL +++P + + + +A F F+ +G + ++ Q + V Y
Sbjct: 190 KQVLQSKVSDPDSVANKQTNPAYAGLALAFNFEANG---ENATTISPAQ-QPTVDKYLRQ 245
Query: 244 TIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
T++ ++Q Y++ ++S+ D L D L +++ +L
Sbjct: 246 TLEEDAGQTNQGVRLALYFQRKAPDITSWYDVLADTALASVVRTAL 291
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
++ + YY NI + S ++ + N R+ + +++ G++ + F+ + K + DP S
Sbjct: 28 VDRDTQYYLANITKVKSIDDFVKNDRLFKYAMKAYGLEDMDYAKAFMVKALKEGVTDPDS 87
Query: 560 FANTYKDNRYKEIISSFNFDIHG 582
FAN D RY + +S+FNF +G
Sbjct: 88 FANKLTDKRYAQFVSAFNFAANG 110
>gi|12214188|emb|CAC21603.1| unnamed protein product [Sinorhizobium meliloti]
Length = 315
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
S+E++S Q ++ E +YY I +I + ++ A+ R+ N+ +++ G++ + F
Sbjct: 74 SLERVSAQP----DVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKAHGLEDMAYAKAF 129
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ + +FAN D RYK ++ S NF HGE + + Q + Y
Sbjct: 130 MRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGE-AATAFERAQKG-----VAEKY 183
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
Q +E+K E++ + LALYF+R P I N YEI+ D L VV L+L FA
Sbjct: 184 TRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSHVVRTVLQLPAEFAAADV 243
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFL 691
++ + I DF+D +K+ +FL
Sbjct: 244 DRQAEAYEAAIDFKDFQDPQKIAEFL 269
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
+K VS P V+ E YY +I I T+D+F D RL++YA+KA GL DM++A+ F++
Sbjct: 72 TKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKAHGLEDMAYAKAFMR 131
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS-DIQHKTIIQDYKQSHQHKE 134
K+L + + N+L +Y+ S +F+ + + + K + + Y + Q E
Sbjct: 132 KVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFERAQKGVAEKY--TRQTLE 189
Query: 135 EVALEESKYFRKNIH 149
+ A EE+ R ++
Sbjct: 190 QKAGEENTGVRLALY 204
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 110 PKVIQSDIQHKTIIQDYKQSHQH---KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDY 166
P V + ++ I D +S + + +VA E++Y+ I I ++D F D RL +Y
Sbjct: 55 PIVTTTYTSYRLITADLTKSLERVSAQPDVA-RETEYYLSKIGSIKTLDDFFADSRLYNY 113
Query: 167 VLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLS 222
+++ + + F++ VL G+ + + + D R++A+ E+ F G +
Sbjct: 114 AMKAHGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAA 169
>gi|115523169|ref|YP_780080.1| hypothetical protein RPE_1148 [Rhodopseudomonas palustris BisA53]
gi|115517116|gb|ABJ05100.1| protein of unknown function DUF1217 [Rhodopseudomonas palustris
BisA53]
Length = 257
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 6/193 (3%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
+++ E YY +I+ + S E+ + + R+ ++ +++ G+ + FL ++ + DP
Sbjct: 27 DVSHETTYYLAHIHNVTSVEQFVGDFRLFSYAMKAYGLADMTYAKAFLRKVLTEGVADPS 86
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
SFAN D RY+E ++FNF GE + + T + Y Q +E+ E D
Sbjct: 87 SFANKLVDTRYREFAAAFNFASLGEQATRTTAAT------SGTVERYVRQSLEQDAGETD 140
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKI 678
+ LALYF+R P ++ Y+IL D L +V L +SP ++ ++ +L K I
Sbjct: 141 QGVQLALYFERKAPTLKTAYQILADKALLQVAQTTLGISPLTSMASIDRQAAMLAKKIDF 200
Query: 679 NDFKDSKKVEDFL 691
+DF+ K+ FL
Sbjct: 201 SDFQHPTKLRAFL 213
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 99/172 (57%), Gaps = 6/172 (3%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
F ++++ L T SK P VS E YY I +++++++F+ D RLFSYA+KA+GL+DM+
Sbjct: 10 FITQNLARSLAQTASK-PDVSHETTYYLAHIHNVTSVEQFVGDFRLFSYAMKAYGLADMT 68
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQHKTIIQDY- 126
+A+ F++K+L ++DP S N+L +Y+ FA +++F S + ++ ++ Y
Sbjct: 69 YAKAFLRKVLTEGVADPSSFANKLVDTRYREFAAAFNFASLGEQATRTTAATSGTVERYV 128
Query: 127 KQSHQH---KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+QS + + + ++ + YF + + + Q+ D+ LL + I+P
Sbjct: 129 RQSLEQDAGETDQGVQLALYFERKAPTLKTAYQILADKALLQVAQTTLGISP 180
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
E+ Y+ +IH + SV+Q D RL Y ++++ + + FL+ VLT G+A+P +
Sbjct: 31 ETTYYLAHIHNVTSVEQFVGDFRLFSYAMKAYGLADMTYAKAFLRKVLTEGVADPSSFAN 90
Query: 200 ESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN---- 255
+ D R+R A F F G + R T +E+ Y +++ +DQ
Sbjct: 91 KLVDTRYREFAAAFNFASLGEQATRTTAATSGTVER----YVRQSLEQDAGETDQGVQLA 146
Query: 256 -YYKLAINSVSSFSDFLKDPKLFKMLQ--LSLFPLNPEITADK 295
Y++ ++ + L D L ++ Q L + PL + D+
Sbjct: 147 LYFERKAPTLKTAYQILADKALLQVAQTTLGISPLTSMASIDR 189
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 395 FALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADG 448
+A+ AY L + LR VLT +DP S+ANK D R + AFNF + G
Sbjct: 57 YAMKAYGLADMTYAKAFLRKVLTEGVADPSSFANKLVDTRYREFAAAFNFASLG 110
>gi|15964408|ref|NP_384761.1| hypothetical protein SMc03023 [Sinorhizobium meliloti 1021]
gi|307318905|ref|ZP_07598336.1| protein of unknown function DUF1217 [Sinorhizobium meliloti AK83]
gi|15073585|emb|CAC45227.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306895319|gb|EFN26074.1| protein of unknown function DUF1217 [Sinorhizobium meliloti AK83]
Length = 259
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
S+E++S Q ++ E +YY I +I + ++ A+ R+ N+ +++ G++ + F
Sbjct: 18 SLERVSAQP----DVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKAHGLEDMAYAKAF 73
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ + +FAN D RYK ++ S NF HGE + + Q + Y
Sbjct: 74 MRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGE-AATAFERAQKG-----VAEKY 127
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
Q +E+K E++ + LALYF+R P I N YEI+ D L VV L+L FA
Sbjct: 128 TRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSSVVRTVLQLPAEFAAADV 187
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFL 691
++ + I DF+D +K+ +FL
Sbjct: 188 DRQADAYEAAIDFKDFQDPQKIAEFL 213
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
+K VS P V+ E YY +I I T+D+F D RL++YA+KA GL DM++A+ F++
Sbjct: 16 TKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKAHGLEDMAYAKAFMR 75
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS-DIQHKTIIQDYKQSHQHKE 134
K+L + + N+L +Y+ S +F+ + + + K + + Y + Q E
Sbjct: 76 KVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFERAQKGVAEKY--TRQTLE 133
Query: 135 EVALEESKYFRKNIH 149
+ A EE+ R ++
Sbjct: 134 QKAGEENTGVRLALY 148
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
E++Y+ I I ++D F D RL +Y +++ + + F++ VL G+ + +
Sbjct: 31 ETEYYLSKIGSIKTLDDFFADSRLYNYAMKAHGLEDMAYAKAFMRKVLAEGIDSDDAFAN 90
Query: 200 ESRDNRFRAMAENFRFQPDG 219
+ D R++A+ E+ F G
Sbjct: 91 KLADGRYKALVESLNFARHG 110
>gi|307311550|ref|ZP_07591191.1| protein of unknown function DUF1217 [Sinorhizobium meliloti BL225C]
gi|306899567|gb|EFN30196.1| protein of unknown function DUF1217 [Sinorhizobium meliloti BL225C]
Length = 259
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
S+E++S Q ++ E +YY I +I + ++ A+ R+ N+ +++ G++ + F
Sbjct: 18 SLERVSAQP----DVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKAHGLEDMAYAKAF 73
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ + +FAN D RYK ++ S NF HGE + + Q + Y
Sbjct: 74 MRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGE-AATAFERAQKG-----VAEKY 127
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
Q +E+K E++ + LALYF+R P I N YEI+ D L VV L+L FA
Sbjct: 128 TRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSSVVRTVLQLPAEFAAADV 187
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFL 691
++ + I DF+D +K+ +FL
Sbjct: 188 DRQADAYEAAIDFKDFQDPQKIAEFL 213
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
+K VS P V+ E YY +I I T+D+F D RL++YA+KA GL DM++A+ F++
Sbjct: 16 TKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKAHGLEDMAYAKAFMR 75
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS-DIQHKTIIQDYKQSHQHKE 134
K+L + + N+L +Y+ S +F+ + + + K + + Y + Q E
Sbjct: 76 KVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFERAQKGVAEKY--TRQTLE 133
Query: 135 EVALEESKYFRKNIH 149
+ A EE+ R ++
Sbjct: 134 QKAGEENTGVRLALY 148
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
E++Y+ I I ++D F D RL +Y +++ + + F++ VL G+ + +
Sbjct: 31 ETEYYLSKIGSIKTLDDFFADSRLYNYAMKAHGLEDMAYAKAFMRKVLAEGIDSDDAFAN 90
Query: 200 ESRDNRFRAMAENFRFQPDG 219
+ D R++A+ E+ F G
Sbjct: 91 KLADGRYKALVESLNFARHG 110
>gi|218661874|ref|ZP_03517804.1| hypothetical protein RetlI_21473 [Rhizobium etli IE4771]
Length = 133
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 89/130 (68%), Gaps = 2/130 (1%)
Query: 1 MIPSHVA-PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
MI + +A SKD+ S L + V+ V + +YY + I ++++D+F+ D +L+SYA+
Sbjct: 1 MITASLAYSILSKDMTSSL-NKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 60 KAYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDARYREFAAAFNFNAPEKDVQTDAQE 119
Query: 120 KTIIQDYKQS 129
+I YKQS
Sbjct: 120 DELIGLYKQS 129
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 68/127 (53%), Gaps = 11/127 (8%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+S+ ++++Q + + YY +IN + S ++ L + ++ ++ +++ G++ +
Sbjct: 17 SSLNKVASQATVK----KDAQYYADHINKVTSVDDFLGDYKLYSYAMKAYGLEDMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ +SDL DP S+AN D RY+E ++FNF+ + VQ + D+ L
Sbjct: 73 FMKKVLESDLTDPNSYANKLSDARYREFAAAFNFNAPEK-------DVQTDAQEDELIGL 125
Query: 605 YKHQMIE 611
YK ++
Sbjct: 126 YKQSFVD 132
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 139 EESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYF 198
++++Y+ +I+K+ SVD D +L Y ++++ + + F+K VL L +P Y
Sbjct: 30 KDAQYYADHINKVTSVDDFLGDYKLYSYAMKAYGLEDMTYAKAFMKKVLESDLTDPNSYA 89
Query: 199 IESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDC 247
+ D R+R A F F + + TD Q ++++ Y + +D
Sbjct: 90 NKLSDARYREFAAAFNFN-----APEKDVQTDAQEDELIGLYKQSFVDA 133
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDP 423
+ K+ S+D+ L G +L +A+ AY L + ++ VL S+ +DP
Sbjct: 39 INKVTSVDDFL-GDYKL------------YSYAMKAYGLEDMTYAKAFMKKVLESDLTDP 85
Query: 424 DSYANKSKDDRLIKLNHAFNFNA 446
+SYANK D R + AFNFNA
Sbjct: 86 NSYANKLSDARYREFAAAFNFNA 108
>gi|150395478|ref|YP_001325945.1| hypothetical protein Smed_0251 [Sinorhizobium medicae WSM419]
gi|150026993|gb|ABR59110.1| protein of unknown function DUF1217 [Sinorhizobium medicae WSM419]
Length = 259
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
S+E++S Q ++ E +YY I +I + +E A+ R+ ++ +++ G++ + F
Sbjct: 18 SLERVSEQP----DVARETEYYLSKIGSIKTLDEFFADSRLYDYAMKAHGLEDMAYAKAF 73
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ + +FAN D RYK ++ S NF HGE + + Q + Y
Sbjct: 74 MRKVLGEGIDSDDAFANKLADGRYKSLVESLNFARHGE-AATSFERAQKG-----VAEKY 127
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
Q +E+K E++ + LALYF+R P I N YEI+ D L VV L+L FA
Sbjct: 128 TRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSHVVRTVLQLPEEFAATDV 187
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFL 691
++ + + + DF+D KV +FL
Sbjct: 188 DRQAAAYESAVDLKDFQDPHKVAEFL 213
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
+K VS+ P V+ E YY +I I T+DEF D RL+ YA+KA GL DM++A+ F++
Sbjct: 16 TKSLERVSEQPDVARETEYYLSKIGSIKTLDEFFADSRLYDYAMKAHGLEDMAYAKAFMR 75
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS-DIQHKTIIQDYKQSHQHKE 134
K+L + + N+L +Y+ S +F+ + S + K + + Y + Q E
Sbjct: 76 KVLGEGIDSDDAFANKLADGRYKSLVESLNFARHGEAATSFERAQKGVAEKY--TRQTLE 133
Query: 135 EVALEESKYFRKNIH 149
+ A EE+ R ++
Sbjct: 134 QKAGEENTGVRLALY 148
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 119 HKTIIQDYKQSHQHKEE---VALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+K I D +S + E VA E++Y+ I I ++D+ F D RL DY +++ +
Sbjct: 8 YKLITADLTKSLERVSEQPDVA-RETEYYLSKIGSIKTLDEFFADSRLYDYAMKAHGLED 66
Query: 176 KYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDG 219
+ F++ VL G+ + + + D R++++ E+ F G
Sbjct: 67 MAYAKAFMRKVLGEGIDSDDAFANKLADGRYKSLVESLNFARHG 110
>gi|323139683|ref|ZP_08074724.1| protein of unknown function DUF1217 [Methylocystis sp. ATCC 49242]
gi|322395062|gb|EFX97622.1| protein of unknown function DUF1217 [Methylocystis sp. ATCC 49242]
Length = 266
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 93/162 (57%), Gaps = 6/162 (3%)
Query: 20 STVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILE 79
S +K P V+ E +Y++E I ++I+ F+KD+RLF+YA+KAFGL D + A ++K++E
Sbjct: 19 SITAKAPDVALETKYFKENIGKATSIEAFLKDRRLFNYAMKAFGLGDRTFAIGLMRKVME 78
Query: 80 SDLSDPKSLVNQLNSLKYQYFARSYDFSP-----PPKVIQSDIQHKTIIQDYKQSHQHKE 134
+ DPK+L LN+ FA+++DFS P + D+ + ++ Q+ Q K
Sbjct: 79 QGVDDPKALARTLNNPNILAFAKAFDFSAKGAGVPSATLIQDVTAR-FVEQAMQAEQGKR 137
Query: 135 EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
+E + YFR+ + S+ + D++L+ V + I+P+
Sbjct: 138 NPGVELALYFREKAPGLTSIYGVLADKKLVQVVQTALDISPR 179
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 7/199 (3%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ E Y+ NI S E L ++R+ N+ +++ G+ + + ++ + + DPK
Sbjct: 26 DVALETKYFKENIGKATSIEAFLKDRRLFNYAMKAFGLGDRTFAIGLMRKVMEQGVDDPK 85
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ A T + +F+F G V I D + Q ++ ++ +++
Sbjct: 86 ALARTLNNPNILAFAKAFDFSAKGA-------GVPSATLIQDVTARFVEQAMQAEQGKRN 138
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKI 678
P + LALYF+ P + + Y +L D KL +VV L +SP + + R+LK + +
Sbjct: 139 PGVELALYFREKAPGLTSIYGVLADKKLVQVVQTALDISPRTSAQNIDTQARLLKAKVNV 198
Query: 679 NDFKDSKKVEDFLYAAKAM 697
DFKD KK+ F+ AM
Sbjct: 199 EDFKDPKKLTAFIARFSAM 217
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 126 YKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKD 185
++ +VALE +KYF++NI K S++ KDRRL +Y +++F + + ++ ++
Sbjct: 17 WRSITAKAPDVALE-TKYFKENIGKATSIEAFLKDRRLFNYAMKAFGLGDRTFAIGLMRK 75
Query: 186 VLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI 245
V+ G+ +PK + A A+ F F G+ + + I+ + + + +
Sbjct: 76 VMEQGVDDPKALARTLNNPNILAFAKAFDFSAKGA-----GVPSATLIQDVTARFVEQAM 130
Query: 246 DCV-----PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITA 293
P V Y++ ++S L D KL +++Q +L ++P +A
Sbjct: 131 QAEQGKRNPGVELALYFREKAPGLTSIYGVLADKKLVQVVQTAL-DISPRTSA 182
>gi|161620213|ref|YP_001594099.1| hypothetical protein BCAN_B0131 [Brucella canis ATCC 23365]
gi|254702555|ref|ZP_05164383.1| hypothetical protein Bsuib36_01112 [Brucella suis bv. 3 str. 686]
gi|261753133|ref|ZP_05996842.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|161337024|gb|ABX63328.1| protein of unknown function DUF1217 [Brucella canis ATCC 23365]
gi|261742886|gb|EEY30812.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
Length = 262
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL DM++A+ F++KIL
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEG 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
++D ++ N+L +Y+ FA +DF+ + QS + +I Y + KE + E
Sbjct: 82 VTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVRQTLEKEAGSQNE 141
Query: 141 ----SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
+ YF + + + ++ D+ LL V +F
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFG 177
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F+ +I + D +
Sbjct: 28 VERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEGVTDEDA 87
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +EK+ ++
Sbjct: 88 MANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ------GVIDKYVRQTLEKEAGSQNE 141
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVV 650
+ LALYF+R P++ N YEILGD L +V
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMV 172
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 112 VIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
++ + ++ I + +S Q KE + E+ Y+++NI + SVD D RL +Y ++
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+F + + F++ +LT G+ + + D R++ A F F G+ + + T
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQS---T 117
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Q + ++ Y T++ ++ Y++ S+++ + L D L M+Q +
Sbjct: 118 AAQ-QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTF 176
Query: 285 FPLNPEITAD 294
L+ AD
Sbjct: 177 GWLSTMSNAD 186
>gi|23499890|ref|NP_699330.1| hypothetical protein BRA0127 [Brucella suis 1330]
gi|23463465|gb|AAN33335.1| conserved hypothetical protein [Brucella suis 1330]
Length = 258
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL DM++A+ F++KIL
Sbjct: 18 VSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEG 77
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
++D ++ N+L +Y+ FA +DF+ + QS + +I Y + KE + E
Sbjct: 78 VTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVRQTLEKEAGSQNE 137
Query: 141 ----SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
+ YF + + + ++ D+ LL V +F
Sbjct: 138 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFG 173
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F+ +I + D +
Sbjct: 24 VERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEGVTDEDA 83
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +EK+ ++
Sbjct: 84 MANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ------GVIDKYVRQTLEKEAGSQNE 137
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVV 650
+ LALYF+R P++ N YEILGD L +V
Sbjct: 138 GVRLALYFERKAPSLTNAYEILGDKALLTMV 168
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 11/183 (6%)
Query: 119 HKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ I + +S Q KE + E+ Y+++NI + SVD D RL +Y +++F +
Sbjct: 4 YRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDM 63
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKI 236
+ F++ +LT G+ + + D R++ A F F G+ + + T Q + +
Sbjct: 64 AYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQS---TAAQ-QGV 119
Query: 237 VSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEI 291
+ Y T++ ++ Y++ S+++ + L D L M+Q + L+
Sbjct: 120 IDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMS 179
Query: 292 TAD 294
AD
Sbjct: 180 NAD 182
>gi|254711992|ref|ZP_05173803.1| hypothetical protein BcetM6_01082 [Brucella ceti M644/93/1]
gi|254715062|ref|ZP_05176873.1| hypothetical protein BcetM_01092 [Brucella ceti M13/05/1]
gi|261216769|ref|ZP_05931050.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261319636|ref|ZP_05958833.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|260921858|gb|EEX88426.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292326|gb|EEX95822.1| conserved hypothetical protein [Brucella ceti M644/93/1]
Length = 262
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL DM++A+ F++KIL
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEG 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
++D ++ N+L +Y+ FA +DF+ + QS + +I Y + KE + E
Sbjct: 82 VTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVRQTLEKEAGSQNE 141
Query: 141 ----SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
+ YF + + + ++ D+ LL V +F
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFG 177
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F+ +I + D +
Sbjct: 28 VERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEGVTDEDA 87
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +EK+ ++
Sbjct: 88 MANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ------GVIDKYVRQTLEKEAGSQNE 141
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ LALYF+R P++ N YEILGD L +V + K+ +++ I +
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNADIDKQAKMIADKIDFS 201
Query: 680 DFKDSKKVEDFLYAAKAM 697
D V F+ AM
Sbjct: 202 KMSDPDYVSKFISRITAM 219
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 112 VIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
++ + ++ I + +S Q KE + E+ Y+++NI + SVD D RL +Y ++
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+F + + F++ +LT G+ + + D R++ A F F G+ + + T
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQS---T 117
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Q + ++ Y T++ ++ Y++ S+++ + L D L M+Q +
Sbjct: 118 AAQ-QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTF 176
>gi|163844322|ref|YP_001621977.1| hypothetical protein BSUIS_B0133 [Brucella suis ATCC 23445]
gi|163675045|gb|ABY39155.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 262
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL DM++A+ F++KIL
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEG 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
++D ++ N+L +Y+ FA +DF+ + QS + +I Y + KE + E
Sbjct: 82 VTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVRQTLEKEAGSQNE 141
Query: 141 ----SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
+ YF + + + ++ D+ LL V +F
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFG 177
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F+ +I + D +
Sbjct: 28 VERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEGVTDEDA 87
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +EK+ ++
Sbjct: 88 MANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ------GVIDKYVRQTLEKEAGSQNE 141
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVV 650
+ LALYF+R P++ N YEILGD L +V
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMV 172
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 112 VIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
++ + ++ I + +S Q KE + E+ Y+++NI + SVD D RL +Y ++
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+F + + F++ +LT G+ + + D R++ A F F G+ + + T
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQS---T 117
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Q + ++ Y T++ ++ Y++ S+++ + L D L M+Q +
Sbjct: 118 AAQ-QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTF 176
Query: 285 FPLNPEITAD 294
L+ AD
Sbjct: 177 GWLSTMSNAD 186
>gi|306841068|ref|ZP_07473791.1| flagellar basal-body rod protein FLGF [Brucella sp. BO2]
gi|306288906|gb|EFM60209.1| flagellar basal-body rod protein FLGF [Brucella sp. BO2]
Length = 262
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL DM++A+ F++KIL
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEG 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
++D ++ N+L +Y+ FA +DF+ + QS + +I Y + KE + E
Sbjct: 82 VTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVRQTLEKEAGSQNE 141
Query: 141 ----SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
+ YF + + + ++ D+ LL V +F
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFG 177
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F+ +I + D +
Sbjct: 28 VERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEGVTDEDA 87
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +EK+ ++
Sbjct: 88 MANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ------GVIDKYVRQTLEKEAGSQNE 141
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ LALYF+R P++ N YEILGD L +V + K+ +++ I +
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNADIDKQAKMIADKIDFS 201
Query: 680 DFKDSKKVEDFLYAAKAM 697
D V F+ AM
Sbjct: 202 KMSDPDYVSKFISRFTAM 219
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 112 VIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
++ + ++ I + +S Q KE + E+ Y+++NI + SVD D RL +Y ++
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+F + + F++ +LT G+ + + D R++ A F F G+ + + T
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQS---T 117
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Q + ++ Y T++ ++ Y++ S+++ + L D L M+Q +
Sbjct: 118 AAQ-QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTF 176
>gi|17989453|ref|NP_542086.1| flagellar basal-body rod protein FLGF [Brucella melitensis bv. 1
str. 16M]
gi|148558502|ref|YP_001257193.1| hypothetical protein BOV_A0118 [Brucella ovis ATCC 25840]
gi|225628602|ref|ZP_03786636.1| flagellar basal-body rod protein FLGF [Brucella ceti str. Cudo]
gi|225685988|ref|YP_002733960.1| hypothetical protein BMEA_B0130 [Brucella melitensis ATCC 23457]
gi|254699438|ref|ZP_05161266.1| hypothetical protein Bsuib55_01044 [Brucella suis bv. 5 str. 513]
gi|254706315|ref|ZP_05168143.1| hypothetical protein BpinM_04810 [Brucella pinnipedialis
M163/99/10]
gi|254711393|ref|ZP_05173204.1| hypothetical protein BpinB_14282 [Brucella pinnipedialis B2/94]
gi|254720630|ref|ZP_05182441.1| hypothetical protein Bru83_14188 [Brucella sp. 83/13]
gi|256029977|ref|ZP_05443591.1| hypothetical protein BpinM2_04885 [Brucella pinnipedialis
M292/94/1]
gi|256043050|ref|ZP_05445995.1| hypothetical protein Bmelb1R_01137 [Brucella melitensis bv. 1 str.
Rev.1]
gi|256059630|ref|ZP_05449827.1| hypothetical protein Bneo5_04665 [Brucella neotomae 5K33]
gi|256111964|ref|ZP_05452915.1| hypothetical protein Bmelb3E_04760 [Brucella melitensis bv. 3 str.
Ether]
gi|256158142|ref|ZP_05456058.1| hypothetical protein BcetM4_04805 [Brucella ceti M490/95/1]
gi|256252907|ref|ZP_05458443.1| hypothetical protein BcetB_01052 [Brucella ceti B1/94]
gi|256262886|ref|ZP_05465418.1| flagellar basal-body rod protein FLGF [Brucella melitensis bv. 2
str. 63/9]
gi|260564282|ref|ZP_05834767.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1
str. 16M]
gi|261219996|ref|ZP_05934277.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313762|ref|ZP_05952959.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261318999|ref|ZP_05958196.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261323600|ref|ZP_05962797.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261749889|ref|ZP_05993598.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|265985674|ref|ZP_06098409.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|265986998|ref|ZP_06099555.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265989488|ref|ZP_06102045.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993413|ref|ZP_06105970.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265996659|ref|ZP_06109216.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|294853151|ref|ZP_06793823.1| hypothetical protein BAZG_02096 [Brucella sp. NVSL 07-0026]
gi|306837354|ref|ZP_07470233.1| flagellar basal-body rod protein FLGF [Brucella sp. NF 2653]
gi|306846299|ref|ZP_07478860.1| flagellar basal-body rod protein FLGF [Brucella sp. BO1]
gi|17985332|gb|AAL54350.1| flagellar basal-body rod protein flgf [Brucella melitensis bv. 1
str. 16M]
gi|148369787|gb|ABQ62659.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
gi|225616448|gb|EEH13496.1| flagellar basal-body rod protein FLGF [Brucella ceti str. Cudo]
gi|225642093|gb|ACO02006.1| protein of unknown function DUF1217 [Brucella melitensis ATCC
23457]
gi|260151925|gb|EEW87018.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1
str. 16M]
gi|260918580|gb|EEX85233.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261298222|gb|EEY01719.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261299580|gb|EEY03077.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302788|gb|EEY06285.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261739642|gb|EEY27568.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|262550956|gb|EEZ07117.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|262764283|gb|EEZ10315.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263000157|gb|EEZ12847.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092723|gb|EEZ16932.1| flagellar basal-body rod protein FLGF [Brucella melitensis bv. 2
str. 63/9]
gi|264659195|gb|EEZ29456.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|264664266|gb|EEZ34527.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|294818806|gb|EFG35806.1| hypothetical protein BAZG_02096 [Brucella sp. NVSL 07-0026]
gi|306273294|gb|EFM55163.1| flagellar basal-body rod protein FLGF [Brucella sp. BO1]
gi|306407546|gb|EFM63746.1| flagellar basal-body rod protein FLGF [Brucella sp. NF 2653]
gi|326410314|gb|ADZ67378.1| flagellar basal-body rod protein FLGF [Brucella melitensis M28]
gi|326553607|gb|ADZ88246.1| flagellar basal-body rod protein FLGF [Brucella melitensis M5-90]
Length = 262
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL DM++A+ F++KIL
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEG 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
++D ++ N+L +Y+ FA +DF+ + QS + +I Y + KE + E
Sbjct: 82 VTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVRQTLEKEAGSQNE 141
Query: 141 ----SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
+ YF + + + ++ D+ LL V +F
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFG 177
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F+ +I + D +
Sbjct: 28 VERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEGVTDEDA 87
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +EK+ ++
Sbjct: 88 MANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ------GVIDKYVRQTLEKEAGSQNE 141
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ LALYF+R P++ N YEILGD L +V + K+ +++ I +
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNADIDKQAKMIADKIDFS 201
Query: 680 DFKDSKKVEDFLYAAKAM 697
D V F+ AM
Sbjct: 202 KMSDPDYVSKFISRFTAM 219
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 112 VIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
++ + ++ I + +S Q KE + E+ Y+++NI + SVD D RL +Y ++
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+F + + F++ +LT G+ + + D R++ A F F G+ + + T
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQS---T 117
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Q + ++ Y T++ ++ Y++ S+++ + L D L M+Q +
Sbjct: 118 AAQ-QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTF 176
>gi|256014917|ref|YP_003104926.1| hypothetical protein BMI_II127 [Brucella microti CCM 4915]
gi|255997577|gb|ACU49264.1| hypothetical protein BMI_II127 [Brucella microti CCM 4915]
Length = 258
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL DM++A+ F++KIL
Sbjct: 18 VSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEG 77
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
++D ++ N+L +Y+ FA +DF+ + QS + +I Y + KE + E
Sbjct: 78 VTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVRQTLEKEAGSQNE 137
Query: 141 ----SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
+ YF + + + ++ D+ LL V +F
Sbjct: 138 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFG 173
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F+ +I + D +
Sbjct: 24 VERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEGVTDEDA 83
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +EK+ ++
Sbjct: 84 MANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ------GVIDKYVRQTLEKEAGSQNE 137
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ LALYF+R P++ N YEILGD L +V + K+ +++ I +
Sbjct: 138 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNADIDKQAKMIADKIDFS 197
Query: 680 DFKDSKKVEDFLYAAKAM 697
D V F+ AM
Sbjct: 198 KMSDPDYVSKFISRFTAM 215
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 119 HKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ I + +S Q KE + E+ Y+++NI + SVD D RL +Y +++F +
Sbjct: 4 YRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDM 63
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKI 236
+ F++ +LT G+ + + D R++ A F F G+ + + T Q + +
Sbjct: 64 AYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQS---TAAQ-QGV 119
Query: 237 VSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
+ Y T++ ++ Y++ S+++ + L D L M+Q +
Sbjct: 120 IDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTF 172
>gi|227820851|ref|YP_002824821.1| hypothetical protein NGR_c02700 [Sinorhizobium fredii NGR234]
gi|227339850|gb|ACP24068.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length = 301
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 104/207 (50%), Gaps = 10/207 (4%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
S+E++S Q + E +YY I +I S +E A+ R+ ++ +++ G++ +
Sbjct: 59 GSLERVSEQP----VVARETEYYLSRIGSIKSLDEFFADSRLYDYAMKAHGLEDMAYAKA 114
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ + +FAN D+RYK ++ S NF HG+ + + Q D
Sbjct: 115 FMRKVLTEGIDSEDAFANKLADSRYKALVESLNFARHGD-TATSFERAQKG-----VVDK 168
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +E+ E++ + LALYF+R P I + YEI+ D L +VV L+L FA
Sbjct: 169 YARQTLEQNAGEENGGVRLALYFERMAPLITSGYEIIADEALAQVVRAALQLPEEFAAAD 228
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFL 691
++ ++ I + DF+D K+ F+
Sbjct: 229 VDRQAEAYEEAIDLKDFQDPVKLAAFI 255
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 10/176 (5%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+ DI L VS+ P+V+ E YY RI I ++DEF D RL+ YA+KA GL DM++A
Sbjct: 54 TADITGSL-ERVSEQPVVARETEYYLSRIGSIKSLDEFFADSRLYDYAMKAHGLEDMAYA 112
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS-DIQHKTIIQDYKQS 129
+ F++K+L + + N+L +Y+ S +F+ S + K ++ Y +
Sbjct: 113 KAFMRKVLTEGIDSEDAFANKLADSRYKALVESLNFARHGDTATSFERAQKGVVDKY--A 170
Query: 130 HQHKEEVALEESK------YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
Q E+ A EE+ YF + I S ++ D L V + + ++ +
Sbjct: 171 RQTLEQNAGEENGGVRLALYFERMAPLITSGYEIIADEALAQVVRAALQLPEEFAA 226
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 110 PKVIQSDIQHKTIIQDYKQSHQHKEE--VALEESKYFRKNIHKINSVDQLFKDRRLLDYV 167
P V + +K I D S + E V E++Y+ I I S+D+ F D RL DY
Sbjct: 41 PIVTTTYTSYKLITADITGSLERVSEQPVVARETEYYLSRIGSIKSLDEFFADSRLYDYA 100
Query: 168 LQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDG 219
+++ + + F++ VLT G+ + + + D+R++A+ E+ F G
Sbjct: 101 MKAHGLEDMAYAKAFMRKVLTEGIDSEDAFANKLADSRYKALVESLNFARHG 152
>gi|260568537|ref|ZP_05839006.1| flagellar basal-body rod protein FlgF [Brucella suis bv. 4 str. 40]
gi|260155202|gb|EEW90283.1| flagellar basal-body rod protein FlgF [Brucella suis bv. 4 str. 40]
Length = 262
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL DM++A+ F +KIL
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFARKILTEG 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
++D ++ N+L +Y+ FA +DF+ + QS + +I Y + KE + E
Sbjct: 82 VTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVRQTLEKEAGSQNE 141
Query: 141 ----SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
+ YF + + + ++ D+ LL V +F
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFG 177
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F +I + D +
Sbjct: 28 VERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFARKILTEGVTDEDA 87
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +EK+ ++
Sbjct: 88 MANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ------GVIDKYVRQTLEKEAGSQNE 141
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVV 650
+ LALYF+R P++ N YEILGD L +V
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMV 172
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 11/190 (5%)
Query: 112 VIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
++ + ++ I + +S Q KE + E+ Y+++NI + SVD D RL +Y ++
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+F + + F + +LT G+ + + D R++ A F F G+ + + T
Sbjct: 61 AFGLEDMAYAKAFARKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQS---T 117
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Q + ++ Y T++ ++ Y++ S+++ + L D L M+Q +
Sbjct: 118 AAQ-QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTF 176
Query: 285 FPLNPEITAD 294
L+ AD
Sbjct: 177 GWLSTMSNAD 186
>gi|62317079|ref|YP_222932.1| hypothetical protein BruAb2_0125 [Brucella abortus bv. 1 str.
9-941]
gi|189022346|ref|YP_001932087.1| Flagellar basal-body rod protein FLGF [Brucella abortus S19]
gi|237816641|ref|ZP_04595633.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|254691432|ref|ZP_05154686.1| Flagellar basal-body rod protein FLGF [Brucella abortus bv. 6 str.
870]
gi|254695269|ref|ZP_05157097.1| Flagellar basal-body rod protein FLGF [Brucella abortus bv. 3 str.
Tulya]
gi|254698368|ref|ZP_05160196.1| Flagellar basal-body rod protein FLGF [Brucella abortus bv. 2 str.
86/8/59]
gi|254731813|ref|ZP_05190391.1| Flagellar basal-body rod protein FLGF [Brucella abortus bv. 4 str.
292]
gi|256256618|ref|ZP_05462154.1| Flagellar basal-body rod protein FLGF [Brucella abortus bv. 9 str.
C68]
gi|260544320|ref|ZP_05820141.1| flagellar basal-body rod protein FLGF [Brucella abortus NCTC 8038]
gi|260757050|ref|ZP_05869398.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260759579|ref|ZP_05871927.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260762823|ref|ZP_05875155.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260882860|ref|ZP_05894474.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261215635|ref|ZP_05929916.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|297249975|ref|ZP_06933676.1| hypothetical protein BAYG_02750 [Brucella abortus bv. 5 str. B3196]
gi|62197272|gb|AAX75571.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|189020920|gb|ACD73641.1| Flagellar basal-body rod protein FLGF [Brucella abortus S19]
gi|237787454|gb|EEP61670.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|260097591|gb|EEW81465.1| flagellar basal-body rod protein FLGF [Brucella abortus NCTC 8038]
gi|260669897|gb|EEX56837.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260673244|gb|EEX60065.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260677158|gb|EEX63979.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260872388|gb|EEX79457.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260917242|gb|EEX84103.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|297173844|gb|EFH33208.1| hypothetical protein BAYG_02750 [Brucella abortus bv. 5 str. B3196]
Length = 262
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL DM++A+ F++KIL
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEG 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
++D ++ N+L +Y+ FA +DF+ + QS + +I Y + KE + E
Sbjct: 82 VTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVRQTLEKEAGSQNE 141
Query: 141 ----SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
+ YF + + + ++ D+ LL + +F
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFG 177
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F+ +I + D +
Sbjct: 28 VERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEGVTDEDA 87
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +EK+ ++
Sbjct: 88 MANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ------GVIDKYVRQTLEKEAGSQNE 141
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ LALYF+R P++ N YEILGD L ++ + K+ +++ I +
Sbjct: 142 GVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFGWPSTMSNADIDKQAKMIADKIDFS 201
Query: 680 DFKDSKKVEDFLYAAKAM 697
D V F+ AM
Sbjct: 202 KMSDPDYVSKFISRFTAM 219
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 112 VIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
++ + ++ I + +S Q KE + E+ Y+++NI + SVD D RL +Y ++
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+F + + F++ +LT G+ + + D R++ A F F G+ + + T
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQS---T 117
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Q + ++ Y T++ ++ Y++ S+++ + L D L MLQ +
Sbjct: 118 AAQ-QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMLQTTF 176
>gi|83269072|ref|YP_418363.1| flagellar basal-body rod protein FlgF [Brucella melitensis biovar
Abortus 2308]
gi|82939346|emb|CAJ12293.1| flagellar basal-body rod protein FlgF [Brucella melitensis biovar
Abortus 2308]
Length = 258
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL DM++A+ F++KIL
Sbjct: 18 VSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEG 77
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
++D ++ N+L +Y+ FA +DF+ + QS + +I Y + KE + E
Sbjct: 78 VTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVRQTLEKEAGSQNE 137
Query: 141 ----SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFS 172
+ YF + + + ++ D+ LL + +F
Sbjct: 138 GVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFG 173
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F+ +I + D +
Sbjct: 24 VERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILTEGVTDEDA 83
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +EK+ ++
Sbjct: 84 MANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ------GVIDKYVRQTLEKEAGSQNE 137
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ LALYF+R P++ N YEILGD L ++ + K+ +++ I +
Sbjct: 138 GVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFGWPSTMSNADIDKQAKMIADKIDFS 197
Query: 680 DFKDSKKVEDFLYAAKAM 697
D V F+ AM
Sbjct: 198 KMSDPDYVSKFISRFTAM 215
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 119 HKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ I + +S Q KE + E+ Y+++NI + SVD D RL +Y +++F +
Sbjct: 4 YRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDM 63
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKI 236
+ F++ +LT G+ + + D R++ A F F G+ + + T Q + +
Sbjct: 64 AYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQS---TAAQ-QGV 119
Query: 237 VSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
+ Y T++ ++ Y++ S+++ + L D L MLQ +
Sbjct: 120 IDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMLQTTF 172
>gi|182679721|ref|YP_001833867.1| hypothetical protein Bind_2809 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182635604|gb|ACB96378.1| protein of unknown function DUF1217 [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 259
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 90/163 (55%), Gaps = 5/163 (3%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
+K +T + +P VS E +YY + I ++TID F+ + RLF+YA+KAFGL DM +A+ ++
Sbjct: 16 TKTLATTASEPSVSRESKYYLDNISKVTTIDGFLNNNRLFTYAMKAFGLGDMVYAKGMVR 75
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYK----QSH 130
+IL+ SDP++L N LN +Y+ A+++DF+ + + ++ Y + +
Sbjct: 76 QILQQGTSDPRALANTLNDSRYKALAQTFDFANLGANATSTTTAGQNVVDKYVEMQLEDN 135
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSI 173
K E + Y ++ I S + D+ LL V +F++
Sbjct: 136 VGKNSPGAEMALYLKRVAPTITSAYSILADKTLLQIVQTTFNL 178
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 6/192 (3%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ E YY NI+ + + + L N R+ + +++ G+ + + +I + DP+
Sbjct: 27 SVSRESKYYLDNISKVTTIDGFLNNNRLFTYAMKAFGLGDMVYAKGMVRQILQQGTSDPR 86
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ ANT D+RYK + +F+F G + Q + D Y +E +
Sbjct: 87 ALANTLNDSRYKALAQTFDFANLGANATSTTTAGQ------NVVDKYVEMQLEDNVGKNS 140
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKI 678
P +ALY KR P I + Y IL D L ++V L + L + +++ +KI
Sbjct: 141 PGAEMALYLKRVAPTITSAYSILADKTLLQIVQTTFNLPSSMSALDIDVQAKMINSKMKI 200
Query: 679 NDFKDSKKVEDF 690
+D +D K++ F
Sbjct: 201 SDLQDPTKLQTF 212
>gi|163758008|ref|ZP_02165096.1| hypothetical protein HPDFL43_00245 [Hoeflea phototrophica DFL-43]
gi|162284297|gb|EDQ34580.1| hypothetical protein HPDFL43_00245 [Hoeflea phototrophica DFL-43]
Length = 260
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 10/206 (4%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
S+E+I++Q ++ E + Y I+ I S +E +A+ R+ N+ +++ G++ + F
Sbjct: 18 SIERIASQP----QVARESENYLSRISEIKSIDEFMADTRVFNYAMKAHGLEDMSYAKAF 73
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ D +FAN D RY++ +FNF HGE + Q T D Y
Sbjct: 74 MRKVLTEGTDDDNAFANQLADTRYRDFAEAFNFARHGETATIFTSAQQ------GTVDKY 127
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
+E++ + + LALYF+R P + + YEIL D+ L VV L L A
Sbjct: 128 HRLTLEEEAGADNTGVRLALYFERNAPELTSAYEILADNALADVVRTALGLPSELAATDI 187
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFL 691
K+ ++ I + DFKD +K++ FL
Sbjct: 188 DKQADLINSRIDLEDFKDPEKLDKFL 213
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 5/157 (3%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
++ P V+ E Y RI I +IDEF+ D R+F+YA+KA GL DMS+A+ F++K+L
Sbjct: 22 IASQPQVARESENYLSRISEIKSIDEFMADTRVFNYAMKAHGLEDMSYAKAFMRKVLTEG 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFS--PPPKVIQSDIQHKTIIQDYK---QSHQHKEEV 136
D + NQL +Y+ FA +++F+ I + Q T+ + ++ + +
Sbjct: 82 TDDDNAFANQLADTRYRDFAEAFNFARHGETATIFTSAQQGTVDKYHRLTLEEEAGADNT 141
Query: 137 ALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSI 173
+ + YF +N ++ S ++ D L D V + +
Sbjct: 142 GVRLALYFERNAPELTSAYEILADNALADVVRTALGL 178
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 112 VIQSDIQHKTIIQDYKQSHQH---KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL 168
+I + ++ I QD +S + + +VA E Y + I +I S+D+ D R+ +Y +
Sbjct: 1 MISTYTSYRLIAQDIPKSIERIASQPQVARESENYLSR-ISEIKSIDEFMADTRVFNYAM 59
Query: 169 QSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDG 219
++ + + F++ VLT G + + + D R+R AE F F G
Sbjct: 60 KAHGLEDMSYAKAFMRKVLTEGTDDDNAFANQLADTRYRDFAEAFNFARHG 110
>gi|217977818|ref|YP_002361965.1| protein of unknown function DUF1217 [Methylocella silvestris BL2]
gi|217503194|gb|ACK50603.1| protein of unknown function DUF1217 [Methylocella silvestris BL2]
Length = 259
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 93/165 (56%), Gaps = 5/165 (3%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
SK +T + D + E YY I + ++D+ +K++RL++Y LKA+GLSDM++A+ I+
Sbjct: 16 SKSLATAASDTVAKRETAYYEANIGKVKSVDDLMKNQRLYAYVLKAYGLSDMAYAKGLIR 75
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKV--IQSDIQHKT---IIQDYKQSH 130
K+L SD++D SL N L+ +Y+ A +Y+FS V I ++ Q T ++ +++
Sbjct: 76 KVLTSDVTDGASLANTLSGGRYKALAAAYNFSAKGAVGTISAEAQKTTKDNYVEQTLEAN 135
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
K+ + + YF++ + S + D+ LL V +F ++
Sbjct: 136 VGKQNDGAKMALYFKRIAPTVKSAYGILADKTLLGVVQTAFGLSA 180
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 6/189 (3%)
Query: 503 EVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFAN 562
E YY NI + S ++L+ N+R+ ++L++ G+ + + ++ SD+ D S AN
Sbjct: 31 ETAYYEANIGKVKSVDDLMKNQRLYAYVLKAYGLSDMAYAKGLIRKVLTSDVTDGASLAN 90
Query: 563 TYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIA 622
T RYK + +++NF G +G + T D Y Q +E +++
Sbjct: 91 TLSGGRYKALAAAYNFSAKGA-----VGTISAEAQ-KTTKDNYVEQTLEANVGKQNDGAK 144
Query: 623 LALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFK 682
+ALYFKR P +++ Y IL D L VV LS + + + + KI D +
Sbjct: 145 MALYFKRIAPTVKSAYGILADKTLLGVVQTAFGLSASMSQQNIDVQAKTINALFKIGDLQ 204
Query: 683 DSKKVEDFL 691
+ K++ +
Sbjct: 205 NPAKLQKLI 213
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 112 VIQSDIQHKTIIQDYKQS--HQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
++ S + + + +D+ +S + VA E+ Y+ NI K+ SVD L K++RL YVL+
Sbjct: 1 MLNSTLYYTMLTRDFSKSLATAASDTVAKRETAYYEANIGKVKSVDDLMKNQRLYAYVLK 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
++ ++ + ++ VLT + + R++A+A + F G++ I
Sbjct: 61 AYGLSDMAYAKGLIRKVLTSDVTDGASLANTLSGGRYKALAAAYNFSAKGAVG---TISA 117
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQN-------YYKLAINSVSSFSDFLKDPKLFKMLQL 282
+ Q + NY T++ V QN Y+K +V S L D L ++Q
Sbjct: 118 EAQ-KTTKDNYVEQTLEAN--VGKQNDGAKMALYFKRIAPTVKSAYGILADKTLLGVVQ- 173
Query: 283 SLFPLNPEIT 292
+ F L+ ++
Sbjct: 174 TAFGLSASMS 183
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
Y+ +GK+KS+D+L+ + + L AY L+ + +R VLTS+
Sbjct: 35 YEANIGKVKSVDDLMKNQR-------------LYAYVLKAYGLSDMAYAKGLIRKVLTSD 81
Query: 420 PSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDN 465
+D S AN R L A+NF+A G++G I +++ T +DN
Sbjct: 82 VTDGASLANTLSGGRYKALAAAYNFSAKGAVGTIS-AEAQKTTKDN 126
>gi|296444947|ref|ZP_06886909.1| protein of unknown function DUF1217 [Methylosinus trichosporium
OB3b]
gi|296257615|gb|EFH04680.1| protein of unknown function DUF1217 [Methylosinus trichosporium
OB3b]
Length = 266
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
Query: 15 QSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFI 74
QS S +K P V+ + +Y+ + I + ++D+F+K+ RLF+YA+ AFGL DM++A+ +
Sbjct: 14 QSLWQSMTAKQPDVATQTQYFEDNIGKVQSVDDFMKNDRLFNYAMTAFGLGDMTYAKGMM 73
Query: 75 KKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDYKQS---- 129
+K+LE +SD +L N LN+ + FA ++DF+ S ++ Y +
Sbjct: 74 QKVLEQGVSDNSALANTLNNANIKAFATAFDFADNGASTTSSSTLVDNVVSRYAEQSLED 133
Query: 130 HQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+Q ++ ++ + YF++N I SV + D ++L V + I+ + S
Sbjct: 134 NQGQQNPGVQLALYFQRNAPSITSVYGILADSKILSVVQTALGISTQTTS 183
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 97/199 (48%), Gaps = 6/199 (3%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ ++ Y+ NI + S ++ + N R+ N+ + + G+ + + ++ + + D
Sbjct: 26 DVATQTQYFEDNIGKVQSVDDFMKNDRLFNYAMTAFGLGDMTYAKGMMQKVLEQGVSDNS 85
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ ANT + K ++F+F +G + + +D+ Y Q +E + +++
Sbjct: 86 ALANTLNNANIKAFATAFDFADNGASTTSS------STLVDNVVSRYAEQSLEDNQGQQN 139
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKI 678
P + LALYF+R P+I + Y IL DSK+ VV L +S + +L + I
Sbjct: 140 PGVQLALYFQRNAPSITSVYGILADSKILSVVQTALGISTQTTSQSIDSQAAMLTSKLDI 199
Query: 679 NDFKDSKKVEDFLYAAKAM 697
DF+D KK++ F+ AM
Sbjct: 200 TDFQDPKKLQQFISRFAAM 218
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 124 QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFL 183
Q QS K+ +++YF NI K+ SVD K+ RL +Y + +F + + +
Sbjct: 14 QSLWQSMTAKQPDVATQTQYFEDNIGKVQSVDDFMKNDRLFNYAMTAFGLGDMTYAKGMM 73
Query: 184 KDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNN 243
+ VL G+++ + +A A F F +G+ + L D +VS Y
Sbjct: 74 QKVLEQGVSDNSALANTLNNANIKAFATAFDFADNGASTTSSSTLVD----NVVSRYAEQ 129
Query: 244 TID-----CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
+++ P V Y++ S++S L D K+ ++Q +L
Sbjct: 130 SLEDNQGQQNPGVQLALYFQRNAPSITSVYGILADSKILSVVQTAL 175
>gi|118589944|ref|ZP_01547348.1| flagellar basal-body rod protein flgf [Stappia aggregata IAM 12614]
gi|118437441|gb|EAV44078.1| flagellar basal-body rod protein flgf [Stappia aggregata IAM 12614]
Length = 262
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 21 TVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILES 80
TV+ DP+V + YYRE I+ I TIDEF+ D R+F+YA+ A GL DM +A+ FI+K+LE
Sbjct: 21 TVAADPMVERQTEYYRENIRDIKTIDEFLGDDRIFNYAMTAMGLEDMIYAKAFIRKVLEE 80
Query: 81 DLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQ-HKTIIQDYKQSHQHKEEVALE 139
D + NQL KY+ FA +++F + S + + I+Q Y H++ + +
Sbjct: 81 GTDDRGAFANQLADTKYKNFAETFNFKRYGETTTSFARTQEAIVQKY-----HRQTLEVR 135
Query: 140 ESK---------YFRKNIHKINSVDQLFKDRRLLDYVLQSFSI 173
E + YF + I + + DR L + V S +
Sbjct: 136 EGEQNQGVRLALYFERRAPDITNAYDVLADRALAEAVYTSLGL 178
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 6/192 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ + +YY NI I + +E L + RI N+ + + G++ + F+ ++ + D +
Sbjct: 28 VERQTEYYRENIRDIKTIDEFLGDDRIFNYAMTAMGLEDMIYAKAFIRKVLEEGTDDRGA 87
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
FAN D +YK +FNF +GE + + Q+ Y Q +E +E E++
Sbjct: 88 FANQLADTKYKNFAETFNFKRYGE-TTTSFARTQEAI-----VQKYHRQTLEVREGEQNQ 141
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ LALYF+R P+I N Y++L D L + V L L FA+ K+ L++ + +
Sbjct: 142 GVRLALYFERRAPDITNAYDVLADRALAEAVYTSLGLPQEFAMTDIDKQAAYLEERLDFS 201
Query: 680 DFKDSKKVEDFL 691
F D+ + FL
Sbjct: 202 KFGDADYLAKFL 213
>gi|328545468|ref|YP_004305577.1| flagellar basal-body rod protein flgf [polymorphum gilvum
SL003B-26A1]
gi|326415209|gb|ADZ72272.1| Flagellar basal-body rod protein flgf [Polymorphum gilvum
SL003B-26A1]
Length = 261
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 6/192 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E +YY NI S ++ L + R+ + +++ G+ + F+ ++ + D S
Sbjct: 28 VRRESEYYLANIGKAKSIDDFLGDDRLFKYAMKAFGLQDMDYAKAFMRKVLEEGTDDRNS 87
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
FAN D+RY++ +FNF +G+ + + Q D Y Q +E + E +
Sbjct: 88 FANKLADDRYRQFAETFNFTRYGD-AATAFTRAQQG-----VVDAYVRQSLEIQNGESNE 141
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ LALYF R I + Y+IL D L +VV L L FA+ K+ ++K + +
Sbjct: 142 GVRLALYFSRKAETIDSAYDILADRALAQVVYAALGLPDEFAMADVDKQAAFIEKRLDLE 201
Query: 680 DFKDSKKVEDFL 691
DFKD + VE FL
Sbjct: 202 DFKDPQAVEAFL 213
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 21 TVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILES 80
TV+ +P V E YY I +ID+F+ D RLF YA+KAFGL DM +A+ F++K+LE
Sbjct: 21 TVASEPTVRRESEYYLANIGKAKSIDDFLGDDRLFKYAMKAFGLQDMDYAKAFMRKVLEE 80
Query: 81 DLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYK-------QSHQHK 133
D S N+L +Y+ FA +++F+ + + + + D Q+ +
Sbjct: 81 GTDDRNSFANKLADDRYRQFAETFNFTRYGDAATAFTRAQQGVVDAYVRQSLEIQNGESN 140
Query: 134 EEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLAN 193
E V L + YF + I+S + DR L V + + LP D + +
Sbjct: 141 EGVRL--ALYFSRKAETIDSAYDILADRALAQVVYAA-------LGLP---DEFAMADVD 188
Query: 194 PKKYFIESR 202
+ FIE R
Sbjct: 189 KQAAFIEKR 197
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 9/150 (6%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
ES+Y+ NI K S+D D RL Y +++F + + F++ VL G + +
Sbjct: 31 ESEYYLANIGKAKSIDDFLGDDRLFKYAMKAFGLQDMDYAKAFMRKVLEEGTDDRNSFAN 90
Query: 200 ESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN---- 255
+ D+R+R AE F F G + T Q + +V Y +++ S++
Sbjct: 91 KLADDRYRQFAETFNFTRYGDAA---TAFTRAQ-QGVVDAYVRQSLEIQNGESNEGVRLA 146
Query: 256 -YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
Y+ ++ S D L D L +++ +L
Sbjct: 147 LYFSRKAETIDSAYDILADRALAQVVYAAL 176
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
Y +GK KSID+ L G +L ++A+ A+ L D + +R VL
Sbjct: 35 YLANIGKAKSIDDFL-GDDRL------------FKYAMKAFGLQDMDYAKAFMRKVLEEG 81
Query: 420 PSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDA 479
D +S+ANK DDR + FNF G D + ++ + DA
Sbjct: 82 TDDRNSFANKLADDRYRQFAETFNFTRYG---------------DAATAFTRAQQGVVDA 126
Query: 480 ENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGI 536
+ ++ + + + L + Y++ TI S ++LA++ + + + G+
Sbjct: 127 YVRQSLEIQNGESNEGVRLAL-----YFSRKAETIDSAYDILADRALAQVVYAALGL 178
>gi|110632663|ref|YP_672871.1| hypothetical protein Meso_0302 [Mesorhizobium sp. BNC1]
gi|110283647|gb|ABG61706.1| protein of unknown function DUF1217 [Chelativorans sp. BNC1]
Length = 258
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 98/194 (50%), Gaps = 10/194 (5%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
++ E YY NI + S EE +A+ R+ + +++ G++ + + + + + D S
Sbjct: 28 VSRETAYYQENIGKVKSIEEFVADDRLFRYAMKAHGLEDMAYAKALMVKALEGGIDDEDS 87
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFH--IDDTCDLYKHQMIEKKEEEK 617
F N D RYK+ + +FNF +GE + FH T + Y Q +E+ +
Sbjct: 88 FVNKLTDKRYKDFVDTFNFARYGEKTT--------TFHSSTTGTVEKYLRQTLEEDAGNQ 139
Query: 618 DPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIK 677
+ + LALYF+R +++++YEIL D L +VV L A K+ ++K+ +
Sbjct: 140 NEGVRLALYFQRKAGSLKSYYEILADPALSQVVRTALGFPDALAQADIDKQAEMIKERLD 199
Query: 678 INDFKDSKKVEDFL 691
+ + D +K+E+FL
Sbjct: 200 LEELNDPEKLEEFL 213
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
V + P+VS E YY+E I + +I+EF+ D RLF YA+KA GL DM++A+ + K LE
Sbjct: 22 VEQQPMVSRETAYYQENIGKVKSIEEFVADDRLFRYAMKAHGLEDMAYAKALMVKALEGG 81
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFS 107
+ D S VN+L +Y+ F +++F+
Sbjct: 82 IDDEDSFVNKLTDKRYKDFVDTFNFA 107
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 85/185 (45%), Gaps = 16/185 (8%)
Query: 112 VIQSDIQHKTIIQDYKQSHQHKEEVAL--EESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
+I + ++ I++D ++S E+ + E+ Y+++NI K+ S+++ D RL Y ++
Sbjct: 1 MINTYTSYQLIVRDIERSIDRVEQQPMVSRETAYYQENIGKVKSIEEFVADDRLFRYAMK 60
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+ + + + L G+ + + + D R++ + F F G + T
Sbjct: 61 AHGLEDMAYAKALMVKALEGGIDDEDSFVNKLTDKRYKDFVDTFNFARYGEKTTTFHSST 120
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQN-------YYKLAINSVSSFSDFLKDPKLFKMLQL 282
+EK Y T++ +QN Y++ S+ S+ + L DP L ++++
Sbjct: 121 TGTVEK----YLRQTLE--EDAGNQNEGVRLALYFQRKAGSLKSYYEILADPALSQVVRT 174
Query: 283 SL-FP 286
+L FP
Sbjct: 175 ALGFP 179
>gi|312115256|ref|YP_004012852.1| hypothetical protein Rvan_2538 [Rhodomicrobium vannielii ATCC
17100]
gi|311220385|gb|ADP71753.1| protein of unknown function DUF1217 [Rhodomicrobium vannielii ATCC
17100]
Length = 264
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 12/221 (5%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ S+ +YY NI I S +EL+ + ++ ++ L + G+ +V L + S+ D S
Sbjct: 28 VASQTEYYKANIGNITSADELVGDYKLFSYALTAYGL-GDEVYAKALYKKVLSEGTDKGS 86
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
++ E+ +FNF+ +G S VQ+ D DLY Q +E+K+ E +
Sbjct: 87 LSSKLGKLGVTELAKTFNFEENGT-STTTSDAVQN-----DVVDLYLAQTLEEKQGETNE 140
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ALYF R I + Y+IL D L K V L LS Y A + K+ +L K + +N
Sbjct: 141 GAQMALYFYRNASKIDSVYDILADKTLLKTVYTALGLSEYTAAMNIDKQASLLSKALDLN 200
Query: 680 DFKDSKKVEDFLYAAKAM-----DHQSIDYKKALFSSPNQN 715
DFKD +K+ F+ + ++ + DY ALF + + N
Sbjct: 201 DFKDPQKLTSFIAKFSTLYDSENNNTASDYVSALFGTSSSN 241
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
SK + +P V+ + YY+ I +I++ DE + D +LFSYAL A+GL D +A+ K
Sbjct: 16 SKWTEITAAEPSVASQTEYYKANIGNITSADELVGDYKLFSYALTAYGLGDEVYAKALYK 75
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDF------SPPPKVIQSDIQHKTIIQDYKQS 129
K+L S+ +D SL ++L L A++++F + +Q+D+ + Q ++
Sbjct: 76 KVL-SEGTDKGSLSSKLGKLGVTELAKTFNFEENGTSTTTSDAVQNDVVDLYLAQTLEEK 134
Query: 130 HQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSIT 174
E A + + YF +N KI+SV + D+ LL V + ++
Sbjct: 135 QGETNEGA-QMALYFYRNASKIDSVYDILADKTLLKTVYTALGLS 178
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
+++Y++ NI I S D+L D +L Y L ++ + + + K VL+ G K +
Sbjct: 31 QTEYYKANIGNITSADELVGDYKLFSYALTAYGLGDEVYAKALYKKVLSEG---TDKGSL 87
Query: 200 ESRDNRFRA--MAENFRFQPDG-SLSKRDKILTDM 231
S+ + +A+ F F+ +G S + D + D+
Sbjct: 88 SSKLGKLGVTELAKTFNFEENGTSTTTSDAVQNDV 122
>gi|153011531|ref|YP_001372745.1| hypothetical protein Oant_4216 [Ochrobactrum anthropi ATCC 49188]
gi|151563419|gb|ABS16916.1| protein of unknown function DUF1217 [Ochrobactrum anthropi ATCC
49188]
Length = 264
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 90/165 (54%), Gaps = 10/165 (6%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I + +ID+F+ D RL++YA+KAFGL DM+ A+ F++KIL
Sbjct: 24 VSKEPMVERETAYYKENIGKVKSIDDFMADSRLYNYAMKAFGLEDMAFAKAFVRKILTEG 83
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQHKTIIQDY------KQSHQHKE 134
++ ++ N+L +Y+ FA +DF+ + +S + ++ Y ++ E
Sbjct: 84 ITSDDAMANKLTDKRYKEFATVFDFAGKGAEATESTAAQQGVVDKYLRQTLETEAGSQNE 143
Query: 135 EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
V L + YF + I + ++ D+ L+ + +F P IS
Sbjct: 144 GVRL--ALYFARKAPTITNAYEILGDKALVSMIQTTFGW-PSSIS 185
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ +++ G++ + F+ +I + +
Sbjct: 30 VERETAYYKENIGKVKSIDDFMADSRLYNYAMKAFGLEDMAFAKAFVRKILTEGITSDDA 89
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F G + + Q D Y Q +E + ++
Sbjct: 90 MANKLTDKRYKEFATVFDFAGKGAEATESTAAQQ------GVVDKYLRQTLETEAGSQNE 143
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVV 650
+ LALYF R P I N YEILGD L ++
Sbjct: 144 GVRLALYFARKAPTITNAYEILGDKALVSMI 174
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 11/181 (6%)
Query: 111 KVIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL 168
+++ + ++ I D +S Q KE + E+ Y+++NI K+ S+D D RL +Y +
Sbjct: 2 RMVDTMTSYRLIASDMARSLQRVSKEPMVERETAYYKENIGKVKSIDDFMADSRLYNYAM 61
Query: 169 QSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKIL 228
++F + + F++ +LT G+ + + D R++ A F F G+ +
Sbjct: 62 KAFGLEDMAFAKAFVRKILTEGITSDDAMANKLTDKRYKEFATVFDFAGKGAEATES--- 118
Query: 229 TDMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLS 283
T Q + +V Y T++ ++ Y+ ++++ + L D L M+Q +
Sbjct: 119 TAAQ-QGVVDKYLRQTLETEAGSQNEGVRLALYFARKAPTITNAYEILGDKALVSMIQTT 177
Query: 284 L 284
Sbjct: 178 F 178
>gi|239834449|ref|ZP_04682777.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
gi|239822512|gb|EEQ94081.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
Length = 264
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 10/165 (6%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
VSK+P+V E YY+E I + ++D+F+ D RL++YALKAFGL DM+ A+ F++KIL
Sbjct: 24 VSKEPMVERETAYYKENIGKVKSVDDFMADSRLYNYALKAFGLEDMAFAKAFVRKILTEG 83
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQHKTIIQDY------KQSHQHKE 134
+ ++ N+L +Y+ FA +DF + QS + ++ Y ++ E
Sbjct: 84 IKSDDAMANKLTDKRYKEFATVFDFEGKGAEATQSTAAQQGVVDKYLRQTLETEAGSQNE 143
Query: 135 EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
V L + YF++ + + ++ D+ L+ + +F P IS
Sbjct: 144 GVRL--ALYFQRKAPTLTNAYEILGDKALVSMIQTTFGW-PSTIS 185
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY NI + S ++ +A+ R+ N+ L++ G++ + F+ +I +K +
Sbjct: 30 VERETAYYKENIGKVKSVDDFMADSRLYNYALKAFGLEDMAFAKAFVRKILTEGIKSDDA 89
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D RYKE + F+F+ G + + Q D Y Q +E + ++
Sbjct: 90 MANKLTDKRYKEFATVFDFEGKGAEATQSTAAQQ------GVVDKYLRQTLETEAGSQNE 143
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVV 650
+ LALYF+R P + N YEILGD L ++
Sbjct: 144 GVRLALYFQRKAPTLTNAYEILGDKALVSMI 174
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 86/181 (47%), Gaps = 11/181 (6%)
Query: 111 KVIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL 168
+++ + ++ I D +S Q KE + E+ Y+++NI K+ SVD D RL +Y L
Sbjct: 2 RMVDTMTSYRLIASDMARSLQRVSKEPMVERETAYYKENIGKVKSVDDFMADSRLYNYAL 61
Query: 169 QSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKIL 228
++F + + F++ +LT G+ + + D R++ A F F+ G+ + +
Sbjct: 62 KAFGLEDMAFAKAFVRKILTEGIKSDDAMANKLTDKRYKEFATVFDFEGKGAEATQS--- 118
Query: 229 TDMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLS 283
T Q + +V Y T++ ++ Y++ ++++ + L D L M+Q +
Sbjct: 119 TAAQ-QGVVDKYLRQTLETEAGSQNEGVRLALYFQRKAPTLTNAYEILGDKALVSMIQTT 177
Query: 284 L 284
Sbjct: 178 F 178
>gi|126730141|ref|ZP_01745953.1| flagellar protein, putative [Sagittula stellata E-37]
gi|126709521|gb|EBA08575.1| flagellar protein, putative [Sagittula stellata E-37]
Length = 397
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 135/309 (43%), Gaps = 44/309 (14%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
Y++E+I +++ D+ + D+RL S AL AFGLSD + IK++L + +L N+L
Sbjct: 36 YFKEKIGGVTSGDDLVNDRRLLSVALAAFGLSDQIDSAYLIKRVLNEGAENDDALANKLK 95
Query: 94 SLKYQYFARSYDFSPPP------------------KVIQSDIQHKTIIQDYKQSHQHKEE 135
+Y AR++ F K I+SD+ +Y + E
Sbjct: 96 DGRYVALARAFSFEETTNFPFQEEGFAGDILASYDKRIRSDLADLLEEPEYANNPIAAET 155
Query: 136 V------ALEESK-YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
+ LE +K YFR+ I + SVD L KD LL L +F + + S LK V
Sbjct: 156 LEATVLDGLETTKTYFRETIGSVTSVDDLMKDNDLLKVALTAFGVEERTNSKTLLKRVFE 215
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY----FNNT 244
G NP D AM + F F + + + R + D KI+ NY F +
Sbjct: 216 EGATNPGALANVLGDKGLIAMTKAFGFDTEPTTAIRTEEFAD----KIIDNYQWQAFEDA 271
Query: 245 IDCV-PIVSDQNYYKLAINSVSSFS--------DFLKDPKLFKMLQLSL-FPLN-PEITA 293
++ V P + ++ +++ S + L D + ++ Q +L P + +I
Sbjct: 272 VNEVNPTIGTALSFQRGAPALAGLSGSENTKWFNVLGDSTMREVFQTALGLPSSFSQIDI 331
Query: 294 DKFLTLMQE 302
DK + +M+E
Sbjct: 332 DKQVEMMKE 340
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 124/317 (39%), Gaps = 46/317 (14%)
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFN--------F 444
L AL A+ L+ Q ++ VL + D+ ANK KD R + L AF+ F
Sbjct: 57 LSVALAAFGLSDQIDSAYLIKRVLNEGAENDDALANKLKDGRYVALARAFSFEETTNFPF 116
Query: 445 NADGSIGPIPMMQSRLTIRDNVK------HYANRKRSIHDAENKSFNSMEQISTQKRINL 498
+G G I + IR ++ YAN + E + +E T
Sbjct: 117 QEEGFAGDILASYDK-RIRSDLADLLEEPEYANNPIAAETLEATVLDGLETTKT------ 169
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
Y+ I ++ S ++L+ + +L L + G++ + + L +F+ +P
Sbjct: 170 -------YFRETIGSVTSVDDLMKDNDLLKVALTAFGVEERTNSKTLLKRVFEEGATNPG 222
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ AN D + +F FD ++ D D Y+ Q E E +
Sbjct: 223 ALANVLGDKGLIAMTKAFGFDTE------PTTAIRTEEFADKIIDNYQWQAFEDAVNEVN 276
Query: 619 PNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR 670
P I AL F+R P + + +LGDS + +V L L F+ + K++
Sbjct: 277 PTIGTALSFQRGAPALAGLSGSENTKWFNVLGDSTMREVFQTALGLPSSFSQIDIDKQVE 336
Query: 671 ILKK----HIKINDFKD 683
++K+ I FKD
Sbjct: 337 MMKEKAASRFGITQFKD 353
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
+++YF++ I + S D L DRRLL L +F ++ + S +K VL G N
Sbjct: 33 DTEYFKEKIGGVTSGDDLVNDRRLLSVALAAFGLSDQIDSAYLIKRVLNEGAENDDALAN 92
Query: 200 ESRDNRFRAMAE--------NFRFQPDG----SLSKRDK-ILTDMQIEKIVSNYFNNTID 246
+ +D R+ A+A NF FQ +G L+ DK I +D+ Y NN I
Sbjct: 93 KLKDGRYVALARAFSFEETTNFPFQEEGFAGDILASYDKRIRSDLADLLEEPEYANNPIA 152
Query: 247 CVPIV--------SDQNYYKLAINSVSSFSDFLKDPKLFKM 279
+ + + Y++ I SV+S D +KD L K+
Sbjct: 153 AETLEATVLDGLETTKTYFRETIGSVTSVDDLMKDNDLLKV 193
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 18/164 (10%)
Query: 503 EVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFAN 562
+ +Y+ I + S ++L+ ++R+L+ L + G+ Q + + ++ + AN
Sbjct: 33 DTEYFKEKIGGVTSGDDLVNDRRLLSVALAAFGLSDQIDSAYLIKRVLNEGAENDDALAN 92
Query: 563 TYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD---TCDLYKHQMIEKKEEEKDP 619
KD RY + +F+F+ ++ G D D DL ++E+ E +P
Sbjct: 93 KLKDGRYVALARAFSFEETTNFPFQEEGFAGDILASYDKRIRSDL--ADLLEEPEYANNP 150
Query: 620 NIALAL-------------YFKRTIPNIRNHYEILGDSKLFKVV 650
A L YF+ TI ++ + +++ D+ L KV
Sbjct: 151 IAAETLEATVLDGLETTKTYFRETIGSVTSVDDLMKDNDLLKVA 194
>gi|260428823|ref|ZP_05782800.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260419446|gb|EEX12699.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 399
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 132/309 (42%), Gaps = 32/309 (10%)
Query: 384 NSAEEPI---ITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNH 440
NSAEE + L AL A+ ++ Q + +R VL D D+ ANK D R L
Sbjct: 45 NSAEELVNDRRLLSVALSAFGMDDQIDSKYLIRRVLEEGTKDDDALANKLSDSRFTVLAE 104
Query: 441 AFNFNADGS--------IGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQIST 492
F+F G PI + + D A + D E + T
Sbjct: 105 VFDFEKTGGYRMQEEGFADPIFAAYEKKVLADLEVKLAE-PEYVADPEYAAL-----FET 158
Query: 493 QKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKS 552
Q + N+EI+ E Y+ NI +I S +ELL + ++ ++ + GI+ ++ + L + +
Sbjct: 159 QVKRNIEISRE--YFNDNIGSITSPDELLLDFDLMQVVMGAFGIEDRRGSKALLKRVLEE 216
Query: 553 DLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEK 612
DP + AN D R + +F+FD +Q + ++ + Y+ Q E
Sbjct: 217 GASDPNALANVLGDKRLIRLAEAFSFD-----KSVPTNALQADSFANNIVEQYRWQRFED 271
Query: 613 KEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLP 664
E DP I AL F+R+IP++ Y ILG + VV L L F+ +
Sbjct: 272 AVGEVDPAIGTALQFQRSIPDLATSDISDSAKWYSILGSTTSRSVVETALSLPKGFSQID 331
Query: 665 ERKKIRILK 673
K++ ILK
Sbjct: 332 IDKQVEILK 340
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 25/213 (11%)
Query: 28 VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKS 87
++ + Y++E+I I++ +E + D+RL S AL AFG+ D ++ I+++LE D +
Sbjct: 30 ITRDSEYFKEKIGTINSAEELVNDRRLLSVALSAFGMDDQIDSKYLIRRVLEEGTKDDDA 89
Query: 88 LVNQLNSLKYQYFARSYDFSPPPKV-IQSDIQHKTIIQDYKQSHQHKEEVALEE------ 140
L N+L+ ++ A +DF +Q + I Y++ EV L E
Sbjct: 90 LANKLSDSRFTVLAEVFDFEKTGGYRMQEEGFADPIFAAYEKKVLADLEVKLAEPEYVAD 149
Query: 141 ------------------SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPF 182
+YF NI I S D+L D L+ V+ +F I + S
Sbjct: 150 PEYAALFETQVKRNIEISREYFNDNIGSITSPDELLLDFDLMQVVMGAFGIEDRRGSKAL 209
Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAENFRF 215
LK VL G ++P D R +AE F F
Sbjct: 210 LKRVLEEGASDPNALANVLGDKRLIRLAEAFSF 242
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
+ LF T K I E Y+ + I I++ DE + D L + AFG+ D ++ +K
Sbjct: 153 AALFETQVKRNIEISRE-YFNDNIGSITSPDELLLDFDLMQVVMGAFGIEDRRGSKALLK 211
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDF--SPPPKVIQSDIQHKTIIQDYK 127
++LE SDP +L N L + A ++ F S P +Q+D I++ Y+
Sbjct: 212 RVLEEGASDPNALANVLGDKRLIRLAEAFSFDKSVPTNALQADSFANNIVEQYR 265
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
+S+YF++ I INS ++L DRRLL L +F + + S ++ VL G +
Sbjct: 33 DSEYFKEKIGTINSAEELVNDRRLLSVALSAFGMDDQIDSKYLIRRVLEEGTKDDDALAN 92
Query: 200 ESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ D+RF +AE F F+ G +++ D
Sbjct: 93 KLSDSRFTVLAEVFDFEKTGGYRMQEEGFAD 123
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
EI + +Y+ I TI+S EEL+ ++R+L+ L + G+D Q + + + + KD
Sbjct: 29 EITRDSEYFKEKIGTINSAEELVNDRRLLSVALSAFGMDDQIDSKYLIRRVLEEGTKDDD 88
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIG 590
+ AN D+R+ + F+F+ G ++ G
Sbjct: 89 ALANKLSDSRFTVLAEVFDFEKTGGYRMQEEG 120
>gi|254500914|ref|ZP_05113065.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11]
gi|222436985|gb|EEE43664.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11]
Length = 276
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 87/160 (54%), Gaps = 5/160 (3%)
Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKIL 78
+TV+ DP+V + YYRE I++I ++D+F+ D R++ YA+ A GL DM +A+ F++K+L
Sbjct: 32 LATVAADPVVDRQTEYYRENIRNIKSVDDFMADDRIYRYAMTAMGLEDMIYAKAFMRKVL 91
Query: 79 ESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQD--YKQSHQHKEEV 136
+ + NQL KY+ FA +++F+ + S + + I D ++Q+ + KE
Sbjct: 92 TEGTASRAAFANQLADSKYRNFAETFNFANYGETATSFSRTQEGIVDKFHRQTLEVKEGA 151
Query: 137 ---ALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSI 173
+ + YF + +I + DR L + V + +
Sbjct: 152 QNDGVRLALYFERKASEITGPFDILADRALAETVRTALGL 191
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 6/177 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
++ + +YY NI I S ++ +A+ RI + + + G++ + F+ ++ +
Sbjct: 41 VDRQTEYYRENIRNIKSVDDFMADDRIYRYAMTAMGLEDMIYAKAFMRKVLTEGTASRAA 100
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
FAN D++Y+ +FNF +GE + + Q+ D + Q +E KE ++
Sbjct: 101 FANQLADSKYRNFAETFNFANYGE-TATSFSRTQEGI-----VDKFHRQTLEVKEGAQND 154
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI 676
+ LALYF+R I ++IL D L + V L L FA+ K+ KH+
Sbjct: 155 GVRLALYFERKASEITGPFDILADRALAETVRTALGLPDAFALTDIDKQAEYFDKHL 211
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
+++Y+R+NI I SVD D R+ Y + + + + F++ VLT G A+ +
Sbjct: 44 QTEYYRENIRNIKSVDDFMADDRIYRYAMTAMGLEDMIYAKAFMRKVLTEGTASRAAFAN 103
Query: 200 ESRDNRFRAMAENFRFQPDGSLS 222
+ D+++R AE F F G +
Sbjct: 104 QLADSKYRNFAETFNFANYGETA 126
>gi|27381994|ref|NP_773523.1| hypothetical protein blr6883 [Bradyrhizobium japonicum USDA 110]
gi|27355164|dbj|BAC52148.1| blr6883 [Bradyrhizobium japonicum USDA 110]
Length = 270
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 10/212 (4%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
SM Q++TQ +++ E DY+ +I + + ++ L + R+ + +++ G+ + F
Sbjct: 26 SMTQVATQP----DVSRETDYFLSHIGNVKTIDDFLKDYRLYTYAMKAYGLSDMTYAKAF 81
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ + + +FAN D RY+E ++FNF G+ + + Y
Sbjct: 82 MRKVLTEGVSNKDAFANKLTDARYREFATAFNFAALGDKATQTTAATTGTATQ------Y 135
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
Q +E+K +++ + LALYF R I N Y+IL D L +VV + S +
Sbjct: 136 VTQTMEQKAGDQNEGLRLALYFTRKASTITNAYQILADKALTQVVQTAMGWSSTISSSDI 195
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
+ +++ I + DF+D KV F+ AM
Sbjct: 196 DAQAKMITDKIDLTDFQDPTKVTKFVQRFAAM 227
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 8/163 (4%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+KD+ K + V+ P VS E Y+ I ++ TID+F+KD RL++YA+KA+GLSDM++A
Sbjct: 20 TKDL-GKSMTQVATQPDVSRETDYFLSHIGNVKTIDDFLKDYRLYTYAMKAYGLSDMTYA 78
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP------PPKVIQSDIQHKTIIQ 124
+ F++K+L +S+ + N+L +Y+ FA +++F+ + + + Q
Sbjct: 79 KAFMRKVLTEGVSNKDAFANKLTDARYREFATAFNFAALGDKATQTTAATTGTATQYVTQ 138
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYV 167
+Q + E L + YF + I + Q+ D+ L V
Sbjct: 139 TMEQKAGDQNE-GLRLALYFTRKASTITNAYQILADKALTQVV 180
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 139 EESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYF 198
E+ YF +I + ++D KD RL Y ++++ ++ + F++ VLT G++N +
Sbjct: 38 RETDYFLSHIGNVKTIDDFLKDYRLYTYAMKAYGLSDMTYAKAFMRKVLTEGVSNKDAFA 97
Query: 199 IESRDNRFRAMAENFRFQPDG 219
+ D R+R A F F G
Sbjct: 98 NKLTDARYREFATAFNFAALG 118
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 359 DYQLP-LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLT 417
DY L +G +K+ID+ L + + T +A+ AY L+ + +R VLT
Sbjct: 41 DYFLSHIGNVKTIDDFLK-----------DYRLYT--YAMKAYGLSDMTYAKAFMRKVLT 87
Query: 418 SNPSDPDSYANKSKDDRLIKLNHAFNFNADG 448
S+ D++ANK D R + AFNF A G
Sbjct: 88 EGVSNKDAFANKLTDARYREFATAFNFAALG 118
>gi|13472569|ref|NP_104136.1| hypothetical protein mlr2906 [Mesorhizobium loti MAFF303099]
gi|14023315|dbj|BAB49922.1| mlr2906 [Mesorhizobium loti MAFF303099]
Length = 210
Score = 87.8 bits (216), Expect = 6e-15, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 521 LANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDI 580
++N R+ + L + G+DS + + ++ + ++DP S AN K+ Y + S+FNF+
Sbjct: 1 MSNSRLYTYALAAYGLDSATEDKTLIKQVLQGGVRDPNSVANKQKNPAYAALASAFNFEQ 60
Query: 581 HGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEI 640
+GE + + Q T D Y Q +E+ + + LALYF+R P+I + Y++
Sbjct: 61 YGENATTIVPAQQP------TVDKYMRQSLEEDAGNTNAGVRLALYFQRKAPDITSWYDV 114
Query: 641 LGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
L D+ L VV L L FA K+ ++ ++ + I+DF D K+ FL +M
Sbjct: 115 LADTALASVVRTALGLPDSFATADIDKQAQLFEQKLDISDFTDPVKLGKFLTRFTSM 171
Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 49 IKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF 106
+ + RL++YAL A+GL + + IK++L+ + DP S+ N+ + Y A +++F
Sbjct: 1 MSNSRLYTYALAAYGLDSATEDKTLIKQVLQGGVRDPNSVANKQKNPAYAALASAFNF 58
Score = 38.5 bits (88), Expect = 4.7, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 395 FALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADG 448
+AL AY L+ D+ ++ VL DP+S ANK K+ L AFNF G
Sbjct: 9 YALAAYGLDSATEDKTLIKQVLQGGVRDPNSVANKQKNPAYAALASAFNFEQYG 62
>gi|158424043|ref|YP_001525335.1| hypothetical protein AZC_2419 [Azorhizobium caulinodans ORS 571]
gi|158330932|dbj|BAF88417.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
Length = 325
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 14/207 (6%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
++EQ +T LE + + +I +I S ++ + N R+ + +++ G++ + +
Sbjct: 89 ALEQEATTGSTKLETAN----FEKSIGSITSVDDFVNNYRVFTYAMKAYGLEDMAYAKAY 144
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGE-LSHKKIGKVQDNFHIDDTCDL 604
+ ++ +SDL D SFAN+ D R+K +F +GE +S + V+
Sbjct: 145 MKKVLESDLTDDSSFANSLSDGRFKAFAQAFQSLTYGEAVSSDTVSTVETK--------- 195
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +E D + LALYFKR + + Y IL D L+KVV + +
Sbjct: 196 YAQQTMEDNAGASDTGVQLALYFKRNASTVTSAYSILADEALYKVVKATYNIPDEMSNAG 255
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFL 691
+ ++ KHI I + +D V+ L
Sbjct: 256 IEAQAALISKHIDIEELQDPDYVDKLL 282
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 83/147 (56%), Gaps = 5/147 (3%)
Query: 31 EERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVN 90
E + + I I+++D+F+ + R+F+YA+KA+GL DM++A+ ++KK+LESDL+D S N
Sbjct: 102 ETANFEKSIGSITSVDDFVNNYRVFTYAMKAYGLEDMAYAKAYMKKVLESDLTDDSSFAN 161
Query: 91 QLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQS----HQHKEEVALEESKYFRK 146
L+ +++ FA+++ + + SD T+ Y Q + + ++ + YF++
Sbjct: 162 SLSDGRFKAFAQAFQSLTYGEAVSSDTV-STVETKYAQQTMEDNAGASDTGVQLALYFKR 220
Query: 147 NIHKINSVDQLFKDRRLLDYVLQSFSI 173
N + S + D L V +++I
Sbjct: 221 NASTVTSAYSILADEALYKVVKATYNI 247
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
E+ F K+I I SVD + R+ Y ++++ + + ++K VL L + +
Sbjct: 102 ETANFEKSIGSITSVDDFVNNYRVFTYAMKAYGLEDMAYAKAYMKKVLESDLTDDSSFAN 161
Query: 200 ESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN---- 255
D RF+A A+ F+ SL+ + + +D + + + Y T++ SD
Sbjct: 162 SLSDGRFKAFAQAFQ-----SLTYGEAVSSDT-VSTVETKYAQQTMEDNAGASDTGVQLA 215
Query: 256 -YYKLAINSVSSFSDFLKDPKLFKMLQLS 283
Y+K ++V+S L D L+K+++ +
Sbjct: 216 LYFKRNASTVTSAYSILADEALYKVVKAT 244
>gi|126031430|pdb|2O8S|A Chain A, X-Ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120.
gi|126031431|pdb|2O8S|B Chain B, X-Ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120
Length = 323
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
S+E++S Q ++ E +YY I ++ S ++ A+ R+ N+ L++ G++ + F
Sbjct: 71 SLERVSKQP----DVARETEYYREKIGSVKSIDDFXADTRLYNYALKAHGLEDXAYAKAF 126
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNF----DIHGELSHKKIGKVQDNFHIDDT 601
+ ++ D +FAN DNRY E+ S +F K G + +
Sbjct: 127 IRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGN------- 179
Query: 602 CDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFA 661
Y Q +E++ + + + LALYF+R P I++ + L D L +V L FA
Sbjct: 180 ---YARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFA 236
Query: 662 VLPERKKIRILKKHIKINDFKDSKKVEDFL 691
K+ +++K I I D +D +KV L
Sbjct: 237 AADVDKQAALIEKSINIKDLQDPEKVGKLL 266
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
S+DI K VSK P V+ E YYRE+I + +ID+F D RL++YALKA GL D ++A
Sbjct: 65 SQDI-GKSLERVSKQPDVARETEYYREKIGSVKSIDDFXADTRLYNYALKAHGLEDXAYA 123
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF 106
+ FI+K+L SD + N+L+ +Y A+S DF
Sbjct: 124 KAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDF 159
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 25/234 (10%)
Query: 112 VIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
V + ++ I QD +S + K+ E++Y+R+ I + S+D D RL +Y L+
Sbjct: 54 VTSTYTSYRLISQDIGKSLERVSKQPDVARETEYYREKIGSVKSIDDFXADTRLYNYALK 113
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+ + + F++ VLT G ++ + + DNR+ +A++ F T
Sbjct: 114 AHGLEDXAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFA----GLGAAATAT 169
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAI------NSVSSFSDFLKDPKLFKMLQLS 283
+ ++ NY T++ D N +LA+ ++ S DFL D L ++ + +
Sbjct: 170 EAAKSGVIGNYARQTLE-QEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFR-T 227
Query: 284 LFPLNPEITA---DKFLTLMQEN-------DP-IVSQVKYFFQINFHRDNSSST 326
F L A DK L++++ DP V ++ F I + N S+T
Sbjct: 228 TFNLPDAFAAADVDKQAALIEKSINIKDLQDPEKVGKLLERFTIXWEXQNPSTT 281
>gi|121601650|ref|YP_989406.1| hypothetical protein BARBAKC583_1147 [Bartonella bacilliformis
KC583]
gi|120613827|gb|ABM44428.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
Length = 264
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 20/202 (9%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ E DYY NI ++ S +E LAN ++ + +++ G++ + + ++ L DP+
Sbjct: 27 QVKRETDYYVRNIASVQSVDEFLANDKLYRYAMQAHGLEDMIYAKGMMRKV----LLDPR 82
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+A+ D RY++ ++FNF+++GE + Q N T + Y Q +E + + +
Sbjct: 83 -YASQLSDQRYQQFAAAFNFNLYGEKA------TQQNSAQTATVNKYMQQTLEVQVGQDN 135
Query: 619 PNIALALYFKRTIPNIRN---------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKI 669
LALYF RT+ + Y+ILGD L VV L + + +
Sbjct: 136 EGARLALYFTRTVGGMARDGLLSEKNWAYQILGDKALSAVVFTALDIPENVRLSKIEAQK 195
Query: 670 RILKKHIKINDFKDSKKVEDFL 691
+L+ + + D KD K++E F+
Sbjct: 196 SLLESRMSLKDLKDPKRLEHFI 217
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + + D K + K+P V E YY I + ++DEF+ + +L+ YA++
Sbjct: 1 MIGTYTSYRSTIDNMKKTLDRLLKEPQVKRETDYYVRNIASVQSVDEFLANDKLYRYAMQ 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A GL DM +A+ ++K+ L DP+ +QL+ +YQ FA +++F+ K Q +
Sbjct: 61 AHGLEDMIYAKGMMRKV----LLDPR-YASQLSDQRYQQFAAAFNFNLYGEKATQQNSAQ 115
Query: 120 KTIIQDYKQ 128
+ Y Q
Sbjct: 116 TATVNKYMQ 124
>gi|114706759|ref|ZP_01439659.1| hypothetical protein FP2506_18124 [Fulvimarina pelagi HTCC2506]
gi|114537707|gb|EAU40831.1| hypothetical protein FP2506_18124 [Fulvimarina pelagi HTCC2506]
Length = 260
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
S+D+ + L T ++DP V + Y E I IS+IDEF+ + R++ YA+KA GL DM++A
Sbjct: 12 SRDLPASLERT-AQDPTVERASQRYLEEIGKISSIDEFLANDRVYRYAMKAMGLEDMTYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKV------IQSDIQHKTIIQ 124
+ F++K++E + D ++ N+L +Y+ FA +++F+ + Q I K + Q
Sbjct: 71 KAFMRKVMEEGIDDREAFANKLTDSRYKDFAETFNFNRYGEAALAFERTQQGIVDKYVRQ 130
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+++ + E A + YF + + S L D +L + +FSI + +L
Sbjct: 131 TLEENTGTESEGA-RLALYFERKASTVTSYYGLLADPAILKVMQTAFSIPAETGTL 185
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 7/186 (3%)
Query: 507 YTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKD 566
Y I I S +E LAN R+ + +++ G++ + F+ ++ + + D ++FAN D
Sbjct: 35 YLEEIGKISSIDEFLANDRVYRYAMKAMGLEDMTYAKAFMRKVMEEGIDDREAFANKLTD 94
Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626
+RYK+ +FNF+ +GE + + Q D Y Q +E+ + LALY
Sbjct: 95 SRYKDFAETFNFNRYGE-AALAFERTQQGI-----VDKYVRQTLEENTGTESEGARLALY 148
Query: 627 FKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI-KINDFKDSK 685
F+R + ++Y +L D + KV+ + L K+ + +K + I D KD +
Sbjct: 149 FERKASTVTSYYGLLADPAILKVMQTAFSIPAETGTLDIDKQADLFRKALPNIEDLKDPQ 208
Query: 686 KVEDFL 691
KV + L
Sbjct: 209 KVSELL 214
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 141 SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIE 200
S+ + + I KI+S+D+ + R+ Y +++ + + F++ V+ G+ + + + +
Sbjct: 32 SQRYLEEIGKISSIDEFLANDRVYRYAMKAMGLEDMTYAKAFMRKVMEEGIDDREAFANK 91
Query: 201 SRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN----- 255
D+R++ AE F F G + + + + IV Y T++ +
Sbjct: 92 LTDSRYKDFAETFNFNRYGEAA----LAFERTQQGIVDKYVRQTLEENTGTESEGARLAL 147
Query: 256 YYKLAINSVSSFSDFLKDPKLFKMLQLS 283
Y++ ++V+S+ L DP + K++Q +
Sbjct: 148 YFERKASTVTSYYGLLADPAILKVMQTA 175
>gi|319409193|emb|CBI82837.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 266
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 483 SFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVR 542
+ ++M+Q S+Q ++ E DYY +I I S ++ LA+ RI + +++ G++
Sbjct: 11 TIDNMKQTSSQLFNEPQVKRETDYYVSHIIGIRSVDDFLADDRIYRYAMKAYGLEDMIYA 70
Query: 543 EDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTC 602
+ + ++ L DP +A+ D RY++ ++FNF ++GE + Q T
Sbjct: 71 KGMMRKV----LSDP-DYASQLTDRRYQQFAAAFNFSVYGEEA------TQRESAKTGTV 119
Query: 603 DLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNH---------YEILGDSKLFKVVSKK 653
+ Y Q +E K E++ LALYF RTI + Y+ILGD L VV
Sbjct: 120 NKYMQQTLEIKVGEENEGTRLALYFTRTIGEMTKSGVLSEKSWAYQILGDKALSAVVFTA 179
Query: 654 LKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
L + + +L+ + + D +D KK+E F+ AM
Sbjct: 180 LNIPESVRSSKIEAQKSLLESRMSLGDLEDPKKLEQFIARFSAM 223
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 30/231 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++++ + D + S + +P V E YY I I ++D+F+ D R++ YA+K
Sbjct: 1 MISTYMSYRSTIDNMKQTSSQLFNEPQVKRETDYYVSHIIGIRSVDDFLADDRIYRYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL DM +A+ ++K+ LSDP +QL +YQ FA +++FS + Q +
Sbjct: 61 AYGLEDMIYAKGMMRKV----LSDP-DYASQLTDRRYQQFAAAFNFSVYGEEATQRESAK 115
Query: 120 KTIIQDYKQSHQH----KEEVALEESKYFRKNIHKINSVD---------QLFKDRRLLDY 166
+ Y Q +E + YF + I ++ Q+ D+ L
Sbjct: 116 TGTVNKYMQQTLEIKVGEENEGTRLALYFTRTIGEMTKSGVLSEKSWAYQILGDKALSAV 175
Query: 167 VLQSFSITPKYISL-------PFLKDVLTLG-LANPKKYFIESRDNRFRAM 209
V + +I P+ + L+ ++LG L +PKK +E RF AM
Sbjct: 176 VFTALNI-PESVRSSKIEAQKSLLESRMSLGDLEDPKK--LEQFIARFSAM 223
>gi|163850120|ref|YP_001638163.1| hypothetical protein Mext_0680 [Methylobacterium extorquens PA1]
gi|163661725|gb|ABY29092.1| protein of unknown function DUF1217 [Methylobacterium extorquens
PA1]
Length = 417
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+KD+ + L S + +P+V+ E YY I + T+D+ + D+RL++YA+KA+GL DM++A
Sbjct: 12 AKDLPASL-SRKAAEPMVARETAYYEAHIGRVKTVDDLLGDQRLYAYAMKAYGLEDMTYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSD 116
+ F++K+LE + S N+L +Y FA+++ F +D
Sbjct: 71 KAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVTATGAD 116
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKL-SPYFAVL 663
Y Q +E + + D + LALYF R I + Y+ILGD+ L +V + + L + A
Sbjct: 285 YLRQSLESEAGDADTGVRLALYFARKASTIASAYDILGDAALSQVANTVIGLPATSGAAT 344
Query: 664 PE--RKKIRILKKHIKINDFKDSKKVEDFL 691
E K+ +++ I I F+D K++ F+
Sbjct: 345 SEALAKRAQLIAGKIDIASFRDPAKLDAFV 374
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
S + E + E+ Y+ +I ++ +VD L D+RL Y ++++ + + F++ VL
Sbjct: 20 SRKAAEPMVARETAYYEAHIGRVKTVDDLLGDQRLYAYAMKAYGLEDMTYAKAFMRKVLE 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRF 215
G A+ + D+R+ A A+ F F
Sbjct: 80 EGAASAASFANRLADDRYTAFAKAFSF 106
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY +I + + ++LL ++R+ + +++ G++ + F+ ++ + S
Sbjct: 28 VARETAYYEAHIGRVKTVDDLLGDQRLYAYAMKAYGLEDMTYAKAFMRKVLEEGAASAAS 87
Query: 560 FANTYKDNRYKEIISSFNF 578
FAN D+RY +F+F
Sbjct: 88 FANRLADDRYTAFAKAFSF 106
>gi|325291946|ref|YP_004277810.1| hypothetical protein AGROH133_03954 [Agrobacterium sp. H13-3]
gi|325059799|gb|ADY63490.1| hypothetical protein AGROH133_03954 [Agrobacterium sp. H13-3]
Length = 259
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
S+DI K VSK P V+ E YYR +I + ++D+F+ D RL++YALKA GL DM++A
Sbjct: 12 SQDI-GKSLERVSKQPDVARETEYYRSKIGSVKSVDDFMADTRLYNYALKANGLEDMAYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFS 107
+ FI+K+L +D + N+L+ +Y A+S DF+
Sbjct: 71 KAFIRKVLTEGTADKNAFANKLSDSRYSDLAKSLDFA 107
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 10/206 (4%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
S+E++S Q ++ E +YY I ++ S ++ +A+ R+ N+ L++ G++ + F
Sbjct: 18 SLERVSKQP----DVARETEYYRSKIGSVKSVDDFMADTRLYNYALKANGLEDMAYAKAF 73
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ D +FAN D+RY ++ S +F G + Q Y
Sbjct: 74 IRKVLTEGTADKNAFANKLSDSRYSDLAKSLDFASLGAAATATE-AAQSGI-----ISKY 127
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
Q +E++ + + LALYF+R P I++ + L D L +V L A
Sbjct: 128 TRQTLEQEAGGDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTAYNLPDEIAAGSV 187
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFL 691
K+ +++K I I D ++ +KV L
Sbjct: 188 EKQAALIEKSINIKDLQNPEKVGKLL 213
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 14/183 (7%)
Query: 119 HKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ I QD +S + K+ E++Y+R I + SVD D RL +Y L++ +
Sbjct: 8 YRLISQDIGKSLERVSKQPDVARETEYYRSKIGSVKSVDDFMADTRLYNYALKANGLEDM 67
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKI 236
+ F++ VLT G A+ + + D+R+ +A++ F SL Q I
Sbjct: 68 AYAKAFIRKVLTEGTADKNAFANKLSDSRYSDLAKSLDF---ASLGAAATATEAAQ-SGI 123
Query: 237 VSNYFNNTIDCVPIVSDQNYYKLAIN------SVSSFSDFLKDPKLFKMLQLSLFPLNPE 290
+S Y T++ D N +LA+ ++ S DFL D L ++ + + + L E
Sbjct: 124 ISKYTRQTLEQ-EAGGDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTA-YNLPDE 181
Query: 291 ITA 293
I A
Sbjct: 182 IAA 184
>gi|254559265|ref|YP_003066360.1| hypothetical protein METDI0661 [Methylobacterium extorquens DM4]
gi|254266543|emb|CAX22307.1| hypothetical protein METDI0661 [Methylobacterium extorquens DM4]
Length = 417
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+KD+ + L S + +P+V+ E YY I + T+D+ + D+RL++YA+KA+GL +M++A
Sbjct: 12 AKDLPASL-SRKAAEPMVARETAYYEAHIGQVKTVDDLLGDQRLYAYAMKAYGLEEMTYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSD 116
+ F++K+LE + S N+L +Y FA+++ F +D
Sbjct: 71 KAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVTATGAD 116
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/366 (21%), Positives = 134/366 (36%), Gaps = 60/366 (16%)
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
Y+ +G++K++D+LL G +L +A+ AY L + +R VL
Sbjct: 35 YEAHIGQVKTVDDLL-GDQRL------------YAYAMKAYGLEEMTYAKAFMRKVLEEG 81
Query: 420 PSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDA 479
+ S+AN+ DDR AF+F Q + + + R+ +
Sbjct: 82 AASAASFANRLADDRYTAFAKAFSFG-----------QGVTATGADPARFGEQARAASLS 130
Query: 480 ENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILN----------- 528
K S + + + S +D T TI + LA R+ N
Sbjct: 131 APKLLADSYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAG-RVANPAKVTPAEIAA 189
Query: 529 ------FLLESKGIDSQKVRED---FLCEIFKSDLKDPKSFANT--YKDNRYKEIISSFN 577
KG + D F +DL ++ T Y D S+
Sbjct: 190 AVAAQIEASALKGKVQAGLAADGSLFFETTALTDLGADGAYGGTGLYADTLVNAGGSNRT 249
Query: 578 FDI-HGELSHKKIGKVQDNFHID--------DTCDLYKHQMIEKKEEEKDPNIALALYFK 628
I + LS + V F D Y Q +E + + D + LALYF
Sbjct: 250 LTIRNAALSANRT-AVDVGFGTDLGPDSMAQTVTQAYLRQSLESEAGDADTGVRLALYFA 308
Query: 629 RTIPNIRNHYEILGDSKLFKVVSKKLKL-SPYFAVLPE--RKKIRILKKHIKINDFKDSK 685
R + + Y+ILGD+ L +V + + L + A E K+ +++ I I F+D
Sbjct: 309 RKASTLTSAYDILGDAALSQVANTVIGLPATSGAATSEALAKRAQLIAGKIDIASFRDPA 368
Query: 686 KVEDFL 691
K++ F+
Sbjct: 369 KLDAFV 374
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
S + E + E+ Y+ +I ++ +VD L D+RL Y ++++ + + F++ VL
Sbjct: 20 SRKAAEPMVARETAYYEAHIGQVKTVDDLLGDQRLYAYAMKAYGLEEMTYAKAFMRKVLE 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRF 215
G A+ + D+R+ A A+ F F
Sbjct: 80 EGAASAASFANRLADDRYTAFAKAFSF 106
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 41/80 (51%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY +I + + ++LL ++R+ + +++ G++ + F+ ++ + S
Sbjct: 28 VARETAYYEAHIGQVKTVDDLLGDQRLYAYAMKAYGLEEMTYAKAFMRKVLEEGAASAAS 87
Query: 560 FANTYKDNRYKEIISSFNFD 579
FAN D+RY +F+F
Sbjct: 88 FANRLADDRYTAFAKAFSFG 107
>gi|23011439|ref|ZP_00051796.1| hypothetical protein Magn03006068 [Magnetospirillum magnetotacticum
MS-1]
Length = 325
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 56/85 (65%)
Query: 23 SKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDL 82
+ DP+V+ E YY I + ++D+ + D+RL++YA+KA+GL +M++A+ F++K+LE
Sbjct: 23 AADPVVARETAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEEMTYAKAFMRKVLEEGA 82
Query: 83 SDPKSLVNQLNSLKYQYFARSYDFS 107
+ S N+L +Y FAR++ F
Sbjct: 83 ASSASFANRLADDRYTAFARAFTFG 107
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 119 HKTIIQDYKQSHQHKEE--VALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ I +D S + K V E+ Y+ +I ++ SVD L D+RL Y ++++ +
Sbjct: 8 YRLIAKDLTASLKRKAADPVVARETAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEEM 67
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRF 215
+ F++ VL G A+ + D+R+ A A F F
Sbjct: 68 TYAKAFMRKVLEEGAASSASFANRLADDRYTAFARAFTF 106
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 40/79 (50%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY +I + S ++LL ++R+ + +++ G++ + F+ ++ + S
Sbjct: 28 VARETAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEEMTYAKAFMRKVLEEGAASSAS 87
Query: 560 FANTYKDNRYKEIISSFNF 578
FAN D+RY +F F
Sbjct: 88 FANRLADDRYTAFARAFTF 106
>gi|288962700|ref|YP_003452994.1| flagellar basal-body rod protein [Azospirillum sp. B510]
gi|288914966|dbj|BAI76450.1| flagellar basal-body rod protein [Azospirillum sp. B510]
Length = 263
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ + Y+ NI I S E+ + + ++ F+L++ + SQ + ++ + + D S
Sbjct: 27 VQRAISYFQDNIGKITSTEDFMKDDKLYRFVLDAFDLGSQARSRGLIRKVLEEGVGDKSS 86
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D++++E+ + F + + KK VQ D Y +E + E+++P
Sbjct: 87 TANRMSDSKFREMATILGFAENQGDNLKKPAVVQA------IIDRYVAVTLEVESEDRNP 140
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ L LYF+R NI N Y+++ D+ L KVV L L A+L K+ +L+K + I
Sbjct: 141 AVRLGLYFQRRSANISNWYQVMADNALRKVVYTALGLPEQTALLDVDKQKALLEKRMDIA 200
Query: 680 DFKDSKKVEDFLYAAKAM 697
D K KV L AM
Sbjct: 201 DLKKPDKVAKLLDRFAAM 218
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 10/167 (5%)
Query: 21 TVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILES 80
V P V Y+++ I I++ ++F+KD +L+ + L AF L + + I+K+LE
Sbjct: 20 AVRSRPAVQRAISYFQDNIGKITSTEDFMKDDKLYRFVLDAFDLGSQARSRGLIRKVLEE 79
Query: 81 DLSDPKSLVNQLNSLKYQYFARSYDFSP-------PPKVIQSDIQHKTIIQDYKQSHQHK 133
+ D S N+++ K++ A F+ P V+Q+ I + +S
Sbjct: 80 GVGDKSSTANRMSDSKFREMATILGFAENQGDNLKKPAVVQAIIDRYVAVTLEVESEDRN 139
Query: 134 EEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
V L YF++ I++ Q+ D L V + + P+ +L
Sbjct: 140 PAVRL--GLYFQRRSANISNWYQVMADNALRKVVYTALGL-PEQTAL 183
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 12/173 (6%)
Query: 126 YKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKD 185
Y Q+ + + V S YF+ NI KI S + KD +L +VL +F + + S ++
Sbjct: 17 YDQAVRSRPAVQRAIS-YFQDNIGKITSTEDFMKDDKLYRFVLDAFDLGSQARSRGLIRK 75
Query: 186 VLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI 245
VL G+ + D++FR MA F + + D + ++ I+ Y T+
Sbjct: 76 VLEEGVGDKSSTANRMSDSKFREMATILGFAEN----QGDNLKKPAVVQAIIDRYVAVTL 131
Query: 246 -----DCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITA 293
D P V Y++ ++S++ + D L K++ +L PE TA
Sbjct: 132 EVESEDRNPAVRLGLYFQRRSANISNWYQVMADNALRKVVYTALGL--PEQTA 182
>gi|218528724|ref|YP_002419540.1| hypothetical protein Mchl_0691 [Methylobacterium chloromethanicum
CM4]
gi|218521027|gb|ACK81612.1| protein of unknown function DUF1217 [Methylobacterium
chloromethanicum CM4]
Length = 417
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+KD+ + L S + +P V+ E YY I + ++D+ + D+RL++YA+KA+GL DM++A
Sbjct: 12 AKDLPASL-SRKAAEPTVARETAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEDMTYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSD 116
+ F++K+LE + S N+L +Y FA+++ F +D
Sbjct: 71 KAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVTATGAD 116
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 82/366 (22%), Positives = 134/366 (36%), Gaps = 60/366 (16%)
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
Y+ +G++KS+D+LL G +L +A+ AY L + +R VL
Sbjct: 35 YEAHIGQVKSVDDLL-GDQRL------------YAYAMKAYGLEDMTYAKAFMRKVLEEG 81
Query: 420 PSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDA 479
+ S+AN+ DDR AF+F Q + + + R+ +
Sbjct: 82 AASAASFANRLADDRYTAFAKAFSFG-----------QGVTATGADPARFGEQARAASLS 130
Query: 480 ENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILN----------- 528
K S + + + S +D T TI + LA R+ N
Sbjct: 131 APKLLADSYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAG-RVANPAKVTPAEIAA 189
Query: 529 ------FLLESKGIDSQKVRED---FLCEIFKSDLKDPKSFANT--YKDNRYKEIISSFN 577
KG + D F +DL ++ T Y D S+
Sbjct: 190 AVAAQIEASALKGKVQAGLAADGSLFFETTALTDLGADGAYGGTGLYADTLVNAGGSNRT 249
Query: 578 FDI-HGELSHKKIGKVQDNFHID--------DTCDLYKHQMIEKKEEEKDPNIALALYFK 628
I + LS + V F D Y Q +E + + D + LALYF
Sbjct: 250 LTIRNAALSANRT-AVDVGFGTDLGPDSMAQTVTQAYLRQSLESEAGDADTGVRLALYFA 308
Query: 629 RTIPNIRNHYEILGDSKLFKVVSKKLKL-SPYFAVLPE--RKKIRILKKHIKINDFKDSK 685
R I + Y+ILGD+ L +V + + L + A E K+ +++ I I F+D
Sbjct: 309 RKASTIASAYDILGDAALSQVANTVIGLPATSGAATSEALAKRAQLIAGKIDIASFRDPA 368
Query: 686 KVEDFL 691
K++ F+
Sbjct: 369 KLDAFV 374
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
S + E E+ Y+ +I ++ SVD L D+RL Y ++++ + + F++ VL
Sbjct: 20 SRKAAEPTVARETAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEDMTYAKAFMRKVLE 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRF 215
G A+ + D+R+ A A+ F F
Sbjct: 80 EGAASAASFANRLADDRYTAFAKAFSF 106
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY +I + S ++LL ++R+ + +++ G++ + F+ ++ + S
Sbjct: 28 VARETAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEDMTYAKAFMRKVLEEGAASAAS 87
Query: 560 FANTYKDNRYKEIISSFNF 578
FAN D+RY +F+F
Sbjct: 88 FANRLADDRYTAFAKAFSF 106
>gi|158422870|ref|YP_001524162.1| hypothetical protein AZC_1246 [Azorhizobium caulinodans ORS 571]
gi|158329759|dbj|BAF87244.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
Length = 303
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 92/193 (47%), Gaps = 8/193 (4%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ +++ Y+ NI + + +E + N R+ NF + + G+ + ++ ++ SDL D S
Sbjct: 71 VKNDIAYFRANITKVKTVDEFVGNYRLFNFAMNAFGLSEMANAKAYMKKVLNSDLSDSSS 130
Query: 560 FANTYKDNRYKEIISSF-NFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
F N D+++K +F N + L+ DD Y +Q IE + + D
Sbjct: 131 FVNKLADDKFKVFARAFSNLNPTNALTTVPA-------TADDVVGYYLNQSIETELGQTD 183
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKI 678
+ LALYFKR I++ Y ILGD L+KVV L + ++ RI+ + +
Sbjct: 184 QGVQLALYFKRNAATIKSAYSILGDPALYKVVKTVFNLPDNMGKVDIAQQKRIVDAKLNV 243
Query: 679 NDFKDSKKVEDFL 691
ND +D KV L
Sbjct: 244 NDLQDPTKVNKLL 256
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 5/158 (3%)
Query: 21 TVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILES 80
T + +PIV + Y+R I + T+DEF+ + RLF++A+ AFGLS+M++A+ ++KK+L S
Sbjct: 64 TKAAEPIVKNDIAYFRANITKVKTVDEFVGNYRLFNFAMNAFGLSEMANAKAYMKKVLNS 123
Query: 81 DLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEV---- 136
DLSD S VN+L K++ FAR++ P + + + Y + + E+
Sbjct: 124 DLSDSSSFVNKLADDKFKVFARAFSNLNPTNALTTVPATADDVVGYYLNQSIETELGQTD 183
Query: 137 -ALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSI 173
++ + YF++N I S + D L V F++
Sbjct: 184 QGVQLALYFKRNAATIKSAYSILGDPALYKVVKTVFNL 221
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLG 190
+ E + + YFR NI K+ +VD+ + RL ++ + +F ++ + ++K VL
Sbjct: 65 KAAEPIVKNDIAYFRANITKVKTVDEFVGNYRLFNFAMNAFGLSEMANAKAYMKKVLNSD 124
Query: 191 LANPKKYFIESRDNRFRAMAENF-RFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVP 249
L++ + + D++F+ A F P +L+ D +V Y N +I+
Sbjct: 125 LSDSSSFVNKLADDKFKVFARAFSNLNPTNALTTVPATADD-----VVGYYLNQSIETEL 179
Query: 250 IVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQ 281
+DQ Y+K ++ S L DP L+K+++
Sbjct: 180 GQTDQGVQLALYFKRNAATIKSAYSILGDPALYKVVK 216
>gi|188579922|ref|YP_001923367.1| hypothetical protein Mpop_0654 [Methylobacterium populi BJ001]
gi|179343420|gb|ACB78832.1| protein of unknown function DUF1217 [Methylobacterium populi BJ001]
Length = 417
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+KD+ + L + + +P V+ E YY I + T+D+ + D+RL++YA+KA+GL +M++A
Sbjct: 12 AKDLPASL-ARKAAEPTVARETAYYEAHIGQVKTVDDLLGDQRLYAYAMKAYGLEEMTYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSD 116
+ F++K+LE + S N+L +Y FA+++ F +D
Sbjct: 71 KAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVSATGAD 116
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/371 (22%), Positives = 140/371 (37%), Gaps = 70/371 (18%)
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
Y+ +G++K++D+LL G +L +A+ AY L + +R VL
Sbjct: 35 YEAHIGQVKTVDDLL-GDQRL------------YAYAMKAYGLEEMTYAKAFMRKVLEEG 81
Query: 420 PSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDA 479
+ S+AN+ DDR AF+F Q + + R R+ +
Sbjct: 82 AASAASFANRLADDRYTAFAKAFSFG-----------QGVSATGADAARFGERARAATLS 130
Query: 480 ENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQ 539
K S + + + S +D T TI + LA R+ + SK +
Sbjct: 131 APKLLADAYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAG-RVQDL---SK-VTPS 185
Query: 540 KVREDFLCEIFKSDLK---------------DPKSFANTYKDNRYKEIISSFNFDI---- 580
++ +I SDLK + + + D Y S N D
Sbjct: 186 EIATAVAAQIEGSDLKGKVQAGLAADGSLFFETTALTDLGADGAYGG--SGLNADTLVSA 243
Query: 581 HGELSHKKIGKV---QDNFHID---------DTCDL-----YKHQMIEKKEEEKDPNIAL 623
G + I V D +D DT L Y Q +E + D + L
Sbjct: 244 GGAIRTLAIRNVPLSADRTAVDVGFGTDLGPDTMALTVTQAYLRQSLESDAGDTDTGVRL 303
Query: 624 ALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKL-SPYFAVLPE--RKKIRILKKHIKIND 680
ALYF R P++ + Y+ILGD+ L +V + + L + A E K+ +++ I I
Sbjct: 304 ALYFARKGPSLSSAYDILGDAALSQVANTVIGLPATSGAATSEALAKRAQLIADKIDIAG 363
Query: 681 FKDSKKVEDFL 691
+D K++ FL
Sbjct: 364 LRDPAKLDAFL 374
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 119 HKTIIQDYKQSHQHK--EEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ I +D S K E E+ Y+ +I ++ +VD L D+RL Y ++++ +
Sbjct: 8 YRLIAKDLPASLARKAAEPTVARETAYYEAHIGQVKTVDDLLGDQRLYAYAMKAYGLEEM 67
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDK 226
+ F++ VL G A+ + D+R+ A A+ F F S + D
Sbjct: 68 TYAKAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVSATGADA 117
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E YY +I + + ++LL ++R+ + +++ G++ + F+ ++ + S
Sbjct: 28 VARETAYYEAHIGQVKTVDDLLGDQRLYAYAMKAYGLEEMTYAKAFMRKVLEEGAASAAS 87
Query: 560 FANTYKDNRYKEIISSFNF 578
FAN D+RY +F+F
Sbjct: 88 FANRLADDRYTAFAKAFSF 106
>gi|240137254|ref|YP_002961723.1| hypothetical protein MexAM1_META1p0505 [Methylobacterium extorquens
AM1]
gi|240007220|gb|ACS38446.1| hypothetical protein MexAM1_META1p0505 [Methylobacterium extorquens
AM1]
Length = 417
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+KD+ + L S + +P V+ E YY I + ++D+ + D+RL++YA+KA+GL DM++A
Sbjct: 12 AKDLPASL-SRKAAEPTVAREIAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEDMTYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSD 116
+ F++K+LE + S N+L +Y FA+++ F +D
Sbjct: 71 KAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVTATGAD 116
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKL-SPYFAVL 663
Y Q +E + + D + LALYF R +I + Y+ILGD+ L +V + + L + A
Sbjct: 285 YLRQSLESEAGDADTGVRLALYFARKASSIASAYDILGDAALSQVANTVIGLPATSGAAT 344
Query: 664 PE--RKKIRILKKHIKINDFKDSKKVEDFL 691
E K+ +++ + I I F+D K++ F+
Sbjct: 345 SEALAKRAQLIDRKIDIASFRDPAKLDAFV 374
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
S + E E Y+ +I ++ SVD L D+RL Y ++++ + + F++ VL
Sbjct: 20 SRKAAEPTVAREIAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEDMTYAKAFMRKVLE 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRF 215
G A+ + D+R+ A A+ F F
Sbjct: 80 EGAASAASFANRLADDRYTAFAKAFSF 106
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 42/79 (53%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ E+ YY +I + S ++LL ++R+ + +++ G++ + F+ ++ + S
Sbjct: 28 VAREIAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEDMTYAKAFMRKVLEEGAASAAS 87
Query: 560 FANTYKDNRYKEIISSFNF 578
FAN D+RY +F+F
Sbjct: 88 FANRLADDRYTAFAKAFSF 106
>gi|209963548|ref|YP_002296463.1| hypothetical protein RC1_0201 [Rhodospirillum centenum SW]
gi|209957014|gb|ACI97650.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 508
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 55/83 (66%)
Query: 25 DPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSD 84
DP+ + +Y R ++ + T+DE + D+RL+SY ++AFGL D +++ ++KIL SDLSD
Sbjct: 39 DPVNKADTQYARAKLASVGTVDELMSDRRLYSYVMRAFGLEDQINSQALVRKILTSDLSD 98
Query: 85 PKSLVNQLNSLKYQYFARSYDFS 107
P S N++ +++ A +++F
Sbjct: 99 PSSAANRIADPRFRELAAAFNFG 121
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Query: 502 SEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFA 561
++ Y + ++ + +EL++++R+ ++++ + G++ Q + + +I SDL DP S A
Sbjct: 44 ADTQYARAKLASVGTVDELMSDRRLYSYVMRAFGLEDQINSQALVRKILTSDLSDPSSAA 103
Query: 562 NTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNI 621
N D R++E+ ++FNF + K I+ DLY + E+ K+ ++
Sbjct: 104 NRIADPRFRELAAAFNFG-----ADSKSKSKTSPSFINQIADLYVRERYEESVSSKNESL 158
Query: 622 ALALYFKRTIPNIRNHYEILGDSKLFKVV 650
+ L F R +P R+ E++ D + +VV
Sbjct: 159 GMMLDFTRNLPTKRSWAEVMADEGMAQVV 187
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 88/197 (44%), Gaps = 11/197 (5%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ S+V T I T+ S ++LL ++++L +L++ ++ + + +L ++ +SD
Sbjct: 272 DVKSDVAALTKTIPTLDSVDDLLNDRKLLPIVLKAFDLEDKATDKTYLRKVLESDPNSAT 331
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
SFA K + +F G K+ G ++D + Y Q E +
Sbjct: 332 SFAAKAGPEE-KALALAFGMTNSG---AKRRGSPA---FVEDIVNRYTTQSFEVSAGNAN 384
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKI 678
+ L LYF+R + + Y++L D L KV L L A + +++ +L + I
Sbjct: 385 EALRLGLYFQRKAGGLTSWYQVLADQALAKVARLALNLPSQSAQIDLDRQVDMLSSKLDI 444
Query: 679 NDFKD----SKKVEDFL 691
+D K +E FL
Sbjct: 445 KKLQDPAEVGKLIEKFL 461
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 152/347 (43%), Gaps = 43/347 (12%)
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
D +++ + V +++Y R + + +VD+L DRRL YV+++F + + S ++
Sbjct: 30 DRQKTVMMSDPVNKADTQYARAKLASVGTVDELMSDRRLYSYVMRAFGLEDQINSQALVR 89
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKI-----LTDMQIEKIVSN 239
+LT L++P D RFR +A F F D + + D+ + +
Sbjct: 90 KILTSDLSDPSSAANRIADPRFRELAAAFNFGADSKSKSKTSPSFINQIADLYVRERYEE 149
Query: 240 YFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF----PLNPEITADK 295
++ + + ++ D + + + S+++ + D + +++++ ++ P+ P A++
Sbjct: 150 SVSSKNESLGMMLD---FTRNLPTKRSWAEVMADEGMAQVVRI-IYDLPKPIGPVDAAEQ 205
Query: 296 FLTLMQEND----PIVSQVKYFFQINFH---------RDNSSSTKIQQDSQIQKMLDLYK 342
+L V+ V+ F+ +F R +S +K+Q + + + D K
Sbjct: 206 AKSLEATIKFSVFTTVTSVQSAFRDDFFDVWDANGNPRGSSIPSKVQWE-MLARSYDREK 264
Query: 343 KNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNL 402
+D K +P + S+D+LL+ + L PI+ L A++L
Sbjct: 265 AAFATRYDVKSDVAALTKTIP--TLDSVDDLLNDRKLL--------PIV-----LKAFDL 309
Query: 403 NMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS 449
+ D+ LR VL S+P+ S+A K+ + L AF G+
Sbjct: 310 EDKATDKTYLRKVLESDPNSATSFAAKAGPEE-KALALAFGMTNSGA 355
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 39 IKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN----- 93
I + ++D+ + D++L LKAF L D + + +++K+LESD + S +
Sbjct: 284 IPTLDSVDDLLNDRKLLPIVLKAFDLEDKATDKTYLRKVLESDPNSATSFAAKAGPEEKA 343
Query: 94 -SLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKIN 152
+L + P ++ DI ++ Q ++ S + E AL YF++ +
Sbjct: 344 LALAFGMTNSGAKRRGSPAFVE-DIVNRYTTQSFEVSAGNANE-ALRLGLYFQRKAGGLT 401
Query: 153 SVDQLFKDRRL 163
S Q+ D+ L
Sbjct: 402 SWYQVLADQAL 412
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 30/195 (15%)
Query: 95 LKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSV 154
++++ ARSYD + D+ K +VA K I ++SV
Sbjct: 251 VQWEMLARSYDREKAAFATRYDV---------------KSDVA-----ALTKTIPTLDSV 290
Query: 155 DQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFR 214
D L DR+LL VL++F + K +L+ VL N F +A+A F
Sbjct: 291 DDLLNDRKLLPIVLKAFDLEDKATDKTYLRKVLESD-PNSATSFAAKAGPEEKALALAFG 349
Query: 215 FQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSD 269
G+ + +E IV+ Y + + +++ Y++ ++S+
Sbjct: 350 MTNSGAKRRGSPAF----VEDIVNRYTTQSFEVSAGNANEALRLGLYFQRKAGGLTSWYQ 405
Query: 270 FLKDPKLFKMLQLSL 284
L D L K+ +L+L
Sbjct: 406 VLADQALAKVARLAL 420
>gi|170744540|ref|YP_001773195.1| hypothetical protein M446_6503 [Methylobacterium sp. 4-46]
gi|168198814|gb|ACA20761.1| protein of unknown function DUF1217 [Methylobacterium sp. 4-46]
Length = 414
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 52/75 (69%)
Query: 23 SKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDL 82
+ DP+V+ + YY I + ++D+ + D+RL++YA+KA+GL DM++A+ F++K+LE +
Sbjct: 23 AADPVVARDTAYYEANIGKVKSVDDLMADQRLYAYAMKAYGLEDMTYAKAFMRKVLEGGV 82
Query: 83 SDPKSLVNQLNSLKY 97
+D S N+L +Y
Sbjct: 83 ADASSFANRLADPRY 97
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 139/361 (38%), Gaps = 53/361 (14%)
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
Y+ +GK+KS+D+L+ A++ + +A+ AY L + +R VL
Sbjct: 35 YEANIGKVKSVDDLM-----------ADQRL--YAYAMKAYGLEDMTYAKAFMRKVLEGG 81
Query: 420 PSDPDSYANKSKDDRLIKLNHAFN--------------FNADGSIGPIPM-MQSRLTIRD 464
+D S+AN+ D R + AF+ + G + P P + + + D
Sbjct: 82 VADASSFANRLADPRYVAFARAFDFAAGAASASGADGSISESGVVPPQPAQLTAPAALPD 141
Query: 465 NVK-HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLAN 523
+ AN R + S +T + + + +N+ + T + E++A
Sbjct: 142 STDFSGANEAR-------FTLTSRLDATTTRSVTITLNAATLAGSAADLTRVTGAEIVA- 193
Query: 524 KRILNFLLESKGIDSQKVREDFLCEI-----FKSDLKDPKSFANTYKDNRYKEIISSFNF 578
+N + + G D + R F++ P F + +S N
Sbjct: 194 --AINAQIAASGEDGLEDRVQVGLGARNELYFETTASAPDGFGTAVEAGGTGRTLSVENA 251
Query: 579 DIHGELSHKKIG-----KVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPN 633
K +G + + + D Y Q +E E+D + LALYF R P
Sbjct: 252 -APSAADRKAVGIGFGTALPPDAQVRTVTDAYLEQTLESDAGEEDTGLRLALYFARMAPT 310
Query: 634 IRNHYEILGDSKLFKVVSKKLKL-SPYFAVLPERKKIRI--LKKHIKINDFKDSKKVEDF 690
+ + Y+ILGD+ L KV + L + A E R L I I F+D KV+ F
Sbjct: 311 LTSAYDILGDAALSKVANTVAGLPATSGAATSEALDARAAFLAAKIDIAGFQDPAKVQAF 370
Query: 691 L 691
+
Sbjct: 371 V 371
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ + YY NI + S ++L+A++R+ + +++ G++ + F+ ++ + + D S
Sbjct: 28 VARDTAYYEANIGKVKSVDDLMADQRLYAYAMKAYGLEDMTYAKAFMRKVLEGGVADASS 87
Query: 560 FANTYKDNRY 569
FAN D RY
Sbjct: 88 FANRLADPRY 97
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 119 HKTIIQDYKQSHQHK--EEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ + +D ++ Q K + V ++ Y+ NI K+ SVD L D+RL Y ++++ +
Sbjct: 8 YQLVARDLPKALQRKAADPVVARDTAYYEANIGKVKSVDDLMADQRLYAYAMKAYGLEDM 67
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRF 206
+ F++ VL G+A+ + D R+
Sbjct: 68 TYAKAFMRKVLEGGVADASSFANRLADPRY 97
>gi|319406970|emb|CBI80607.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 266
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 20/208 (9%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ E DYY +I + S +E LAN +I N+ +++ G++ F + + L DP+
Sbjct: 27 QVKRETDYYVKHIIGVKSVDEFLANDKIYNYAMKAYGLEDM----IFAKGMIRKVLSDPE 82
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+A+ D RY++ +FNF +GE + Q T + Y Q +E + E +
Sbjct: 83 -YASQLVDKRYQQFAEAFNFSKYGEKA------TQRESAKTVTVNKYMQQTLEVEVGEVN 135
Query: 619 PNIALALYFKRTIPN-IRNH--------YEILGDSKLFKVVSKKLKLSPYFAVLPERKKI 669
LALYF RTI ++N+ Y+IL D L V+ K +S P +
Sbjct: 136 EGTRLALYFTRTIGGMVQNNVLTEKNWAYQILSDKALSAVIFKAFNISENVLTSPIEVQK 195
Query: 670 RILKKHIKINDFKDSKKVEDFLYAAKAM 697
+L+ + + D +D KK+E + AM
Sbjct: 196 SLLESRMSLKDLQDPKKLEHLIAKFSAM 223
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 28/230 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + + D + F + + P V E YY + I + ++DEF+ + ++++YA+K
Sbjct: 1 MISTYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDEFLANDKIYNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL DM A+ I+K+ LSDP+ +QL +YQ FA +++FS K Q +
Sbjct: 61 AYGLEDMIFAKGMIRKV----LSDPE-YASQLVDKRYQQFAEAFNFSKYGEKATQRESAK 115
Query: 120 KTIIQDYKQSHQHKEEVALEESK----YFRKNIHKI---------NSVDQLFKDRRLLDY 166
+ Y Q E + E YF + I + N Q+ D+ L
Sbjct: 116 TVTVNKYMQQTLEVEVGEVNEGTRLALYFTRTIGGMVQNNVLTEKNWAYQILSDKALSAV 175
Query: 167 VLQSFSITPKYISLP------FLKDVLTLG-LANPKKYFIESRDNRFRAM 209
+ ++F+I+ ++ P L+ ++L L +PKK +E +F AM
Sbjct: 176 IFKAFNISENVLTSPIEVQKSLLESRMSLKDLQDPKK--LEHLIAKFSAM 223
>gi|163740770|ref|ZP_02148163.1| hypothetical protein RG210_13056 [Phaeobacter gallaeciensis 2.10]
gi|161385761|gb|EDQ10137.1| hypothetical protein RG210_13056 [Phaeobacter gallaeciensis 2.10]
Length = 591
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 129/625 (20%), Positives = 236/625 (37%), Gaps = 123/625 (19%)
Query: 144 FRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRD 203
F + I I S DQL D +L L +F + + F+K VL L+ P + D
Sbjct: 42 FTQKIEGIQSSDQLLDDYNVLKVALGAFGLDEDINNRAFIKKVLDSDLSEPTSFANRLND 101
Query: 204 NRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINS 263
NR+ +A+ F F D L +EK +N
Sbjct: 102 NRYLGLAQTFGFGNDAG-----PQLPSSSVEKPYAN------------------------ 132
Query: 264 VSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNS 323
V+S D L + L L F L + FL + E+D D +
Sbjct: 133 VASPEDLLSNQTLLNQ-ALDDFGLEKYAGNEFFLMRVLESD--------------TTDPA 177
Query: 324 SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGP 383
S DS++ + ++ N + M++L+ G+ ++++ GP
Sbjct: 178 SFVNRLSDSKLADFANAFQFNQPPEYTSSMEALV-------GEFNAMNDG-------NGP 223
Query: 384 NSAEEPI---ITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNH 440
+A+E + L+ +D+++L + L+ +L SNP DPDS N+ +D R + ++
Sbjct: 224 ANADELLENEGLLKAVVDSFDLEYTNTIF--LKRMLESNPYDPDSPVNQQEDPRYLAMSR 281
Query: 441 AFNFNA---DGSIGPIPMMQSRLTIRDNVKHY------------------ANRKRSIHDA 479
AF F + P ++ + D ++ + ++ ++
Sbjct: 282 AFGFGISDINSFTSPEELLAQPQLLEDALEQFNLSNPGEQYIRDVLESDLSDPNSFVNQP 341
Query: 480 ENKSFNSM------EQISTQKRINL---EINSEVDYYTLNINTIHSFEELLANKRILNFL 530
N +F E S R+ + E+ ++ Y + F+ A + N
Sbjct: 342 SNLAFYDFAEAFQNEWPSAPSRMQVLADEVGGKLAGYEQPQQFVFDFDAFEAGLDVFN-- 399
Query: 531 LESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIG 590
I +++ D + + F+SDL S+AN ++D K + +F F+ G G
Sbjct: 400 -----ISERELDFDVMIKAFESDLSSEISYANLHRDPNLKAMAHAFAFNPGGSDHTYPAG 454
Query: 591 KVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILG 642
Q + DLYK + E E DPN+ LAL +R + +I + + I+G
Sbjct: 455 FAQ------EIADLYKDRNFEIAIGESDPNMRLALSLERELQSIADAGGSEDAHWFGIIG 508
Query: 643 DSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSI 702
L + L L F L +++ +K+ + + F + + A ++ +++
Sbjct: 509 SPPLKSMFETALGLPASFGQLDVDRQVNEMKERAQTS-FGTT-------HPADLLEPETL 560
Query: 703 D-YKKALFSSPNQNKDPWNNSFDDP 726
D ++ N D N F DP
Sbjct: 561 DAFRNRFLLLSGLNSDQAANGFSDP 585
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 100/461 (21%), Positives = 183/461 (39%), Gaps = 79/461 (17%)
Query: 24 KDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLS 83
K PI+ + + ++I+ I + D+ + D + AL AFGL + + FIKK+L+SDLS
Sbjct: 31 KSPILDRAVQDFTQKIEGIQSSDQLLDDYNVLKVALGAFGLDEDINNRAFIKKVLDSDLS 90
Query: 84 DPKSLVNQLNSLKYQYFARSYDFS--PPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEES 141
+P S N+LN +Y A+++ F P++ S ++
Sbjct: 91 EPTSFANRLNDNRYLGLAQTFGFGNDAGPQLPSSSVE----------------------- 127
Query: 142 KYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIES 201
K + S + L ++ LL+ L F + + FL VL +P +
Sbjct: 128 ----KPYANVASPEDLLSNQTLLNQALDDFGLEKYAGNEFFLMRVLESDTTDPASFVNRL 183
Query: 202 RDNRFRAMAENFRF-QPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLA 260
D++ A F+F QP S + ++ + N N + ++ ++ K
Sbjct: 184 SDSKLADFANAFQFNQPPEYTSSMEALVGEFN----AMNDGNGPANADELLENEGLLKAV 239
Query: 261 INSVS---SFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQIN 317
++S + + FLK +ML+ + P +P+ + Q+ DP + F
Sbjct: 240 VDSFDLEYTNTIFLK-----RMLESN--PYDPDSPVN------QQEDPRYLAMSRAFGFG 286
Query: 318 FHRDNSSSTKIQQDSQIQKMLD------LYKKNCQILHD--------------------- 350
NS ++ + +Q Q + D L Q + D
Sbjct: 287 ISDINSFTSPEELLAQPQLLEDALEQFNLSNPGEQYIRDVLESDLSDPNSFVNQPSNLAF 346
Query: 351 -DKMQSLIKDYQLPLGKIKSIDNLLSGK-CQLEGPNSAEEPIITLQFALDAYNLNMQDLD 408
D ++ ++ +++ + + + GK E P + LD +N++ ++LD
Sbjct: 347 YDFAEAFQNEWPSAPSRMQVLADEVGGKLAGYEQPQQFVFDFDAFEAGLDVFNISERELD 406
Query: 409 RDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS 449
D + S+ S SYAN +D L + HAF FN GS
Sbjct: 407 FDVMIKAFESDLSSEISYANLHRDPNLKAMAHAFAFNPGGS 447
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
++ V +T I I S ++LL + +L L + G+D F+ ++ SDL +P S
Sbjct: 35 LDRAVQDFTQKIEGIQSSDQLLDDYNVLKVALGAFGLDEDINNRAFIKKVLDSDLSEPTS 94
Query: 560 FANTYKDNRYKEIISSFNF 578
FAN DNRY + +F F
Sbjct: 95 FANRLNDNRYLGLAQTFGF 113
>gi|163737657|ref|ZP_02145074.1| hypothetical protein RGBS107_19038 [Phaeobacter gallaeciensis
BS107]
gi|161389183|gb|EDQ13535.1| hypothetical protein RGBS107_19038 [Phaeobacter gallaeciensis
BS107]
Length = 591
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 129/625 (20%), Positives = 236/625 (37%), Gaps = 123/625 (19%)
Query: 144 FRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRD 203
F + I I S DQL D +L L +F + + F+K VL L+ P + D
Sbjct: 42 FTQKIEGIQSSDQLLDDYNVLKVALGAFGLDEDINNRAFIKKVLDSDLSEPTSFANRLND 101
Query: 204 NRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINS 263
NR+ +A+ F F D L +EK +N
Sbjct: 102 NRYLGLAQTFGFGNDAG-----PQLPSSSVEKPYAN------------------------ 132
Query: 264 VSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNS 323
V+S D L + L L F L + FL + E+D D +
Sbjct: 133 VASPEDLLSNQTLLNQ-ALDDFGLKKYAGNEFFLMRVLESD--------------TTDPA 177
Query: 324 SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGP 383
S DS++ + ++ N + M++L+ G+ ++++ GP
Sbjct: 178 SFVNRLSDSKLADFANAFQFNQPPEYTSSMEALV-------GEFNAMNDG-------NGP 223
Query: 384 NSAEEPIIT---LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNH 440
+A+E + L+ +D+++L + L+ +L SNP DPDS N+ +D R + ++
Sbjct: 224 ANADELLENEDLLKAVVDSFDLEYTNTIF--LKRMLESNPYDPDSPVNQQEDPRYLAMSR 281
Query: 441 AFNFNA---DGSIGPIPMMQSRLTIRDNVKHY------------------ANRKRSIHDA 479
AF F + P ++ + D ++ + ++ ++
Sbjct: 282 AFGFGISDINSFTSPEELLAQPQLLEDALEQFNLSNPGEQYIRDVLESDLSDPNSFVNQP 341
Query: 480 ENKSFNSM------EQISTQKRINL---EINSEVDYYTLNINTIHSFEELLANKRILNFL 530
N +F E S R+ + E+ ++ Y + F+ A + N
Sbjct: 342 SNLAFYDFAEAFQNEWPSAPSRMQVLADEVGGKLAGYEQPQQFVFDFDAFEAGLDVFN-- 399
Query: 531 LESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIG 590
I +++ D + + F+SDL S+AN ++D K + +F F+ G G
Sbjct: 400 -----ISERELDFDVMIKAFESDLSSEISYANLHRDPNLKAMAHAFAFNPGGSDHTYPAG 454
Query: 591 KVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILG 642
Q + DLYK + E E DPN+ LAL +R + +I + + I+G
Sbjct: 455 FAQ------EIADLYKDRNFEIAIGESDPNMRLALSLERELQSIADAGGSEDAHWFGIIG 508
Query: 643 DSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSI 702
L + L L F L +++ +K+ + + F + + A ++ +++
Sbjct: 509 SPPLKSMFETALGLPASFGQLDVDRQVNEMKERAQTS-FGTT-------HPADLLEPETL 560
Query: 703 D-YKKALFSSPNQNKDPWNNSFDDP 726
D ++ N D N F DP
Sbjct: 561 DAFRNRFLLLSGLNSDQAANGFSDP 585
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 100/461 (21%), Positives = 184/461 (39%), Gaps = 79/461 (17%)
Query: 24 KDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLS 83
K PI+ + + ++I+ I + D+ + D + AL AFGL + + FIKK+L+SDLS
Sbjct: 31 KSPILDRAVQDFTQKIEGIQSSDQLLDDYNVLKVALGAFGLDEDINNRAFIKKVLDSDLS 90
Query: 84 DPKSLVNQLNSLKYQYFARSYDFS--PPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEES 141
+P S N+LN +Y A+++ F P++ S ++
Sbjct: 91 EPTSFANRLNDNRYLGLAQTFGFGNDAGPQLPSSSVE----------------------- 127
Query: 142 KYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIES 201
K + S + L ++ LL+ L F + + FL VL +P +
Sbjct: 128 ----KPYANVASPEDLLSNQTLLNQALDDFGLKKYAGNEFFLMRVLESDTTDPASFVNRL 183
Query: 202 RDNRFRAMAENFRF-QPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLA 260
D++ A F+F QP S + ++ + N N + ++ +++ K
Sbjct: 184 SDSKLADFANAFQFNQPPEYTSSMEALVGEFN----AMNDGNGPANADELLENEDLLKAV 239
Query: 261 INSVS---SFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQIN 317
++S + + FLK +ML+ + P +P+ + Q+ DP + F
Sbjct: 240 VDSFDLEYTNTIFLK-----RMLESN--PYDPDSPVN------QQEDPRYLAMSRAFGFG 286
Query: 318 FHRDNSSSTKIQQDSQIQKMLD------LYKKNCQILHD--------------------- 350
NS ++ + +Q Q + D L Q + D
Sbjct: 287 ISDINSFTSPEELLAQPQLLEDALEQFNLSNPGEQYIRDVLESDLSDPNSFVNQPSNLAF 346
Query: 351 -DKMQSLIKDYQLPLGKIKSIDNLLSGK-CQLEGPNSAEEPIITLQFALDAYNLNMQDLD 408
D ++ ++ +++ + + + GK E P + LD +N++ ++LD
Sbjct: 347 YDFAEAFQNEWPSAPSRMQVLADEVGGKLAGYEQPQQFVFDFDAFEAGLDVFNISERELD 406
Query: 409 RDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS 449
D + S+ S SYAN +D L + HAF FN GS
Sbjct: 407 FDVMIKAFESDLSSEISYANLHRDPNLKAMAHAFAFNPGGS 447
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
++ V +T I I S ++LL + +L L + G+D F+ ++ SDL +P S
Sbjct: 35 LDRAVQDFTQKIEGIQSSDQLLDDYNVLKVALGAFGLDEDINNRAFIKKVLDSDLSEPTS 94
Query: 560 FANTYKDNRYKEIISSFNF 578
FAN DNRY + +F F
Sbjct: 95 FANRLNDNRYLGLAQTFGF 113
>gi|319403954|emb|CBI77542.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 266
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 20/208 (9%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ E DYY +I + S ++ LAN +I N+ +++ G++ F + + L DP+
Sbjct: 27 QVKRETDYYVKHIIGVKSVDDFLANDKIYNYAMKAYGLEDM----IFAKGMIRKVLSDPE 82
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+A+ D RY++ +FNF +GE + Q T + Y Q +E + E +
Sbjct: 83 -YASQLVDKRYQQFAEAFNFSKYGEKA------TQRESAKTVTVNKYMQQTLEVEVGEVN 135
Query: 619 PNIALALYFKRTIPN-IRNH--------YEILGDSKLFKVVSKKLKLSPYFAVLPERKKI 669
LALYF RTI ++N+ Y+IL D L V+ K +S P +
Sbjct: 136 EGTRLALYFTRTIGGMVQNNVLTEKNWAYQILSDKALSAVIFKAFNISENVLTSPIEVQK 195
Query: 670 RILKKHIKINDFKDSKKVEDFLYAAKAM 697
+L+ + + D +D KK+E + AM
Sbjct: 196 SLLESRMSLKDLQDPKKLEHLIAKFSAM 223
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 28/230 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + + D + F + + P V E YY + I + ++D+F+ + ++++YA+K
Sbjct: 1 MISTYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDDFLANDKIYNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL DM A+ I+K+ LSDP+ +QL +YQ FA +++FS K Q +
Sbjct: 61 AYGLEDMIFAKGMIRKV----LSDPE-YASQLVDKRYQQFAEAFNFSKYGEKATQRESAK 115
Query: 120 KTIIQDYKQSHQHKEEVALEESK----YFRKNIHKI---------NSVDQLFKDRRLLDY 166
+ Y Q E + E YF + I + N Q+ D+ L
Sbjct: 116 TVTVNKYMQQTLEVEVGEVNEGTRLALYFTRTIGGMVQNNVLTEKNWAYQILSDKALSAV 175
Query: 167 VLQSFSITPKYISLP------FLKDVLTLG-LANPKKYFIESRDNRFRAM 209
+ ++F+I+ ++ P L+ ++L L +PKK +E +F AM
Sbjct: 176 IFKAFNISENVLTSPIEVQKSLLESRMSLKDLQDPKK--LEHLIAKFSAM 223
>gi|254464676|ref|ZP_05078087.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
gi|206685584|gb|EDZ46066.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
Length = 574
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 32/207 (15%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
++D Q +++ K P++ + + +RI I + D+ + D L + L AFGL + +
Sbjct: 21 TRDQQQEVYE---KSPVLDRTVKDFTQRITSIQSADQLLDDYNLLTVTLGAFGLDEDINN 77
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPP--PKVIQSDIQHKTIIQDYKQ 128
FIK++LESD+SDPKS+VN+LN +YQ A ++ F PK+
Sbjct: 78 RAFIKQVLESDMSDPKSIVNRLNDSRYQALAETFGFGSADGPKL---------------P 122
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
S + + E A I + D L +R LL L + + + FL+ VL
Sbjct: 123 SARAENEFA------------GIATPDDLLSNRTLLRKALGNAGLEGLENNQFFLQKVLE 170
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRF 215
L +P + + D R+ A A F F
Sbjct: 171 SDLDDPSSFANKLSDPRYAAFAGQFNF 197
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 102/206 (49%), Gaps = 25/206 (12%)
Query: 39 IKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQ 98
I+T D+ + ++ L AL GL + + + F++K+LESDL DP S N+L+ +Y
Sbjct: 130 FAGIATPDDLLSNRTLLRKALGNAGLEGLENNQFFLQKVLESDLDDPSSFANKLSDPRYA 189
Query: 99 YFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLF 158
FA ++F P +S I+ ++ ++ +QH + +A S D L
Sbjct: 190 AFAGQFNFGQVP-AYESSIE--ALVSEF---NQHTDGLA---------------SADDLL 228
Query: 159 KDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRF-QP 217
D LL V+ +F + Y FL+ VL +P + + D R+ A++E F F P
Sbjct: 229 ADEDLLQAVIDTFGLERTYPD--FLRRVLNSDTTDPDSFVNQLEDKRYLAVSEAFGFGWP 286
Query: 218 D-GSLSKRDKILTDMQIEKIVSNYFN 242
D +++ +++L++ Q+ + + FN
Sbjct: 287 DINAMTDPEELLSNPQLLEHALDTFN 312
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 123/295 (41%), Gaps = 37/295 (12%)
Query: 410 DQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNA---DGSIGPIPMMQS-------- 458
D LR VL S+ +DPDS+ N+ +D R + ++ AF F + P ++ +
Sbjct: 249 DFLRRVLNSDTTDPDSFVNQLEDKRYLAVSEAFGFGWPDINAMTDPEELLSNPQLLEHAL 308
Query: 459 -RLTIRDNVKHY---------ANRKRSIHDAENKSFNSMEQISTQKRINLEINSEV--DY 506
+ D + Y ++ ++ EN ++ + + + +V D
Sbjct: 309 DTFNVSDRGETYLRQVLESDLSDPNSFVNQPENLAYYNFAEAFQNEWPEPVSKMQVFADE 368
Query: 507 YTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKD 566
T + T + EL+ + + L+ G + D + + F SDL SFAN + D
Sbjct: 369 ITDKLGTFTNPRELVFDLGLFEATLDLFGQSKRSTDFDTVLKAFDSDLSSRTSFANMHYD 428
Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626
K + +F+F+ GE+S + + F ++ +LY + E + DPN+ LAL
Sbjct: 429 TGLKAMAQAFSFNA-GEVSR----EYPEGF-AEELAELYTTRQFEIEIGNSDPNMRLALA 482
Query: 627 FKRTIPNI--------RNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILK 673
+R + ++ + Y I+G L + L L A L +++ +K
Sbjct: 483 LERELQDVVDAGGSENAHWYNIIGSPPLRSIFETALGLPSGIAQLDIERQLEEMK 537
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 39 IKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQ 98
I ++ +E + + +L +AL F +SD E +++++LESDLSDP S VNQ +L Y
Sbjct: 288 INAMTDPEELLSNPQLLEHALDTFNVSD--RGETYLRQVLESDLSDPNSFVNQPENLAYY 345
Query: 99 YFARSYDFSPPPKV 112
FA ++ P V
Sbjct: 346 NFAEAFQNEWPEPV 359
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 85/223 (38%), Gaps = 65/223 (29%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
+KD+ + I+S D LL + L L A+ L+ +R ++ VL
Sbjct: 39 VKDFTQRITSIQSADQLL-------------DDYNLLTVTLGAFGLDEDINNRAFIKQVL 85
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFN-ADGSIGPIPMMQSRLTIRDNVKHYANRKRS 475
S+ SDP S N+ D R L F F ADG P + S
Sbjct: 86 ESDMSDPKSIVNRLNDSRYQALAETFGFGSADG-----PKLPS----------------- 123
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
AEN+ I + ++LL+N+ +L L + G
Sbjct: 124 -ARAENE----------------------------FAGIATPDDLLSNRTLLRKALGNAG 154
Query: 536 IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNF 578
++ + + FL ++ +SDL DP SFAN D RY FNF
Sbjct: 155 LEGLENNQFFLQKVLESDLDDPSSFANKLSDPRYAAFAGQFNF 197
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 110 PKVIQSDIQHKTIIQ---DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDY 166
P V + I + +Q D +Q K V K F + I I S DQL D LL
Sbjct: 5 PYVFGTGIAGWSFLQRTRDQQQEVYEKSPVLDRTVKDFTQRITSIQSADQLLDDYNLLTV 64
Query: 167 VLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRF 215
L +F + + F+K VL +++PK D+R++A+AE F F
Sbjct: 65 TLGAFGLDEDINNRAFIKQVLESDMSDPKSIVNRLNDSRYQALAETFGF 113
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 62/232 (26%)
Query: 401 NLNMQDLDRDQ--LRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
N ++ L+ +Q L+ VL S+ DP S+ANK D R FNF G +P +S
Sbjct: 152 NAGLEGLENNQFFLQKVLESDLDDPSSFANKLSDPRYAAFAGQFNF------GQVPAYES 205
Query: 459 RLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFE 518
+I V + N+ + + + + +D + L
Sbjct: 206 --SIEALVSEF-----------NQHTDGLASADDLLADEDLLQAVIDTFGL--------- 243
Query: 519 ELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNF 578
++ DFL + SD DP SF N +D RY + +F F
Sbjct: 244 --------------------ERTYPDFLRRVLNSDTTDPDSFVNQLEDKRYLAVSEAFGF 283
Query: 579 ---DIHGE------LSHKKIGK-VQDNFHIDDTCDLYKHQMIEKKEEEKDPN 620
DI+ LS+ ++ + D F++ D + Y Q++E + DPN
Sbjct: 284 GWPDINAMTDPEELLSNPQLLEHALDTFNVSDRGETYLRQVLES--DLSDPN 333
>gi|319898630|ref|YP_004158723.1| hypothetical protein BARCL_0458 [Bartonella clarridgeiae 73]
gi|319402594|emb|CBI76139.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 266
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 28/230 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + + D + F + + P V E YY + I + ++D+F+ + +++SYA+K
Sbjct: 1 MISTYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDDFLANDKVYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL DM A+ I+K+ LSDP+ +QL +YQ FA +++FS K Q +
Sbjct: 61 AYGLEDMIFAKGMIRKV----LSDPQ-YASQLVDKRYQQFAEAFNFSKYGEKATQRESAK 115
Query: 120 KTIIQDYKQSHQHKEEVALEESK----YFRKNIHKI---------NSVDQLFKDRRLLDY 166
+ Y Q E + E YF + + + N Q+ D+ L
Sbjct: 116 TVTVNKYMQQTLEVEAGQVNEGTRLALYFTRTVGGMVKDNILKEKNWAYQILSDKALSAV 175
Query: 167 VLQSFSITPKYISLP------FLKDVLTLG-LANPKKYFIESRDNRFRAM 209
V ++F+I+ ++ P L+ ++L L +PKK +E +F AM
Sbjct: 176 VFKAFNISENVLTSPIESQKSLLESRMSLKDLQDPKK--LEHLIAKFSAM 223
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 20/208 (9%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ E DYY +I + S ++ LAN ++ ++ +++ G++ F + + L DP+
Sbjct: 27 QVKRETDYYVKHIIGVKSVDDFLANDKVYSYAMKAYGLEDM----IFAKGMIRKVLSDPQ 82
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+A+ D RY++ +FNF +GE + Q T + Y Q +E + + +
Sbjct: 83 -YASQLVDKRYQQFAEAFNFSKYGEKA------TQRESAKTVTVNKYMQQTLEVEAGQVN 135
Query: 619 PNIALALYFKRTIPNI--------RNH-YEILGDSKLFKVVSKKLKLSPYFAVLPERKKI 669
LALYF RT+ + +N Y+IL D L VV K +S P +
Sbjct: 136 EGTRLALYFTRTVGGMVKDNILKEKNWAYQILSDKALSAVVFKAFNISENVLTSPIESQK 195
Query: 670 RILKKHIKINDFKDSKKVEDFLYAAKAM 697
+L+ + + D +D KK+E + AM
Sbjct: 196 SLLESRMSLKDLQDPKKLEHLIAKFSAM 223
>gi|159184366|ref|NP_353586.2| hypothetical protein Atu0559 [Agrobacterium tumefaciens str. C58]
gi|2459707|gb|AAB71783.1| OrfX [Agrobacterium tumefaciens]
gi|159139680|gb|AAK86371.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 211
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 14/175 (8%)
Query: 521 LANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDI 580
+A+ R+ N+ L++ G++ + F+ ++ D +FAN DNRY E+ S +F
Sbjct: 1 MADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAG 60
Query: 581 HGELSHK----KIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN 636
G + K G + + Y Q +E++ + + + LALYF+R P I++
Sbjct: 61 LGAAATATEAAKSGVIGN----------YARQTLEQEAGDDNNGVRLALYFERKAPTIKS 110
Query: 637 HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFL 691
+ L D L +V L FA K+ +++K I I D +D +KV L
Sbjct: 111 GLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALIEKSINIKDLQDPEKVGKLL 165
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 49 IKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP 108
+ D RL++YALKA GL DM++A+ FI+K+L SD + N+L+ +Y A+S DF+
Sbjct: 1 MADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAG 60
Query: 109 PPKVIQSDIQHKT-IIQDYKQSHQHKEEV----ALEESKYFRKNIHKINSVDQLFKDRRL 163
+ K+ +I +Y + +E + + YF + I S D L
Sbjct: 61 LGAAATATEAAKSGVIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDAL 120
Query: 164 LDYVLQSFSI 173
+F++
Sbjct: 121 AQVFRTTFNL 130
>gi|209967005|ref|YP_002299920.1| flagellar basal-body rod protein FlgF, putative [Rhodospirillum
centenum SW]
gi|209960471|gb|ACJ01108.1| flagellar basal-body rod protein FlgF, putative [Rhodospirillum
centenum SW]
Length = 259
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 94/198 (47%), Gaps = 12/198 (6%)
Query: 493 QKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKS 552
QK + IN D+ T I I S E LL ++R L F+L S ++S+ + L ++
Sbjct: 28 QKTVEKTIN---DFKT-RIEKIDSPEALLKDRRALEFVLTSFQLESEIGKTGILRKLLTE 83
Query: 553 DLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEK 612
D + KS AN D RY ++ +S LS K Q+ ++ + Y EK
Sbjct: 84 DPTEEKSLANRLVDPRYTKLATS--------LSGKIPEAFQNESFVNGLINNYVTNTFEK 135
Query: 613 KEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRIL 672
E + + ALYFKR I N+ + +IL D L VV K L L FA+ ++ R L
Sbjct: 136 SVGEGNTGLREALYFKRNIANVTSVSQILADRALSYVVRKGLNLPDSFAMQDFDQQKRYL 195
Query: 673 KKHIKINDFKDSKKVEDF 690
+K + + FKD VE F
Sbjct: 196 EKKLDLTKFKDPGYVEKF 213
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 35 YRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNS 94
++ RI+ I + + +KD+R + L +F L ++K+L D ++ KSL N+L
Sbjct: 38 FKTRIEKIDSPEALLKDRRALEFVLTSFQLESEIGKTGILRKLLTEDPTEEKSLANRLVD 97
Query: 95 LKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKE----EVALEESKYFRKNIHK 150
+Y A S P+ Q++ +I +Y + K L E+ YF++NI
Sbjct: 98 PRYTKLATSLS-GKIPEAFQNESFVNGLINNYVTNTFEKSVGEGNTGLREALYFKRNIAN 156
Query: 151 INSVDQLFKDRRLLDYVLQ 169
+ SV Q+ D R L YV++
Sbjct: 157 VTSVSQILAD-RALSYVVR 174
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 19/142 (13%)
Query: 144 FRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRD 203
F+ I KI+S + L KDRR L++VL SF + + L+ +LT K D
Sbjct: 38 FKTRIEKIDSPEALLKDRRALEFVLTSFQLESEIGKTGILRKLLTEDPTEEKSLANRLVD 97
Query: 204 NRFRAMAENFRFQPDGSLSKR--DKILTDMQIEKIVSNYFNNTIDCVPIVSDQN------ 255
R+ +A SLS + + + + +++NY NT + V + N
Sbjct: 98 PRYTKLAT--------SLSGKIPEAFQNESFVNGLINNYVTNTFE--KSVGEGNTGLREA 147
Query: 256 -YYKLAINSVSSFSDFLKDPKL 276
Y+K I +V+S S L D L
Sbjct: 148 LYFKRNIANVTSVSQILADRAL 169
>gi|319405395|emb|CBI79014.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 266
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 20/208 (9%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ E DYY +I + S ++ LAN +I N+ +++ G++ + + ++ L DP+
Sbjct: 27 QVKHETDYYVKHIIGVKSVDDFLANDKIYNYAMKAYGLEDMIFAKGMIRKV----LSDPQ 82
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+A D RY++ +FNF +GE + Q T + Y Q +E + + +
Sbjct: 83 -YAAQLVDKRYQQFAEAFNFSKYGEKT------TQRESAKTITVNKYIQQTLEVEAGQVN 135
Query: 619 PNIALALYFKRTIPNI--------RNH-YEILGDSKLFKVVSKKLKLSPYFAVLPERKKI 669
LALYF RT+ + +N Y+IL D L V+ K +S P +
Sbjct: 136 EGTRLALYFTRTVGGMVKDNILTEKNWAYQILSDKALSAVIFKAFNISENVLTSPIEAQK 195
Query: 670 RILKKHIKINDFKDSKKVEDFLYAAKAM 697
+L+ + + D +D KK+E + AM
Sbjct: 196 SLLESRMSLKDLQDPKKLEHLIAKFSAM 223
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 28/230 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + + D + F + K P V E YY + I + ++D+F+ + ++++YA+K
Sbjct: 1 MISTYTSYRSTIDNMKQTFDRLFKKPQVKHETDYYVKHIIGVKSVDDFLANDKIYNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL DM A+ I+K+ LSDP+ QL +YQ FA +++FS K Q +
Sbjct: 61 AYGLEDMIFAKGMIRKV----LSDPQ-YAAQLVDKRYQQFAEAFNFSKYGEKTTQRESAK 115
Query: 120 KTIIQDYKQSHQHKEEVALEESK----YFRKNIHKI---------NSVDQLFKDRRLLDY 166
+ Y Q E + E YF + + + N Q+ D+ L
Sbjct: 116 TITVNKYIQQTLEVEAGQVNEGTRLALYFTRTVGGMVKDNILTEKNWAYQILSDKALSAV 175
Query: 167 VLQSFSITPKYISLP------FLKDVLTLG-LANPKKYFIESRDNRFRAM 209
+ ++F+I+ ++ P L+ ++L L +PKK +E +F AM
Sbjct: 176 IFKAFNISENVLTSPIEAQKSLLESRMSLKDLQDPKK--LEHLIAKFSAM 223
>gi|114762157|ref|ZP_01441625.1| flagellar protein, putative [Pelagibaca bermudensis HTCC2601]
gi|114545181|gb|EAU48184.1| flagellar protein, putative [Roseovarius sp. HTCC2601]
Length = 405
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 34/205 (16%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+ D Q F+ K P ++ E Y+ E I I + +E + ++RL S AL AFG+ D +
Sbjct: 21 TMDTQRTAFN---KTPEITREAAYFTETIGSIGSAEELVGNRRLLSVALTAFGMEDELDS 77
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQ------ 124
+ +++++E D ++L N+LN ++ A ++DF P VI Q + +
Sbjct: 78 KYLVRRLIEEGTKDDEALANKLNDSRFVALADAFDFEP---VITRKTQEEGFAETVLVRY 134
Query: 125 ---------------------DYKQSHQHKEEVALEESK-YFRKNIHKINSVDQLFKDRR 162
DY + E LE S+ YF +NI +I S ++L D
Sbjct: 135 EERIRANLAQTLTEPDYVADPDYAALFAAQVEENLEISRAYFTENIGRITSAEELLLDPE 194
Query: 163 LLDYVLQSFSITPKYISLPFLKDVL 187
L +F + + S L+ L
Sbjct: 195 LRQVATTAFDLGDRARSTTLLRRAL 219
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 125/323 (38%), Gaps = 36/323 (11%)
Query: 384 NSAEEPIIT---LQFALDAYNLNMQDLDRDQL-RNVLTSNPSDPDSYANKSKDDRLIKLN 439
SAEE + L AL A+ + +LD L R ++ D ++ ANK D R + L
Sbjct: 50 GSAEELVGNRRLLSVALTAFGME-DELDSKYLVRRLIEEGTKDDEALANKLNDSRFVALA 108
Query: 440 HAFNF-------NADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQIST 492
AF+F + +++ IR N+ + D + + +
Sbjct: 109 DAFDFEPVITRKTQEEGFAETVLVRYEERIRANLAQTLTEPDYVADPDYAAL-----FAA 163
Query: 493 QKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKS 552
Q NLEI+ Y+T NI I S EELL + + + + + L +
Sbjct: 164 QVEENLEISRA--YFTENIGRITSAEELLLDPELRQVATTAFDLGDRARSTTLLRRALEE 221
Query: 553 DLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEK 612
D + + +N D + +F F E S +Q + + ++ Q E
Sbjct: 222 DPAEATALSNVLNDRNLRAFSMAFAF-YETETST----VLQTEGFASNITEQFRWQRFED 276
Query: 613 KEEEKDPNIALALYFKRTIPNIRNH--------YEILGDSKLFKVVSKKLKLSPYFAVLP 664
+ + I AL F+R++P + + Y +LG + + +V L L F+ +
Sbjct: 277 AVSDVNEAIGAALKFQRSLPELAANDLSETAKWYNVLGSTMMREVFETALSLPDGFSQID 336
Query: 665 ERKKIRIL----KKHIKINDFKD 683
K++ ++ ++ I F D
Sbjct: 337 LDKQVEVISDRARQRFGIETFSD 359
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
N+M+ T EI E Y+T I +I S EEL+ N+R+L+ L + G++ + +
Sbjct: 20 NTMDTQRTAFNKTPEITREAAYFTETIGSIGSAEELVGNRRLLSVALTAFGMEDELDSKY 79
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
+ + + KD ++ AN D+R+ + +F+F+
Sbjct: 80 LVRRLIEEGTKDDEALANKLNDSRFVALADAFDFE 114
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 93/218 (42%), Gaps = 26/218 (11%)
Query: 110 PKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQ 169
P ++ I T+ D +++ +K E+ YF + I I S ++L +RRLL L
Sbjct: 10 PGLVGWQILQNTM--DTQRTAFNKTPEITREAAYFTETIGSIGSAEELVGNRRLLSVALT 67
Query: 170 SFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+F + + S ++ ++ G + + + D+RF A+A+ F F+P + +++
Sbjct: 68 AFGMEDELDSKYLVRRLIEEGTKDDEALANKLNDSRFVALADAFDFEPVITRKTQEEGFA 127
Query: 230 DMQI----EKIVSNYFNNTIDCVPIVSDQNYYKL------------------AINSVSSF 267
+ + E+I +N T+ V+D +Y L I ++S
Sbjct: 128 ETVLVRYEERIRAN-LAQTLTEPDYVADPDYAALFAAQVEENLEISRAYFTENIGRITSA 186
Query: 268 SDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDP 305
+ L DP+L + + + F L + L E DP
Sbjct: 187 EELLLDPEL-RQVATTAFDLGDRARSTTLLRRALEEDP 223
>gi|158422871|ref|YP_001524163.1| hypothetical protein AZC_1247 [Azorhizobium caulinodans ORS 571]
gi|158329760|dbj|BAF87245.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
Length = 295
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 7/194 (3%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
E+ + YY NI ++ S ++ + N R+LN+ + + G+ + + + ++ SDL D
Sbjct: 61 EVARDTAYYEANIGSVTSVDDFVNNYRLLNYAMTAYGLSDETNAKALVKQVLSSDLSDSS 120
Query: 559 SFANTYKDNRYKEIISSF-NFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEK 617
S D RY + +F N + + + Q + Y Q +E ++
Sbjct: 121 SLVYKLNDQRYLNLAKAFANLNPNDSAASYTAATTQQ------VVNSYLEQQLENDVGQQ 174
Query: 618 DPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIK 677
D LALYF+R NI + Y ILGDS+L+KVV L + ++ +++ +
Sbjct: 175 DEGTQLALYFQRNAANITSGYSILGDSQLWKVVQTVYDLPESLGSIDINQQKDLVESKVN 234
Query: 678 INDFKDSKKVEDFL 691
I D +D KV L
Sbjct: 235 IADLQDPTKVSALL 248
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 8/152 (5%)
Query: 23 SKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDL 82
+ P V+ + YY I ++++D+F+ + RL +YA+ A+GLSD ++A+ +K++L SDL
Sbjct: 57 AAQPEVARDTAYYEANIGSVTSVDDFVNNYRLLNYAMTAYGLSDETNAKALVKQVLSSDL 116
Query: 83 SDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKT--IIQDYKQSHQHKEEVALEE 140
SD SLV +LN +Y A+++ P S T ++ Y + Q + +V ++
Sbjct: 117 SDSSSLVYKLNDQRYLNLAKAFANLNPNDSAASYTAATTQQVVNSYLE-QQLENDVGQQD 175
Query: 141 SK-----YFRKNIHKINSVDQLFKDRRLLDYV 167
YF++N I S + D +L V
Sbjct: 176 EGTQLALYFQRNAANITSGYSILGDSQLWKVV 207
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 74/153 (48%), Gaps = 11/153 (7%)
Query: 135 EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANP 194
EVA ++ Y+ NI + SVD + RLL+Y + ++ ++ + + +K VL+ L++
Sbjct: 61 EVA-RDTAYYEANIGSVTSVDDFVNNYRLLNYAMTAYGLSDETNAKALVKQVLSSDLSDS 119
Query: 195 KKYFIESRDNRFRAMAENF-RFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSD 253
+ D R+ +A+ F P+ S + T +++V++Y ++ D
Sbjct: 120 SSLVYKLNDQRYLNLAKAFANLNPNDSAASYTAATT----QQVVNSYLEQQLENDVGQQD 175
Query: 254 QN-----YYKLAINSVSSFSDFLKDPKLFKMLQ 281
+ Y++ +++S L D +L+K++Q
Sbjct: 176 EGTQLALYFQRNAANITSGYSILGDSQLWKVVQ 208
>gi|149912827|ref|ZP_01901361.1| flagellar protein, putative [Roseobacter sp. AzwK-3b]
gi|149813233|gb|EDM73059.1| flagellar protein, putative [Roseobacter sp. AzwK-3b]
Length = 267
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+ D Q K F P +S + Y+ RI+ IST +E + D+RL AL AFGL D +
Sbjct: 21 TMDAQRKAFDA---GPRISSDTAYFEARIRDISTAEELVNDRRLLRVALGAFGLQDDIDS 77
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFS 107
I+K+LE +DP +L N+L +Y+ A ++ F
Sbjct: 78 RFLIRKVLEGGTADPDALANRLTDRRYKDLADAFGFG 114
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 92/222 (41%), Gaps = 32/222 (14%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
+ DA+ K+F++ +IS S+ Y+ I I + EEL+ ++R+L L +
Sbjct: 20 ATMDAQRKAFDAGPRIS----------SDTAYFEARIRDISTAEELVNDRRLLRVALGAF 69
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHG--ELSHKKIGKV 592
G+ + ++ + DP + AN D RYK++ +F F G E GK
Sbjct: 70 GLQDDIDSRFLIRKVLEGGTADPDALANRLTDRRYKDLADAFGFGATGGPETQSPGFGK- 128
Query: 593 QDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDS 644
D DL++ + E E D + LAL +R + + N I+G
Sbjct: 129 -------DIVDLFRRRSFENAVGESDQGLRLALNAQRELAILANDTGQGDTGWLRIMGTP 181
Query: 645 KLFKVVSKKLKLSPYFAVLPERKKIRILKK----HIKINDFK 682
L KV L L FA L +++ + K + I D +
Sbjct: 182 PLRKVFETALGLPDGFAQLDLDRQLDVFKARAADRLGITDLR 223
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
++ YF I I++ ++L DRRLL L +F + S ++ VL G A+P
Sbjct: 38 DTAYFEARIRDISTAEELVNDRRLLRVALGAFGLQDDIDSRFLIRKVLEGGTADPDALAN 97
Query: 200 ESRDNRFRAMAENFRFQPDGS 220
D R++ +A+ F F G
Sbjct: 98 RLTDRRYKDLADAFGFGATGG 118
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 393 LQFALDAYNLNMQDLD-RDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIG 451
L+ AL A+ L D+D R +R VL +DPD+ AN+ D R L AF F A G
Sbjct: 62 LRVALGAFGLQ-DDIDSRFLIRKVLEGGTADPDALANRLTDRRYKDLADAFGFGATGG-- 118
Query: 452 PIPMMQSRLTIRDNVKHYANRKRSIHDAENKS 483
P QS +D V + R+RS +A +S
Sbjct: 119 --PETQSPGFGKDIVDLF--RRRSFENAVGES 146
>gi|170748128|ref|YP_001754388.1| hypothetical protein Mrad2831_1710 [Methylobacterium radiotolerans
JCM 2831]
gi|170654650|gb|ACB23705.1| protein of unknown function DUF1217 [Methylobacterium radiotolerans
JCM 2831]
Length = 472
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 67/100 (67%), Gaps = 8/100 (8%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
S+DI +K + + V+ + +Y+ E I ++++D+FI + RLF++A++AFGL DM++A
Sbjct: 12 SRDI-AKSLKNKAAERAVANDTKYFSEHIGDVTSVDDFIGNARLFNFAMRAFGLEDMAYA 70
Query: 71 EKFIKKILESDLSDPKS----LVNQLNSLKYQYFARSYDF 106
+ F+KK+L L +P + LV++L +Y+ FA +++F
Sbjct: 71 KSFMKKVL---LGEPDANGHVLVDRLQDTRYRDFANAFNF 107
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Query: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNF---- 596
V + L +I S L P + N KD + + + + N D+ + + + D F
Sbjct: 273 VADTTLTDIVWSTLGLPAT--NASKDPKAQAALIAKNLDVASLRDPRTLSQFIDRFKDAR 330
Query: 597 --HIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
T D Y Q +E +D LALYFKR I++ Y IL D L +VV L
Sbjct: 331 VAARSATVDAYVRQTLEDDAGAQDQGTRLALYFKRQAGTIKSIYGILADKALAEVVRTTL 390
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFL 691
A ++ + + + I F+D +K++ F+
Sbjct: 391 GFPAEMARSNLDSQVAQISRKLDITTFQDPEKLDRFI 427
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 12/179 (6%)
Query: 117 IQHKTIIQDYKQSHQHK--EEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSIT 174
+ + I +D +S ++K E ++KYF ++I + SVD + RL ++ +++F +
Sbjct: 6 MDYTLISRDIAKSLKNKAAERAVANDTKYFSEHIGDVTSVDDFIGNARLFNFAMRAFGLE 65
Query: 175 PKYISLPFLKDVLTLGLANPKKYFIESR--DNRFRAMAENFRFQPDGSLSKRDKILTDMQ 232
+ F+K VL LG + + + R D R+R A F F+ G + K + +
Sbjct: 66 DMAYAKSFMKKVL-LGEPDANGHVLVDRLQDTRYRDFANAFNFRSYGDDPSKPKTFDNPE 124
Query: 233 IEKIV-SNYFNNTIDCVPIV------SDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
+E ++ S N T+D + D Y +S D + DPKL +++ ++
Sbjct: 125 VEAMLESVGANKTVDQQKLAYDNQTGRDTQYISDFAAYATSVDDIVSDPKLSSIVRATV 183
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ ++ Y++ +I + S ++ + N R+ NF + + G++ + F+ ++ L +P +
Sbjct: 28 VANDTKYFSEHIGDVTSVDDFIGNARLFNFAMRAFGLEDMAYAKSFMKKVL---LGEPDA 84
Query: 560 ----FANTYKDNRYKEIISSFNFDIHGE 583
+ +D RY++ ++FNF +G+
Sbjct: 85 NGHVLVDRLQDTRYRDFANAFNFRSYGD 112
>gi|254477619|ref|ZP_05091005.1| flagellar protein, putative [Ruegeria sp. R11]
gi|214031862|gb|EEB72697.1| flagellar protein, putative [Ruegeria sp. R11]
Length = 590
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 106/456 (23%), Positives = 173/456 (37%), Gaps = 71/456 (15%)
Query: 24 KDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLS 83
K PI+ + + +I I T D+ + D + AL AFGL + FIK++LESDLS
Sbjct: 31 KSPILDRAVQDFTNKIDSIQTADQLLDDYNVLQVALGAFGLEEDIANRAFIKQVLESDLS 90
Query: 84 DPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKY 143
DP+S N+LN +Y A+++ F +D Q E
Sbjct: 91 DPRSFANRLNDNRYLGLAQTFGFGS---------------EDGPQLPSASAE-------- 127
Query: 144 FRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRD 203
K + S + L ++ LL+ L F + + FL+ VL L++ + D
Sbjct: 128 --KPYVNVASPEDLLSNKTLLNQALDDFGLQRYAGNEFFLQKVLESDLSDDNSFVNRLSD 185
Query: 204 NRFRAMAENFRF-QPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAIN 262
R A F+F P S D +L E N + ++ ++ I
Sbjct: 186 TRLADFASQFKFNAPPEYTSSMDAMLG----EFTAMNDGAGPANADELLGNETLLNAVI- 240
Query: 263 SVSSFSDFLKDPKLFK-MLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRD 321
+F +P K ML+ + D+ + Q+ DP V + F
Sbjct: 241 --ETFDLEYTNPIFLKRMLEADPY--------DENSAVRQQEDPRVLAMSRAFGFGMPDI 290
Query: 322 NSSSTK---IQQDSQIQKMLDLYKKNC-------QILHDD--------------KMQSLI 357
NS S+ + ++++LD + + Q+L D L
Sbjct: 291 NSFSSPDELFARPELLEEVLDQFNNSNPGEDFLRQVLESDLSDPNSFVNQPGNLAFFDLA 350
Query: 358 KDYQL----PLGKIKSIDNLLSGK-CQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQL 412
+ YQ P K+K + + + K E P + LD +N+N + LD +
Sbjct: 351 EAYQTEWTPPPSKVKVLADEVGTKLSGYENPRQFVFDFDAFEAGLDVFNMNERQLDFSFM 410
Query: 413 RNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADG 448
V S+ S SYAN +D + + +AF FN G
Sbjct: 411 LKVFESDLSSETSYANLYRDPNVQAMANAFAFNPGG 446
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 77/194 (39%), Gaps = 50/194 (25%)
Query: 392 TLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIG 451
LQ AL A+ L +R ++ VL S+ SDP S+AN+ D+R + L F F ++ G
Sbjct: 61 VLQVALGAFGLEEDIANRAFIKQVLESDLSDPRSFANRLNDNRYLGLAQTFGFGSED--G 118
Query: 452 PIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNI 511
P +L K Y N
Sbjct: 119 P------QLPSASAEKPYVN---------------------------------------- 132
Query: 512 NTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKE 571
+ S E+LL+NK +LN L+ G+ E FL ++ +SDL D SF N D R +
Sbjct: 133 --VASPEDLLSNKTLLNQALDDFGLQRYAGNEFFLQKVLESDLSDDNSFVNRLSDTRLAD 190
Query: 572 IISSFNFDIHGELS 585
S F F+ E +
Sbjct: 191 FASQFKFNAPPEYT 204
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 99/243 (40%), Gaps = 36/243 (14%)
Query: 24 KDPIVSCEERYYR---ERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILES 80
+DP V R + I S+ DE L L F S+ E F++++LES
Sbjct: 272 EDPRVLAMSRAFGFGMPDINSFSSPDELFARPELLEEVLDQFNNSN--PGEDFLRQVLES 329
Query: 81 DLSDPKSLVNQLNSLKYQYFARSY--DFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVAL 138
DLSDP S VNQ +L + A +Y +++PPP ++ ++ D EV
Sbjct: 330 DLSDPNSFVNQPGNLAFFDLAEAYQTEWTPPPSKVK-------VLAD---------EVGT 373
Query: 139 EESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYF 198
+ S Y + Q D + L F++ + + F+ V L++ Y
Sbjct: 374 KLSGY--------ENPRQFVFDFDAFEAGLDVFNMNERQLDFSFMLKVFESDLSSETSYA 425
Query: 199 IESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYK 258
RD +AMA F F P G+ D+ E+I Y + + SD N +
Sbjct: 426 NLYRDPNVQAMANAFAFNPGGN----DRTYPPGFAEEIADLYTDRNFEIAIGESDPN-MR 480
Query: 259 LAI 261
LA+
Sbjct: 481 LAL 483
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 107/272 (39%), Gaps = 61/272 (22%)
Query: 410 DQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHY 469
D LR VL S+ SDP+S+ N+ + L A+ + ++ + + + Y
Sbjct: 321 DFLRQVLESDLSDPNSFVNQPGNLAFFDLAEAYQTEWTPPPSKVKVLADEVGTK--LSGY 378
Query: 470 ANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNF 529
N ++ + D F++ E + +D + +N +R L+F
Sbjct: 379 ENPRQFVFD-----FDAFE-------------AGLDVFNMN-------------ERQLDF 407
Query: 530 LLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKI 589
F+ ++F+SDL S+AN Y+D + + ++F F+ G
Sbjct: 408 --------------SFMLKVFESDLSSETSYANLYRDPNVQAMANAFAFNPGGNDRTYPP 453
Query: 590 GKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEIL 641
G ++ DLY + E E DPN+ LAL +R + +I + Y I+
Sbjct: 454 G------FAEEIADLYTDRNFEIAIGESDPNMRLALALERELQSIADAGGSEDAHWYGII 507
Query: 642 GDSKLFKVVSKKLKLSPYFAVLPERKKIRILK 673
G L V L L F L +++ +K
Sbjct: 508 GSPPLKTVFESALGLPSSFGQLDVDRQVNEMK 539
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 482 KSFNSMEQISTQKRINLE----INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGID 537
+N +++ TQ++ E ++ V +T I++I + ++LL + +L L + G++
Sbjct: 13 AGWNFLDRTRTQQQQIFEKSPILDRAVQDFTNKIDSIQTADQLLDDYNVLQVALGAFGLE 72
Query: 538 SQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNF 578
F+ ++ +SDL DP+SFAN DNRY + +F F
Sbjct: 73 EDIANRAFIKQVLESDLSDPRSFANRLNDNRYLGLAQTFGF 113
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 30/194 (15%)
Query: 396 ALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNA--------D 447
ALD + L + L+ VL S+ SD +S+ N+ D RL F FNA D
Sbjct: 149 ALDDFGLQRYAGNEFFLQKVLESDLSDDNSFVNRLSDTRLADFASQFKFNAPPEYTSSMD 208
Query: 448 GSIGPIPMMQSRLTIRDNVKHYANRK-------------------RSIHDAENKSFNSME 488
+G M + + N + + +A+ NS
Sbjct: 209 AMLGEFTAMNDGAGPANADELLGNETLLNAVIETFDLEYTNPIFLKRMLEADPYDENSAV 268
Query: 489 QISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCE 548
+ R+ L ++ + +IN+ S +EL A +L +L+ ++ EDFL +
Sbjct: 269 RQQEDPRV-LAMSRAFGFGMPDINSFSSPDELFARPELLEEVLDQ--FNNSNPGEDFLRQ 325
Query: 549 IFKSDLKDPKSFAN 562
+ +SDL DP SF N
Sbjct: 326 VLESDLSDPNSFVN 339
>gi|170744539|ref|YP_001773194.1| hypothetical protein M446_6502 [Methylobacterium sp. 4-46]
gi|168198813|gb|ACA20760.1| protein of unknown function DUF1217 [Methylobacterium sp. 4-46]
Length = 429
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
++DI +K + + + V + Y+ I + ++D+F+KD RL++YA++A GL +M +A
Sbjct: 12 TRDI-TKTLTRKANEKTVRRDTDYFTANIGKVKSVDDFMKDDRLYAYAMRAHGLEEMIYA 70
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFS 107
+ F++++L ++ P S N+L +Y FAR + F+
Sbjct: 71 KAFMRRVLTEGVASPSSFANRLADQRYVEFARQFQFA 107
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 141/378 (37%), Gaps = 81/378 (21%)
Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDP 423
+GK+KS+D+ + +A+ A+ L + +R VLT + P
Sbjct: 39 IGKVKSVDDFMKDDR-------------LYAYAMRAHGLEEMIYAKAFMRRVLTEGVASP 85
Query: 424 DSYANKSKDDRLIKLNHAFNFN-----------------ADGSIGP-IPM---------- 455
S+AN+ D R ++ F F AD +GP IP
Sbjct: 86 SSFANRLADQRYVEFARQFQFATDVTAQGADPVMTGKTYADYRLGPAIPARLSGAFPLGQ 145
Query: 456 -------MQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQIS--TQKRINLEINSEVDY 506
+++R TI V + +I ++ +++ ++ T + INS++
Sbjct: 146 AMDFSDKVEARFTISSRVDATTTKSATIVLNKSTLRDAVSDLARVTPAELVAAINSQI-- 203
Query: 507 YTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFL-CEIFKSDLKDPK-SFANTY 564
S E LA K ++ L +KG E FL F S D K Y
Sbjct: 204 -------AASGEANLAGK--VSASLGAKG-------ELFLETTAFASLGPDGKPGGTGAY 247
Query: 565 KDNRYKEIISSFNFDIHG-------ELSHKKIGKVQDNFHIDDTCDL-YKHQMIEKKEEE 616
D Y+ I +L+ G L Y +Q IE+ E E
Sbjct: 248 ADVLYEGGGQVRTITIQNLAPAEGRQLADVGFGSALPMSARAQRVTLAYLNQAIERDEGE 307
Query: 617 KDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR---ILK 673
KD + LALYF R P + + Y+IL D L KV + L L +R ++K
Sbjct: 308 KDTGVRLALYFTRMAPTLSSPYDILSDPALTKVANVVLGLPATSGAATSDALVRRAALIK 367
Query: 674 KHIKINDFKDSKKVEDFL 691
+ I I F+D KV+ F+
Sbjct: 368 QKIDIASFQDPAKVQAFV 385
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
+ + E+ ++ YF NI K+ SVD KD RL Y +++ + + F++ VLT
Sbjct: 20 TRKANEKTVRRDTDYFTANIGKVKSVDDFMKDDRLYAYAMRAHGLEEMIYAKAFMRRVLT 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
G+A+P + D R+ A F+F D + D ++T
Sbjct: 80 EGVASPSSFANRLADQRYVEFARQFQFATDVTAQGADPVMTG 121
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 492 TQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFK 551
T+K + + DY+T NI + S ++ + + R+ + + + G++ + F+ +
Sbjct: 20 TRKANEKTVRRDTDYFTANIGKVKSVDDFMKDDRLYAYAMRAHGLEEMIYAKAFMRRVLT 79
Query: 552 SDLKDPKSFANTYKDNRYKEIISSFNF 578
+ P SFAN D RY E F F
Sbjct: 80 EGVASPSSFANRLADQRYVEFARQFQF 106
>gi|89056691|ref|YP_512142.1| flagellar protein, putative [Jannaschia sp. CCS1]
gi|88866240|gb|ABD57117.1| flagellar protein putative [Jannaschia sp. CCS1]
Length = 265
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 13 DIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEK 72
D+Q F+ +DP+ S + Y+RE I +S+ ++ + D RL AL AFGL D
Sbjct: 23 DVQQTRFA---EDPVQSRDREYFRENIGAVSSAEDLVGDYRLLRVALGAFGLQDDLPNRA 79
Query: 73 FIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQS 115
F++K+L + D +L N+L Y+ FA ++ F SP P + Q
Sbjct: 80 FVEKVLSDGVLDDDALSNKLADKTYRAFAEAFGFGSPLPPLTQG 123
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 111 KVIQS--DIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL 168
KV+QS D+Q +D QS + YFR+NI ++S + L D RLL L
Sbjct: 16 KVLQSTLDVQQTRFAEDPVQSRDRE---------YFRENIGAVSSAEDLVGDYRLLRVAL 66
Query: 169 QSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRF 215
+F + + F++ VL+ G+ + + D +RA AE F F
Sbjct: 67 GAFGLQDDLPNRAFVEKVLSDGVLDDDALSNKLADKTYRAFAEAFGF 113
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 74/205 (36%), Gaps = 23/205 (11%)
Query: 505 DYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTY 564
+Y+ NI + S E+L+ + R+L L + G+ F+ ++ + D + +N
Sbjct: 40 EYFRENIGAVSSAEDLVGDYRLLRVALGAFGLQDDLPNRAFVEKVLSDGVLDDDALSNKL 99
Query: 565 KDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALA 624
D Y+ +F F Q D + Q E E+D ++ LA
Sbjct: 100 ADKTYRAFAEAFGF------GSPLPPLTQGPGFADKILARFDEQAFEVAVGEQDTDMRLA 153
Query: 625 LYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKI------- 669
L R +P I + +LG L +V L L K++
Sbjct: 154 LEATREVPGIASADTSDTTAWLTVLGKPSLRQVFETAFALPSSIGTLDLDKQLDAFRGGA 213
Query: 670 -RILKKHIKINDFKDSKKVEDFLYA 693
R+L + +D VED + A
Sbjct: 214 ERVLGSS-EFAALQDPTVVEDLVQA 237
>gi|159045898|ref|YP_001534692.1| hypothetical protein Dshi_3358 [Dinoroseobacter shibae DFL 12]
gi|157913658|gb|ABV95091.1| protein of unknown function DUF1217 [Dinoroseobacter shibae DFL 12]
Length = 263
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 21/196 (10%)
Query: 503 EVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFAN 562
E DY+ NI I + E+L+A++R+L F L + G+D+ + F+ +I D + +N
Sbjct: 38 EEDYFRANIGNIETAEQLVADRRLLAFSLSAFGLDADLPNKFFIQKILSDGTSDNAALSN 97
Query: 563 TYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIA 622
D Y+E +F L ++ K Q D+ Y+ Q E+ + ++
Sbjct: 98 RLSDKTYREFSDAFG------LGQGQVRKTQQTSFADEIIQKYETQKFEESVGNVNDDLR 151
Query: 623 LALYFKRTIPNIRNH--------YEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKK 674
LAL KR I ++ + + +LG L +L FA L +++ +L++
Sbjct: 152 LALNLKREISDLASSDMSERAKLFTVLGSPPLRTTFETAFRLPSAFAGLDIDRQVTVLEE 211
Query: 675 HIK-------INDFKD 683
++ I+ FKD
Sbjct: 212 KLESAFGDASISQFKD 227
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 31 EERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVN 90
EE Y+R I +I T ++ + D+RL +++L AFGL + FI+KIL SD +L N
Sbjct: 38 EEDYFRANIGNIETAEQLVADRRLLAFSLSAFGLDADLPNKFFIQKILSDGTSDNAALSN 97
Query: 91 QLNSLKYQYFARSYDFSPPP--KVIQSDIQHKTIIQDYKQSHQHKEEVA 137
+L+ Y+ F+ ++ K Q+ + IIQ Y ++ + +E V
Sbjct: 98 RLSDKTYREFSDAFGLGQGQVRKTQQTSFADE-IIQKY-ETQKFEESVG 144
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 15/160 (9%)
Query: 126 YKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKD 185
+ QS Q++ E YFR NI I + +QL DRRLL + L +F + + F++
Sbjct: 29 FGQSTQYRRE-----EDYFRANIGNIETAEQLVADRRLLAFSLSAFGLDADLPNKFFIQK 83
Query: 186 VLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI 245
+L+ G ++ D +R ++ F + D I+K + F ++
Sbjct: 84 ILSDGTSDNAALSNRLSDKTYREFSDAFGLGQGQVRKTQQTSFADEIIQKYETQKFEESV 143
Query: 246 DCVPIVSDQNYYKLAIN-----SVSSFSDFLKDPKLFKML 280
V + +LA+N S + SD + KLF +L
Sbjct: 144 GNV-----NDDLRLALNLKREISDLASSDMSERAKLFTVL 178
>gi|254471377|ref|ZP_05084779.1| flagellar basal-body rod protein flgf [Pseudovibrio sp. JE062]
gi|211959523|gb|EEA94721.1| flagellar basal-body rod protein flgf [Pseudovibrio sp. JE062]
Length = 365
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 51/86 (59%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
+KDP ++ E +YY E + T+D+ + D RL+++ +K GL DM++A+ ++K+L
Sbjct: 21 TAKDPEIAREIKYYEENFSKVETVDDLLNDYRLYNFMMKTMGLEDMAYAKGMVRKVLVEG 80
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFS 107
D +L N L +++ A ++ F+
Sbjct: 81 TDDSGALANTLKDKRFKELAEAFPFN 106
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
EI E+ YY N + + + ++LL + R+ NF++++ G++ + + ++ D
Sbjct: 26 EIAREIKYYEENFSKVETVDDLLNDYRLYNFMMKTMGLEDMAYAKGMVRKVLVEGTDDSG 85
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ ANT KD R+KE+ +F F+ G + K + + +D L+ + EE D
Sbjct: 86 ALANTLKDKRFKELAEAFPFNKDGTIKGKFDWESE---GLDPRMVLWSNT----PGEEVD 138
Query: 619 PNIALALYFKRTIP-NIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIK 677
LA YF +P ++ +IL D L++V++ + P+ ++I ++I
Sbjct: 139 DVDRLAEYFTLKMPRDVIFTTQILADPALYEVITVAFDVPEEIINGPKSERIDWFDENID 198
Query: 678 INDFKDSKKVEDFLYAAKAMDHQSI 702
I K +++D + AK D+ I
Sbjct: 199 IEALKKPSELKDTI--AKYRDNLEI 221
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 110/237 (46%), Gaps = 23/237 (9%)
Query: 127 KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
K+ E+A E KY+ +N K+ +VD L D RL ++++++ + + ++ V
Sbjct: 18 KERTAKDPEIA-REIKYYEENFSKVETVDDLLNDYRLYNFMMKTMGLEDMAYAKGMVRKV 76
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIV--SNYFNNT 244
L G + +D RF+ +AE F F DG++ + ++ ++V SN
Sbjct: 77 LVEGTDDSGALANTLKDKRFKELAEAFPFNKDGTIKGKFDWESEGLDPRMVLWSNTPGEE 136
Query: 245 IDCVPIVSDQNYYKLAI-NSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQEN 303
+D V +++ Y+ L + V + L DP L++++ ++ F + EI N
Sbjct: 137 VDDVDRLAE--YFTLKMPRDVIFTTQILADPALYEVITVA-FDVPEEII----------N 183
Query: 304 DPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY 360
P ++ +F +N +++ S+++ + Y+ N +I D+ + +++ Y
Sbjct: 184 GPKSERIDWF------DENIDIEALKKPSELKDTIAKYRDNLEIREADRTKGIVEQY 234
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 621 IALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIND 680
+ LAL F+RT NI + YEILG L++VV L +S + ++ + I
Sbjct: 250 VRLALNFQRTGGNITSAYEILGSPALYQVVRTVLGMSESMVGSDIDNQAAVINEKFDIKK 309
Query: 681 FKDSKKVEDFL 691
F+D ++V+ F+
Sbjct: 310 FQDPEEVDKFV 320
>gi|255263694|ref|ZP_05343036.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255106029|gb|EET48703.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 262
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 13 DIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEK 72
D+Q F+ + P + Y+RE I I+T + + D++L AL AFGL D +
Sbjct: 22 DVQQTAFN---EAPQIERATSYFRENISKITTAEALVADRQLLEVALGAFGLDDDINNTY 78
Query: 73 FIKKILESDLSDPKSLVNQLNSLKYQYFARSY---DFSPPPKVIQS 115
FIK ILE D +L N+L +Y+ FA S+ DFS P V+ +
Sbjct: 79 FIKTILEEGTLDDDALANRLADSRYKEFAESFGFGDFSTPRTVLST 124
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 14/185 (7%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
+I Y+ NI+ I + E L+A++++L L + G+D F+ I + D
Sbjct: 33 QIERATSYFRENISKITTAEALVADRQLLEVALGAFGLDDDINNTYFIKTILEEGTLDDD 92
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ AN D+RYKE SF F G+ S + V F DD + ++ E+ E++
Sbjct: 93 ALANRLADSRYKEFAESFGF---GDFSTPR--TVLSTFP-DDIINRFEAGQFEQAVGEQN 146
Query: 619 PNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR 670
P++ LAL F T+ +I ++I+G+ K+ L L FA + +++
Sbjct: 147 PDLRLALNFSSTMESILATDSSNDVLWFKIMGNPPARKLFETALGLPASFAQIDIDRQLG 206
Query: 671 ILKKH 675
I K+
Sbjct: 207 IFKER 211
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 141 SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIE 200
+ YFR+NI KI + + L DR+LL+ L +F + + F+K +L G +
Sbjct: 38 TSYFRENISKITTAEALVADRQLLEVALGAFGLDDDINNTYFIKTILEEGTLDDDALANR 97
Query: 201 SRDNRFRAMAENFRF 215
D+R++ AE+F F
Sbjct: 98 LADSRYKEFAESFGF 112
>gi|89068718|ref|ZP_01156104.1| hypothetical protein OG2516_06756 [Oceanicola granulosus HTCC2516]
gi|89045681|gb|EAR51743.1| hypothetical protein OG2516_06756 [Oceanicola granulosus HTCC2516]
Length = 274
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 82/188 (43%), Gaps = 4/188 (2%)
Query: 504 VDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANT 563
+D + + I + E+LLA++ + F++ + ++ Q + + ++ + D+ D K+ N
Sbjct: 37 IDTFRERVGGIETVEDLLADQDVYAFVMRAYDLEDQIFGKALVGKVLEGDITDSKALINR 96
Query: 564 YKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIAL 623
D R +E+ + F G K D + D Y Q + +++ + +
Sbjct: 97 LTDPRMRELYTGLGFTEGG----TKNANTLDPAWQEAMVDRYVEQHFINAQADQNATVGV 152
Query: 624 ALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKD 683
AL F+R P I ++L D+ L ++ L + A L K+ + + I +D
Sbjct: 153 ALEFRRAAPEISTWMDVLKDADLSTLMRTALGVPSSVAQLDIDKQAELFARKFDITKLQD 212
Query: 684 SKKVEDFL 691
+VE +
Sbjct: 213 PAEVEKLV 220
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 44/73 (60%)
Query: 35 YRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNS 94
+RER+ I T+++ + D+ ++++ ++A+ L D + + K+LE D++D K+L+N+L
Sbjct: 40 FRERVGGIETVEDLLADQDVYAFVMRAYDLEDQIFGKALVGKVLEGDITDSKALINRLTD 99
Query: 95 LKYQYFARSYDFS 107
+ + F+
Sbjct: 100 PRMRELYTGLGFT 112
>gi|119384357|ref|YP_915413.1| flagellar protein, putative [Paracoccus denitrificans PD1222]
gi|119374124|gb|ABL69717.1| flagellar protein, putative [Paracoccus denitrificans PD1222]
Length = 264
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 20 STVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGL-SDMSHAEKFIKKIL 78
+S+D ++ + Y+ +R + T D+F+ D R+ + AL+AFGL SD+S+ + F+KK+L
Sbjct: 27 GALSQDHVIRSSKEYFSQRFPLVETADQFVNDYRILTVALRAFGLDSDISN-KYFLKKVL 85
Query: 79 ESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYK 127
E+D +D S +N+L+ +Y ++ F P I +II+ Y+
Sbjct: 86 EADPNDSGSFINRLSDKRYLRMNQALSFYAPLDERGGVIDISSIIEKYE 134
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 19/215 (8%)
Query: 476 IHDAENKSFNSMEQISTQKRINLE----INSEVDYYTLNINTIHSFEELLANKRILNFLL 531
I S+ +E+ ++R L I S +Y++ + + ++ + + RIL L
Sbjct: 7 IGPGGYASWKILERTMLRQRGALSQDHVIRSSKEYFSQRFPLVETADQFVNDYRILTVAL 66
Query: 532 ESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGK 591
+ G+DS + FL ++ ++D D SF N D RY + + +F + L + G
Sbjct: 67 RAFGLDSDISNKYFLKKVLEADPNDSGSFINRLSDKRYLRMNQALSF--YAPLDER--GG 122
Query: 592 VQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIR--------NHYEILGD 643
V D I + Y+ + +EK + P I LAL +R + ++ Y++L
Sbjct: 123 VID---ISSIIEKYEIRSLEKNIGGRYPEIELALNARRELSDLAASDASENVKWYQVLSS 179
Query: 644 SKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKI 678
L +V L F+ L +++ LK I
Sbjct: 180 KPLRRVFEVAYGLGEGFSALSIDRQLYELKGRTGI 214
>gi|254488868|ref|ZP_05102073.1| flagellar protein, putative [Roseobacter sp. GAI101]
gi|214045737|gb|EEB86375.1| flagellar protein, putative [Roseobacter sp. GAI101]
Length = 262
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 27/189 (14%)
Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKIL 78
F T +K + + Y+++ I I T + +KD+RL + L AFGL D + FI+K+L
Sbjct: 25 FETFTKSVELKRDTEYFQKNIGAIETAEGLVKDRRLLTVTLGAFGLQDDINNRYFIRKVL 84
Query: 79 ESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVAL 138
E ++ SL N+ +Y ++++ F P + A
Sbjct: 85 EEGTTNDDSLANRFADPRYAELSKAFGFGPN-----------------ESRKNGASGFAA 127
Query: 139 EESKYFRKNIHKINSVDQ-------LFKDRRLLDYVLQSFSITPKYISL---PFLKDVLT 188
E S F+ N ++++ DQ L+ R+L+D S+ K+ ++ P L+++
Sbjct: 128 EISAKFQANSFEVSTGDQDQAMRIALYAQRQLVDIAESDGSVDTKWFTIMGDPPLRNLFQ 187
Query: 189 LGLANPKKY 197
L P+ +
Sbjct: 188 KALNLPESF 196
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 94/210 (44%), Gaps = 21/210 (10%)
Query: 497 NLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKD 556
++E+ + +Y+ NI I + E L+ ++R+L L + G+ F+ ++ + +
Sbjct: 31 SVELKRDTEYFQKNIGAIETAEGLVKDRRLLTVTLGAFGLQDDINNRYFIRKVLEEGTTN 90
Query: 557 PKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEE 616
S AN + D RY E+ +F F G +K G F + + ++ E +
Sbjct: 91 DDSLANRFADPRYAELSKAFGF---GPNESRKNGA--SGFAAEISAK-FQANSFEVSTGD 144
Query: 617 KDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKK 668
+D + +ALY +R + +I + I+GD L + K L L F + ++
Sbjct: 145 QDQAMRIALYAQRQLVDIAESDGSVDTKWFTIMGDPPLRNLFQKALNLPESFGQIDIDQQ 204
Query: 669 IRILKKHIK-------INDFKDSKKVEDFL 691
+ + K+ K I F D++K+++ +
Sbjct: 205 LGVFKERAKKAFGTEDIATFGDTEKLQELI 234
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
+++YF+KNI I + + L KDRRLL L +F + + F++ VL G N
Sbjct: 37 DTEYFQKNIGAIETAEGLVKDRRLLTVTLGAFGLQDDINNRYFIRKVLEEGTTNDDSLAN 96
Query: 200 ESRDNRFRAMAENFRFQPDGS 220
D R+ +++ F F P+ S
Sbjct: 97 RFADPRYAELSKAFGFGPNES 117
>gi|163797864|ref|ZP_02191808.1| hypothetical protein BAL199_20070 [alpha proteobacterium BAL199]
gi|159176826|gb|EDP61394.1| hypothetical protein BAL199_20070 [alpha proteobacterium BAL199]
Length = 829
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 503 EVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFAN 562
++D + ++ + + ++LL ++R L+F+L + G++S+ L + SD D SFAN
Sbjct: 52 KIDAFKKSVGKLSTVDDLLKDRRTLSFVLSAFGLESEVNNPGKLKAVLNSDPDDINSFAN 111
Query: 563 TYKDNRYKEI---ISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
D+R+ E+ +S+ F + K ++ D F + ++ + + +D
Sbjct: 112 RLSDSRFGELAAFVSAPAFGLKNLTVSDKQSQLIDKFLTNG----FEQSLAAQNPAARD- 166
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
AL+F R I ++ N ++ILGD L +V+ L L A K+ +++ K++
Sbjct: 167 ----ALFFLRRINSVENTFDILGDLPLRSIVTTALNLPAEIARQSVDKQAALIEAKFKLD 222
Query: 680 DFK 682
FK
Sbjct: 223 SFK 225
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 35 YRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNS 94
+++ + +ST+D+ +KD+R S+ L AFGL + +K +L SD D S N+L+
Sbjct: 56 FKKSVGKLSTVDDLLKDRRTLSFVLSAFGLESEVNNPGKLKAVLNSDPDDINSFANRLSD 115
Query: 95 LKYQYFARSYDFSPPPKVI---------QSDIQHKTIIQDYKQSHQHKEEVALEESKYFR 145
++ A F P QS + K + ++QS + A ++ +F
Sbjct: 116 SRFGELAA---FVSAPAFGLKNLTVSDKQSQLIDKFLTNGFEQSLAAQNPAA-RDALFF- 170
Query: 146 KNIHKINSVDQLF 158
+ +INSV+ F
Sbjct: 171 --LRRINSVENTF 181
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 8/162 (4%)
Query: 127 KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+ + +E+V + + F+K++ K+++VD L KDRR L +VL +F + + + LK V
Sbjct: 40 RTAFAEREDV-VRKIDAFKKSVGKLSTVDDLLKDRRTLSFVLSAFGLESEVNNPGKLKAV 98
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQ---IEKIVSNYFNN 243
L + + D+RF +A F P + ++ ++D Q I+K ++N F
Sbjct: 99 LNSDPDDINSFANRLSDSRFGELAA-FVSAP--AFGLKNLTVSDKQSQLIDKFLTNGFEQ 155
Query: 244 TIDCV-PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
++ P D ++ INSV + D L D L ++ +L
Sbjct: 156 SLAAQNPAARDALFFLRRINSVENTFDILGDLPLRSIVTTAL 197
>gi|86139476|ref|ZP_01058045.1| flagellar protein, putative [Roseobacter sp. MED193]
gi|85823979|gb|EAQ44185.1| flagellar protein, putative [Roseobacter sp. MED193]
Length = 268
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 32/189 (16%)
Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKIL 78
F +KDPI+ + Y+ E I ++ T ++ + D RL AL AFGL+ ++ I+K+L
Sbjct: 26 FEHFNKDPILERDNEYFMENIGNVKTAEDLVSDYRLLEVALNAFGLASEIDSKAMIQKVL 85
Query: 79 ESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS------DIQHKTIIQDYKQSHQH 132
E +L N+L ++ F ++ F P + +I K ++Q ++ +
Sbjct: 86 EDGSEADDALANKLGDDRWIDFTDAFKFGPGLAPVTGLTYKMQEIADKNVVQSFEDAV-G 144
Query: 133 KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL-----QSFSITPKYISL---PFLK 184
++V+++ + L+ +R L+D V + SIT +++++ P L+
Sbjct: 145 AQDVSMQIA---------------LYAERELVDLVTFDDEGEELSITGQWLNIIGQPQLQ 189
Query: 185 DVL--TLGL 191
++ TLGL
Sbjct: 190 SMMQTTLGL 198
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%)
Query: 130 HQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTL 189
H +K+ + +++YF +NI + + + L D RLL+ L +F + + S ++ VL
Sbjct: 28 HFNKDPILERDNEYFMENIGNVKTAEDLVSDYRLLEVALNAFGLASEIDSKAMIQKVLED 87
Query: 190 GLANPKKYFIESRDNRFRAMAENFRFQP 217
G + D+R+ + F+F P
Sbjct: 88 GSEADDALANKLGDDRWIDFTDAFKFGP 115
>gi|56698279|ref|YP_168652.1| flagellar protein, putative [Ruegeria pomeroyi DSS-3]
gi|56680016|gb|AAV96682.1| flagellar protein, putative [Ruegeria pomeroyi DSS-3]
Length = 265
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 13 DIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEK 72
D Q++ FS + + + E Y+ E+I + T ++ + D+RL AL AFGL D +
Sbjct: 23 DAQAQSFSNST---VRNRESSYFMEKIGQVKTAEDLVSDRRLLQVALGAFGLEDDLNNTY 79
Query: 73 FIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP 108
F++KILE + +L N+L+ +Y+ F++++ P
Sbjct: 80 FVRKILEDGTTSSDALANKLSDKRYREFSKAFGLGP 115
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 31/227 (13%)
Query: 477 HDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGI 536
+DA+ +SF++ ST + N E Y+ I + + E+L++++R+L L + G+
Sbjct: 22 YDAQAQSFSN----STVR------NRESSYFMEKIGQVKTAEDLVSDRRLLQVALGAFGL 71
Query: 537 DSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNF 596
+ F+ +I + + AN D RY+E +F GE+ + G V
Sbjct: 72 EDDLNNTYFVRKILEDGTTSSDALANKLSDKRYREFSKAFGLG-PGEI--RTTGLVT--- 125
Query: 597 HIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFK 648
++D + E+ +D + +ALY + + + + + ++G L K
Sbjct: 126 FMEDIVAKNEAAGFEQAVGAQDETMRIALYAQHELKALADDRSSDNAKWFSLMGIPPLRK 185
Query: 649 VVSKKLKLSPYFAVLPERKKIRILKKHI-------KINDFKDSKKVE 688
++ L L + K++ I + + +++ F D + VE
Sbjct: 186 MMETALGLPSGLGSVDIDKQLEIFQDKLQRLTGSPQVSQFTDPEMVE 232
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
ES YF + I ++ + + L DRRLL L +F + + F++ +L G +
Sbjct: 38 ESSYFMEKIGQVKTAEDLVSDRRLLQVALGAFGLEDDLNNTYFVRKILEDGTTSSDALAN 97
Query: 200 ESRDNRFRAMAENFRFQP 217
+ D R+R ++ F P
Sbjct: 98 KLSDKRYREFSKAFGLGP 115
>gi|148259125|ref|YP_001233252.1| hypothetical protein Acry_0105 [Acidiphilium cryptum JF-5]
gi|146400806|gb|ABQ29333.1| protein of unknown function DUF1217 [Acidiphilium cryptum JF-5]
Length = 290
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ ++ +T +N+ + ++LL N +L LL + G+ SQ + S+ DP
Sbjct: 69 QVQRDIAAFTKAVNSAKTAKQLLQNPTVLKVLLTANGLGSQVGFPALAQKALLSNPSDPN 128
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
AN + + ++ I+ + + K + +Q I + Y + + +++
Sbjct: 129 GLANQLSSTNSQWLSTA---QIY-QFATKGLSIIQKPSSISTLTNAYAEVLWRQSLDKQT 184
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKI 678
P ++ ALYF + N +ILGDS + VV+ L + A P + + + + +
Sbjct: 185 PGLSNALYFIQNAQKFTNATQILGDSVMRSVVTTALGVPQQIAFQPLLAQEQAITSRLDV 244
Query: 679 NDFKDSKKVEDF 690
+ F++ + V+ F
Sbjct: 245 SKFQNKQFVQSF 256
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 19/225 (8%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+KDIQ++ +K P V + + + + T + +++ + L A GL
Sbjct: 58 TKDIQAE-----AKSPQVQRDIAAFTKAVNSAKTAKQLLQNPTVLKVLLTANGLGSQVGF 112
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYF--ARSYDFSPPP-KVIQSDIQHKTIIQDYK 127
+K L S+ SDP L NQL+S Q+ A+ Y F+ +IQ T+ Y
Sbjct: 113 PALAQKALLSNPSDPNGLANQLSSTNSQWLSTAQIYQFATKGLSIIQKPSSISTLTNAYA 172
Query: 128 QSHQH----KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL-PF 182
+ K+ L + YF +N K + Q+ D + V + + P+ I+ P
Sbjct: 173 EVLWRQSLDKQTPGLSNALYFIQNAQKFTNATQILGDSVMRSVVTTALGV-PQQIAFQPL 231
Query: 183 L--KDVLTLGLANPK---KYFIESRDNRFRAMAENFRFQPDGSLS 222
L + +T L K K F++S +RF A+ + GS S
Sbjct: 232 LAQEQAITSRLDVSKFQNKQFVQSFADRFLAVTQASNMNAYGSSS 276
>gi|114765258|ref|ZP_01444390.1| hypothetical protein 1100011001307_R2601_00475 [Pelagibaca
bermudensis HTCC2601]
gi|114542393|gb|EAU45421.1| hypothetical protein R2601_00475 [Roseovarius sp. HTCC2601]
Length = 274
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 78/159 (49%), Gaps = 7/159 (4%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
+ +P + E Y+ + I ++ +++ +D RL+S+ +KA+ L D + ++K+LESD
Sbjct: 27 IRNEPQHAREIAYFLDNIGNVENVEDLTEDYRLYSFVMKAYDLEDQIFGKAMMEKLLESD 86
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPK--VIQSDIQHKTIIQDYKQSHQH-----KE 134
++D +LVN+L +++ F + F P + + D K + D Q+ E
Sbjct: 87 INDSSALVNRLTDSRFKDFHNAMGFGPEGQGNLNTLDASWKAAVVDKYVDTQYVNGKGDE 146
Query: 135 EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSI 173
A+ FR+ INS + +D L ++ +F +
Sbjct: 147 NEAIGTVLEFRRKAGSINSAYDILRDSDLSEFFRTAFGL 185
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 4/189 (2%)
Query: 503 EVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFAN 562
E+ Y+ NI + + E+L + R+ +F++++ ++ Q + + ++ +SD+ D + N
Sbjct: 36 EIAYFLDNIGNVENVEDLTEDYRLYSFVMKAYDLEDQIFGKAMMEKLLESDINDSSALVN 95
Query: 563 TYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIA 622
D+R+K+ ++ F G+ + + +D D Q + K +E + I
Sbjct: 96 RLTDSRFKDFHNAMGFGPEGQGNLNTLDASWKAAVVDKYVD---TQYVNGKGDENEA-IG 151
Query: 623 LALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFK 682
L F+R +I + Y+IL DS L + L A + ++ I+ + +
Sbjct: 152 TVLEFRRKAGSINSAYDILRDSDLSEFFRTAFGLPEALAGIDIDRQAAIINDRLDLETLS 211
Query: 683 DSKKVEDFL 691
D V+D +
Sbjct: 212 DPDVVDDLV 220
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLG 190
QH E+A YF NI + +V+ L +D RL +V++++ + + ++ +L
Sbjct: 32 QHAREIA-----YFLDNIGNVENVEDLTEDYRLYSFVMKAYDLEDQIFGKAMMEKLLESD 86
Query: 191 LANPKKYFIESRDNRFRAMAENFRFQPD--GSLSKRDKILTDMQIEKIV-SNYFNNTIDC 247
+ + D+RF+ F P+ G+L+ D ++K V + Y N D
Sbjct: 87 INDSSALVNRLTDSRFKDFHNAMGFGPEGQGNLNTLDASWKAAVVDKYVDTQYVNGKGDE 146
Query: 248 VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITA 293
+ ++ S++S D L+D L + + + F L PE A
Sbjct: 147 NEAIGTVLEFRRKAGSINSAYDILRDSDLSEFFRTA-FGL-PEALA 190
>gi|326402279|ref|YP_004282360.1| hypothetical protein ACMV_01310 [Acidiphilium multivorum AIU301]
gi|325049140|dbj|BAJ79478.1| hypothetical protein ACMV_01310 [Acidiphilium multivorum AIU301]
Length = 303
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ ++ +T +N+ + ++LL N +L LL + G+ SQ + S+ DP
Sbjct: 82 QVQRDIAAFTKAVNSAKTAKQLLQNPTVLKVLLTANGLGSQVGFPALAQKALLSNPSDPN 141
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
AN + + ++ I+ + + K + +Q I + Y + + +++
Sbjct: 142 GLANQLSSTNSQWLSTA---QIY-QFATKGLSIIQKPSSISTLTNAYAEVLWRQSLDKQT 197
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKI 678
P ++ ALYF + N +ILGDS + VV+ L + A P + + + + +
Sbjct: 198 PGLSNALYFIQNAQKFTNATQILGDSVMRSVVTTALGVPQQIAFQPLLAQEQAITSRLDV 257
Query: 679 NDFKDSKKVEDF 690
+ F++ + V+ F
Sbjct: 258 SKFQNKQFVQSF 269
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 19/225 (8%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+KDIQ++ +K P V + + + + T + +++ + L A GL
Sbjct: 71 TKDIQAE-----AKSPQVQRDIAAFTKAVNSAKTAKQLLQNPTVLKVLLTANGLGSQVGF 125
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYF--ARSYDFSPPP-KVIQSDIQHKTIIQDYK 127
+K L S+ SDP L NQL+S Q+ A+ Y F+ +IQ T+ Y
Sbjct: 126 PALAQKALLSNPSDPNGLANQLSSTNSQWLSTAQIYQFATKGLSIIQKPSSISTLTNAYA 185
Query: 128 QSHQH----KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL-PF 182
+ K+ L + YF +N K + Q+ D + V + + P+ I+ P
Sbjct: 186 EVLWRQSLDKQTPGLSNALYFIQNAQKFTNATQILGDSVMRSVVTTALGV-PQQIAFQPL 244
Query: 183 L--KDVLTLGLANPK---KYFIESRDNRFRAMAENFRFQPDGSLS 222
L + +T L K K F++S +RF A+ + GS S
Sbjct: 245 LAQEQAITSRLDVSKFQNKQFVQSFADRFLAVTQASNMNAYGSSS 289
>gi|190894704|ref|YP_001984997.1| hypothetical protein RHECIAT_PC0000367 [Rhizobium etli CIAT 652]
gi|190700365|gb|ACE94447.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 193
Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
Y+ E I I+++D+F+ RL +Y L AFGLS + F K +L SDL D S VNQL+
Sbjct: 47 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 106
Query: 94 SLKYQYFARSYDFS 107
Y A++++F+
Sbjct: 107 DDVYVSLAKAFNFN 120
Score = 61.2 bits (147), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 143 YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESR 202
YF +NI I SVD RL +YVL +F ++ +Y S F KDVLT L + + +
Sbjct: 47 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 106
Query: 203 DNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
D+ + ++A+ F F DGS+ +L++ QI + S Y
Sbjct: 107 DDVYVSLAKAFNFNEDGSVD--GGLLSEDQISLVTSAY 142
Score = 51.2 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 506 YYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYK 565
Y+ NI +I S ++ L++ R+ N++L + G+ ++ F ++ SDL D SF N
Sbjct: 47 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 106
Query: 566 DNRYKEIISSFNFDIHGEL 584
D+ Y + +FNF+ G +
Sbjct: 107 DDVYVSLAKAFNFNEDGSV 125
Score = 45.1 bits (105), Expect = 0.046, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 395 FALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSI 450
+ L A+ L+ + ++VLTS+ D DS+ N+ DD + L AFNFN DGS+
Sbjct: 70 YVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLDDDVYVSLAKAFNFNEDGSV 125
>gi|218510514|ref|ZP_03508392.1| hypothetical protein RetlB5_25561 [Rhizobium etli Brasil 5]
Length = 112
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 143 YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESR 202
YF +NI I SVD RL +YVL +F ++ +Y S F KDVLT L + + +
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQFD 77
Query: 203 DNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVS 238
D+ + ++A+ F F DGS+ +L++ QI + S
Sbjct: 78 DDVYVSLAKAFNFNEDGSVDG--GLLSEDQISLVTS 111
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
Y+ E I I+++D+F+ RL +Y L AFGLS + F K +L SDL D S VNQ +
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQFD 77
Query: 94 SLKYQYFARSYDFSPPPKV 112
Y A++++F+ V
Sbjct: 78 DDVYVSLAKAFNFNEDGSV 96
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 506 YYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYK 565
Y+ NI +I S ++ L++ R+ N++L + G+ ++ F ++ SDL D SF N +
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQFD 77
Query: 566 DNRYKEIISSFNFDIHGELSHKKIGKVQ 593
D+ Y + +FNF+ G + + + Q
Sbjct: 78 DDVYVSLAKAFNFNEDGSVDGGLLSEDQ 105
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 395 FALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIP 454
+ L A+ L+ + ++VLTS+ D DS+ N+ DD + L AFNFN DGS+
Sbjct: 41 YVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQFDDDVYVSLAKAFNFNEDGSVDGGL 100
Query: 455 MMQSRLTI 462
+ + ++++
Sbjct: 101 LSEDQISL 108
>gi|310816824|ref|YP_003964788.1| flagellar protein, putative [Ketogulonicigenium vulgare Y25]
gi|308755559|gb|ADO43488.1| flagellar protein, putative [Ketogulonicigenium vulgare Y25]
Length = 262
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 15 QSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFI 74
Q+ +F+ + V+ Y+R+ I I T ++ + D+RL S AL AFGL D +A+ FI
Sbjct: 25 QTAVFAASGE---VAMNSTYFRDTIAKIQTPEDLLADRRLLSVALGAFGLQDDLNAKAFI 81
Query: 75 KKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK-TIIQDY 126
K++L D + N+L+ +Y A ++ F +D TI+ Y
Sbjct: 82 KRVLVEGTDDKTAFANKLSDKRYAALANAFGFGNEGGARTADAGFADTILARY 134
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 135 EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANP 194
EVA+ S YFR I KI + + L DRRLL L +F + + F+K VL G +
Sbjct: 34 EVAMN-STYFRDTIAKIQTPEDLLADRRLLSVALGAFGLQDDLNAKAFIKRVLVEGTDDK 92
Query: 195 KKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQ 254
+ + D R+ A+A F F +G D D + + + F + +
Sbjct: 93 TAFANKLSDKRYAALANAFGFGNEGGARTADAGFADTILARYTAESFE-----LAVGEQD 147
Query: 255 NYYKLAINSVSSFSDFLK 272
N +LA+N SD ++
Sbjct: 148 NTMRLALNLSGGISDVMQ 165
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 14/171 (8%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
E+ Y+ I I + E+LLA++R+L+ L + G+ + F+ + D
Sbjct: 34 EVAMNSTYFRDTIAKIQTPEDLLADRRLLSVALGAFGLQDDLNAKAFIKRVLVEGTDDKT 93
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+FAN D RY + ++F F G + D D Y + E E+D
Sbjct: 94 AFANKLSDKRYAALANAFGFGNEGG------ARTADAGFADTILARYTAESFELAVGEQD 147
Query: 619 PNIALALYFKRTIPNIRNH--------YEILGDSKLFKVVSKKLKLSPYFA 661
+ LAL I ++ H + ++GDS L V L F
Sbjct: 148 NTMRLALNLSGGISDVMQHATSDSAQWFAMMGDSPLRSVFETALGFPTGFG 198
>gi|218516824|ref|ZP_03513664.1| hypothetical protein Retl8_26089 [Rhizobium etli 8C-3]
Length = 164
Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
Y+ E I I+++D+F+ RL +Y L AFGLS + F K +L SDL D S VNQL+
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 77
Query: 94 SLKYQYFARSYDFS 107
Y A++++F+
Sbjct: 78 DDVYVSLAKAFNFN 91
Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 143 YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESR 202
YF +NI I SVD RL +YVL +F ++ +Y S F KDVLT L + + +
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 77
Query: 203 DNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
D+ + ++A+ F F DGS+ +L++ QI + S Y
Sbjct: 78 DDVYVSLAKAFNFNEDGSVD--GGLLSEDQISLVTSAY 113
Score = 50.4 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 44/79 (55%)
Query: 506 YYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYK 565
Y+ NI +I S ++ L++ R+ N++L + G+ ++ F ++ SDL D SF N
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 77
Query: 566 DNRYKEIISSFNFDIHGEL 584
D+ Y + +FNF+ G +
Sbjct: 78 DDVYVSLAKAFNFNEDGSV 96
Score = 44.7 bits (104), Expect = 0.061, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 395 FALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSI 450
+ L A+ L+ + ++VLTS+ D DS+ N+ DD + L AFNFN DGS+
Sbjct: 41 YVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLDDDVYVSLAKAFNFNEDGSV 96
>gi|126738585|ref|ZP_01754290.1| flagellar protein, putative [Roseobacter sp. SK209-2-6]
gi|126720384|gb|EBA17090.1| flagellar protein, putative [Roseobacter sp. SK209-2-6]
Length = 268
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%)
Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKIL 78
F S + E Y+ E I + T ++ IKD+RL S AL AFGL D + ++K+L
Sbjct: 26 FEVFSSGAAIERESDYFLENIGKVETAEDLIKDRRLLSVALGAFGLEDQIDMKALVQKVL 85
Query: 79 ESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQ 118
E S +L +L ++ F ++ F P D++
Sbjct: 86 EEGSSADDALATRLGDDRWVSFTDAFGFGPGESRKTGDLE 125
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/212 (19%), Positives = 92/212 (43%), Gaps = 26/212 (12%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
I E DY+ NI + + E+L+ ++R+L+ L + G++ Q + + ++ + +
Sbjct: 35 IERESDYFLENIGKVETAEDLIKDRRLLSVALGAFGLEDQIDMKALVQKVLEEGSSADDA 94
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
A D+R+ +F F G +K G ++ + D K Q E ++
Sbjct: 95 LATRLGDDRWVSFTDAFGF---GPGESRKTGDLE---AMKDVVFTNKTQSFETAVGNQEQ 148
Query: 620 NIALALYFKRTI------------PNIRNH-YEILGDSKLFKVVSKKLKLSPYFAVLPER 666
+ +ALY +R + P+I Y I+G +L ++ L L +
Sbjct: 149 TLRVALYAERELVPLVAEGEDGETPSINTQWYNIIGQPQLHSMMQTALGLPDSIGQVDVD 208
Query: 667 KKIRILKKHIK-------INDFKDSKKVEDFL 691
++++I ++ + +++F D +K+ + +
Sbjct: 209 QQVKIFREASERFFGSDDLSEFSDPEKMSNLI 240
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
ES YF +NI K+ + + L KDRRLL L +F + + ++ VL G +
Sbjct: 38 ESDYFLENIGKVETAEDLIKDRRLLSVALGAFGLEDQIDMKALVQKVLEEGSSADDALAT 97
Query: 200 ESRDNRFRAMAENFRFQPD-----GSL-SKRDKILTD--MQIEKIVSNYFNNTI------ 245
D+R+ + + F F P G L + +D + T+ E V N T+
Sbjct: 98 RLGDDRWVSFTDAFGFGPGESRKTGDLEAMKDVVFTNKTQSFETAVGNQ-EQTLRVALYA 156
Query: 246 --DCVPIVSD-QNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
+ VP+V++ ++ +IN + + + + P+L M+Q +L
Sbjct: 157 ERELVPLVAEGEDGETPSIN--TQWYNIIGQPQLHSMMQTAL 196
>gi|163733161|ref|ZP_02140605.1| flagellar protein, putative [Roseobacter litoralis Och 149]
gi|161393696|gb|EDQ18021.1| flagellar protein, putative [Roseobacter litoralis Och 149]
Length = 262
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKIL 78
F+ ++ ++ Y+ E+I ++T +E + D+RL AL AFGL D FIKK+L
Sbjct: 25 FAAFNQSSQLARAAEYFEEKISSVTTAEELVADRRLREVALGAFGLQDDIDNRFFIKKVL 84
Query: 79 ESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKV-IQSDIQHKTIIQDYK 127
E ++ SL N+ + +Y+ F+ ++ P ++ +Q + II Y+
Sbjct: 85 EEGTTNEDSLANRFSDSRYKDFSAAFGLGPGEQLKLQDTGFAQDIIAKYR 134
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 31/230 (13%)
Query: 477 HDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGI 536
+D++ +FN Q++ +Y+ I+++ + EEL+A++R+ L + G+
Sbjct: 21 YDSQFAAFNQSSQLA----------RAAEYFEEKISSVTTAEELVADRRLREVALGAFGL 70
Query: 537 DSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNF 596
F+ ++ + + S AN + D+RYK+ ++F +L K+QD
Sbjct: 71 QDDIDNRFFIKKVLEEGTTNEDSLANRFSDSRYKDFSAAFGLGPGEQL------KLQDTG 124
Query: 597 HIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFK 648
D Y+ E +D ++ +AL+ +R IP + + I+G L
Sbjct: 125 FAQDIIAKYRANSFEIATGSQDDSMRVALFAQREIPALATDDTSNDAKWFGIMGQPPLRA 184
Query: 649 VVSKKLKLSPYFAVLPERKKIRILKKHIK-------INDFKDSKKVEDFL 691
V K L L F + +++ + K+ + ++ F + V+D +
Sbjct: 185 VFEKALNLPSSFGQIDIDQQLVVFKERSRAVFGTDEVSQFAGDEAVQDLV 234
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%)
Query: 141 SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIE 200
++YF + I + + ++L DRRL + L +F + + F+K VL G N
Sbjct: 38 AEYFEEKISSVTTAEELVADRRLREVALGAFGLQDDIDNRFFIKKVLEEGTTNEDSLANR 97
Query: 201 SRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF 241
D+R++ + F P L +D I K +N F
Sbjct: 98 FSDSRYKDFSAAFGLGPGEQLKLQDTGFAQDIIAKYRANSF 138
>gi|163744335|ref|ZP_02151695.1| hypothetical protein OIHEL45_02090 [Oceanibulbus indolifex HEL-45]
gi|161381153|gb|EDQ05562.1| hypothetical protein OIHEL45_02090 [Oceanibulbus indolifex HEL-45]
Length = 277
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
V+ D + + + ++ERI I + EF+ D ++++ ++AF L D + I+K+LES+
Sbjct: 27 VANDALNARQIEAFKERIGDIKSAKEFVADTEVYTFVMRAFDLEDQIFGKAMIRKVLESN 86
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPP-------------KVIQSDIQHKTIIQDYKQ 128
+P +LVN+L++ K + + F+P +VI D + I+ +
Sbjct: 87 SDEPSALVNRLSNPKIKEMYDTLGFAPGGGRSFNFNRTGWQDEVI--DRFKERIVLNSAG 144
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+ALE F+ +INS + KD L ++ ++ + + I +
Sbjct: 145 EENEGARIALE----FKSKAGEINSWLDVLKDADLGSFMRRALGVPNEAIGV 192
>gi|126734100|ref|ZP_01749847.1| flagellar protein, putative [Roseobacter sp. CCS2]
gi|126716966|gb|EBA13830.1| flagellar protein, putative [Roseobacter sp. CCS2]
Length = 268
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
Y+RE I + T + + D++L S AL AFGL D + FI+KILE +L N+L
Sbjct: 41 YFRENIGDVRTASDLVNDRQLLSIALGAFGLDDDINNRAFIQKILEDGTVAQDALANRLA 100
Query: 94 SLKYQYFARSYDF--SPPPKVI 113
+Y F+ ++ F SP P+ +
Sbjct: 101 DNRYADFSAAFGFGDSPIPRTV 122
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 70/165 (42%), Gaps = 14/165 (8%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
I DY+ NI + + +L+ ++++L+ L + G+D F+ +I + +
Sbjct: 35 IQRATDYFRENIGDVRTASDLVNDRQLLSIALGAFGLDDDINNRAFIQKILEDGTVAQDA 94
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN DNRY + ++F F + +G+ + D ++ Q + E++
Sbjct: 95 LANRLADNRYADFSAAFGFG-DSPIPRTVLGRFP-----TEIIDRFEAQQFARAIGEQNN 148
Query: 620 NIALALYFKRTIPNI--------RNHYEILGDSKLFKVVSKKLKL 656
++ LA + +I + I+G++ L +V L L
Sbjct: 149 DMRLASNVNSGVADIVAGNATNTGRWFSIMGNAPLREVFQTALGL 193
>gi|260574408|ref|ZP_05842412.1| protein of unknown function DUF1217 [Rhodobacter sp. SW2]
gi|259023304|gb|EEW26596.1| protein of unknown function DUF1217 [Rhodobacter sp. SW2]
Length = 267
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 31 EERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVN 90
EE Y+R I I T + + D++L AL AFGL +++ FI+K+LE +L N
Sbjct: 38 EEEYFRANIGKIKTAEALVSDRKLLKVALGAFGLDADINSKAFIQKVLEGGTLKTGALAN 97
Query: 91 QLNSLKYQYFARSY---DFSPP 109
+L +YQ F+ + DF+ P
Sbjct: 98 KLADKQYQAFSAGFGFGDFATP 119
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 92/214 (42%), Gaps = 28/214 (13%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
+ST KR E +Y+ NI I + E L++++++L L + G+D+ + F+ ++
Sbjct: 32 VSTSKR-------EEEYFRANIGKIKTAEALVSDRKLLKVALGAFGLDADINSKAFIQKV 84
Query: 550 FKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQM 609
+ + AN D +Y+ + F F G+ + + Q + D+ YK++
Sbjct: 85 LEGGTLKTGALANKLADKQYQAFSAGFGF---GDFATP---RTQLSTFADEILTAYKNRQ 138
Query: 610 IEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFA 661
E E++ ++ LA+ +R + + + ++G L V K L A
Sbjct: 139 FETAVGEQNDDMRLAMNVERELVTLAGKSTTEDAKWFTVMGSKPLRAVFEKAFGLPSSLA 198
Query: 662 VLPERKKIRILK-------KHIKINDFKDSKKVE 688
L +++ + K ++ F D+ K++
Sbjct: 199 ALDLDQQLSVFKSAANKAFGATSVSQFADTTKLD 232
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
E +YFR NI KI + + L DR+LL L +F + S F++ VL G
Sbjct: 38 EEEYFRANIGKIKTAEALVSDRKLLKVALGAFGLDADINSKAFIQKVLEGGTLKTGALAN 97
Query: 200 ESRDNRFRAMAENFRF----QPDGSLSK-RDKILT 229
+ D +++A + F F P LS D+ILT
Sbjct: 98 KLADKQYQAFSAGFGFGDFATPRTQLSTFADEILT 132
>gi|85706198|ref|ZP_01037293.1| flagellar protein, putative [Roseovarius sp. 217]
gi|85669362|gb|EAQ24228.1| flagellar protein, putative [Roseovarius sp. 217]
Length = 267
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 15 QSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFI 74
QS LF+ K P + + Y+ + I I+T ++ + D+RL AL AFGL + + FI
Sbjct: 25 QSDLFN---KSPQIVRDTDYFEQTIGKITTAEDLVSDRRLLRVALGAFGLQEDIDSRAFI 81
Query: 75 KKILESDLSDPKSLVNQLNSLKYQYFARSYDFS--PPPKVIQSDIQHKTIIQDYKQSHQH 132
+ ILE + SL N+L +Y+ A ++ F+ P P+ Q T + + +
Sbjct: 82 RAILEGGTINEDSLANRLADDRYKQLAEAFAFADRPIPRT-----QLSTFGSEITEKFRR 136
Query: 133 KE-EVAL 138
+E EVA+
Sbjct: 137 REFEVAV 143
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
+I + DY+ I I + E+L++++R+L L + G+ F+ I + +
Sbjct: 34 QIVRDTDYFEQTIGKITTAEDLVSDRRLLRVALGAFGLQEDIDSRAFIRAILEGGTINED 93
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
S AN D+RYK++ +F F + + I + Q + + + ++ + E ++D
Sbjct: 94 SLANRLADDRYKQLAEAFAF------ADRPIPRTQLSTFGSEITEKFRRREFEVAVGDQD 147
Query: 619 PNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFA 661
++ LAL +R + +I + ILG++ L +V L L FA
Sbjct: 148 QSLRLALNARRELGDIAGDDAAEDTRWFRILGNTPLRRVFEVALGLPESFA 198
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 20/153 (13%)
Query: 138 LEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKY 197
+ ++ YF + I KI + + L DRRLL L +F + S F++ +L G N
Sbjct: 36 VRDTDYFEQTIGKITTAEDLVSDRRLLRVALGAFGLQEDIDSRAFIRAILEGGTINEDSL 95
Query: 198 FIESRDNRFRAMAENFRFQ----PDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSD 253
D+R++ +AE F F P LS +T EK F V D
Sbjct: 96 ANRLADDRYKQLAEAFAFADRPIPRTQLSTFGSEIT----EKFRRREFEVA------VGD 145
Query: 254 QNY-YKLAINSVSSFSDF-----LKDPKLFKML 280
Q+ +LA+N+ D +D + F++L
Sbjct: 146 QDQSLRLALNARRELGDIAGDDAAEDTRWFRIL 178
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 27/125 (21%)
Query: 335 QKMLDLYKKNCQILHDDKMQSLIKDY-QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
++ DL+ K+ QI+ D DY + +GKI + ++L+S + L
Sbjct: 23 ERQSDLFNKSPQIVRD-------TDYFEQTIGKITTAEDLVSDRR-------------LL 62
Query: 394 QFALDAYNLNMQDLD-RDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGP 452
+ AL A+ L +D+D R +R +L + DS AN+ DDR +L AF F AD P
Sbjct: 63 RVALGAFGLQ-EDIDSRAFIRAILEGGTINEDSLANRLADDRYKQLAEAFAF-AD---RP 117
Query: 453 IPMMQ 457
IP Q
Sbjct: 118 IPRTQ 122
>gi|294679038|ref|YP_003579653.1| flagellar protein [Rhodobacter capsulatus SB 1003]
gi|294477858|gb|ADE87246.1| flagellar protein, putative [Rhodobacter capsulatus SB 1003]
Length = 275
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 31 EERYYRERIKHISTIDEFIKDKRLFSYALKAFGL-SDMSHAEKFIKKILESDLSDPKSLV 89
+E Y+R +I I+T ++ + D+RL AL AFGL SD+ + + FI+K+LE+ D L
Sbjct: 38 DEDYFRAKIGSITTAEDLVSDRRLLKVALGAFGLDSDIDN-KFFIRKVLETAADDKTGLA 96
Query: 90 NQLNSLKYQYFARSYDFSPPP 110
N+L Y A ++ F P
Sbjct: 97 NKLADKTYLKLATAFGFGDTP 117
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 13/179 (7%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ME+ + +I + DY+ I +I + E+L++++R+L L + G+DS + F
Sbjct: 21 TMEKQKAAFAASADIKRDEDYFRAKIGSITTAEDLVSDRRLLKVALGAFGLDSDIDNKFF 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ ++ D AN D Y ++ ++F F G+ + Q + D+ Y
Sbjct: 81 IRKVLETAADDKTGLANKLADKTYLKLATAFGF---GDTPDAP--RTQTSGFADEILSKY 135
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNI--------RNHYEILGDSKLFKVVSKKLKL 656
+ + E E D + LA+ +R + + Y ++G L V+ L L
Sbjct: 136 ETRQFETAVGESDESYRLAMAAQRDLGELVASSSTNNAKWYSVIGSKSLSTVMRTALGL 194
>gi|84502363|ref|ZP_01000499.1| hypothetical protein OB2597_20146 [Oceanicola batsensis HTCC2597]
gi|84389175|gb|EAQ01972.1| hypothetical protein OB2597_20146 [Oceanicola batsensis HTCC2597]
Length = 274
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 97/209 (46%), Gaps = 8/209 (3%)
Query: 504 VDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANT 563
++++ NI + + ++LL ++ + F++ + ++ Q + + ++ KS++++ + N
Sbjct: 37 IEHFKANIKDVETVDQLLEDQELYAFVMRAFDLEDQIFGKAMIEKVLKSNIEENDALVNR 96
Query: 564 YKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIAL 623
D R++E+ + F GE + I N +D Y + EE++ + +
Sbjct: 97 LTDPRFREMYNELGFGTDGEGNLNTILNTWQNRMVDR----YVERQFINFTEEQNETVGI 152
Query: 624 ALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKD 683
AL F+ + +I + ++IL D+++ + L L + + K+ +L+ I ++ D
Sbjct: 153 ALEFRNKVGDINSVFDILKDNQMTRFFQTALGLPSQMSGIDIDKQAELLESKIDLDTLSD 212
Query: 684 ----SKKVEDFLYAAKAMDHQSIDYKKAL 708
K V ++ + A+ S AL
Sbjct: 213 PEVVDKLVRKYVAISDALSGTSTQSNGAL 241
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
+++ IK + T+D+ ++D+ L+++ ++AF L D + I+K+L+S++ + +LVN+L
Sbjct: 39 HFKANIKDVETVDQLLEDQELYAFVMRAFDLEDQIFGKAMIEKVLKSNIEENDALVNRLT 98
Query: 94 SLKYQYFARSYDFSPPPK----VIQSDIQHKTIIQ-------DYKQSHQHKEEVALEESK 142
+++ F + I + Q++ + + ++ + +ALE
Sbjct: 99 DPRFREMYNELGFGTDGEGNLNTILNTWQNRMVDRYVERQFINFTEEQNETVGIALE--- 155
Query: 143 YFRKNIHKINSVDQLFKDRRL 163
FR + INSV + KD ++
Sbjct: 156 -FRNKVGDINSVFDILKDNQM 175
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 127 KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+ S QHK + ++F+ NI + +VDQL +D+ L +V+++F + + ++ V
Sbjct: 28 RNSAQHKRAI-----EHFKANIKDVETVDQLLEDQELYAFVMRAFDLEDQIFGKAMIEKV 82
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGS------LSKRDKILTDMQIEKIVSNY 240
L + D RFR M F DG L+ + D +E+ N+
Sbjct: 83 LKSNIEENDALVNRLTDPRFREMYNELGFGTDGEGNLNTILNTWQNRMVDRYVERQFINF 142
Query: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
+ V I + ++ + ++S D LKD ++ + Q +L
Sbjct: 143 TEEQNETVGIALE---FRNKVGDINSVFDILKDNQMTRFFQTAL 183
>gi|99082811|ref|YP_614965.1| hypothetical protein TM1040_2971 [Ruegeria sp. TM1040]
gi|99039091|gb|ABF65703.1| conserved hypothetical protein [Ruegeria sp. TM1040]
Length = 650
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
Y+ E I +++ ++ + D+RL A+KAFGL + + +++ L S +L N +N
Sbjct: 41 YFAENIGEVTSSEDLLNDRRLLQVAVKAFGLEEEINYRALLQRALNEGTSASDALANTMN 100
Query: 94 SLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVA 137
+Y F+ ++ F P + SD + + D QS +E V
Sbjct: 101 DERYVEFSNAFGFGPGQSPMTSDSKAMQAVIDKFQSASFEEAVG 144
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Query: 505 DYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTY 564
+Y+ NI + S E+LL ++R+L +++ G++ + L + ANT
Sbjct: 40 EYFAENIGEVTSSEDLLNDRRLLQVAVKAFGLEEEINYRALLQRALNEGTSASDALANTM 99
Query: 565 KDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALA 624
D RY E ++F F + D+ + D ++ E+ E D + A
Sbjct: 100 NDERYVEFSNAFGF------GPGQSPMTSDSKAMQAVIDKFQSASFEEAVGEVDETMRTA 153
Query: 625 LYFKRTIPNI 634
L+ KR + +
Sbjct: 154 LFAKRAMIEV 163
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
+S+YF +NI ++ S + L DRRLL +++F + + L+ L G +
Sbjct: 38 DSEYFAENIGEVTSSEDLLNDRRLLQVAVKAFGLEEEINYRALLQRALNEGTSASDALAN 97
Query: 200 ESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
D R+ + F F P S D I+K S F + V
Sbjct: 98 TMNDERYVEFSNAFGFGPGQSPMTSDSKAMQAVIDKFQSASFEEAVGEV 146
>gi|125654647|ref|YP_001033841.1| flagellar basal-body rod protein FLGF [Rhodobacter sphaeroides
2.4.1]
gi|77386307|gb|ABA81736.1| possible flagellar basal-body ROD protein FLGF [Rhodobacter
sphaeroides 2.4.1]
Length = 262
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 28 VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKS 87
V E Y+ E+I + T ++ + D RL AL AFGL + + + I+K+L +D +
Sbjct: 35 VQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLNEGAADKGA 94
Query: 88 LVNQLNSLKYQYFARSYDF 106
L N+L+ ++ A+++DF
Sbjct: 95 LANRLSDKRWLALAKAFDF 113
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 69/181 (38%), Gaps = 14/181 (7%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ EV Y+ I T+ + E+L+++ R+L L + G+ + + ++ D
Sbjct: 34 QVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLNEGAADKG 93
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ AN D R+ + +F+F D Y+ Q E E D
Sbjct: 94 ALANRLSDKRWLALAKAFDF------GGASGAGTGTAGFADRIAGQYRTQSFEAAIGEVD 147
Query: 619 PNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR 670
N+ LAL + + + + +LG + L V L FA L +++
Sbjct: 148 ANLGLALTLDHEMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQVE 207
Query: 671 I 671
I
Sbjct: 208 I 208
>gi|126464886|ref|YP_001041862.1| hypothetical protein Rsph17029_4159 [Rhodobacter sphaeroides ATCC
17029]
gi|126106701|gb|ABN79226.1| protein of unknown function DUF1217 [Rhodobacter sphaeroides ATCC
17029]
Length = 262
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 28 VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKS 87
V E Y+ E+I + T ++ + D RL AL AFGL + + + I+K+L +D +
Sbjct: 35 VQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLGEGAADKGA 94
Query: 88 LVNQLNSLKYQYFARSYDF 106
L N+L+ ++ A+++DF
Sbjct: 95 LANRLSDKRWLALAKAFDF 113
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 14/181 (7%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ EV Y+ I T+ + E+L+++ R+L L + G+ + + ++ D
Sbjct: 34 QVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLGEGAADKG 93
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ AN D R+ + +F+F D Y+ Q E E D
Sbjct: 94 ALANRLSDKRWLALAKAFDF------GGTSGAGTGTAGFADRIAGQYRTQSFEAAIGEVD 147
Query: 619 PNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR 670
N+ LAL R + + + + +LG + L V L FA L +++
Sbjct: 148 ANLGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQVE 207
Query: 671 I 671
I
Sbjct: 208 I 208
>gi|221634512|ref|YP_002523200.1| hypothetical protein RSKD131_4487 [Rhodobacter sphaeroides KD131]
gi|221163385|gb|ACM04347.1| Hypothetical Protein RSKD131_4487 [Rhodobacter sphaeroides KD131]
Length = 262
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 28 VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKS 87
V E Y+ E+I + T ++ + D RL AL AFGL + + + I+K+L +D +
Sbjct: 35 VQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLGEGAADKGA 94
Query: 88 LVNQLNSLKYQYFARSYDF 106
L N+L+ ++ A+++DF
Sbjct: 95 LANRLSDKRWLALAKAFDF 113
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 14/181 (7%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ EV Y+ I T+ + E+L+++ R+L L + G+ + + ++ D
Sbjct: 34 QVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLGEGAADKG 93
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ AN D R+ + +F+F D Y+ Q E E D
Sbjct: 94 ALANRLSDKRWLALAKAFDF------GGASGAGTGTAGFADRIAGQYRTQSFEAAIGEVD 147
Query: 619 PNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR 670
N+ LAL R + + + + +LG + L V L FA L +++
Sbjct: 148 ANLGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQVE 207
Query: 671 I 671
I
Sbjct: 208 I 208
>gi|259417640|ref|ZP_05741559.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
gi|259346546|gb|EEW58360.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
Length = 650
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
Y+ E I +++ ++ + D+RL A+KAFGL + + +++ L S +L N +N
Sbjct: 41 YFAENIGGVTSSEDLLNDRRLLQVAVKAFGLEEEINYRALLQRALNEGTSASDALANTMN 100
Query: 94 SLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVA 137
+Y F+ ++ F P + SD + + D QS +E V
Sbjct: 101 DERYVEFSNAFGFGPGQSPMTSDSKAMQAVIDKFQSASFEEAVG 144
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 6/130 (4%)
Query: 505 DYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTY 564
+Y+ NI + S E+LL ++R+L +++ G++ + L + ANT
Sbjct: 40 EYFAENIGGVTSSEDLLNDRRLLQVAVKAFGLEEEINYRALLQRALNEGTSASDALANTM 99
Query: 565 KDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALA 624
D RY E ++F F + D+ + D ++ E+ E D + A
Sbjct: 100 NDERYVEFSNAFGF------GPGQSPMTSDSKAMQAVIDKFQSASFEEAVGEVDETMRTA 153
Query: 625 LYFKRTIPNI 634
L+ KR + +
Sbjct: 154 LFAKRAMIEV 163
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
+S+YF +NI + S + L DRRLL +++F + + L+ L G +
Sbjct: 38 DSEYFAENIGGVTSSEDLLNDRRLLQVAVKAFGLEEEINYRALLQRALNEGTSASDALAN 97
Query: 200 ESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
D R+ + F F P S D I+K S F + V
Sbjct: 98 TMNDERYVEFSNAFGFGPGQSPMTSDSKAMQAVIDKFQSASFEEAVGEV 146
>gi|332561334|ref|ZP_08415649.1| flagellar basal-body rod protein FLGF [Rhodobacter sphaeroides
WS8N]
gi|332274133|gb|EGJ19450.1| flagellar basal-body rod protein FLGF [Rhodobacter sphaeroides
WS8N]
Length = 262
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 28 VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKS 87
V E Y+ E+I + T ++ + D RL AL AFGL + + + I+K+L +D +
Sbjct: 35 VQREVAYFAEKIDTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLNEGAADKGA 94
Query: 88 LVNQLNSLKYQYFARSYDF 106
L N+L+ ++ A+++DF
Sbjct: 95 LANRLSDKRWLALAKAFDF 113
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 14/181 (7%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
++ EV Y+ I+T+ + E+L+++ R+L L + G+ + + ++ D
Sbjct: 34 QVQREVAYFAEKIDTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLNEGAADKG 93
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ AN D R+ + +F+F D Y+ Q E E D
Sbjct: 94 ALANRLSDKRWLALAKAFDF------GGASGAGTGTAGFADRIAGQYRTQSFEAAIGEVD 147
Query: 619 PNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR 670
N+ LAL R + + + + +LG + L V L FA L +++
Sbjct: 148 ANLGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQVE 207
Query: 671 I 671
I
Sbjct: 208 I 208
>gi|260432290|ref|ZP_05786261.1| putative flagellar protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260416118|gb|EEX09377.1| putative flagellar protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 265
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 26/193 (13%)
Query: 13 DIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEK 72
D Q + FS +++ E +Y+ E I+++ + ++ + D+RL AL AFGL
Sbjct: 23 DAQLQTFSASAEN---ERETQYFLENIRNVRSAEDLVSDRRLLRVALDAFGLEADLDNRY 79
Query: 73 FIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQH 132
FI+K+L +L N+L +Y+ F+ ++ P +++ +I D ++ Q
Sbjct: 80 FIQKVLSDGTKAEDALANRLADSRYREFSEAFGLGP------GEVRKTALITDMEKIAQK 133
Query: 133 K-----EEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKY---ISLPFLK 184
E E + R ++ +S+ +L + Q+ S T K+ +SLP L+
Sbjct: 134 GIVARFESAVGESDETMRIALYAQHSLRELAE---------QTGSETKKWYDLMSLPPLR 184
Query: 185 DVLTLGLANPKKY 197
++ L P +
Sbjct: 185 SMMETALGLPSSF 197
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 86/200 (43%), Gaps = 22/200 (11%)
Query: 503 EVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFAN 562
E Y+ NI + S E+L++++R+L L++ G+++ F+ ++ K + AN
Sbjct: 38 ETQYFLENIRNVRSAEDLVSDRRLLRVALDAFGLEADLDNRYFIQKVLSDGTKAEDALAN 97
Query: 563 TYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEE---EKDP 619
D+RY+E +F G+V+ I D + + ++ + E E D
Sbjct: 98 RLADSRYREFSEAFGLG---------PGEVRKTALITDMEKIAQKGIVARFESAVGESDE 148
Query: 620 NIALALYFK--------RTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRI 671
+ +ALY + +T + Y+++ L ++ L L F L K++ I
Sbjct: 149 TMRIALYAQHSLRELAEQTGSETKKWYDLMSLPPLRSMMETALGLPSSFGQLDIDKQLEI 208
Query: 672 LKKHIKINDFKDSKKVEDFL 691
+ K+ S+ + F+
Sbjct: 209 FRD--KLAGLTGSEDLSQFV 226
>gi|83955108|ref|ZP_00963764.1| hypothetical protein NAS141_03346 [Sulfitobacter sp. NAS-14.1]
gi|83840437|gb|EAP79610.1| hypothetical protein NAS141_03346 [Sulfitobacter sp. NAS-14.1]
Length = 274
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Query: 32 ERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQ 91
E +R RI IS+ +E I D ++S+ ++AF L D + I+K+LESD +P SL+N+
Sbjct: 37 EEAFRNRIGDISSPEELIADFEVYSFVMRAFDLEDQIFGKGLIRKMLESDPVEPSSLLNR 96
Query: 92 LNSLKYQYFARSYDFSP-----PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKY--- 143
L +++ + F+ P + D + + Y + + ++ + E
Sbjct: 97 LTDSRFREMHLALGFTTEAGPQTPDLTDPDFLNDVTTRFYNRQYINENDAQNETVGTVLE 156
Query: 144 FRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
FR IN+ ++ + +L ++ + S+ + +L
Sbjct: 157 FRDKFSGINNWFEVLANEKLTNFFQVALSLPEQMSAL 193
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 3/181 (1%)
Query: 511 INTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYK 570
I I S EEL+A+ + +F++ + ++ Q + + ++ +SD +P S N D+R++
Sbjct: 44 IGDISSPEELIADFEVYSFVMRAFDLEDQIFGKGLIRKMLESDPVEPSSLLNRLTDSRFR 103
Query: 571 EIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRT 630
E+ + F E + +F D T Y Q I + + + + + L F+
Sbjct: 104 EMHLALGFTT--EAGPQTPDLTDPDFLNDVTTRFYNRQYINENDAQNE-TVGTVLEFRDK 160
Query: 631 IPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDF 690
I N +E+L + KL L L + L K+ +L + D + E+
Sbjct: 161 FSGINNWFEVLANEKLTNFFQVALSLPEQMSALDLDKQKALLADKFDLEKLADPAERENL 220
Query: 691 L 691
+
Sbjct: 221 I 221
>gi|83944192|ref|ZP_00956648.1| hypothetical protein EE36_02633 [Sulfitobacter sp. EE-36]
gi|83845059|gb|EAP82940.1| hypothetical protein EE36_02633 [Sulfitobacter sp. EE-36]
Length = 274
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 32 ERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQ 91
E +R+RI IS+ +E I D ++S+ ++AF L D + I+K+LESD +P SL+N+
Sbjct: 37 EEAFRDRIGDISSPEELIADFEVYSFVMRAFDLEDQIFGKGLIRKMLESDPVEPSSLLNR 96
Query: 92 LNSLKYQYFARSYDFS 107
L +++ + F+
Sbjct: 97 LTDSRFREMHLALGFT 112
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 75/178 (42%), Gaps = 3/178 (1%)
Query: 511 INTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYK 570
I I S EEL+A+ + +F++ + ++ Q + + ++ +SD +P S N D+R++
Sbjct: 44 IGDISSPEELIADFEVYSFVMRAFDLEDQIFGKGLIRKMLESDPVEPSSLLNRLTDSRFR 103
Query: 571 EIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRT 630
E+ + F E + +F D T Y Q I + + + + + L F+
Sbjct: 104 EMHLALGFTT--EAGPQTPDLTDPDFLNDVTTRFYNRQYINENDAQNE-TVGTVLEFRDK 160
Query: 631 IPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVE 688
I N +E+L KL L L + L K+ +L + D + E
Sbjct: 161 FSGINNWFEVLASEKLTNFFQVALSLPEQMSALDLDKQKALLADKFDLEKLADPAERE 218
>gi|296531762|ref|ZP_06894584.1| possible flagellar protein [Roseomonas cervicalis ATCC 49957]
gi|296267901|gb|EFH13706.1| possible flagellar protein [Roseomonas cervicalis ATCC 49957]
Length = 389
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 2 IPSHVAPFPSKDIQSKL---FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYA 58
IP+ VA + K +Q K F +KDP++ + Y RE + T + + D+RL +
Sbjct: 10 IPTGVAGW--KLLQGKSPTDFKAFAKDPVLQRDLAYLRETLPTKLTAKDLLADRRLQTIV 67
Query: 59 LKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFS 107
LKA+GL + I+K+LES+ D S+ ++ +Y+ +R ++
Sbjct: 68 LKAYGLDGQIGYDALIRKVLESNPDDSNSVAGRMTDYRYRQISRDLNYG 116
>gi|218679039|ref|ZP_03526936.1| hypothetical protein RetlC8_09234 [Rhizobium etli CIAT 894]
Length = 264
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 38/217 (17%)
Query: 84 DPKSLVNQLNSLKYQYFARSYDFSPPPKVI---QSDIQHKTIIQDYKQSHQ--------- 131
DP S+VN KY+ A + F+ V Q+ Q ++I+ Y + Q
Sbjct: 1 DPSSVVNTQGGDKYKALAAQFSFNADGTVTGTAQTAAQKASVIETYTLNSQSVIIDNSVG 60
Query: 132 ----HKEEVALEESK-YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+ A E +K Y+ I I +VD L D+RL Y+ ++S+ + + L+ V
Sbjct: 61 SDVYYVGATAAEYNKAYYTAKIGTITNVDDLVADKRLTSYITTAYSMGADFTAAA-LRTV 119
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTID 246
LT +P + N + A F F+ DGS S ++ + Q K+ S
Sbjct: 120 LT----DPGYAQLMGFTNVYNA----FNFKADGSTSSTARVQSVDQANKLKS-------- 163
Query: 247 CVPIVSDQNYYKLAINS--VSSFSDFLKDPKLFKMLQ 281
S NYY + S +++ D L D + + ++
Sbjct: 164 --AASSTTNYYSVTSQSSAITNVDDLLADSVMARYIK 198
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 51/181 (28%)
Query: 422 DPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAEN 481
DP S N D+ L F+FNADG++ A +K S+ E
Sbjct: 1 DPSSVVNTQGGDKYKALAAQFSFNADGTV-------------TGTAQTAAQKASV--IET 45
Query: 482 KSFNSMEQISTQKRINLEINSEV------------DYYTLNINTIHSFEELLANKRILNF 529
+ NS I I+ + S+V YYT I TI + ++L+A+KR+ ++
Sbjct: 46 YTLNSQSVI-----IDNSVGSDVYYVGATAAEYNKAYYTAKIGTITNVDDLVADKRLTSY 100
Query: 530 LLESKGIDSQKVREDFLCEIFKSDLKDPK-----SFANTYKDNRYKEIISSFNFDIHGEL 584
+ + + + DF ++ L DP F N Y +FNF G
Sbjct: 101 ITTAYSMGA-----DFTAAALRTVLTDPGYAQLMGFTNVYN---------AFNFKADGST 146
Query: 585 S 585
S
Sbjct: 147 S 147
>gi|149203152|ref|ZP_01880123.1| flagellar protein, putative [Roseovarius sp. TM1035]
gi|149143698|gb|EDM31734.1| flagellar protein, putative [Roseovarius sp. TM1035]
Length = 267
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 15 QSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFI 74
Q+ LF+ K P + + Y+ + I I+T + + D+RL AL AFGL + ++ FI
Sbjct: 25 QTDLFN---KSPQIVRDTEYFEQNIAKITTAEGLVSDRRLLRVALGAFGLQEDINSRAFI 81
Query: 75 KKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPP 110
+ ILE ++ N+L +Y+ + ++ F+ P
Sbjct: 82 RAILEEGTIRDDAIANRLADDRYKQLSEAFAFADRP 117
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 14/171 (8%)
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
+I + +Y+ NI I + E L++++R+L L + G+ F+ I +
Sbjct: 34 QIVRDTEYFEQNIAKITTAEGLVSDRRLLRVALGAFGLQEDINSRAFIRAILEEGTIRDD 93
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
+ AN D+RYK++ +F F + + I + Q + + + ++ + E +++
Sbjct: 94 AIANRLADDRYKQLSEAFAF------ADRPIPRTQLSTFGTEITEKFRRREFEVAVGDQN 147
Query: 619 PNIALALYFKRTIPNIRNHYE--------ILGDSKLFKVVSKKLKLSPYFA 661
+ LAL +R + +I E ILG+ L +V L L F
Sbjct: 148 QALRLALNVQRELGDIAGDAETEDTRWFRILGNPPLRRVFEVALGLPDSFG 198
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 20/153 (13%)
Query: 138 LEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKY 197
+ +++YF +NI KI + + L DRRLL L +F + S F++ +L G
Sbjct: 36 VRDTEYFEQNIAKITTAEGLVSDRRLLRVALGAFGLQEDINSRAFIRAILEEGTIRDDAI 95
Query: 198 FIESRDNRFRAMAENFRFQ----PDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSD 253
D+R++ ++E F F P LS +T EK F V D
Sbjct: 96 ANRLADDRYKQLSEAFAFADRPIPRTQLSTFGTEIT----EKFRRREFEVA------VGD 145
Query: 254 QN-YYKLAINSVSSFSDF-----LKDPKLFKML 280
QN +LA+N D +D + F++L
Sbjct: 146 QNQALRLALNVQRELGDIAGDAETEDTRWFRIL 178
>gi|254509607|ref|ZP_05121674.1| flagellar protein, putative [Rhodobacteraceae bacterium KLH11]
gi|221533318|gb|EEE36306.1| flagellar protein, putative [Rhodobacteraceae bacterium KLH11]
Length = 265
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 88/200 (44%), Gaps = 21/200 (10%)
Query: 503 EVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFAN 562
E DY+ NI + S E+L++++R+L L + G+++ F+ +I + + AN
Sbjct: 38 ETDYFLENIGKVQSAEDLVSDRRLLQVALGAFGLEADLDNRFFIQKILSDGTQAEDALAN 97
Query: 563 TYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIA 622
D RY++ ++F G++ + + D+ + E E D ++
Sbjct: 98 RLADGRYRDFANAFGLG-PGDVRKTGLTNEMEKIASDNLVARF-----EISVGEADESMR 151
Query: 623 LALYFKRTIPNI--------RNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKK 674
+AL+ + + I R ++++G L ++ L L FA L K++ + +
Sbjct: 152 IALFTQHALQEIAAQDGSENRKWFDLMGLPPLRSMMETALGLPSAFAQLDIDKQLEVFRD 211
Query: 675 HIK-------INDFKDSKKV 687
++ ++ F DS+ +
Sbjct: 212 RLQRVTGSSDLSQFTDSEAI 231
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 31 EERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVN 90
E Y+ E I + + ++ + D+RL AL AFGL FI+KIL +L N
Sbjct: 38 ETDYFLENIGKVQSAEDLVSDRRLLQVALGAFGLEADLDNRFFIQKILSDGTQAEDALAN 97
Query: 91 QLNSLKYQYFARSYDFSP 108
+L +Y+ FA ++ P
Sbjct: 98 RLADGRYRDFANAFGLGP 115
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 123 IQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPF 182
+Q Y S+ ++ E + YF +NI K+ S + L DRRLL L +F + + F
Sbjct: 26 LQSYSASNVNQRE-----TDYFLENIGKVQSAEDLVSDRRLLQVALGAFGLEADLDNRFF 80
Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
++ +L+ G D R+R A F P R LT+ ++EKI S+
Sbjct: 81 IQKILSDGTQAEDALANRLADGRYRDFANAFGLGPG---DVRKTGLTN-EMEKIASD 133
>gi|218662936|ref|ZP_03518866.1| CTP synthetase [Rhizobium etli IE4771]
Length = 391
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 625 LYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDS 684
LYF+R P I + Y+ILGDS LF+ + LS Y + + K+ +++ I I D D
Sbjct: 282 LYFERKAPEISSAYDILGDSALFEFFTTSFNLSSYVSNMDVEKQAEMVENFIDIKDLSDP 341
Query: 685 KKVEDFLYAAKAM 697
KV+D + AM
Sbjct: 342 DKVDDLIKRFTAM 354
>gi|89069825|ref|ZP_01157160.1| flagellar protein, putative [Oceanicola granulosus HTCC2516]
gi|89044626|gb|EAR50742.1| flagellar protein, putative [Oceanicola granulosus HTCC2516]
Length = 264
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
F ++ ++ + + + PI E + RE++ I++ID+ + D++ L AFGL D
Sbjct: 17 FLARTLEVQQAAYAASAPIERATESF-REKVPQITSIDDLLDDRQAMQVVLGAFGLDDDI 75
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFS 107
+ F++K+LE P S +L+ +Y A + F
Sbjct: 76 DSAAFVRKVLEEGTVAPDSFAIRLSDKRYLQLADALGFG 114
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEII 573
I S ++LL +++ + +L + G+D F+ ++ + P SFA D RY ++
Sbjct: 49 ITSIDDLLDDRQAMQVVLGAFGLDDDIDSAAFVRKVLEEGTVAPDSFAIRLSDKRYLQLA 108
Query: 574 SSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPN 633
+ F G+L GK Q D Y+ + E+ E+D + +AL R +
Sbjct: 109 DALGF---GDLGGA--GKTQWLGFADVIVARYEARQFERAVGEQDEQLRIALSVSRGVEE 163
Query: 634 I--------RNHYEILGDSKLFKVVSKKLKLSPYFA 661
+ + I+G++ L V L S F
Sbjct: 164 VLQGQDGRTARWFAIMGNAPLRSVFETALGFSSSFG 199
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 141 SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIE 200
++ FR+ + +I S+D L DR+ + VL +F + S F++ VL G P + I
Sbjct: 39 TESFREKVPQITSIDDLLDDRQAMQVVLGAFGLDDDIDSAAFVRKVLEEGTVAPDSFAIR 98
Query: 201 SRDNRFRAMAENFRFQPDGSLSK 223
D R+ +A+ F G K
Sbjct: 99 LSDKRYLQLADALGFGDLGGAGK 121
>gi|58038542|ref|YP_190506.1| hypothetical protein GOX0053 [Gluconobacter oxydans 621H]
gi|58000956|gb|AAW59850.1| Hypothetical protein GOX0053 [Gluconobacter oxydans 621H]
Length = 273
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 118 QHKTIIQDYKQSHQHKEEVALEESKY---FRKNIHKINSVDQLFKDRRLLDYVLQSFSIT 174
Q+ +II+D S E+ ++ + F+K+ I + +QL K+ + L VL ++ ++
Sbjct: 13 QYVSIIKDEDSSANKWEKTSVSAQQAVTAFQKDAASIKTPEQLLKNYKALTVVLGAYGMS 72
Query: 175 PKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIE 234
LKD++T + K S ++ ++A A F L+ D ++
Sbjct: 73 SVIGQTAVLKDLMTQDPTSSKSLAQTSGNSAWKAFANAFSDWSTSPLASSDT------VQ 126
Query: 235 KIVSNYFNNTID-----CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQL 282
I +Y N+ + P + D Y+ + + ++ + DPKL K+ ++
Sbjct: 127 SITQSYLTNSYEDSLQTETPGLGDALYFTRTATTDMTLANVMADPKLLKVAEV 179
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Query: 35 YRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNS 94
+++ I T ++ +K+ + + L A+G+S + +K ++ D + KSL +
Sbjct: 42 FQKDAASIKTPEQLLKNYKALTVVLGAYGMSSVIGQTAVLKDLMTQDPTSSKSLAQTSGN 101
Query: 95 LKYQYFARSY-DFSPPPKVIQSDIQHKT---IIQDYKQSHQHKEEVALEESKYFRKNIHK 150
++ FA ++ D+S P +Q T + Y+ S Q E L ++ YF +
Sbjct: 102 SAWKAFANAFSDWSTSPLASSDTVQSITQSYLTNSYEDSLQ-TETPGLGDALYFTRTATT 160
Query: 151 INSVDQLFKDRRLL 164
++ + D +LL
Sbjct: 161 DMTLANVMADPKLL 174
>gi|218512422|ref|ZP_03509262.1| hypothetical protein Retl8_01379 [Rhizobium etli 8C-3]
Length = 249
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
Query: 317 NFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQ---------LPLG 365
NF D S + + +Q Q Q D Y D+ ++ + +Y L
Sbjct: 77 NFAADGSLPAVSSVQTADQAQTTNDNYMARYDDERDEAIEEVADNYSSMMADSTSLLDTA 136
Query: 366 KIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDS 425
+IK++++ L + S ++ AL A+ L Q++ R +R +LTS+ DP+
Sbjct: 137 EIKTVNDFLRTNAAADFKKSNDKLPDPYHVALQAFGLTDQEVPRSMMRKILTSDAYDPNG 196
Query: 426 YANKSKDDRLIKLNHAFNFNA 446
Y KD+R+ L AF A
Sbjct: 197 YIASLKDERITNLARAFQLRA 217
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 35/228 (15%)
Query: 359 DYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTS 418
DY + I ++D L++ +P IT F YNL D+ +L+++LT
Sbjct: 15 DYSSRMATIANVDELIA------------DPAIT-NFLKSTYNLPF-DISDAELKSILT- 59
Query: 419 NPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSR---LTIRDN--VKHYANRK 473
D + A D LN FNF ADGS+ + +Q+ T DN ++ R
Sbjct: 60 ---DATAAAAAGHAD----LNADFNFAADGSLPAVSSVQTADQAQTTNDNYMARYDDERD 112
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI---LNFL 530
+I + + +++SM ST EI + D+ L N F++ +N ++ +
Sbjct: 113 EAIEEVAD-NYSSMMADSTSLLDTAEIKTVNDF--LRTNAAADFKK--SNDKLPDPYHVA 167
Query: 531 LESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNF 578
L++ G+ Q+V + +I SD DP + + KD R + +F
Sbjct: 168 LQAFGLTDQEVPRSMMRKILTSDAYDPNGYIASLKDERITNLARAFQL 215
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 55 FSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPP 109
+ AL+AFGL+D ++KIL SD DP + L + AR++ P
Sbjct: 164 YHVALQAFGLTDQEVPRSMMRKILTSDAYDPNGYIASLKDERITNLARAFQLRAP 218
>gi|114800299|ref|YP_758998.1| putative flagellar protein [Hyphomonas neptunium ATCC 15444]
gi|114740473|gb|ABI78598.1| putative flagellar protein [Hyphomonas neptunium ATCC 15444]
Length = 282
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 17 KLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKK 76
K + + P V + Y E+ ++++F+KD RL + AF L+ + FIKK
Sbjct: 24 KQLESYTNSPQVRNDRDYMIEKFAQPISVEDFLKDSRLVRVTMTAFDLAGEEWKKGFIKK 83
Query: 77 ILESDLSDPKS-LVNQLNSLKYQYFARS 103
LE ++SDP+S + +LN+ KY A +
Sbjct: 84 TLE-EVSDPESTFLARLNNPKYTALANA 110
>gi|162147451|ref|YP_001601912.1| hypothetical protein GDI_1667 [Gluconacetobacter diazotrophicus PAl
5]
gi|209545560|ref|YP_002277789.1| hypothetical protein Gdia_3449 [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786028|emb|CAP55610.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533237|gb|ACI53174.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 281
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 82/197 (41%), Gaps = 5/197 (2%)
Query: 497 NLEINSEVDYYTLNINTIHSFEELLANKRIL--NFLLESKGIDSQKVREDFLCEIFKSDL 554
N I +EV + + ++I S +L++NK +L + + S + ++ D
Sbjct: 32 NPTIQNEVTSFEESASSITSAADLMSNKNYTAEQVVLGAYNLSSISGETALVKDLLTQDP 91
Query: 555 KDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKE 614
KS A + + + +F+ G+ + I ++ E
Sbjct: 92 TSSKSVAKSSGNATWLAFADAFS--TWGQNGGSASASPFTSDTISSIVTKFEESQYESST 149
Query: 615 EEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSP-YFAVLPERKKIRILK 673
++ + ALYF R + + + +I+ ++ L KVV +P F L +++R+L+
Sbjct: 150 ANQNSGVGNALYFTRNMTSSMSLADIMSNATLLKVVETVSGFNPDQFGALDYPEQVRLLQ 209
Query: 674 KHIKINDFKDSKKVEDF 690
+ ++DF + V+ +
Sbjct: 210 NKVDLSDFSTPEGVQKY 226
>gi|218677561|ref|ZP_03525458.1| hypothetical protein RetlC8_01365 [Rhizobium etli CIAT 894]
Length = 251
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 94/240 (39%), Gaps = 39/240 (16%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
YY+ I IS +D+ + D RL ++ AFG+ +D++ L +Q
Sbjct: 41 YYQATIAGISNVDQLLTDSRLNNFVRNAFGIPST-----------VTDVNLRAILTDQSG 89
Query: 94 SLKYQYFARSYDFSPPPKVIQS-DIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKIN 152
+ Y A +++F + Q T I+D K + + + + + I
Sbjct: 90 TGTYADVAAAFNFKADGTLKDGMAAQTATQIRDTKFAASTRTD-------DYSARMSTIG 142
Query: 153 SVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAEN 212
+VD L D + +++ ++++ P IS LK +LT A + + +
Sbjct: 143 NVDDLLADDAITNFLKSTYNL-PTGISNADLKSILTDATAAAAAGHAD--------LNAD 193
Query: 213 FRFQPDGSLSKRDKILTDMQIEKIVSNYF-------NNTIDCVPIVSDQNYYKLAINSVS 265
F F DGSL + T Q + NY + ID V NY K+ +S S
Sbjct: 194 FNFAADGSLPVVSSVQTADQAQTTNDNYMARYDDERDEAIDEVA----SNYSKMMADSSS 249
>gi|328469147|gb|EGF40093.1| hypothetical protein VP10329_09681 [Vibrio parahaemolyticus 10329]
Length = 559
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 311 KYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSI 370
K F + D SS T D IQ M L + + D + S + D+ +G ++
Sbjct: 236 KPFAESAAQSDVSSQTTTLFDEAIQNMGQLQVVDVSEISPDTLFSEVTDHATNIGTEDTV 295
Query: 371 DNLLSG--KCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
DNLL C L+ A+ +TL+ L AY + D D L V+T N
Sbjct: 296 DNLLGALESCHLQS-GQAKLVKVTLEGGLQAYLGGISDDTADALPPVVTEN 345
>gi|260899848|ref|ZP_05908243.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308107291|gb|EFO44831.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
Length = 1976
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 311 KYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSI 370
K F + D SS T D IQ M L + + D + S + D+ +G ++
Sbjct: 236 KPFAESAAQSDASSQTTTLFDEAIQNMGQLQVVDVSEISPDTLFSEVTDHATNIGTEDTV 295
Query: 371 DNLLSG--KCQLEGPNSAEEPII--TLQFALDAYNLNMQDLDRDQLRNVLTSN 419
DNLL C L+ S + ++ TL+ L AY + D D L V+T N
Sbjct: 296 DNLLGALESCHLQ---SGQAKLVKVTLEGGLQAYLGGISDDTADALPPVVTEN 345
>gi|182419225|ref|ZP_02950478.1| transcriptional regulator [Clostridium butyricum 5521]
gi|237668888|ref|ZP_04528872.1| alanine racemase [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182376865|gb|EDT74436.1| transcriptional regulator [Clostridium butyricum 5521]
gi|237657236|gb|EEP54792.1| alanine racemase [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 337
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 193 NPKKYFIESRDNRFRAMAENFRFQPDG---SLSKRDKILTDMQIEKIVSNYFNNTIDCVP 249
N Y E NR A+ + + P SLSKR+ + + I ++YF I +
Sbjct: 24 NGSGYVKEETKNRIEAVIKELNYTPSAIARSLSKRETNAIGVIVPDITNSYFGEVIKGIS 83
Query: 250 IVSDQNYYKLAI-NSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKF 296
V+D+N + N+ +SF ++ L K ++ + P AD F
Sbjct: 84 QVADKNNLNIIFYNTENSFEKEIRALNLLKEQRIKGIIMTPGFGADDF 131
>gi|170034350|ref|XP_001845037.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167875670|gb|EDS39053.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 1093
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ +H P+ + + + T+ D + E+ E I H + + +K LFSYA
Sbjct: 76 VANHHQDVPTAEANTTMLGTMEADAVEDLYEKVLME-IVHGNINRSDVSEKALFSYAQDV 134
Query: 62 FGLSDMSHAEKFIKK--------------ILESDLSDPKSLVNQLNSLKYQYFARSYDFS 107
F +++ +H E+ +KK ++E+ L++ ++ LN+ Y
Sbjct: 135 FNMNEKAH-EEILKKARVKPASEVHLRVELVEAKLTERATVTGALNAFVIMYLQTGL--- 190
Query: 108 PPPKVIQSDIQHKT 121
P V++S IQ T
Sbjct: 191 --PDVVRSTIQENT 202
>gi|123965518|ref|YP_001010599.1| peptidyl-tRNA hydrolase [Prochlorococcus marinus str. MIT 9515]
gi|166229435|sp|A2BUN1|PTH_PROM5 RecName: Full=Peptidyl-tRNA hydrolase; Short=PTH
gi|123199884|gb|ABM71492.1| Peptidyl-tRNA hydrolase [Prochlorococcus marinus str. MIT 9515]
Length = 199
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKI---LTDMQIEKIV---- 237
+V +GL NP K +I+SR N + E F + D + ++K+ T+ +I +
Sbjct: 5 EVFIIGLGNPGKQYIKSRHNIGFLLLETFSKKYDAQFTLKNKLKSRYTEFKINDSIYKLF 64
Query: 238 --SNYFNNTIDCVPIVSDQNYYKLAINSV 264
Y NN+ D V + D +YK++++ V
Sbjct: 65 MPHTYMNNSGDAVKAIVD--WYKISLDKV 91
Searching..................................................done
Results from round 2
>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040686|gb|ACT57482.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 750
Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats.
Identities = 750/750 (100%), Positives = 750/750 (100%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK
Sbjct: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK
Sbjct: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL
Sbjct: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY
Sbjct: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
Query: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM 300
FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM
Sbjct: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM 300
Query: 301 QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY 360
QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY
Sbjct: 301 QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY 360
Query: 361 QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP 420
QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP
Sbjct: 361 QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP 420
Query: 421 SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE 480
SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE
Sbjct: 421 SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE 480
Query: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540
NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK
Sbjct: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540
Query: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600
VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD
Sbjct: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600
Query: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660
TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF
Sbjct: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660
Query: 661 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN 720
AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN
Sbjct: 661 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN 720
Query: 721 NSFDDPQNNVSLQLSPQKKSNGRFSILNLF 750
NSFDDPQNNVSLQLSPQKKSNGRFSILNLF
Sbjct: 721 NSFDDPQNNVSLQLSPQKKSNGRFSILNLF 750
>gi|315122487|ref|YP_004062976.1| hypothetical protein CKC_03695 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495889|gb|ADR52488.1| hypothetical protein CKC_03695 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 757
Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats.
Identities = 423/758 (55%), Positives = 547/758 (72%), Gaps = 20/758 (2%)
Query: 1 MIPSHVAP--FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYA 58
MI + S + K +T+SKDPIVS EE+YYRE+IK IST++EFI DKRL +Y
Sbjct: 11 MISTASISNLILSDKVYKKSIATISKDPIVSREEKYYREKIKKISTVEEFINDKRLLNYV 70
Query: 59 LKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQ 118
LKAF LSDMSHA+ F++KIL SDLS P+SLVN++NS KYQ FA +DFSP PK IQ+ IQ
Sbjct: 71 LKAFDLSDMSHAKTFLQKILTSDLSVPESLVNKMNSKKYQTFASQFDFSPAPKSIQTTIQ 130
Query: 119 HKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYI 178
K +I+DY S++ KE+ ALEESKYFR+NI+ I SVDQL K+RRL++Y LQSF I P+YI
Sbjct: 131 QKKVIEDYITSYKRKEKDALEESKYFRQNINNITSVDQLIKNRRLVNYALQSFGINPQYI 190
Query: 179 SLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVS 238
SL FLK+ LT L + K+ ++N A+A+NFRFQ +GS +DKILT+MQIE +V
Sbjct: 191 SLSFLKESLTSELDHTKQ--KTPKENLLHALADNFRFQSNGSPIHKDKILTNMQIENMVH 248
Query: 239 NYFNNTIDCVP---IVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADK 295
NYF++TI VP I SDQ YY+ +INS+ SF LKDPKL+K+LQ+SL L+P++T +
Sbjct: 249 NYFSHTIMSVPEEVIFSDQKYYRSSINSIPSFEQLLKDPKLYKILQISL-SLDPKVTENN 307
Query: 296 FLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQS 355
FL L++ NDP + QVK FFQI++ D +S IQ QI K+L LY+ NC+ L K++S
Sbjct: 308 FLKLIKNNDPSIVQVKKFFQIDYAGDINSRPAIQTKKQIDKLLFLYQTNCKKLRSQKIES 367
Query: 356 LIKDYQLPL-GKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRN 414
LI++Y+ + G IKS+D L+ K + ++ +PI L+FAL AY + DL++ +LR+
Sbjct: 368 LIENYKKDISGDIKSVDQFLNMKPKSYISSNKSQPITPLEFALQAYGIKKNDLNKYRLRD 427
Query: 415 VLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKR 474
+L S+ SD SY N+ KD+R I L+HAFNFN G IG + QS+LT+RDNV +Y K+
Sbjct: 428 ILISDSSDSKSYVNQLKDNRFINLHHAFNFNKKGEIGFNRLTQSKLTLRDNVMNYIGYKK 487
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S++ ENK F+S + I RI + + EV+YYT NI TIHSF +LLANKRILNFLLESK
Sbjct: 488 SLY-NENKIFSSAQNI----RIKKDTDKEVEYYTSNIQTIHSFNDLLANKRILNFLLESK 542
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
ID +KV+ FL +IFKSDL + KS ANTYKD+RYKEI+ SFNFDIHG S++ GKVQD
Sbjct: 543 EIDPKKVKNSFLEKIFKSDLNNTKSLANTYKDSRYKEIMLSFNFDIHGTKSNENTGKVQD 602
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
NFHID DLYK+Q+++KKEEEKDP++AL LYFKRTIP I+N Y+ILGD LF+V+SKKL
Sbjct: 603 NFHIDHVVDLYKNQILQKKEEEKDPDVALLLYFKRTIPTIKNIYDILGDKNLFQVISKKL 662
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSS--P 712
+LSP+F LPE KI ILKK I I DFKD KK+E+FLYA +QS +K AL + P
Sbjct: 663 RLSPHFPSLPESTKIHILKKLINIKDFKDPKKLENFLYAVNVNHYQSTTHKIALTLAFFP 722
Query: 713 NQNKDPWNNSFDDPQNNVSLQLSPQKKSNGRFSILNLF 750
KD S DD + N+SLQLSP KK NG+FSILNLF
Sbjct: 723 PLEKD----SMDDHEKNISLQLSPNKKENGKFSILNLF 756
Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats.
Identities = 113/588 (19%), Positives = 229/588 (38%), Gaps = 89/588 (15%)
Query: 99 YFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLF 158
A + +S S++ + + K+ + E KY+R+ I KI++V++
Sbjct: 2 SLANVWSYSMISTASISNLILSDKVYKKSIATISKDPIVSREEKYYREKIKKISTVEEFI 61
Query: 159 KDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPD 218
D+RLL+YVL++F ++ + FL+ +LT L+ P+ + +++ A F F P
Sbjct: 62 NDKRLLNYVLKAFDLSDMSHAKTFLQKILTSDLSVPESLVNKMNSKKYQTFASQFDFSP- 120
Query: 219 GSLSKRDKILTDMQIEKIVSNYFNN-TIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLF 277
I T +Q +K++ +Y + + + Y++ IN+++S +K+ +L
Sbjct: 121 ----APKSIQTTIQQKKVIEDYITSYKRKEKDALEESKYFRQNINNITSVDQLIKNRRLV 176
Query: 278 KMLQLSLFPLNPEITADKFLTLMQENDPIVSQVK---------YFFQINFHRDNSS--ST 326
L F +NP+ + FL ++ ++ K F + S
Sbjct: 177 NY-ALQSFGINPQYISLSFLKESLTSELDHTKQKTPKENLLHALADNFRFQSNGSPIHKD 235
Query: 327 KIQQDSQIQKMLDLYKKNCQILHDDKM-QSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNS 385
KI + QI+ M+ Y + + +++ S K Y+ + I S + LL
Sbjct: 236 KILTNMQIENMVHNYFSHTIMSVPEEVIFSDQKYYRSSINSIPSFEQLLKDPK------- 288
Query: 386 AEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFN 445
+ + +L+ + + + L+ + K+ D ++++ F +
Sbjct: 289 ------LYKILQISLSLDPKVTENNFLKLI-------------KNNDPSIVQVKKFFQID 329
Query: 446 ADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVD 505
G I P +Q++ I + Y + + + +I S ++
Sbjct: 330 YAGDINSRPAIQTKKQIDKLLFLYQTNCKKL-------------------RSQKIESLIE 370
Query: 506 YYTLNI-NTIHSFEELLANK-------------RILNFLLESKGIDSQKVREDFLCEIFK 551
Y +I I S ++ L K L F L++ GI + + L +I
Sbjct: 371 NYKKDISGDIKSVDQFLNMKPKSYISSNKSQPITPLEFALQAYGIKKNDLNKYRLRDILI 430
Query: 552 SDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCD-------L 604
SD D KS+ N KDNR+ + +FNF+ GE+ ++ + D+ + L
Sbjct: 431 SDSSDSKSYVNQLKDNRFINLHHAFNFNKKGEIGFNRLTQS-KLTLRDNVMNYIGYKKSL 489
Query: 605 YKHQMIEKKEEE---KDPNIALALYFKRTIPNIRNHYEILGDSKLFKV 649
Y I + K Y+ I I + ++L + ++
Sbjct: 490 YNENKIFSSAQNIRIKKDTDKEVEYYTSNIQTIHSFNDLLANKRILNF 537
>gi|15889789|ref|NP_355470.1| hypothetical protein Atu2524 [Agrobacterium tumefaciens str. C58]
gi|15157715|gb|AAK88255.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 774
Score = 567 bits (1462), Expect = e-159, Method: Composition-based stats.
Identities = 219/773 (28%), Positives = 366/773 (47%), Gaps = 87/773 (11%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+P++ V+ DPI+S + +YY + I + ++D F+KD +L+SYA+K
Sbjct: 1 MLPAYTTYALYNRNMESSLKRVANDPIISRDAKYYADNIGKVKSLDAFLKDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP--PPKVIQSDIQ 118
A GL +M++A F+KK+LES+L DP S VN+L +Y+ FA ++DF K +Q+ Q
Sbjct: 61 AHGLEEMTYATAFMKKVLESNLKDPNSFVNKLKDTRYRDFAAAFDFGTIKTEKTVQTKSQ 120
Query: 119 HKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYI 178
++ Y + + + E EE++Y+ I K+ VD +FK+ RL +YV +SF I P+
Sbjct: 121 QDRLVTAYHDTDKQRNEEQKEETRYYNIVIDKVGQVDDIFKNTRLRNYVFKSFGIDPQTF 180
Query: 179 SLPFLKDVLTLGLANPKKYFIES------------------------------------- 201
LK VLT ++ Y +
Sbjct: 181 DYQHLKGVLTSDISKADSYVNSTYKPLLEEWQAKIADLRDQRTKIPSTDKTSLEKNDYLI 240
Query: 202 --------RDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF--NNTIDCVPIV 251
+ +A F F+ DG ++ K T +Q NY N + +
Sbjct: 241 NQYNKRINGAAKLFELAATFNFRADGLVNDGTKAQTAVQKRLTNENYVLANPRVTQTGAI 300
Query: 252 SDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQEN--DPIVSQ 309
+++++ A+ V+ + +L ML ++ + T K ++EN DP
Sbjct: 301 LNRDFFVQAMKDVTDAGQLTANSRLRTMLIVAFNLEDNSGTDQKIQWALRENPADPQSGL 360
Query: 310 --------VKYFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKD 359
+ NF D ++ +Q D Q+ +++LY + + IKD
Sbjct: 361 YREKDKGFIDLAKAFNFGTDGKVAAGKAVQSDGQLSTIMNLYFSRYDDKQEAADEKTIKD 420
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
Y+ +G K++D+ LS +A + FAL A+N+ ++ +L+ V TS+
Sbjct: 421 YRRYIGLTKNLDDFLS---------AAPAAVAIRNFALKAFNIGTEESSTFKLKKVFTSD 471
Query: 420 PSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDA 479
S+P SY KDDR ++L AFNF+A G IG Q+ I ++Y
Sbjct: 472 LSNPKSYVYTLKDDRFLRLAKAFNFDAQGKIGSPRFAQAENEIARISRNY---------- 521
Query: 480 ENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQ 539
+ + K+I + EV YY + T+ + ++LLA++R+L+F+L ++ ID +
Sbjct: 522 ----LKEVTRWDKDKKIREKGEKEVGYYREKMGTLETADQLLADRRLLDFMLVAERIDPK 577
Query: 540 KVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHID 599
+ D+L +IFKSDLKDPKSFANT KD R++ + SFNFD G +S +Q+N +
Sbjct: 578 SITTDYLKKIFKSDLKDPKSFANTEKDPRFRALAGSFNFDAKGNISATTRQPIQNNRSLM 637
Query: 600 DTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPY 659
+T D Y Q +E++ E++ + LALYFKR I + Y+IL D L +V L +
Sbjct: 638 ETRDKYVRQKLEERAGEENSGVRLALYFKRMAGGISSAYDILADKALSEVTRTALGIPAE 697
Query: 660 FAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM---DHQSIDYKKALF 709
A + ++++K +KI D +D KKVE + ++ D + ALF
Sbjct: 698 TANAKVDAQAKMIEKRLKIKDLQDPKKVEKLVNRFLMTFEANNSGSDPRIALF 750
>gi|325293876|ref|YP_004279740.1| hypothetical protein AGROH133_08567 [Agrobacterium sp. H13-3]
gi|325061729|gb|ADY65420.1| hypothetical protein AGROH133_08567 [Agrobacterium sp. H13-3]
Length = 775
Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats.
Identities = 224/776 (28%), Positives = 373/776 (48%), Gaps = 89/776 (11%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
++P++ ++D++ L V+ DP+VS + +YY + I + +D F+KD RL+SYA+
Sbjct: 2 VLPAYTTYALYNRDMELSL-KRVANDPVVSRDAKYYADNIGTVKNLDAFLKDFRLYSYAM 60
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP--PPKVIQSDI 117
KA GL +M +A F+KK+LES+L+DP S N+L +Y+ FA S+DF K +Q+
Sbjct: 61 KAHGLEEMIYATAFMKKVLESNLNDPNSFANKLKDTRYRDFAASFDFGTIKAEKSVQTKS 120
Query: 118 QHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKY 177
Q +I Y + + + EE++++ I K+ VD +FK+ R+ DY+ +SF I P+
Sbjct: 121 QQDRLIATYHATIEQEGAELKEETRFYNIAIEKVGHVDDIFKNTRVRDYIFKSFGIDPET 180
Query: 178 ISLPFLKDVLTLGLANPKKYFIES------------------------------------ 201
S +K+VLT ++N Y ++
Sbjct: 181 FSYKHVKNVLTSDISNADSYINKTYKSLIPEWKAKAADLRIERAGVASTDKPALAKIDYL 240
Query: 202 ---------RDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF--NNTIDCVPI 250
N+ MA F F+ DG + T Q I Y N +
Sbjct: 241 ISQYNKRINDANKLFEMAAAFNFRDDGRVDDGMPAQTAAQRRLINETYVLSNPRLTQAGA 300
Query: 251 VSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE--NDP--- 305
V ++ Y+ + +++ S + +L ML +S + + T K + + NDP
Sbjct: 301 VLNREYFVDKMKTITEASQMTQFARLRTMLIVSFNLTDNDETDKKIGWAVLQDPNDPQSP 360
Query: 306 -----IVSQVKYFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIK 358
V NF D + Q Q+ M++LY + + IK
Sbjct: 361 IHKEKDKGLVDLARAFNFGADGKIKTGKVAQTAEQLNTMMNLYFSRYDDKDEAADEKAIK 420
Query: 359 DYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTS 418
+YQ +G K++++ LS +A+ +I FAL A+++ ++ L+ V TS
Sbjct: 421 NYQRYIGLTKNLEDFLS---------NAQGAVIIRNFALKAFDITAEEASSFTLKRVFTS 471
Query: 419 NPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHD 478
+ SDP SY KD+R ++L AFNF+A+G IG + QS I ++Y
Sbjct: 472 DLSDPKSYVYTLKDERFVRLAKAFNFDAEGKIGSPRLAQSENEITRISRNY--------- 522
Query: 479 AENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDS 538
+ + K++ + EV YY + TI + ++LL+++R+L+F+L ++ ID
Sbjct: 523 -----LKEVTRWDKDKKVREKGEKEVAYYRQKMETIETVDQLLSDRRLLDFMLIAQRIDP 577
Query: 539 QKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHI 598
+ V D+L +IFKSDLKDPKSFANT KD R++ + SFNFD G + K VQ+ +
Sbjct: 578 KTVTTDYLKKIFKSDLKDPKSFANTEKDARFRALAGSFNFDAKGNIVAKAGQSVQNTRSL 637
Query: 599 DDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSP 658
+T D Y Q +E++ E++ + LALYFKR +I N Y+IL D+ L + L +
Sbjct: 638 METRDKYVRQTLEQRVGEENSGVRLALYFKRMAASISNPYDILADNALAEFTRTALGIPA 697
Query: 659 YFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM---DHQSIDYKKALFSS 711
A + ++++K +KI D +D KKVE + ++ + D + ALF S
Sbjct: 698 ETANSKVDAQAKMIEKKLKIKDLQDPKKVEKLVNRFLLTFEANNATSDPRLALFGS 753
>gi|327192290|gb|EGE59255.1| hypothetical protein RHECNPAF_2330071 [Rhizobium etli CNPAF512]
Length = 773
Score = 564 bits (1453), Expect = e-158, Method: Composition-based stats.
Identities = 207/735 (28%), Positives = 358/735 (48%), Gaps = 31/735 (4%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
++ ++V+ S S V+ V+ + YY++ I ++T+DEF+ D +L+SYA+K
Sbjct: 47 LVSTYVSYLAVARNLSTSLSNVASQATVARDSAYYKDNIGKVTTVDEFMGDYKLYSYAMK 106
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ FS K QSD+Q
Sbjct: 107 AYGLEDMTYAKAFMKKVLESDLSDSSSFANSLSDSRYAEFAAAFKFSGETKTAQSDVQRD 166
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
++ Y+ S + + + +E+ YF +NI I SVD RL YVL +F ++ +Y S
Sbjct: 167 NLLDAYEASFETEADTIEDETDYFEENIASITSVDDFLSSSRLKSYVLTAFGLSTEYTSS 226
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FLKDVLT L + + + D+ + ++A+ F F DGS+ ++++ QI + S Y
Sbjct: 227 SFLKDVLTSDLDDADSFVNQLDDDVYVSLAKAFNFNEDGSVD--GDLMSEDQISLVTSAY 284
Query: 241 FNNTIDCVPIVSDQN---YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
+ + + Y+ I +++S + D KL L+ + + E +D F+
Sbjct: 285 AVASATIASTQTGEAYDSYFAAEIGNITSVDQLMSDDKLVSYLRTAYGLTDDE--SDTFI 342
Query: 298 TLMQENDPIVSQVK---YFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL-HDD 351
+ ++ I + NF D + Q Q + +N Q+L +
Sbjct: 343 SAALKSADIAEAIGLSDLHDAFNFDEDGALADGDSAQTSDQTAATTAAFDENYQVLIANT 402
Query: 352 KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
+ + +Y + + SID+ L + ++ + P + AL A+ ++ + + Q
Sbjct: 403 DTEVAVDNYTTRIASVTSIDDFLVSNADDDDDDNDDLPE-MWEMALRAFGIDPDSVSKSQ 461
Query: 412 LRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN 471
+R +L S+P+D SY N DDR + AFNF++DG + S + D +Y
Sbjct: 462 VRKILESDPTDSKSYVNSLNDDRFVAFRKAFNFDSDGDVTVPLQAMSESVVDDYAAYYKQ 521
Query: 472 RKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLL 531
K D + + + E+ Y+ + TI + E LA+ R+++F+L
Sbjct: 522 NKIRYLDGDELT-----------EATDAADDEITYFREQMATITTASEFLADDRLVSFVL 570
Query: 532 ESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGK 591
E+KG+D V D L ++F SDL D S+ N DNR+ E++ +FNFD G +S + G+
Sbjct: 571 EAKGLDPDDVTSDQLKKMFSSDLDDEDSYVNKLDDNRFAELVGAFNFDQDGNISAEPTGE 630
Query: 592 VQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVS 651
VQ + +T D Y +E ++ + + + LALYF+R I + Y+ILGDS LF+ +
Sbjct: 631 VQQRGDVLETVDAYVRLTLEDEQGDSNTGVRLALYFQRKASEISSAYDILGDSALFEFFT 690
Query: 652 KKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM------DHQSIDYK 705
+S Y + + K+ +++ I I D D KV+D + AM +
Sbjct: 691 TSFNISSYVSNMDVDKQAEMVENFIDIKDLSDPDKVDDLIKRFTAMYDMANGTGTTSTAL 750
Query: 706 KALFSSPNQNKDPWN 720
L S + D
Sbjct: 751 SILTGSAAISADTLL 765
Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats.
Identities = 53/298 (17%), Positives = 111/298 (37%), Gaps = 32/298 (10%)
Query: 443 NFNADGSIGPIPMMQSRLTIRDNVKHYANRKR-----SIHDAENKSFNSMEQISTQKRIN 497
+F+ DG + + + R R S + + ++ +
Sbjct: 12 SFSRDGRRLSRGTAAPSKSAKRVADLHKTRVRGQALVSTYVSYLAVARNLSTSLSNVASQ 71
Query: 498 LEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDP 557
+ + YY NI + + +E + + ++ ++ +++ G++ + F+ ++ +SDL D
Sbjct: 72 ATVARDSAYYKDNIGKVTTVDEFMGDYKLYSYAMKAYGLEDMTYAKAFMKKVLESDLSDS 131
Query: 558 KSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEK 617
SFAN+ D+RY E ++F F Q + D+ D Y+ + + +
Sbjct: 132 SSFANSLSDSRYAEFAAAFKFSGE-------TKTAQSDVQRDNLLDAYEASFETEADTIE 184
Query: 618 DPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIK 677
D YF+ I +I + + L S+L V LS + K +L +
Sbjct: 185 DETD----YFEENIASITSVDDFLSSSRLKSYVLTAFGLSTEYTSSSFLK--DVLTSDLD 238
Query: 678 INDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQNNVSLQLS 735
D ++ D +L + N N+D + ++ +SL S
Sbjct: 239 DAD--------------SFVNQLDDDVYVSLAKAFNFNEDGSVDGDLMSEDQISLVTS 282
>gi|209547533|ref|YP_002279451.1| hypothetical protein Rleg2_5534 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538777|gb|ACI58711.1| protein of unknown function DUF1217 [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 738
Score = 560 bits (1443), Expect = e-157, Method: Composition-based stats.
Identities = 209/735 (28%), Positives = 352/735 (47%), Gaps = 31/735 (4%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
++ ++V+ + S+V+ VS + YY+E I ++T+DEF+ D +L+SYA+K
Sbjct: 12 LVSTYVSYLAVARNLNASLSSVASQGTVSRDSAYYKENIGKVTTVDEFMGDYKLYSYAMK 71
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ F K QSD+Q +
Sbjct: 72 AYGLDDMTYAKAFMKKVLESDLSDSSSFANSLSDGRYAEFAAAFKFGGETKTAQSDVQRE 131
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
T++ Y+ S + E +E+ YF +NI I SVD RL +Y L +F ++ Y S
Sbjct: 132 TLLDAYESSFDTEAEDIADETDYFEENISSITSVDDFLSSSRLKNYALTAFGLSTDYTSS 191
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FLK VLT L + + + D+ + ++A+ F F DGS ++++ QI + S Y
Sbjct: 192 SFLKQVLTSDLDDSDSFVNQLGDDVYVSLAKAFNFNEDGSTD--GDVMSEDQISLVTSGY 249
Query: 241 F---NNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
+ + Y+ I +++S + D KL L+++ + E +D F+
Sbjct: 250 AVASSTVASSDTGEAYDTYFAAEIGNITSVDQLMNDDKLVGYLRIAYGLTDDE--SDTFI 307
Query: 298 TLMQENDPIVSQVK---YFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL-HDD 351
+ ++ I + NF D + Q Q + +N Q+L +
Sbjct: 308 SAALKSADIADAIGLSDLHDAFNFDEDGALADGDTAQTSEQTATTTAAFDENYQVLIANT 367
Query: 352 KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
+ + +Y + + SID+ L + + + P + AL A++++ + R Q
Sbjct: 368 DSEDAVDNYTTRIASVTSIDDFLVSNADDDVDGNDDLPE-MWEMALRAFDIDPDSVSRSQ 426
Query: 412 LRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN 471
+R +L S+P+D SY N DDR + AFNF++DG + S + D +Y
Sbjct: 427 VRKILESDPTDSKSYVNSLDDDRFVAFRKAFNFDSDGDVTVPLQAMSESVVDDYAAYYKQ 486
Query: 472 RKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLL 531
K D ++ + + E+ Y+ + TI + E LA+ R+++ L
Sbjct: 487 NKIRYLDGDDLT-----------EATDAADDEISYFREQMATITTASEFLADDRLVSLAL 535
Query: 532 ESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGK 591
E+KG+D V D L ++F SDL D S+ N D+R+ E++ SFNFD G +S G
Sbjct: 536 EAKGLDPDDVTSDQLKKMFSSDLDDEDSYVNKLDDSRFAELVGSFNFDQDGNISADPTGT 595
Query: 592 VQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVS 651
VQ + +T D Y +E + + + + LALYF+R P I + Y ILGDS LF+ +
Sbjct: 596 VQQRGDVLETIDSYVRLTLEDDQGDSNTGVRLALYFQRKAPEISSAYGILGDSALFQFFT 655
Query: 652 KKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM------DHQSIDYK 705
LS Y + + K+ ++ I I D D KV+D + AM +
Sbjct: 656 TTFNLSSYVSNMDVDKQAEMVNNFIDIKDLADPDKVDDLIKRFTAMYDVANGTGTTSSAL 715
Query: 706 KALFSSPNQNKDPWN 720
L S + + D
Sbjct: 716 SILTGSASISADTLL 730
Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 27/244 (11%)
Query: 492 TQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFK 551
+ ++ + YY NI + + +E + + ++ ++ +++ G+D + F+ ++ +
Sbjct: 31 SSVASQGTVSRDSAYYKENIGKVTTVDEFMGDYKLYSYAMKAYGLDDMTYAKAFMKKVLE 90
Query: 552 SDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIE 611
SDL D SFAN+ D RY E ++F F Q + + D Y+
Sbjct: 91 SDLSDSSSFANSLSDGRYAEFAAAFKFGGE-------TKTAQSDVQRETLLDAYESSFDT 143
Query: 612 KKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRI 671
+ E+ D YF+ I +I + + L S+L LS + K++
Sbjct: 144 EAEDIADETD----YFEENISSITSVDDFLSSSRLKNYALTAFGLSTDYTSSSFLKQVLT 199
Query: 672 LKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQNNVS 731
+D DS ++ D +L + N N+D + ++ +S
Sbjct: 200 -------SDLDDSD---------SFVNQLGDDVYVSLAKAFNFNEDGSTDGDVMSEDQIS 243
Query: 732 LQLS 735
L S
Sbjct: 244 LVTS 247
>gi|307309365|ref|ZP_07589028.1| protein of unknown function DUF1217 [Sinorhizobium meliloti BL225C]
gi|307320101|ref|ZP_07599522.1| protein of unknown function DUF1217 [Sinorhizobium meliloti AK83]
gi|306894316|gb|EFN25081.1| protein of unknown function DUF1217 [Sinorhizobium meliloti AK83]
gi|306900234|gb|EFN30852.1| protein of unknown function DUF1217 [Sinorhizobium meliloti BL225C]
Length = 769
Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats.
Identities = 200/796 (25%), Positives = 346/796 (43%), Gaps = 106/796 (13%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ +++ VS+ IV+ + +YYRE I ++++DEF+ D RL+SYA+K
Sbjct: 1 MVSTYLDYNLIARDMKLSLRRVSEQTIVARDTQYYRENIGSVASVDEFLADYRLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL+DM + F++K+LESDLSD S N+L +Y+ F ++ FS V Q++ Q
Sbjct: 61 AYGLADMIESVAFMRKVLESDLSDDNSFANKLTDERYRDFTMAFSFSGGTAVSQTEAQLD 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I Y S E EE++Y+ I K+ SVDQL + RL YV F I S
Sbjct: 121 EMIGLYNTSIASIGETQKEETRYYNVMIDKVTSVDQLLNNDRLRTYVFTVFGIDESTYSR 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNR----------------------------------- 205
L+ VL+ +P Y + R
Sbjct: 181 ETLRKVLSSNADDPDSYENTVLEPRLSELEAARADAQAKLQQSGTTQAEKLELQAKIATY 240
Query: 206 ---------FRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF--NNTIDCVPIVSDQ 254
+ AMA F+F+ DG+++ T + + Y N+ + + ++
Sbjct: 241 NKSISTVSNYLAMAAAFQFEADGTVAAGS-AQTAAHKKTMNELYVSSNSRVTPQAALLNK 299
Query: 255 NYYKLAINSVSSFSDFLKDPKLFKMLQLSL---------------FPLNPEITADKFLTL 299
Y++ I S+++ S+ + D +L+ ++ + +P+ T+
Sbjct: 300 AYFEEKIASITTVSELVADTRLYNYIRTAFDLNEVTIVPATIKNILTSDPDDPNSYINTI 359
Query: 300 MQENDPIVSQVKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLI 357
+ N+ + + F NF D + + Q Q Y D + I
Sbjct: 360 GKGNENYKALARAF---NFQADGTLAAGDAAQTAEQTTLTSSRYMTRYNDKDDAADEKAI 416
Query: 358 KDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLT 417
Y+L + K+ S+ + + E FAL A L+ ++ VLT
Sbjct: 417 GAYKLAVEKMTSVSDFI-------------ETASIYDFALQAVGLDPDSESARTIKRVLT 463
Query: 418 SNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIH 477
S+ +DP+S+ KD+R +KL FNF G IG + QS I++ K Y K
Sbjct: 464 SDLTDPESFVYTLKDERYLKLAQLFNFTTSGDIGVPALAQSETLIQETAKTYIVNKSRFG 523
Query: 478 DAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGID 537
E+K+ + +E +YYT + + S +E LA+ R+++F LE+ GID
Sbjct: 524 SEEDKT---------------KAEAEAEYYTAEVAKLSSLDEFLADSRLVDFALEANGID 568
Query: 538 SQKVREDFLCEIFKSDLKDPKSFANTYKDNR-YKEIISSFNFDIHGELSHKKIGKVQDNF 596
+ V DFL +IF SDL DPKSF N +++ Y +++SFNFD G + + +
Sbjct: 569 PENVTLDFLRDIFTSDLDDPKSFINQQQNSGAYIALVTSFNFDSGGNVLREDKSVIITRQ 628
Query: 597 HIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKL 656
+ +T D Y HQ +E++ E + + LALYF+R ++ + Y++L D L +V L
Sbjct: 629 GLYETLDRYLHQSLEEQAGEDNAGVRLALYFERQAGSLVDAYDLLADDALAEVFRTIFSL 688
Query: 657 SPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNK 716
F+ + ++ +I++K++ + D +++ L + N
Sbjct: 689 PDEFSSMDIDQQAKIVEKNLDLEKLSDPAELKKLLARFTVLYDLEN----------NMEV 738
Query: 717 DPWNNSFDDPQNNVSL 732
DP +N+ +
Sbjct: 739 DPAVVVLSGSGSNIGI 754
>gi|15964619|ref|NP_384972.1| hypothetical protein SMc00986 [Sinorhizobium meliloti 1021]
gi|15073797|emb|CAC45438.1| Hypothetical protein SMc00986 [Sinorhizobium meliloti 1021]
Length = 769
Score = 548 bits (1412), Expect = e-153, Method: Composition-based stats.
Identities = 199/796 (25%), Positives = 344/796 (43%), Gaps = 106/796 (13%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ +++ VS+ IV+ + +YYRE I ++++DEF+ D RL SYA+K
Sbjct: 1 MVSTYLDYNLIARDMKLSLRRVSEQTIVARDTQYYRENIGSVASVDEFLADYRLHSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL+DM + F++K+LESDLSD S N+L +Y+ F ++ FS V Q++ Q
Sbjct: 61 AYGLADMIESVAFMRKVLESDLSDDNSFANKLTDERYRDFTMAFSFSGGTAVSQTEAQLD 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I Y S E EE++Y+ I K+ SVDQL + RL YV F I S
Sbjct: 121 EMIGLYNTSIASIGETQKEETRYYNVMIDKVTSVDQLLNNDRLRTYVFTVFGIDESTYSR 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNR----------------------------------- 205
L+ VL+ +P Y + R
Sbjct: 181 ETLRKVLSSNADDPDSYENTVLEPRLSELEAARADAQAKLQQSGTTQAEKLELQAKIATY 240
Query: 206 ---------FRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF--NNTIDCVPIVSDQ 254
+ AMA F+F+ DG+++ T + + Y N+ + + ++
Sbjct: 241 NKSISTVSNYLAMAAAFQFEADGTVAAGS-AQTAAHKKTMNELYVSSNSRVTPQAALLNK 299
Query: 255 NYYKLAINSVSSFSDFLKDPKLFKMLQLSL---------------FPLNPEITADKFLTL 299
++ I S+++ S+ + D +L+ ++ + +P+ T+
Sbjct: 300 ADFEEKIASITTVSELVADTRLYNYIRTAFDLNEVTIVPATIKNILTSDPDDPNSYINTI 359
Query: 300 MQENDPIVSQVKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLI 357
+ N+ + + F NF D + + Q Q Y D + I
Sbjct: 360 GKGNENYKALARAF---NFQADGTLAAGDAAQTAEQTTLTSSRYMTRYNDKDDAADEKAI 416
Query: 358 KDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLT 417
Y+L + K+ S+ + + E FAL A L+ ++ VLT
Sbjct: 417 GAYKLAVEKMTSVSDFI-------------ETASIYDFALQAVGLDPDSESARTIKRVLT 463
Query: 418 SNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIH 477
S+ +DP+S+ KD+R +KL FNF G IG + QS I++ K Y K
Sbjct: 464 SDLTDPESFVYTLKDERYLKLAQLFNFTTSGDIGVPALAQSETLIQETAKTYIVNKSRFG 523
Query: 478 DAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGID 537
E+K+ + +E +YYT + + S +E LA+ R+++F LE+ GID
Sbjct: 524 SEEDKT---------------KAEAEAEYYTAEVAKLSSLDEFLADSRLVDFALEANGID 568
Query: 538 SQKVREDFLCEIFKSDLKDPKSFANTYKDNR-YKEIISSFNFDIHGELSHKKIGKVQDNF 596
+ V DFL +IF SDL DPKSF N +++ Y +++SFNFD G + + +
Sbjct: 569 PENVTLDFLRDIFTSDLDDPKSFINQQQNSGAYIALVTSFNFDSGGNVLREDKSVIITRQ 628
Query: 597 HIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKL 656
+ +T D Y HQ +E++ E + + LALYF+R ++ + Y++L D L +V L
Sbjct: 629 GLYETLDRYLHQSLEEQAGEDNAGVRLALYFERQAGSLVDAYDLLADDALAEVFRTIFSL 688
Query: 657 SPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNK 716
F+ + ++ +I++K++ + D +++ L + N
Sbjct: 689 PDEFSSMDIDQQAKIVEKNLDLEKLSDPAELKKLLARFTVLYDLEN----------NMEV 738
Query: 717 DPWNNSFDDPQNNVSL 732
DP +N+ +
Sbjct: 739 DPAVVVLSGSGSNIGI 754
>gi|86360899|ref|YP_472786.1| hypothetical protein RHE_PF00168 [Rhizobium etli CFN 42]
gi|86285001|gb|ABC94059.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 727
Score = 545 bits (1403), Expect = e-152, Method: Composition-based stats.
Identities = 209/706 (29%), Positives = 354/706 (50%), Gaps = 25/706 (3%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ ++V+ + S+V+ V+ + YY+E I ++T+DEF+ D +L+SYA+K
Sbjct: 1 MVSTYVSYLAVARNLNASLSSVASQATVARDSAYYKENIDKVTTVDEFMGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ F+ K QSD Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLSDSSSFANSLSDGRYAEFAAAFKFAGETKTAQSDEQRD 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+++ Y+ S + E +E+ YF +NI I SVD L RL +YVL +F ++ +Y S
Sbjct: 121 SLLDAYEDSFDTEAENIEDETDYFEENISSITSVDDLLSSSRLKNYVLTAFGLSTEYTST 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FLKDVLT L + + + + D+ + ++A+ F DGS ++++ Q+ + S Y
Sbjct: 181 SFLKDVLTSDLDDSESFVNQLDDDVYVSLAKAFNVSEDGSTD--GDVMSEDQLSLVTSAY 238
Query: 241 FNNT---IDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
+ + Y+ I +++S + D KL L+ + + E D F+
Sbjct: 239 AVASSTLASTETGEAYDTYFAAQIGNITSVDQLMSDDKLVSYLRTAYGLSDTET--DNFI 296
Query: 298 TLMQENDPIVSQVK---YFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL-HDD 351
+ ++ I + NF D + Q Q + +N Q+L +
Sbjct: 297 SAALKSADIADAIGLSDLHDAFNFDEDGALADGETAQTSEQTAATTAAFDENYQVLIANT 356
Query: 352 KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
+ + + +Y + I SID+ L + ++ + P + AL A+ ++ ++ + +
Sbjct: 357 ETEDAVDNYTTRIASITSIDDFLVSNADDDDDDNDDLPE-LWEMALRAFGIDSGEVSKSE 415
Query: 412 LRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN 471
+R +L S+P DP SY N KDDR +AFNF++DG + S + D +Y
Sbjct: 416 VRKILESDPGDPKSYVNSLKDDRFEAFRNAFNFDSDGDVTVPLQAMSESVVDDYAAYYKQ 475
Query: 472 RKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLL 531
K + + + + E++Y+ + TI S E LA+ R++ F L
Sbjct: 476 NKIRYLEGDELT-----------EATDAADEEIEYFRDQMATITSASEFLADDRLVAFAL 524
Query: 532 ESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGK 591
E+KG+D + V D L +IF SDL D S+ N +D+R+ E++ SFNFD G +S G
Sbjct: 525 EAKGLDPEDVTSDDLEKIFSSDLDDEDSYVNKLEDSRFAELVGSFNFDRDGNISADPTGT 584
Query: 592 VQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVS 651
VQ + +T D Y +E + + + + LALYF+R P I + Y+ILGDS LF+ +
Sbjct: 585 VQQRGDVLETVDAYVRLTLEDDQGDSNTGVRLALYFEREAPEISSAYDILGDSALFEFFT 644
Query: 652 KKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
LS Y + + K+ +++ I I D D KV+D + AM
Sbjct: 645 TSFNLSSYVSNMDVDKQAEMIENFIDIKDLADPDKVDDLIKRFTAM 690
>gi|222147731|ref|YP_002548688.1| hypothetical protein Avi_0969 [Agrobacterium vitis S4]
gi|221734719|gb|ACM35682.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 727
Score = 543 bits (1398), Expect = e-152, Method: Composition-based stats.
Identities = 212/720 (29%), Positives = 354/720 (49%), Gaps = 42/720 (5%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ +++ VS++P V+ E++YY+E I + T+D+F+ D RL+ Y +K
Sbjct: 1 MVSTYIGYDLVNRDMKASLKRVSQEPEVAREQKYYQENIGKVKTVDDFMNDDRLYQYTMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A GL DM++A+ F+KK+LESDLSD S N+L +Y+ FARS++FS IQ+D Q +
Sbjct: 61 ANGLEDMTYAKAFMKKVLESDLSDEDSYANKLADDRYRDFARSFNFSAETADIQTDKQEE 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I YKQS + + A EE +Y+ I K+ +VD L K+ RL +VL+S+ + KY S
Sbjct: 121 DVIGLYKQSLVTEGDDAKEEVQYYDSAIDKVTNVDDLLKNSRLTKFVLESYGLDTKYYST 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNR--FRAMAENFRFQPDGSLSKRDKILTDMQ--IEKI 236
LK VLT + + Y N+ + +A+ F F DGSL +D + +E +
Sbjct: 181 DHLKKVLTSDVNDSTSYVNTLTTNKSDYVNIAKAFSFNTDGSLKNATAQTSDQKTAMEDL 240
Query: 237 VSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFP---------- 286
+T + YYK I +V+ SD D +LF ++ +L
Sbjct: 241 YLEEVPSTETAYQAEREAAYYKEKIATVTKASDITGDSRLFSYVKTALGMDKNTLKSTFE 300
Query: 287 ---LNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
+ A+ + + +++ F + N+++ Q ++Q+ + Y
Sbjct: 301 NIVTSDLNDANSYANTQGKVKGEYAKIAAMFNFD-TSGNATAGNAQSETQLSQTATAYMT 359
Query: 344 NCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLN 403
N + SL Y + I +D+LL + + AY +
Sbjct: 360 NYDDEDQANLSSLTTYYSTQMKSITKVDDLLGNEK-------------IYDMVMKAYGIE 406
Query: 404 MQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIR 463
+ + L+ VLTS+ +DP SYANK++D+RLI L AFNF DG+ + QS TI
Sbjct: 407 TDEFSKADLKKVLTSDMNDPKSYANKTRDERLISLASAFNFKEDGTADVPLLAQSERTIT 466
Query: 464 DNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLAN 523
+ K Y +K + + Q + YY NI + S +LL +
Sbjct: 467 EVAKDYIVQKTRFLEGKE-----------QTDAKTAAEEDSKYYQENIVKVSSVTDLLKD 515
Query: 524 KRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGE 583
+++++F L ++G+D + V +D L ++F SDL DPKSFANT D Y + ++S+NFD G+
Sbjct: 516 RKLVDFALTAQGLDPKDVSDDMLKQLFSSDLTDPKSFANTQADEGYAKFVASYNFDSSGK 575
Query: 584 LSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGD 643
+S + VQ+ +T +LY HQ +E ++ E D + LALY+ R I + Y+ILGD
Sbjct: 576 ISQENADGVQNRSETFNTENLYLHQTLENEQGESDQGVRLALYWDRMSSTITSAYDILGD 635
Query: 644 SKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSID 703
+ L +V L + + ++ ++++K + + D D +K + FL AM +
Sbjct: 636 TALLEVFRTAYSLPSDMSNMDIEQQKKVIEKKMDLKDLSDPEKQKKFLQRFTAMYDLENN 695
>gi|150395704|ref|YP_001326171.1| hypothetical protein Smed_0479 [Sinorhizobium medicae WSM419]
gi|150027219|gb|ABR59336.1| protein of unknown function DUF1217 [Sinorhizobium medicae WSM419]
Length = 822
Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats.
Identities = 190/771 (24%), Positives = 334/771 (43%), Gaps = 98/771 (12%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ +++ ++D++ L VS+ IV+ + +YYRE I ++++D F+ D RL+SYA+
Sbjct: 54 MVSTYLDYNLIARDMKLSL-RRVSEQTIVARDTQYYRENIASVASVDAFLADYRLYSYAM 112
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM + F++K+LESDL+D S N+L +Y+ FA ++ FS V Q++ Q
Sbjct: 113 KAYGLGDMIDSVAFMRKVLESDLADDNSFANKLTDERYREFAMAFSFSGGTAVSQTEAQL 172
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I Y S E EE++Y+ + K+ SVDQL + RL Y+ F I S
Sbjct: 173 DEMIGLYNTSIASIGETQKEETRYYNLMVDKVTSVDQLLNNDRLRAYIFTVFGIDESTYS 232
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNR---------------------------------- 205
L++VL+ +P Y + R
Sbjct: 233 RETLRNVLSSNADDPDSYENTVLEPRLTELQTARADAQAKLQQSGTTQAEKLELQAKIAT 292
Query: 206 ----------FRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF--NNTIDCVPIVSD 253
+ AMA F+F DG+++ T + + Y N I + +
Sbjct: 293 YNKSISTVSNYLAMAAAFQFSADGTVAAGS-AQTAAHKKTMNELYVSSNPRITPQAALLN 351
Query: 254 QNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPI------- 306
+ Y++ I S+++ S+ + D +++ ++ + F LN + + +DP
Sbjct: 352 KAYFEEKIASITNVSELVADTRIYNYIRTA-FDLNEVTIVPATIKNILTSDPDDPDSYIN 410
Query: 307 ------VSQVKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIK 358
+ NF D + + Q Q Y D + I
Sbjct: 411 TIGKGNENYKALARAFNFQADGTLAAGDAAQTAEQTTLTSSRYMTRYNDKDDAADEKAIG 470
Query: 359 DYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTS 418
Y+L + K+ S+ + + E FAL A L+ ++ VL S
Sbjct: 471 AYKLAVEKMVSVGDFI-------------ETASIYDFALKAVGLDPDAESTRTIKRVLMS 517
Query: 419 NPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHD 478
+ +DP S+ KD+R +KL FNF G IG + Q I++ K Y K
Sbjct: 518 DLTDPGSFVYTLKDERYLKLAQLFNFTTSGDIGVPALAQPETLIQETAKTYIVNKSRFGS 577
Query: 479 AENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDS 538
E+K+ E + + S + LA+ R++ F LE+ GID
Sbjct: 578 EEDKAEAEAEAEYYTAE---------------VAKLASLDAFLADSRLVAFALEANGIDP 622
Query: 539 QKVREDFLCEIFKSDLKDPKSFANTYKDNR-YKEIISSFNFDIHGELSHKKIGKVQDNFH 597
+ V DFL EIF SDL DPKSF N +++ Y +++S+NFD G + + +
Sbjct: 623 ENVTIDFLREIFTSDLDDPKSFINQQQNSGSYIALVTSYNFDRSGNILREDKSVIITRQG 682
Query: 598 IDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLS 657
+ +T D Y HQ +E++ E + + LALYF+R ++ + Y++L D L +V L
Sbjct: 683 LYETFDRYLHQTLEEQAGEDNAGVRLALYFERQAGSLVDAYDLLADDALAEVFRTIFSLP 742
Query: 658 PYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM----DHQSIDY 704
F+ + ++ +I++K++ + + +++ L + ++ +D
Sbjct: 743 DEFSSMDIDQQAKIVEKNLDLEKLSEPAELKKLLARFTVLYDLENNTEVDP 793
>gi|116248743|ref|YP_764584.1| putative flagella associated protein [Rhizobium leguminosarum bv.
viciae 3841]
gi|115253393|emb|CAK11781.1| putative flagella associated protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 727
Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats.
Identities = 204/735 (27%), Positives = 347/735 (47%), Gaps = 31/735 (4%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ ++V+ + S V+ V+ + YY+E I ++T+DEF+ D +L+SYA+K
Sbjct: 1 MVSTYVSYLTVARNLNASLSNVASQATVARDSAYYKENIDKVTTVDEFMSDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ F+ K QSD+Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLSDSSSFANSLSDTRYAEFAAAFKFAGETKTAQSDVQRD 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
++ Y++S + + + YF NI I SVD L +L +YVL +F ++ +Y S
Sbjct: 121 NLLDAYEESFDTEAGDIADATDYFEDNISSITSVDDLLSSSKLKNYVLTAFGLSTEYTSS 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FLK VLT L + + D + +++ F F DG ++++ QI + S Y
Sbjct: 181 SFLKSVLTSDLDETDSFVNQLDDEVYVNLSKAFNFNEDGLTD--GDVMSEDQISLVTSAY 238
Query: 241 FNNTID---CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
+ + Y+ I +++S + + D KL L+ + + E D F+
Sbjct: 239 AVASATIASSETGEAYDTYFAAQIGNITSVDELMSDDKLVSYLRTAYGLTDSET--DNFI 296
Query: 298 TLMQENDPIVSQVK---YFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL-HDD 351
+ ++ I + NF D + Q Q + +N ++L +
Sbjct: 297 SAALKSADIADAIGLSELHDAFNFDEDGALADGDTAQTSEQTAATTAAFDENYEVLIANT 356
Query: 352 KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
+ + +Y + + SID+ L + ++ + P + AL AY+++ + R +
Sbjct: 357 DTEDAVDNYTTRIASVTSIDDFLVSNDDDDDDDNDDLPE-LWEMALRAYDIDPDSVSRSE 415
Query: 412 LRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN 471
+R +L S+PSD SY N DDR + AFNF+ +G + S + D +Y
Sbjct: 416 VRKILESDPSDSKSYVNSLDDDRFVAFRKAFNFDDNGDVTVPLQAMSESVVDDYATYYKQ 475
Query: 472 RKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLL 531
K + + + + + Y+ + TI + E LA+ R+++F+L
Sbjct: 476 NKIRYLEGDEMT-----------EATDAADEGITYFREQMATITTASEFLADDRLVSFVL 524
Query: 532 ESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGK 591
E+KG+D V D L E+F SDL D S+ N DNR+ E++ +FNFD G +S + G
Sbjct: 525 EAKGLDPDDVTSDALEEMFASDLDDEDSYVNKLDDNRFAELVGAFNFDQDGNISAEPTGT 584
Query: 592 VQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVS 651
VQ + +T D Y +E + + + + LALYF+R P I + Y+ILGDS LF+ +
Sbjct: 585 VQQRGDVLETIDAYVRLTLEDDQGDSNTGVRLALYFQRKAPEISSAYDILGDSALFEFFT 644
Query: 652 KKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM------DHQSIDYK 705
LS Y + + K+ ++ I I D D KV+D + AM +
Sbjct: 645 TSFNLSSYVSNMDVDKQAEMIDNFIDIEDLSDPDKVDDLIKRFTAMYDMANGTGTTSTAL 704
Query: 706 KALFSSPNQNKDPWN 720
L S + D
Sbjct: 705 SILTGSATISADTLL 719
>gi|241113587|ref|YP_002973422.1| protein of unknown function DUF1217 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861795|gb|ACS59461.1| protein of unknown function DUF1217 [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 727
Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats.
Identities = 202/706 (28%), Positives = 342/706 (48%), Gaps = 25/706 (3%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ ++V+ + S+V+ VS + YY+E I ++T+DEF+ D +L+SYA+K
Sbjct: 1 MVSTYVSYLSVARNLNASLSSVASQATVSRDSAYYKENIDKVTTVDEFMSDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+ K+LESDLSD S N L+ +Y FA ++ F+ K QSD+Q
Sbjct: 61 AYGLEDMTYAKAFMTKVLESDLSDSSSFANSLSDTRYAEFAAAFKFAGETKTAQSDVQRD 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
++ Y++S + + + + YF +NI I SVD L +L +YVL +F ++ +Y S
Sbjct: 121 NLLDAYEESFDTEADDIADATDYFEENISSITSVDDLLSSSKLKNYVLTAFGLSTEYTST 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FLK VLT L + + + D + +A+ F F DGS ++++ QI + S Y
Sbjct: 181 SFLKSVLTSDLEDADSFVNQLDDAVYVNLAKAFNFNEDGSTD--GDVMSEDQISLVTSAY 238
Query: 241 FNNTID---CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
+ + Y+ I +++S + + D KL L+ + + E D F+
Sbjct: 239 AVASATIASSETGEAYDTYFAAQIGNITSVDELMSDDKLVSYLRTAYGLTDSET--DNFI 296
Query: 298 TLMQENDPIVSQVK---YFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL-HDD 351
+ ++ + + NF D + Q Q + +N Q+L +
Sbjct: 297 SAALKSADVADAIGLSDLHDAFNFDEDGDLADGDTAQTSDQTATTTAAFDENYQVLVANA 356
Query: 352 KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
+ +Y + + SID+ L + ++ + P + AL AY+++ + R +
Sbjct: 357 STEDATDNYTTRIASVTSIDDFLVSNDDDDDDDNDDLPE-LWEMALRAYDIDPDSVSRSE 415
Query: 412 LRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN 471
+R +L S+P+D SY N DDR + AFNF+ +G + S + D +Y
Sbjct: 416 VRKILESDPADSKSYVNSLDDDRFVAFRKAFNFDDNGDVTVPLQAMSESVVDDYAAYYKQ 475
Query: 472 RKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLL 531
K + + N E+ Y+ + TI + E LA+ R+++F L
Sbjct: 476 NKIRYLEGAELT-----------EATDAANDEITYFREQMATITTASEFLADDRLVSFAL 524
Query: 532 ESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGK 591
E+KG+D V D L ++F SDL D S+ N DNR+ E++ +FNFD G +S G
Sbjct: 525 EAKGLDPDDVTSDELEKMFSSDLDDEDSYVNKLDDNRFAELVGAFNFDQDGNISADPTGT 584
Query: 592 VQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVS 651
VQ + +T D Y +E + + + + LALYF+R P I + Y ILGDS LF+ +
Sbjct: 585 VQQRGDVLETIDAYVRLTLEDDQGDSNTGVRLALYFQRKAPEISSAYNILGDSALFEFFT 644
Query: 652 KKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
LS Y + + K+ ++ I + D D KV+D + AM
Sbjct: 645 TTFNLSSYVSNMDVDKQAEMVDNFIDMKDLSDPDKVDDLIKRFTAM 690
>gi|227821060|ref|YP_002825030.1| putative flagella associated protein [Sinorhizobium fredii NGR234]
gi|227340059|gb|ACP24277.1| putative flagella associated protein [Sinorhizobium fredii NGR234]
Length = 769
Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats.
Identities = 188/781 (24%), Positives = 338/781 (43%), Gaps = 96/781 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ +++ VS+ +V+ + +YY+E I ++S++D F+ D RL+SYA+
Sbjct: 1 MVSTYLDYNLIARDMKVSLKRVSEQTVVARDTQYYKENIGNVSSVDAFLDDYRLYSYAMT 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
AFGL DM + F++K+LESDLSD S N L +Y+ FA +Y FS V Q++ Q
Sbjct: 61 AFGLGDMIDSVAFMRKVLESDLSDTSSFANSLTDDRYREFALAYSFSGATAVSQTEAQLD 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
II Y S + E EE++Y+ I KI SVDQL + RL YV +F + S
Sbjct: 121 EIIGLYDTSILNIAETQEEETRYYNVMIDKITSVDQLLNNDRLRAYVFTAFGVDESTYSR 180
Query: 181 PFLKDVLTLGLANPKKYFIE---------------------------------------- 200
++ VL+ + Y
Sbjct: 181 QTIRSVLSSSSGDASSYENTVIAPKLSELETAKAAAEAQLTAGGLTDEEEAELESKITTY 240
Query: 201 ----SRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF--NNTIDCVPIVSDQ 254
+ N + +A F F DG+++ TD E Y N+ + + ++
Sbjct: 241 ANSIATLNNYIDLAAAFDFNSDGTVTAG-AAQTDENKETTNELYISSNSRVTSQAALLNK 299
Query: 255 NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPI-------- 306
Y++ I S+++ ++ L D +L+ ++ + F L+ + + +DP
Sbjct: 300 AYFEETIASITTVTELLADTRLYNYIRTA-FDLDEVTIVSATIKNILTSDPDDPDSYVNT 358
Query: 307 -----VSQVKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKD 359
+ + NF D + Q +Q + Y D+ + +
Sbjct: 359 IGGGDANYLALANAFNFQEDGTLAVGDSAQTAAQTTLTSNRYMTRYNDKDDEADEKAVSA 418
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
Y+ + + S+D+ + FAL A L+ ++ VLTS+
Sbjct: 419 YKTAVASMTSVDDFIGSAS-------------IYDFALKAVGLDPDTASTRTIKRVLTSD 465
Query: 420 PSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDA 479
+DP SY KD+R + L FNF +G IGP + QS I++ K++ K
Sbjct: 466 LTDPKSYVYSLKDERYVTLAKLFNFTTEGEIGPPALAQSETQIQETAKNHIVIKSRFGSE 525
Query: 480 ENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQ 539
++K+ + E +YYT + + S +E LA+ R++ LE+ GID +
Sbjct: 526 DDKT---------------KAQEESEYYTAGVAKLSSLDEFLADDRLVTIALEANGIDPE 570
Query: 540 KVREDFLCEIFKSDLKDPKSFANTYKDNR-YKEIISSFNFDIHGELSHKKIGKVQDNFHI 598
V D L +IF SDL DP+S N +++ Y +++SFNFD G + + + +
Sbjct: 571 GVTADVLRQIFNSDLDDPESVINEQENSAAYVSLVTSFNFDSEGNVLREDRDSIVTRQGL 630
Query: 599 DDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSP 658
+T D Y Q +E++ E + + LALYF+R ++ + Y++L D L +V L
Sbjct: 631 YETLDQYLRQTLEEQAGESNEGVRLALYFERKAGSLVDAYDLLADDALAEVFRTIFSLPD 690
Query: 659 YFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM----DHQSIDYKKALFSSPNQ 714
F+ + ++ +I++K++ + D +++ L + ++ +D ++ +S
Sbjct: 691 EFSTMDIDQQAKIVEKNLDLEKLSDPAELKKLLARFAVLYDLENNTEVDPAVSVLTSTGS 750
Query: 715 N 715
+
Sbjct: 751 S 751
Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/251 (17%), Positives = 88/251 (35%), Gaps = 14/251 (5%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
F + E YY + +S++DEF+ D RL + AL+A G+ ++
Sbjct: 519 KSRFGSEDDKTKAQEESEYYTAGVAKLSSLDEFLADDRLVTIALEANGIDPEGVTADVLR 578
Query: 76 KILESDLSDPKSLVN-QLNSLKYQYFARSYDFSPPPKVIQSDIQH-----------KTII 123
+I SDL DP+S++N Q NS Y S++F V++ D +
Sbjct: 579 QIFNSDLDDPESVINEQENSAAYVSLVTSFNFDSEGNVLREDRDSIVTRQGLYETLDQYL 638
Query: 124 QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK--YISLP 181
+ + + + + YF + + L D L + FS+ + + +
Sbjct: 639 RQTLEEQAGESNEGVRLALYFERKAGSLVDAYDLLADDALAEVFRTIFSLPDEFSTMDID 698
Query: 182 FLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF 241
++ L K A + + + + +LT +S
Sbjct: 699 QQAKIVEKNLDLEKLSDPAELKKLLARFAVLYDLENNTEVDPAVSVLTSTGSSVGISADT 758
Query: 242 NNTIDCVPIVS 252
T+ + +
Sbjct: 759 LYTLSQLRMGG 769
>gi|27379820|ref|NP_771349.1| hypothetical protein blr4709 [Bradyrhizobium japonicum USDA 110]
gi|27352973|dbj|BAC49974.1| blr4709 [Bradyrhizobium japonicum USDA 110]
Length = 687
Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats.
Identities = 197/737 (26%), Positives = 330/737 (44%), Gaps = 69/737 (9%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ ++ + + + V + V+ E YY+ I + T+D+ +KD RL+ YALK
Sbjct: 1 MVSTYFSYNYISHHLKQSLTRVEQQTDVAREAAYYKANIGKVKTVDDLMKDYRLYHYALK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPK-VIQSDIQH 119
A+GL DM++A+ F++K+LESDLSD KS VN+L +Y+ FA ++ F+ V QS+ Q
Sbjct: 61 AYGLEDMAYAKAFMRKVLESDLSDAKSFVNKLVDKRYREFAAAFSFNGTATPVAQSENQT 120
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
I Y + + + + +++KY+ I I+S DQL + RL +YV +F I
Sbjct: 121 DETIGLYTATKKSQVDALADDTKYYSAQIGSISSADQLLNNDRLRNYVYSAFGIDQSKWP 180
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
+ VL ++P Y + ++ + + +K D T+ +I +
Sbjct: 181 PDTISQVLRSDPSDPNSYVNTAFASQLTGLNAQL------AQAKSDVSATNTKIADYTAQ 234
Query: 240 YFNNTIDC----VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADK 295
D V I+ ++ + + S+SS +D + F L + E +AD
Sbjct: 235 LSQPGADVAQLNVQILVEKYHLESYTKSISSLNDQIATIGGFVDLAGAF-----EFSADG 289
Query: 296 FLTLMQENDPIVSQVKYFFQINFHR-DNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQ 354
L + +Q + R D+S S S + + + I D +Q
Sbjct: 290 SLP-----SGVPAQTAANVTLTTKRFDDSKSDVYAAASPLNEAFATVQFRNAIGKIDSVQ 344
Query: 355 SLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRN 414
+ + FAL A L+ ++ + ++
Sbjct: 345 AFVST------------------------------PAVYDFALGAVGLDPAEVSQATVKA 374
Query: 415 VLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKR 474
L S+ SDP S+ KD+R ++L AFNF+A+G++ + Q + K Y
Sbjct: 375 ALESDLSDPKSFVYTLKDNRYVELARAFNFDANGNLTTPLVAQDSAKVLQTAKDYVIAVL 434
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
E QK + + + Y I I S ELLAN+++++F+L +K
Sbjct: 435 KQASPE-----------QQKAVREQAQKDATSYQEAIAGIDSVSELLANRKMVDFILVAK 483
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G+D +KV ++L +IF SDL +PKSFANT D+R+ EI +SFNFD ++ + Q
Sbjct: 484 GLDPKKVSTEYLKKIFASDLNNPKSFANTESDHRFAEIAASFNFDSKDNVARLAMVGPQK 543
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
+ +T Y Q +E+++ + +P + LALYF+R I + Y+IL D L +V
Sbjct: 544 QVQLRETQANYLQQSLEQQQGDTNPGVRLALYFQRKAGEITSAYDILADKALSEVFRTTF 603
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQ 714
L A +P ++ + + K +KI D D KVE L AM D K S Q
Sbjct: 604 NLPDSMAAMPIDQQAKFVDKFMKIKDLSDPAKVEKLLGRFSAM----YDVKNG--QSIGQ 657
Query: 715 NKDPWNNSFDDPQNNVS 731
+ P N F + +S
Sbjct: 658 GQSPLLNLFQGSGSGLS 674
>gi|300023907|ref|YP_003756518.1| hypothetical protein Hden_2400 [Hyphomicrobium denitrificans ATCC
51888]
gi|299525728|gb|ADJ24197.1| protein of unknown function DUF1217 [Hyphomicrobium denitrificans
ATCC 51888]
Length = 710
Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats.
Identities = 198/723 (27%), Positives = 316/723 (43%), Gaps = 60/723 (8%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + + S+ + VS VS YY I + ++D+F+ + RLFSYA+K
Sbjct: 1 MISTFLTYTSYASDMSRSLARVSGQAEVSSATAYYNANIGKVKSVDDFMNNHRLFSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDP----KSLVNQLNSLKYQYFARSYDFSPPPK----- 111
A+GL DM++A+ F+KK+L SD+S KS V +L ++ FA+++ FS K
Sbjct: 61 AYGLEDMTYAKAFMKKVLTSDISTSTNLQKSFVGKLTDPRFLKFAQAFQFSADGKVATQP 120
Query: 112 -VIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
Q +I Y Q +K A ++S Y++ NI + SVD L + RLL+Y L +
Sbjct: 121 VTAQQANDQSDLINLYTQQQVNKGATAADDSAYYQANIGNVASVDDLVGNTRLLNYALTA 180
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ I S +K VLT L++P + + N ++ +AE F F DGS++ +D
Sbjct: 181 YGIDASIASASAIKQVLTSDLSDPGSFANQMPGN-YKLLAEAFSFNTDGSINGASAQSSD 239
Query: 231 MQIEKIVSNY--FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFP-- 286
+ Y YY+ AI VSS D L + +LF L+ +
Sbjct: 240 DVSFTVYRYYDASGTGGSAPAAAFKSQYYQDAIAGVSSVDDLLGNARLFIYLETAFGLDP 299
Query: 287 -----------LNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSS-STKIQQDSQI 334
L +++ Q ND + F NF+ D S ++ Q SQ
Sbjct: 300 SEQSTAILRNVLTSDLSDPNSYANQQTNDAYRALAAAF---NFNTDGSINGSEAQTASQT 356
Query: 335 QKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQ 394
+ + N + S I Y+ + KI S+ + +
Sbjct: 357 DSTVSSFMTNNTTAVEKYQSSQINFYKTDIAKIASVSDFIKDT-------------GLYG 403
Query: 395 FALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIP 454
F L A+ ++ + + VL S+ S+P SYAN S + KL AFNF+ADG
Sbjct: 404 FVLSAFGIDPSKTSKLTIEKVLESDASNPSSYANMSHNSAYSKLAAAFNFDADGKAKTAS 463
Query: 455 MMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTI 514
Q ++ +K Y ++ K + + E YY I TI
Sbjct: 464 SAQVNASLVSTIKLYN-----------------SEMGDAKAEKKQTSDEDTYYGNTIGTI 506
Query: 515 HSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIIS 574
S +E L NKR++ F L + + + + D L +I SD DPKSF N +++ Y+ +
Sbjct: 507 KSVDEFLKNKRLVTFALTAFDLQDKALSNDTLRKILTSDPTDPKSFINKPENSAYRSMAV 566
Query: 575 SFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNI 634
+FNF G+ +VQ + T D Y Q +E+ +++ LALYF+R P+I
Sbjct: 567 AFNFGTDGKDLTTPTQQVQTRSQMVATTDAYARQTLEENAGDQNEGARLALYFQRLAPSI 626
Query: 635 RNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAA 694
+ Y IL D L +V L L + + ++ K +KI D +D +K++ FL
Sbjct: 627 TSAYSILADKALLQVAQTALGLPTSMSNADIDVQANMITKKLKIADLQDPEKLKKFLARF 686
Query: 695 KAM 697
AM
Sbjct: 687 SAM 689
>gi|90420304|ref|ZP_01228212.1| putative IMP dehydrogenase/GMP reductase [Aurantimonas
manganoxydans SI85-9A1]
gi|90335638|gb|EAS49388.1| putative IMP dehydrogenase/GMP reductase [Aurantimonas
manganoxydans SI85-9A1]
Length = 725
Score = 492 bits (1266), Expect = e-136, Method: Composition-based stats.
Identities = 191/746 (25%), Positives = 326/746 (43%), Gaps = 67/746 (8%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ + ++ ++D+ ++ ++ DP+V E YYR I +STIDEF+ D RL+SYA+
Sbjct: 11 MLSNTLSYQLYTRDM-TRTLDRIAADPVVKREAEYYRTNIHSVSTIDEFMADYRLYSYAM 69
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF----SPPPKVIQS 115
KA GL + ++ IKK+LESDLSD KSL N+L+ +Y+ FA+++ F PP V Q+
Sbjct: 70 KAHGLEEQIGSKALIKKVLESDLSDSKSLANKLSDERYRTFAKAFSFINTAEPPVLVAQT 129
Query: 116 DIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
Q +++ Y +V +K + I I++VD+ L + L S I P
Sbjct: 130 VGQTDLVVEAYSDYRTRAGQVHATAAKAYMDGIGAISNVDEFLNSTHLFNVSLASVGIDP 189
Query: 176 KYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEK 235
S F++DVLT A+ + DNR+ +A F+PDGS+ + ++ +
Sbjct: 190 SIASRSFIRDVLTGNAADGPA---ANGDNRYADLAAMLAFEPDGSIPAGG-LQSEKEANN 245
Query: 236 IVSNYFNN---TIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
V YF +YY+ I + + + + DP+LF + S+ + E+
Sbjct: 246 TVFEYFAKKGLATSEQAAAYQVSYYESEIAKIRTADELVNDPRLFGIALSSVGLSDSEMP 305
Query: 293 ADKF-------------LTLMQENDPIVSQVKYFF-----QINFHRDNS--SSTKIQQDS 332
+ + L M E+ P K + + NF + Q D+
Sbjct: 306 SYAWTLITSDPDDPNSDLNQMPEDTPASLARKEKYKLLNERFNFDTQGNLPVGEPAQSDA 365
Query: 333 QIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
+ +D Y N + + +++ + + ++ +S
Sbjct: 366 AREATVDGYFANYRTATAGNDKIATSLFRVAVSGMSTVRQFVSSSA-------------V 412
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGP 452
+AL A+ L+ R + VL S+PSDP SYAN +DR +KL AFNF+ G I
Sbjct: 413 YDYALKAFGLDPATESRSSIMRVLRSDPSDPSSYANSLNNDRYVKLAAAFNFDDSGKIAA 472
Query: 453 IPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNIN 512
+ Q+ D YA S T + I Y +
Sbjct: 473 QRIAQTEANQIDTATRYA--------------GSFGDTPTTAE-SKAITEATTAYKKALL 517
Query: 513 TIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEI 572
+I S + ++NK ++NF L++ G+++ ++ + L I SD DP+SF N D R E
Sbjct: 518 SIVSVNDFVSNKTVVNFALKAYGLEADRLSQKDLVSILTSDPSDPESFVNKSGDRRLIEF 577
Query: 573 ISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIP 632
+++ F G + + ++Q T D Y Q +E++ + ++ LALYF+R P
Sbjct: 578 AAAYAFTPDGGIER-GVHEIQSASDFLSTQDFYLRQTMEEEAGADNESVRLALYFRRLAP 636
Query: 633 NIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLY 692
+ + YEIL D L VV + L + + R ++K + + KD K +E F+
Sbjct: 637 ELTSIYEILADPALLTVVQTAVGLPAESSQSNLDLQKRTIEKKLDLETLKDPKGLERFIS 696
Query: 693 AAKAMD-----HQSIDYKKALFSSPN 713
A+ + A+ S
Sbjct: 697 RYLALQEAQSTSTATSPALAILGSSG 722
Score = 140 bits (353), Expect = 6e-31, Method: Composition-based stats.
Identities = 85/463 (18%), Positives = 159/463 (34%), Gaps = 64/463 (13%)
Query: 219 GSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFK 278
G+ L+ + ++ + + + YY+ I+SVS+ +F+ D +L+
Sbjct: 7 GNAGMLSNTLSYQLYTRDMTRTLDRIAADPVVKREAEYYRTNIHSVSTIDEFMADYRLYS 66
Query: 279 MLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKI- 328
+ L +I + + + E+D S+ F F N++ +
Sbjct: 67 Y-AMKAHGLEEQIGSKALIKKVLESDLSDSKSLANKLSDERYRTFAKAFSFINTAEPPVL 125
Query: 329 --QQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSA 386
Q Q +++ Y + + K Y +G I ++D L+
Sbjct: 126 VAQTVGQTDLVVEAYSD-YRTRAGQVHATAAKAYMDGIGAISNVDEFLNSTH-------- 176
Query: 387 EEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNA 446
+L + ++ R +R+VLT N +D + D+R L F
Sbjct: 177 -----LFNVSLASVGIDPSIASRSFIRDVLTGNAADGP---AANGDNRYADLAAMLAFEP 228
Query: 447 DGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDY 506
DGSI P +QS + V Y +K + ++ +V Y
Sbjct: 229 DGSI-PAGGLQSEKEANNTVFEYFAKKGLATSEQAAAY------------------QVSY 269
Query: 507 YTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKD 566
Y I I + +EL+ + R+ L S G+ ++ + + SD DP S N +
Sbjct: 270 YESEIAKIRTADELVNDPRLFGIALSSVGLSDSEM-PSYAWTLITSDPDDPNSDLNQMPE 328
Query: 567 N---------RYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEK 617
+ +YK + FNFD G L Q + + T D Y
Sbjct: 329 DTPASLARKEKYKLLNERFNFDTQGNL--PVGEPAQSDAAREATVDGYFANYRTATAGND 386
Query: 618 DPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660
+L F+ + + + + S ++ K L P
Sbjct: 387 KIATSL---FRVAVSGMSTVRQFVSSSAVYDYALKAFGLDPAT 426
>gi|222085079|ref|YP_002543609.1| hypothetical protein Arad_1171 [Agrobacterium radiobacter K84]
gi|221722527|gb|ACM25683.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 836
Score = 445 bits (1145), Expect = e-122, Method: Composition-based stats.
Identities = 178/712 (25%), Positives = 305/712 (42%), Gaps = 69/712 (9%)
Query: 20 STVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILE 79
S ++ E Y+ + I + T+D+ + + RL +Y L+A+GL + F+K++L
Sbjct: 130 SFTTEATNAQTETTYFSQNISSVKTVDDLLGNSRLKNYVLQAYGLDPTYTSNSFLKQMLT 189
Query: 80 SDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALE 139
SDLSDP S VNQ S + ++F+ V S
Sbjct: 190 SDLSDPDSFVNQNGSAADKAIVAEFNFNADGTVKTSTADAD------------------- 230
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
+ Y+ +I I SV QL D +L +YV +F I + F K
Sbjct: 231 -TTYYENHISTITSVSQLTADPKLFNYVKTAFDIPAYITATQF---------NAAAKDAS 280
Query: 200 ESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY------------------- 240
+ + F FQ DG+++ + T QI Y
Sbjct: 281 VAATKGLTDVMAQFNFQSDGTVASGSQAQTSAQISATTDAYATNYKGGPQTLGQMADVMS 340
Query: 241 -----FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADK 295
+ V + YYK I S+++ + D +LF ++ + + ++ + A
Sbjct: 341 AYNSAVPSYTTDVGANDNDLYYKEHIGSITTVDELTSDTRLFDYIKTA-YGIDADTPAVV 399
Query: 296 FLTLMQEND--PIVSQVKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDD 351
+ I Q NF D + S Q + I Y KN Q
Sbjct: 400 LKNAFSSSSTAAIFGLTDVVSQFNFQADGTLASGDTAQSQTAIDAASTAYMKNYQTSQTS 459
Query: 352 KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
+ +YQ + +K+ID+ + + S + Q A+ AY ++ ++ + Q
Sbjct: 460 LTTKAVSNYQTRIAAVKTIDDFFATNATADSDTSNDSLPELYQMAMRAYGISPDEMTKTQ 519
Query: 412 LRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN 471
++ +L S+P DP SY N KD R L AFNF++DG + P S+ I V Y++
Sbjct: 520 MKKILESDPYDPKSYVNSLKDTRFTNLAKAFNFDSDGKLKPPVQALSQTQINSYVSEYSS 579
Query: 472 RKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLL 531
R + + + + Y+ NI + S +LLA+ ++ +++L
Sbjct: 580 RSKIGLTGAELT-----------KATSDAKDAGTYFATNIVKVTSVTDLLADSKLTDYIL 628
Query: 532 ESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGK 591
++ GID + V L + F SD D KSF NT ++K I+++FNFD G L++ K+G
Sbjct: 629 KANGIDPKTVDTATLKKAFASDPSDSKSFINTDDGAQFKSIVNAFNFDTDGNLTNTKLGT 688
Query: 592 VQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVS 651
Q+ I DT DL+ HQ +E +E E + + LALYF+R P+I + Y+I+GD+ L++V++
Sbjct: 689 AQNQGTIADTNDLFLHQTLEDQEGETNTGVQLALYFQRKAPDISSIYDIMGDTALYQVIT 748
Query: 652 KKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSID 703
L + + + ++L K + ++D +D KV L AM + +
Sbjct: 749 TTYSLPSSMSSMDVDTQAKLLAKFVDVSDLQDPTKVNKLLQRFSAMYDLANN 800
Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats.
Identities = 155/690 (22%), Positives = 270/690 (39%), Gaps = 87/690 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI +++ + + + V+ + YY I ++ +D+F+ D +L+SYA++
Sbjct: 1 MISTYLGYTVATRNMATTLNQVASQSQSKRQIDYYNANIGKVTNVDDFMGDYQLYSYAME 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPP-PKVIQSDIQH 119
A+GLSDM++A+ F+K++L SDLSD S N+L +Y+ FA +++F QS Q
Sbjct: 61 AYGLSDMTYAKAFMKQVLTSDLSDSTSFANKLTDPRYKEFAAAFNFGTGSSSTAQSSTQE 120
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I Y QS + A E+ YF +NI + +VD L + RL +YVLQ++ + P Y S
Sbjct: 121 DDLIGLYNQSFTTEATNAQTETTYFSQNISSVKTVDDLLGNSRLKNYVLQAYGLDPTYTS 180
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FLK +LT L++P + ++ +A+ F F DG++
Sbjct: 181 NSFLKQMLTSDLSDPDSFVNQNGSAADKAIVAEFNFNADGTVKTS--------------- 225
Query: 240 YFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTL 299
+D YY+ I++++S S DPKLF ++ + F + ITA +F
Sbjct: 226 ---------TADADTTYYENHISTITSVSQLTADPKLFNYVKTA-FDIPAYITATQFNAA 275
Query: 300 MQENDPIVSQ--VKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDD---- 351
++ ++ Q NF D + S ++ Q +QI D Y N +
Sbjct: 276 AKDASVAATKGLTDVMAQFNFQSDGTVASGSQAQTSAQISATTDAYATNYKGGPQTLGQM 335
Query: 352 -----KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
S + Y +G + + + + AY ++
Sbjct: 336 ADVMSAYNSAVPSYTTDVGANDNDLYYKEHIGSITTVDELTSDTRLFDYIKTAYGIDADT 395
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
L+N +S + D + FNF ADG++ QS+ I
Sbjct: 396 -PAVVLKNAFSS---SSTAAIFGLTD-----VVSQFNFQADGTLASGDTAQSQTAIDAAS 446
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLAN--- 523
Y Q V Y I + + ++ A
Sbjct: 447 TAYMKN-------------------YQTSQTSLTTKAVSNYQTRIAAVKTIDDFFATNAT 487
Query: 524 ----------KRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEII 573
+ + + GI ++ + + +I +SD DPKS+ N+ KD R+ +
Sbjct: 488 ADSDTSNDSLPELYQMAMRAYGISPDEMTKTQMKKILESDPYDPKSYVNSLKDTRFTNLA 547
Query: 574 SSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEK-----DPNIALALYFK 628
+FNFD G+L K + I+ Y + + YF
Sbjct: 548 KAFNFDSDGKL--KPPVQALSQTQINSYVSEYSSRSKIGLTGAELTKATSDAKDAGTYFA 605
Query: 629 RTIPNIRNHYEILGDSKLFKVVSKKLKLSP 658
I + + ++L DSKL + K + P
Sbjct: 606 TNIVKVTSVTDLLADSKLTDYILKANGIDP 635
>gi|15887995|ref|NP_353676.1| hypothetical protein Atu0653 [Agrobacterium tumefaciens str. C58]
gi|15155605|gb|AAK86461.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 812
Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats.
Identities = 147/718 (20%), Positives = 290/718 (40%), Gaps = 76/718 (10%)
Query: 28 VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKS 87
++ E RYY+ I ++ D+ +++ R +Y + F + + +++ IK ++ SD++DP S
Sbjct: 137 LAEETRYYKAIIGTVTNADQLLRNDRTRAYIFQVFNIDEKTYSYAHIKGLMTSDVNDPNS 196
Query: 88 LVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRK 146
+NQ Y Q + I D + EE E++ +
Sbjct: 197 YINQNYGAAYNDAVEKLTMKGNIELHAQVTARITAIDTDLAGTGLTAEERTKLEAEKVTR 256
Query: 147 NIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRF 206
+++ ++ + + D L + +S ++ N+
Sbjct: 257 Q-NQLTQLEAVLPPKDQWDAKLAAIKAEQTTLSNAV------------------TQYNKM 297
Query: 207 RAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS--DQNYYKLAINSV 264
+A F F+ DG++ T +++ I +Y + P V+ +++Y++ I S+
Sbjct: 298 AQIANAFEFKNDGTVDAGG-AQTADKLKAITDSYIGSAPRVTPTVATLNRDYFESKIGSI 356
Query: 265 SSFSDFLKDPKLFKMLQLSL--------------FPLNPEITADKFLTLMQENDPIVSQV 310
++ + + D +L ++ + + + ++ M +ND +
Sbjct: 357 TTVEELMSDARLLNYVRTAFDLNDLTIVPATIKNILTSDLSDPNNYIATMGKNDKRYLAL 416
Query: 311 KYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSI 370
K F ++ T Q +Q Y + D + ++ + K+ S+
Sbjct: 417 KNAFNFLPDGTLAAGTTPQTTTQTATTTSGYMTHYNDADDAADAKALSLFKSSISKVTSV 476
Query: 371 DNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKS 430
++ L +AL A L+ ++ ++ VLTS+ D SY
Sbjct: 477 NDFLGTNA-------------VYTYALRAVGLDPAKVNISDIQRVLTSDLQDKKSYVYTL 523
Query: 431 KDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQI 490
KDDR +KL FNF DGS+G + QS + ++ Y +K + ++K
Sbjct: 524 KDDRYVKLAELFNFTKDGSVGSPILAQSEIELQTMSADYIKKKSAFGTEKDK-------- 575
Query: 491 STQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIF 550
+E Y++ + I + E LAN R+ F +ES GID + V ++ L +IF
Sbjct: 576 -------EAAQTEAKYFSGEMQKIKTLSEFLANDRLTKFAMESLGIDPKSVTKEQLQKIF 628
Query: 551 KSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMI 610
S+L D S+ N D ++ ++++FNFD G+L H+ +Q + +T D Y Q +
Sbjct: 629 TSNLDDKNSYVNKEMDPVFRRLVTAFNFDTEGKLLHEDRSAIQTRRGLYETLDNYLTQTL 688
Query: 611 EKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR 670
E + E++ + LALYFKR ++Y IL D+ + + + ++
Sbjct: 689 ESQAGEENAGVRLALYFKRMAAGTTSYYSILADTAIQNFIKTTFGIPDELGNANVDTQVA 748
Query: 671 ILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQN 728
++KK+ I DF+D KV+ + M + DP F+ +
Sbjct: 749 MMKKYFDIKDFQDPDKVKKLIARFTIMYDNKQNV-----------ADPIMTLFNGSGS 795
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 149/682 (21%), Positives = 294/682 (43%), Gaps = 54/682 (7%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ + ++ ++D++S + S VS+ +V + +YY+E I ++ ++DEF+ + +L+SYA+
Sbjct: 1 MVSTFLSYDLINRDMKSSI-SRVSQQGLVERQTKYYKENIGNVKSVDEFLGNYQLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
AFGL +M++A+ F+KK+LESDL+D S N+L +Y+ FA S++F+ K +Q+D Q
Sbjct: 60 DAFGLGEMTYAKAFMKKVLESDLNDQNSFANKLTDERYREFAASFNFTASTKTVQTDAQL 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I Y S + EE++Y++ I + + DQL ++ R Y+ Q F+I K S
Sbjct: 120 DKMIGLYDTSITNLNGSLAEETRYYKAIIGTVTNADQLLRNDRTRAYIFQVFNIDEKTYS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
+K ++T + +P Y ++ + E + + L +I I ++
Sbjct: 180 YAHIKGLMTSDVNDPNSYINQNYGAAYNDAVEKLTMKGNIEL----HAQVTARITAIDTD 235
Query: 240 YFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTL 299
+ + N ++ L + ++ ++ +
Sbjct: 236 LAGTGLTAEERTKLEAEKVTRQNQLTQLEAVLPPKDQWDAKLAAIKAEQTTLSN----AV 291
Query: 300 MQENDPIVSQVKYFFQINFHRDNS-SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIK 358
Q N ++Q+ F+ F D + + Q +++ + D Y + +L +
Sbjct: 292 TQYNK--MAQIANAFE--FKNDGTVDAGGAQTADKLKAITDSY-IGSAPRVTPTVATLNR 346
Query: 359 DY-QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLT 417
DY + +G I +++ L+S L + A++LN + ++N+LT
Sbjct: 347 DYFESKIGSITTVEELMSDAR-------------LLNYVRTAFDLNDLTIVPATIKNILT 393
Query: 418 SNPSDPDSYANKSK--DDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRS 475
S+ SDP++Y D R + L +AFNF DG++ Q+ Y
Sbjct: 394 SDLSDPNNYIATMGKNDKRYLALKNAFNFLPDGTLAAGTTPQTTTQTATTTSGYMTH--- 450
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
+ + + +I+ + S + L + + L + G
Sbjct: 451 ----------------YNDADDAADAKALSLFKSSISKVTSVNDFLGTNAVYTYALRAVG 494
Query: 536 IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDN 595
+D KV + + SDL+D KS+ T KD+RY ++ FNF G + + + +
Sbjct: 495 LDPAKVNISDIQRVLTSDLQDKKSYVYTLKDDRYVKLAELFNFTKDGSVGSPILAQSEIE 554
Query: 596 FHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLK 655
D K + E++K+ A YF + I+ E L + +L K + L
Sbjct: 555 LQTMS-ADYIKKKSAFGTEKDKEAAQTEAKYFSGEMQKIKTLSEFLANDRLTKFAMESLG 613
Query: 656 LSPYFAVLPERKKIRILKKHIK 677
+ P + + + +I ++
Sbjct: 614 IDPK--SVTKEQLQKIFTSNLD 633
Score = 99 bits (247), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 15/227 (6%)
Query: 15 QSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFI 74
+ F T E +Y+ ++ I T+ EF+ + RL +A+++ G+ S ++ +
Sbjct: 565 KKSAFGTEKDKEAAQTEAKYFSGEMQKIKTLSEFLANDRLTKFAMESLGIDPKSVTKEQL 624
Query: 75 KKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH-----------KTII 123
+KI S+L D S VN+ ++ +++F K++ D +
Sbjct: 625 QKIFTSNLDDKNSYVNKEMDPVFRRLVTAFNFDTEGKLLHEDRSAIQTRRGLYETLDNYL 684
Query: 124 QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFL 183
+S +E + + YF++ S + D + +++ +F I + +
Sbjct: 685 TQTLESQAGEENAGVRLALYFKRMAAGTTSYYSILADTAIQNFIKTTFGIPDELGNANVD 744
Query: 184 KDV-LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
V + + K + ++ + + F D + D I+T
Sbjct: 745 TQVAMMKKYFDIKDF---QDPDKVKKLIARFTIMYDNKQNVADPIMT 788
>gi|115524603|ref|YP_781514.1| hypothetical protein RPE_2596 [Rhodopseudomonas palustris BisA53]
gi|115518550|gb|ABJ06534.1| protein of unknown function DUF1217 [Rhodopseudomonas palustris
BisA53]
Length = 799
Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats.
Identities = 171/729 (23%), Positives = 292/729 (40%), Gaps = 91/729 (12%)
Query: 7 APFPSKDIQSKLFSTVSKDPI-VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLS 65
+ + ++ +T+ + V + RYY +I I+T+D+ + + RL +Y AFG+
Sbjct: 116 TSYQTDEMVGLYTATLQQQADAVGEDTRYYNAKIGSIATVDQLLNNDRLRTYVFSAFGID 175
Query: 66 DMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQD 125
D + + +K IL SD SDP S +N + + PP I
Sbjct: 176 DGTWSRATMKNILGSDPSDPGSYINTV-------------WGPP---------LDDAIAS 213
Query: 126 YKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKD 185
+ + + + + Y + + L L + S + +
Sbjct: 214 FNLAQAESTDASSKIDDYTAQMAQPGADLADLKAKIALEQGRVAKASSDMSGFNKTII-- 271
Query: 186 VLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI 245
+ +A F F DG+L+ TD + + +
Sbjct: 272 ----------------AIGHYFELASAFEFSTDGTLASGVAAQTDENRKITNEKFIADQP 315
Query: 246 DCVPIVS--DQNYYKLAINSVSSFSDFLKDPKL---------FKMLQLSLFPLNPEITAD 294
P + ++ Y++ +S + + D F + L L L +T+D
Sbjct: 316 RTSPAAALVEKAYFEQQASSARTVDELFADDAFRMAKFIGVAFGVGTLPLSTLKSILTSD 375
Query: 295 K-------FLTLMQENDPIVSQVKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNC 345
+ F+ L N +++ F NF +D + + Q +Q + Y
Sbjct: 376 RDVNNASSFVNLAGSNKDAYTRLMNAF--NFKQDGTLDAGVDAQSATQSSATIGRYMTAY 433
Query: 346 QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQ 405
+ + + ++ + I SI+ +S FAL+A L+
Sbjct: 434 NDADEASEKLAKQMFKSGVYGITSIEKFVSTPS-------------VYNFALEAVGLDPD 480
Query: 406 DLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDN 465
+ ++ L S+ SDP SY KDDR ++L FNF++ G + + Q + +
Sbjct: 481 SVSATTVKAALKSDLSDPKSYVYTLKDDRYVQLARYFNFDSKGQLTTPLVAQDAAEVTNI 540
Query: 466 VKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKR 525
K Y K A K+ + + YY I + S ELLA+K+
Sbjct: 541 AKDYVIAKTKFASAAEKA-----------GLQEAAEKDALYYKNAIAGVDSVSELLADKK 589
Query: 526 ILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELS 585
++NF+L +KG+D +KV D+L +IF SDL D KSFAN D R+ EI +SFNFD G+++
Sbjct: 590 LVNFILVAKGLDPKKVTNDYLRKIFSSDLSDAKSFANKESDLRFAEIAASFNFDKKGKVT 649
Query: 586 HKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSK 645
Q + +T + Y Q +E ++ +P + LALYF+R P I + Y+IL D
Sbjct: 650 RIAATGPQSREQLLETQNNYLQQSLESQQGNTNPGVRLALYFQRKAPEITSAYQILADKA 709
Query: 646 LFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYK 705
LF+V L A P K+ +I++KH+K+ D D K+ L M D K
Sbjct: 710 LFEVFRTTYSLPDTMANAPIEKQAKIVEKHLKLKDLGDPAKLGRVLSRFAVM----YDLK 765
Query: 706 KALFSSPNQ 714
+ SSP
Sbjct: 766 NSQVSSPAL 774
>gi|90423974|ref|YP_532344.1| hypothetical protein RPC_2474 [Rhodopseudomonas palustris BisB18]
gi|90105988|gb|ABD88025.1| protein of unknown function DUF1217 [Rhodopseudomonas palustris
BisB18]
Length = 801
Score = 413 bits (1060), Expect = e-113, Method: Composition-based stats.
Identities = 162/746 (21%), Positives = 299/746 (40%), Gaps = 95/746 (12%)
Query: 7 APFPSKDIQSKLFSTVSKDPI-VSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLS 65
+ + + ++ +T+ + V + RYY +I ++T+D+ + D RL Y AFG+
Sbjct: 116 SSYQTDEMVGLYTATLQRQADAVGEDTRYYNAKIGSVTTVDQLLNDDRLRGYVFSAFGID 175
Query: 66 DMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQD 125
+ + ++K+L SD SDP S VN + + PP +I
Sbjct: 176 EDHWSRDTLRKVLSSDSSDPNSYVNAV-------------WGPP---------LDDLIAK 213
Query: 126 YKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKD 185
Q+ + + Y + + D + +
Sbjct: 214 LDQAQLDSSDAKSKIVDYTTQ----LTQPGADLADLN---------------AKIAEQRT 254
Query: 186 VLTLGLANPKKYFIE-SRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNT 244
L A+ Y + + + +A F F PDG+L+ TD + + +
Sbjct: 255 RLGKTAADISSYTGSITAISHYFDLAGAFEFSPDGTLAAGVSAQTDASRKTTNERFITSQ 314
Query: 245 IDCVP--IVSDQNYYKLAINSVSSFSDFLKDP----------KLFKMLQLSLFPLNPEIT 292
P + ++ +++ I + L P F + L L + +T
Sbjct: 315 PRTSPSTALLEKQFFQQKIAGARTVDQLLAAPDAARVASFIGTAFGLGTLPLSTIKSILT 374
Query: 293 ADK-------FLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNC 345
+D+ ++ +++ F N + Q ++Q + Y
Sbjct: 375 SDRDPNNPNSYVNSAGSKKDAYTRLMKAFNFNQDGTLDAGVDAQSETQTATTVGYYMVAY 434
Query: 346 QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQ 405
+ + I+ ++ + I SI+ +S FAL + L+
Sbjct: 435 NDADEASDKLAIQRFRNGVYSITSIEKFVSTPA-------------VYNFALKSVGLDPD 481
Query: 406 DLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDN 465
+ ++ L S+ S+P SY KD+R ++L +FNF++ G + + Q + +
Sbjct: 482 SVSAITVKAALESDLSNPRSYVYTLKDERYVQLARSFNFDSKGHLTTPLVAQDTAEVGNI 541
Query: 466 VKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKR 525
K Y K A +K+ + ++ Y I + S ELL++K+
Sbjct: 542 AKDYVIAKTKFATAADKA-----------TLQKTAENDAVEYRSKIAGVDSVAELLSDKK 590
Query: 526 ILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELS 585
++NF+L +KG+D +KV D L +I SDL DPKSFANT D R+ E+ +SFNFD G+++
Sbjct: 591 LVNFILVAKGLDPKKVTPDTLKKILSSDLSDPKSFANTASDTRFAELAASFNFDKTGKVA 650
Query: 586 HKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSK 645
+ Q+ + +T Y Q +E ++ +P + LALYF+R P+I + Y+IL D
Sbjct: 651 RFVVAGPQNREQLLETQTKYLQQSLEAQQGGANPGVRLALYFQRKAPDITSAYDILADKA 710
Query: 646 LFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYK 705
L +VV L A P ++ +I++K++K+ D D ++ L M D K
Sbjct: 711 LSEVVRTTYNLPDSMANAPIEQQAKIVEKYLKLKDLSDPAQLAKILSRFSVM----YDVK 766
Query: 706 KALFSSPNQNKDPWNNSFDDPQNNVS 731
A +QN+ P ++S
Sbjct: 767 NA-----SQNQSPALAILTGSGASIS 787
>gi|325292035|ref|YP_004277899.1| hypothetical protein AGROH133_04160 [Agrobacterium sp. H13-3]
gi|325059888|gb|ADY63579.1| hypothetical protein AGROH133_04160 [Agrobacterium sp. H13-3]
Length = 812
Score = 405 bits (1039), Expect = e-110, Method: Composition-based stats.
Identities = 145/706 (20%), Positives = 278/706 (39%), Gaps = 65/706 (9%)
Query: 25 DPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSD 84
D +S E RYY+ I ++ +D+ +++ R +Y + F + + +++ IK ++ SD+ D
Sbjct: 134 DDSLSEETRYYKAIIGTVTNVDQLLQNDRTRAYIFEVFSIDEKTYSYSHIKGLMTSDIDD 193
Query: 85 PKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYF 144
P S +NQ Y ++ T I E
Sbjct: 194 PNSYLNQKFGAAYSAAVEKLTTKGNIELHGDVTDRITAIDTALADTTLTAEQRTALETEK 253
Query: 145 RKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDN 204
++ ++ + + L S + +S S+ N
Sbjct: 254 TTRQDQLTQLEAVLPPKDQWAATLASITAEQTQLSNTV------------------SQYN 295
Query: 205 RFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS--DQNYYKLAIN 262
MA+ F F DG+++ + T ++ + Y + P V+ +++Y++ I
Sbjct: 296 TMAQMAQAFEFANDGTVAAG-QAQTADNVKILTQAYVGSAPRVTPTVATLNRDYFESKIG 354
Query: 263 SVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPI-------------VSQ 309
S+ + + + DP+L ++++ F LN + + + +D
Sbjct: 355 SIKTVDELMADPRLVNYIKVA-FDLNDLTIVNATIENILTSDLSDPNNYIAKFGNGDKRY 413
Query: 310 VKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKI 367
+ NF D + T Q +Q + Y + + ++ +K ++ + +
Sbjct: 414 IALREAFNFKADGTLPDGTAPQTTTQTVTTTNGYMNHYNDKDEAADENALKLFKSDIANV 473
Query: 368 KSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYA 427
KS+ + L +AL A L+ ++ +R LTS+ D SY
Sbjct: 474 KSVADFLESSA-------------VYTYALKAVGLDPTKVNIADVRRALTSDLLDKKSYV 520
Query: 428 NKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSM 487
KDDR +KL FNF +DGS G + QS L I+ Y +K + + K
Sbjct: 521 YALKDDRYVKLAELFNFKSDGSPGSPVLAQSELEIQSMSVDYIKKKSAFGTDQEKEAAKK 580
Query: 488 EQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLC 547
E ++ + + + + L N R+ F +ES GID KV +D L
Sbjct: 581 EAE---------------FFRSELQKVKTLSDFLGNDRLTKFAMESLGIDPTKVTKDQLQ 625
Query: 548 EIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKH 607
++F S+L D S+ N D ++ ++++FNFD G + + +Q + +T D Y
Sbjct: 626 KMFTSNLDDKDSYLNKEMDPAFRRLVTAFNFDTDGNILREDRSSIQTRRGLYETLDNYLT 685
Query: 608 QMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERK 667
Q +E + E++ + LALYFKR ++Y IL D+ + ++ +
Sbjct: 686 QTLETQAGEENAGVRLALYFKRMAAGTTSYYSILADTAIQNFITTTFGIPDELGNAGVDT 745
Query: 668 KIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPN 713
++ ++KK+ I DF+D KV+ + M + + N
Sbjct: 746 QVAMMKKYFDIEDFQDPDKVKKLIARFTIMYDDKQNTTNPIMMLFN 791
Score = 380 bits (976), Expect = e-103, Method: Composition-based stats.
Identities = 157/688 (22%), Positives = 309/688 (44%), Gaps = 60/688 (8%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ + ++ ++D+++ + S VS+ IV + +YY+E I ++ ++DEF+ + +L+SYA+
Sbjct: 1 MVSTFLSYDLINRDMKASI-SRVSQQGIVERQTKYYKENIGNVKSVDEFLNNYQLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
AFGL +M++A+ F+KK+LESDL+D S N+L +Y+ FA S++F+ +Q++ Q
Sbjct: 60 DAFGLGEMTYAKAFMKKVLESDLNDQNSFANKLTDERYREFAASFNFTQSTTTVQTEAQL 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+I Y S + ++ EE++Y++ I + +VDQL ++ R Y+ + FSI K S
Sbjct: 120 DKMIGLYDTSITNLDDSLSEETRYYKAIIGTVTNVDQLLQNDRTRAYIFEVFSIDEKTYS 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
+K ++T + +P Y + + A E + G++ + +I I +
Sbjct: 180 YSHIKGLMTSDIDDPNSYLNQKFGAAYSAAVE--KLTTKGNIELHGDVT--DRITAIDTA 235
Query: 240 YFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTL 299
+ T+ + + + ++ L + S+ +++ T+
Sbjct: 236 LADTTLTAEQRTALETEKTTRQDQLTQLEAVLPPKDQWAATLASITAEQTQLSN----TV 291
Query: 300 MQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKD 359
Q N ++Q+ F+ F D + + Q + K+L + +L +D
Sbjct: 292 SQYN--TMAQMAQAFE--FANDGTVAAGQAQTADNVKILTQAYVGSAPRVTPTVATLNRD 347
Query: 360 Y-QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTS 418
Y + +G IK++D L++ + + A++LN + + N+LTS
Sbjct: 348 YFESKIGSIKTVDELMADPR-------------LVNYIKVAFDLNDLTIVNATIENILTS 394
Query: 419 NPSDPDSYANKS--KDDRLIKLNHAFNFNADGSI----GPIPMMQSRLTIRDNVKHYANR 472
+ SDP++Y K D R I L AFNF ADG++ P Q+ T + HY ++
Sbjct: 395 DLSDPNNYIAKFGNGDKRYIALREAFNFKADGTLPDGTAPQTTTQTVTTTNGYMNHYNDK 454
Query: 473 KRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLE 532
+ + K F S +I + S + L + + + L+
Sbjct: 455 DEAADENALKLFKS-----------------------DIANVKSVADFLESSAVYTYALK 491
Query: 533 SKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKV 592
+ G+D KV + SDL D KS+ KD+RY ++ FNF G + +
Sbjct: 492 AVGLDPTKVNIADVRRALTSDLLDKKSYVYALKDDRYVKLAELFNFKSDGSPGSPVLAQS 551
Query: 593 QDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSK 652
+ D K + ++EK+ A +F+ + ++ + LG+ +L K +
Sbjct: 552 ELEIQSMS-VDYIKKKSAFGTDQEKEAAKKEAEFFRSELQKVKTLSDFLGNDRLTKFAME 610
Query: 653 KLKLSPYFAVLPERKKIRILKKHIKIND 680
L + P + + + ++ ++ D
Sbjct: 611 SLGIDPT--KVTKDQLQKMFTSNLDDKD 636
Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 15 QSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFI 74
+ F T + E ++R ++ + T+ +F+ + RL +A+++ G+ + +
Sbjct: 565 KKSAFGTDQEKEAAKKEAEFFRSELQKVKTLSDFLGNDRLTKFAMESLGIDPTKVTKDQL 624
Query: 75 KKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH-----------KTII 123
+K+ S+L D S +N+ ++ +++F +++ D +
Sbjct: 625 QKMFTSNLDDKDSYLNKEMDPAFRRLVTAFNFDTDGNILREDRSSIQTRRGLYETLDNYL 684
Query: 124 QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFL 183
++ +E + + YF++ S + D + +++ +F I + +
Sbjct: 685 TQTLETQAGEENAGVRLALYFKRMAAGTTSYYSILADTAIQNFITTTFGIPDELGNAGVD 744
Query: 184 KDV 186
V
Sbjct: 745 TQV 747
>gi|319781688|ref|YP_004141164.1| hypothetical protein Mesci_1961 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167576|gb|ADV11114.1| protein of unknown function DUF1217 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 603
Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 145/617 (23%), Positives = 243/617 (39%), Gaps = 66/617 (10%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
++ V ++KY+ NI K+ S+D K+ RL Y ++++ + + F+ L
Sbjct: 20 DRIEQQPVVDRDTKYYLDNITKVKSIDDFVKNDRLFKYAMKAYGLEDMAYAKAFMVKALK 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+++P + + D R+ F F +G+ + + + + + SNY
Sbjct: 80 EGVSDPNSFANKLTDKRYAEFVRAFNFAANGTSTT----VYNKAQQLVTSNYALQVQIGA 135
Query: 249 PI------VSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
S+ YY I V S D + D +L ++ F L+ + M E
Sbjct: 136 SQKGLPYYQSETAYYVTNIAKVKSVDDLMGDSRLLTY-AMAAFGLDAATEPAATVKAMLE 194
Query: 303 ND-----------PIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDD 351
P S K+ +F + T ++ D Q Q + Y + +
Sbjct: 195 GGVSDPDSPANKLPDKSYAKFVAAFDFAQYG-DQTTMRDDVQ-QAVPKGYMAGAGLTLVE 252
Query: 352 KMQSLIKD----YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
IK Y + K+ SIDNL++ K L FA+ +Y L+
Sbjct: 253 PSAQYIKGEADYYAANISKVTSIDNLMADKR-------------LLTFAMASYGLDASTE 299
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
Q+R +L SDP+S ANK D R AFNF G +D K
Sbjct: 300 TPQQIRTMLEGGVSDPESPANKLTDKRYANFVTAFNFAQYGDQTTSR----DEVQKDTPK 355
Query: 468 HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRIL 527
Y A N + I SE YY N+ + S ++L+AN R+
Sbjct: 356 IYTTESALGLIAPNADY---------------IKSETAYYLANVTNVKSVDDLMANSRLY 400
Query: 528 NFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHK 587
N++L + G+D +D + + ++D S AN + Y + ++FNF+ +GE +
Sbjct: 401 NYVLSAYGLDPATESKDLIRNVLAGGIRDADSVANKMTNKAYAGLAAAFNFEQYGEAATT 460
Query: 588 KIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLF 647
Q T D Y Q +E+ + + + LALYF R P I + Y++L D+ L
Sbjct: 461 INPAQQP------TVDKYMRQTLEEDAGQTNQGVRLALYFDRKAPTITSWYDVLADTALA 514
Query: 648 KVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKA 707
VV L L FA K+ ++ ++ + I+DF D +K+ FL +M + A
Sbjct: 515 SVVRTVLGLPDSFATADVDKQAQLFEQKLDISDFSDPEKLGKFLTRFTSMYEINNPTSSA 574
Query: 708 LFSSPNQNKDPWNNSFD 724
+ S P
Sbjct: 575 VTSVSVLFAQPLTVGIS 591
Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats.
Identities = 121/591 (20%), Positives = 223/591 (37%), Gaps = 66/591 (11%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ + + ++DI SK + + P+V + +YY + I + +ID+F+K+ RLF YA+
Sbjct: 1 MLNTFTSYQLITRDI-SKSIDRIEQQPVVDRDTKYYLDNITKVKSIDDFVKNDRLFKYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA+GL DM++A+ F+ K L+ +SDP S N+L +Y F R+++F+ +
Sbjct: 60 KAYGLEDMAYAKAFMVKALKEGVSDPNSFANKLTDKRYAEFVRAFNFAANGTSTTVYNKA 119
Query: 120 KTIIQDYKQSHQHKEEVAL------EESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSI 173
+ ++ E+ Y+ NI K+ SVD L D RLL Y + +F +
Sbjct: 120 QQLVTSNYALQVQIGASQKGLPYYQSETAYYVTNIAKVKSVDDLMGDSRLLTYAMAAFGL 179
Query: 174 TPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKR--DKILTDM 231
+K +L G+++P + D + F F G + D
Sbjct: 180 DAATEPAATVKAMLEGGVSDPDSPANKLPDKSYAKFVAAFDFAQYGDQTTMRDDVQQAVP 239
Query: 232 QIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEI 291
+ + I + +YY I+ V+S + + D +L ++ + L+
Sbjct: 240 KGYMAGAGLTLVEPSAQYIKGEADYYAANISKVTSIDNLMADKRLLT-FAMASYGLDAST 298
Query: 292 TADKFLTLMQEND-----------PIVSQVKYFFQINFHRDN---SSSTKIQQDSQIQKM 337
+ + M E + NF + +S ++Q+D+
Sbjct: 299 ETPQQIRTMLEGGVSDPESPANKLTDKRYANFVTAFNFAQYGDQTTSRDEVQKDTPKIYT 358
Query: 338 LDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFAL 397
+ D ++S Y + +KS+D+L++ + L
Sbjct: 359 TESALGLIAPNA-DYIKSETAYYLANVTNVKSVDDLMANSR-------------LYNYVL 404
Query: 398 DAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQ 457
AY L+ +D +RNVL D DS ANK + L AFNF G
Sbjct: 405 SAYGLDPATESKDLIRNVLAGGIRDADSVANKMTNKAYAGLAAAFNFEQYGEAATTINPA 464
Query: 458 SRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSF 517
+ T+ ++ + Y+ TI S+
Sbjct: 465 QQPTVDKYMRQTLEE--------------------DAGQTNQGVRLALYFDRKAPTITSW 504
Query: 518 EELLANKRILNFLLESKGIDS-------QKVREDFLCEIFKSDLKDPKSFA 561
++LA+ + + + G+ K + F ++ SD DP+
Sbjct: 505 YDVLADTALASVVRTVLGLPDSFATADVDKQAQLFEQKLDISDFSDPEKLG 555
>gi|86356543|ref|YP_468435.1| hypothetical protein RHE_CH00897 [Rhizobium etli CFN 42]
gi|86280645|gb|ABC89708.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 1110
Score = 368 bits (945), Expect = 2e-99, Method: Composition-based stats.
Identities = 162/681 (23%), Positives = 284/681 (41%), Gaps = 58/681 (8%)
Query: 29 SCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSL 88
+ ++ I +++ +D+ + D SY + ++D L S L DP +
Sbjct: 453 AANAAHFNSMIGNVTNVDDIMSDPVAVSYLRTSMQIADSVSDAT-----LRSFLVDPAAA 507
Query: 89 VNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNI 148
Q Y ++F V A + + Y++ I
Sbjct: 508 SAQ----GYSDVHDLFNFKTDGSVAT------LYATQSAAQSASTASKADDAAVYYQATI 557
Query: 149 HKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRA 208
I++VDQL DRRL +++ ++ I P +S L+ +LT +S +
Sbjct: 558 AGISNVDQLLSDRRLNNFIRNAYGI-PSTVSDVDLRAILTD----------QSGTGTYAD 606
Query: 209 MAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFS 268
+A F F+ DGSL T QI T + + + Y + +S+
Sbjct: 607 VAAAFNFKADGSLEDGMAAQTAAQI----------TNTKIAATARTDDYSARVARISNVD 656
Query: 269 DFLKDPKLFKMLQLSLFPLNPEITAD-KFLTLMQENDPIVSQVKYFFQINFHRDNSSS-- 325
D + DP + L+ + AD K + NF D S
Sbjct: 657 DLIADPAITNFLKSTYNLPFDITDADLKSILTDATAAAAAGYSDLNADFNFAADGSLPVV 716
Query: 326 TKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL---------PLGKIKSIDNLLSG 376
+ IQ Q Q D Y D+ ++ + +Y+ +K++++ L
Sbjct: 717 SSIQTADQAQTTNDNYMARYDDERDEAIEEVADNYKSMMADSSSLLNFSDVKTVNDFLRT 776
Query: 377 KCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLI 436
+ S + AL A+ L QD+ R +R +LTS+ DPD Y KD+R+
Sbjct: 777 NRSADFTKSNDNLPDLYHVALQAFGLTDQDVPRSMMRKILTSDAYDPDGYIASLKDERIT 836
Query: 437 KLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRI 496
L AFNF DG + T+ Y + A + +
Sbjct: 837 NLARAFNFGPDGKAASPLQALPQATMAKYATDYKAHVTMLLKAGP----------VKDKA 886
Query: 497 NLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKD 556
+ + +EVDY+ + + S ++ L + R+ + +L++ +D + + L +IF SD D
Sbjct: 887 SKDATAEVDYFAKGMAKVQSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDD 946
Query: 557 PKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEE 616
KS+ NT D R+K+I+++FNFD G L+ KIG +Q+ ++T +LY Q +E ++ E
Sbjct: 947 KKSYLNTKADARFKDIVAAFNFDKDGNLTRAKIGAIQNKAAEENTQELYIKQTLETQQGE 1006
Query: 617 KDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI 676
+ + LALYF R P+I + Y ILGD L++V++ L + + K+ ++ + +
Sbjct: 1007 SNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVAKQADLINRFV 1066
Query: 677 KINDFKDSKKVEDFLYAAKAM 697
K++D +D KKV+ L AM
Sbjct: 1067 KLDDLQDPKKVDKLLRRFTAM 1087
Score = 363 bits (930), Expect = 1e-97, Method: Composition-based stats.
Identities = 164/723 (22%), Positives = 294/723 (40%), Gaps = 122/723 (16%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + +A + + V+ V + +YY + I + +D+F+ D RL+SYA+K
Sbjct: 1 MITASLAYTILSKDMTSSLNKVAAQATVKKDAQYYADNINKVKDVDDFLGDYRLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPEKDVQTDAQED 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I YKQS ++ A ES Y+ NI + +VD L + RL YVL++F I P Y S
Sbjct: 121 ELIGLYKQSFVDADKAAATESTYYSNNIDSVQTVDDLVDNARLRTYVLKAFKIDPTYASK 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FL+ VLT L++P ++++A+A F F DG+++ T Q I+ Y
Sbjct: 181 DFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFSFNADGTVN--GSAQTATQKASIIETY 238
Query: 241 FNNTIDCV---------------PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
N+ + +Q YY I ++++ D + D +L ++ + +
Sbjct: 239 TLNSQSVIIDNSVGSDVVYVSKTAAEYNQAYYTAKIGTITNVDDLVADSRLTSYIKTA-Y 297
Query: 286 PLNPEITADKFLTLMQENDPIVSQVKYFFQ----INFHRDNSSSTK--IQQDSQIQKMLD 339
+ + TA T++ DP +Q+ F NF D ++ST Q Q K+ D
Sbjct: 298 SMGADFTAAALRTVL--TDPGYAQLMGFTNVYNAFNFKADGTTSTTARAQTIDQSNKLKD 355
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
+ I ++D+LL+ + ++ DA
Sbjct: 356 AAASTANYYSVTSRST----------SITNVDDLLADS-------------VLARYIKDA 392
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSR 459
Y L +L+++LT D + D LN FNF ADGSI +
Sbjct: 393 YGLGT-SFSNAELKSILT----DSTYATAQGHAD----LNADFNFQADGSINGSMIQTD- 442
Query: 460 LTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEE 519
+ +K + + ++ I + + ++
Sbjct: 443 -------------------------------AQRKSTTDKSAANAAHFNSMIGNVTNVDD 471
Query: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
++++ +++L S ++ + +S L DP + + Y ++ FNF
Sbjct: 472 IMSDPVAVSYLRT-----SMQIADSVSDATLRSFLVDPAAASAQ----GYSDVHDLFNFK 522
Query: 580 IHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYE 639
G ++ LY Q + A+Y++ TI I N +
Sbjct: 523 TDGSVAT-----------------LYATQSAAQSASTASKADDAAVYYQATIAGISNVDQ 565
Query: 640 ILGDSKLFKVVSKKLKLSPYFAVLPE------RKKIRILKKHIKINDFKDSKKVEDFLYA 693
+L D +L + + + + + +FK +ED + A
Sbjct: 566 LLSDRRLNNFIRNAYGIPSTVSDVDLRAILTDQSGTGTYADVAAAFNFKADGSLEDGMAA 625
Query: 694 AKA 696
A
Sbjct: 626 QTA 628
>gi|241203339|ref|YP_002974435.1| hypothetical protein Rleg_0592 [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240857229|gb|ACS54896.1| protein of unknown function DUF1217 [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 1111
Score = 368 bits (943), Expect = 3e-99, Method: Composition-based stats.
Identities = 161/711 (22%), Positives = 284/711 (39%), Gaps = 62/711 (8%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
S + ++ I +++ +D+ + D SY + ++D ++ ++
Sbjct: 440 QTAAQRKSTTDKSAANAAHFNSMIGNVTNVDDIMSDAVAVSYIRNSMQIADSV-SDATLR 498
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEE 135
L + Y ++F V
Sbjct: 499 TFLVDRTAASA--------QGYSDVHDLFNFKSDGSVPT------LYASQSATQSASTTS 544
Query: 136 VALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPK 195
A + + Y++ I I++VDQL D++L ++V +F I + L+++LT
Sbjct: 545 KASDAAVYYQATIAGISNVDQLLADQKLNNFVRNAFGIPSTVTDVA-LRNILTD------ 597
Query: 196 KYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN 255
+S + +A F F+ DG+L + T QI T D
Sbjct: 598 ----QSGTGTYADVAGAFNFKADGTLEDGLQAQTATQISSTKFAAEARTDD--------- 644
Query: 256 YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD-KFLTLMQENDPIVSQVKYFF 314
Y + ++++ D L D + L+ + AD K +
Sbjct: 645 -YSARMATIANVDDLLADSAITNFLKSTYNLPFDISDADLKSILTDATAAAAAGHADLNA 703
Query: 315 QINFHRDNSSS--TKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL---------P 363
NF D S + +Q Q Q D Y D+ + + +YQ
Sbjct: 704 DFNFAADGSLPVVSSVQTADQAQTTNDNYAARYDDERDEALDEVASNYQKLMADSSSLLN 763
Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDP 423
+KS+++ L + S + AL A+ L QD+ R +R VLTS+ DP
Sbjct: 764 FSDVKSVNDFLRSNSAADFSKSNDNLPDLYHVALQAFGLTDQDVPRSMMRKVLTSDAYDP 823
Query: 424 DSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKS 483
D Y KD+R+ L AFNF DG T+ Y + +
Sbjct: 824 DGYIASLKDERITNLARAFNFGPDGKAASPFQALPDATLAKYATDYKSHITML------- 876
Query: 484 FNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRE 543
M+ + + + +EVDY+ + + S ++ L + R+ + +L++ +D + +
Sbjct: 877 ---MKDGPVKDKAAKDATAEVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDK 933
Query: 544 DFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCD 603
L +IF SD D KS+ NT D R+++I+++FNFD G L+ KIG +Q+ + T +
Sbjct: 934 ATLKKIFTSDPDDKKSYLNTKADARFQDIVAAFNFDKDGNLTRAKIGTIQNKAAEEHTQE 993
Query: 604 LYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVL 663
LY Q +E ++ E + + LALYF R P+I + Y ILGD L++V++ L + +
Sbjct: 994 LYVQQTMEAQQGESNDGVRLALYFARKAPSITSIYSILGDKALYQVITTAYNLPSQISGM 1053
Query: 664 PERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQ 714
K+ +L + +K+ D +D KKV+ L AM D + A SP
Sbjct: 1054 DVTKQRDLLSRFVKLEDLQDPKKVDKLLRRFTAM----YDVQNAAQQSPAL 1100
Score = 361 bits (925), Expect = 3e-97, Method: Composition-based stats.
Identities = 161/731 (22%), Positives = 293/731 (40%), Gaps = 122/731 (16%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + +A + + V+ V + +YY + I ++++D+F+ D +L+SYA+K
Sbjct: 1 MITASLAYTILSRDMTSSLNKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNEPAKDVQTDAQED 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I YKQS ++ A ES Y+ I + +VD L + RL YVL++F I P Y S
Sbjct: 121 DLIGLYKQSFIDADKAASAESSYYGTAIDGVTTVDDLVNNTRLRTYVLKTFKIDPTYASK 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FL+ VLT L++P ++++A+A F F DG+++ T Q ++ Y
Sbjct: 181 DFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFGFNADGTVN--GTAQTAAQKASVIETY 238
Query: 241 FNNTIDCV---------------PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
N+ + ++ YY I ++++ D + D +L + + +
Sbjct: 239 TLNSQSVIIDNSVGSDVYYVGKTAADYNKAYYTAKIGTITNVDDLVADKRLTSYITTA-Y 297
Query: 286 PLNPEITADKFLTLMQENDPIVSQVKYFFQ----INFHRDNSSSTK--IQQDSQIQKMLD 339
+ + TA T++ DP +Q+ F NF D S+S+ +Q Q +
Sbjct: 298 SMGADFTAAALRTVL--TDPGYAQLMGFTNVYNAFNFKADGSTSSTARVQTVDQANSLQA 355
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
I ++D LL+ + ++ DA
Sbjct: 356 AASGTKNYYTVTSQS----------SGITNVDALLADN-------------VLARYIKDA 392
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSR 459
Y L L+++LT D A + D LN FNF ADGSI +
Sbjct: 393 YGLGT-SFSNADLKSILT----DSTYAAAQGHAD----LNADFNFQADGSINGSVI---- 439
Query: 460 LTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEE 519
+ + +K + + ++ I + + ++
Sbjct: 440 ----------------------------QTAAQRKSTTDKSAANAAHFNSMIGNVTNVDD 471
Query: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
++++ ++++ S ++ + ++ L D + + Y ++ FNF
Sbjct: 472 IMSDAVAVSYIRN-----SMQIADSVSDATLRTFLVDRTAASAQ----GYSDVHDLFNFK 522
Query: 580 IHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYE 639
G + LY Q + A+Y++ TI I N +
Sbjct: 523 SDGSVPT-----------------LYASQSATQSASTTSKASDAAVYYQATIAGISNVDQ 565
Query: 640 ILGDSKLFKVVSKKLKLSPYFA------VLPERKKIRILKKHIKINDFKDSKKVEDFLYA 693
+L D KL V + +L ++ +FK +ED L A
Sbjct: 566 LLADQKLNNFVRNAFGIPSTVTDVALRNILTDQSGTGTYADVAGAFNFKADGTLEDGLQA 625
Query: 694 AKAMDHQSIDY 704
A S +
Sbjct: 626 QTATQISSTKF 636
>gi|116250732|ref|YP_766570.1| hypothetical protein RL0958 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255380|emb|CAK06455.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 1109
Score = 367 bits (941), Expect = 5e-99, Method: Composition-based stats.
Identities = 163/731 (22%), Positives = 297/731 (40%), Gaps = 122/731 (16%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + +A + + V+ V + +YY + I + +D+F+ D +L+SYA+K
Sbjct: 1 MISASLAYTILSRDMTSSLNKVASQATVKKDAQYYADHINKVENVDDFLGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPEKDVQTDAQED 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I YKQS ++ A ES Y+ NI + +VD L + RL YVL++F+I P Y S
Sbjct: 121 DLIGLYKQSFVDADKAASAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFNIDPTYASK 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FL+ VLT L++P ++++A+A F F DG+++ T Q ++ +Y
Sbjct: 181 DFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFSFNADGTVT--GTAQTAAQKASVIESY 238
Query: 241 FNNTID---------------CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
N+ ++ YY I ++++ D + D +L + + +
Sbjct: 239 TLNSQSVIIDNSVGSDVYYVGQTAADYNKAYYTAKIGTITNVDDLVADKRLTSYITTA-Y 297
Query: 286 PLNPEITADKFLTLMQENDPIVSQVKYFFQ----INFHRDNSSSTK--IQQDSQIQKMLD 339
+ + TA T++ DP +Q+ F NF D S+S+ +Q Q + +
Sbjct: 298 SMGADFTAAALRTVL--TDPGYAQLMGFTNVYNAFNFKADGSASSTARVQTVDQANSLKN 355
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
+ I ++D+LL+ + ++ DA
Sbjct: 356 AATMTGNYYTTTSQST----------GITNVDDLLADN-------------VLARYIKDA 392
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSR 459
Y L L+N+LT D A + D LN FNF ADGSI
Sbjct: 393 YGLGTD-FSNADLKNILT----DSAYAAAQGHAD----LNADFNFQADGSING------- 436
Query: 460 LTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEE 519
I+ + + +S +A + + I + + ++
Sbjct: 437 SVIQTAAQRKSTTDKSAVNAAH-------------------------FNSMIGNVTNVDD 471
Query: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
++++ ++++ S ++ + ++ L D + + Y ++ FNF
Sbjct: 472 IMSDAVAVSYIRN-----SMQIADSVSDATLRTFLVDRTAASAQ----GYSDVHDLFNFK 522
Query: 580 IHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYE 639
G ++ LY Q + A+Y++ TI I N +
Sbjct: 523 SDGSIAT-----------------LYASQTATQSASTTSKADNAAVYYQSTIAGISNVDQ 565
Query: 640 ILGDSKLFKVVSKKLKLSPYFAVLPE------RKKIRILKKHIKINDFKDSKKVEDFLYA 693
+L D KL V + + + + +FK +ED + A
Sbjct: 566 LLADQKLNNFVRNAYGIPSTVSDVDLRAILTDQSGTGTYADVAAAFNFKADGTLEDGMAA 625
Query: 694 AKAMDHQSIDY 704
A S +
Sbjct: 626 QTATQISSTKF 636
Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats.
Identities = 155/695 (22%), Positives = 279/695 (40%), Gaps = 62/695 (8%)
Query: 32 ERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQ 91
++ I +++ +D+ + D SY + ++D ++ ++ L +
Sbjct: 456 AAHFNSMIGNVTNVDDIMSDAVAVSYIRNSMQIADSV-SDATLRTFLVDRTAASA----- 509
Query: 92 LNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKI 151
Y ++F + A + Y++ I I
Sbjct: 510 ---QGYSDVHDLFNFKSDGSIAT------LYASQTATQSASTTSKADNAAVYYQSTIAGI 560
Query: 152 NSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAE 211
++VDQL D++L ++V ++ I P +S L+ +LT +S + +A
Sbjct: 561 SNVDQLLADQKLNNFVRNAYGI-PSTVSDVDLRAILTD----------QSGTGTYADVAA 609
Query: 212 NFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFL 271
F F+ DG+L T QI T D Y ++++S+ D L
Sbjct: 610 AFNFKADGTLEDGMAAQTATQISSTKFAATARTDD----------YSARMSTISNVDDLL 659
Query: 272 KDPKLFKMLQLSLFPLNPEITAD-KFLTLMQENDPIVSQVKYFFQINFHRDNSSS--TKI 328
D + L+ + AD K + NF D S + +
Sbjct: 660 ADSAITNFLKSTYNLPFNISDADLKSILTDATAAAAAGHADLNADFNFAADGSLPVVSSV 719
Query: 329 QQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL---------PLGKIKSIDNLLSGKCQ 379
Q Q Q D Y D+ + + +YQ + S+++ L
Sbjct: 720 QTADQAQTTNDNYAARYDDERDEAIDEVASNYQKLMADSSSLLNFSDVNSVNDFLRSNSA 779
Query: 380 LEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLN 439
+ S + AL A+ L Q++ R +R +LTS+ DPD Y KD+R+ L
Sbjct: 780 ADFSKSNDNLPDLFHVALQAFGLTDQEVSRSMMRKILTSDAYDPDGYVASLKDERITNLA 839
Query: 440 HAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLE 499
AFNF DG T+ Y + + M+ + + +
Sbjct: 840 RAFNFGPDGKAASPFQALPDATMAKYATDYRSHITML----------MKDGPVKDKAAKD 889
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+EVDY+ + + S ++ L + R+ + +L++ +D + + L +IF SD D KS
Sbjct: 890 ATAEVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDDKKS 949
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
+ N D R+++I+++FNFD G L+ KIG +Q+ + T +LY Q +E ++ E +
Sbjct: 950 YLNATADARFQDIVAAFNFDKDGNLTRAKIGTIQNKAAEEHTQELYVQQTMEAQQGESND 1009
Query: 620 NIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN 679
+ LALYF R +I + Y ILGD L++V++ L + + K+ ++ + +K+
Sbjct: 1010 GVRLALYFSRKASSITSIYGILGDKALYQVITTAYSLPSQISGMDVAKQADLINRFVKLE 1069
Query: 680 DFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQ 714
D +D KKV+ L AM D + A SP
Sbjct: 1070 DLQDPKKVDKLLRRFTAM----YDVQNATQQSPAL 1100
Score = 99.2 bits (245), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 31 EERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVN 90
E Y+ + + + ++D+F+ D RL LKA L + + +KKI SD D KS +N
Sbjct: 893 EVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLN 952
Query: 91 QLNSLKYQYFARSYDFSPPPKVIQSDI-----------QHKTIIQDYKQSHQHKEEVALE 139
++Q +++F + ++ I + +Q ++ Q + +
Sbjct: 953 ATADARFQDIVAAFNFDKDGNLTRAKIGTIQNKAAEEHTQELYVQQTMEAQQGESNDGVR 1012
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+ YF + I S+ + D+ L + ++S+ + + K
Sbjct: 1013 LALYFSRKASSITSIYGILGDKALYQVITTAYSLPSQISGMDVAKQA 1059
>gi|327188120|gb|EGE55342.1| hypothetical protein RHECNPAF_944004 [Rhizobium etli CNPAF512]
Length = 1111
Score = 366 bits (940), Expect = 7e-99, Method: Composition-based stats.
Identities = 163/729 (22%), Positives = 296/729 (40%), Gaps = 122/729 (16%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + +A + + V+ V + +YY + I + +D+F+ D +L+SYA+K
Sbjct: 1 MITASLAYSILSKDMTSSLNKVASQATVKKDAQYYADHINKVKDVDDFLGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPDKDVQTDAQED 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I YKQS ++ A ES Y+ NI + +VD L + RL YVL++F I P Y S
Sbjct: 121 DLIGLYKQSFVDADKAAAAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYASK 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FL+ VLT L++P ++++A+A F F DG+++ T Q ++ Y
Sbjct: 181 DFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFSFNADGTVT--GTAQTAAQKASVIETY 238
Query: 241 FNNTIDCV---------------PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
N+ + ++ YY I ++++ D + D +L ++ + +
Sbjct: 239 TLNSQSVIIDNSVGSDVVYVSKTAADYNKAYYTAKIGTITNVDDLVADARLTSYIKTA-Y 297
Query: 286 PLNPEITADKFLTLMQENDPIVSQVKYFFQ----INFHRDNSSSTK--IQQDSQIQKMLD 339
+ + TA ++ DP +Q+ F NF D S+ST Q Q K+
Sbjct: 298 SMGADFTAPALRMVL--TDPSYAQLMGFTNVYNAFNFKADGSTSTTARAQTIDQANKLAS 355
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
I ++D+LL+ + ++ DA
Sbjct: 356 AASSTANYYSVTSQS----------SGITNVDDLLADS-------------VMARYIKDA 392
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSR 459
Y L + + +L+N+LT SYA LN FNFNADGSI +
Sbjct: 393 YGLGV-NFSNAELKNILT-----DSSYAAAQGQ---AGLNADFNFNADGSINGSVI---- 439
Query: 460 LTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEE 519
+ + +K + + ++ I + + ++
Sbjct: 440 ----------------------------QTAAQRKSTTDKSAANAAHFNAMIGNVTNVDD 471
Query: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
++++ +++L S ++ + ++ L DP + + Y ++ FNF
Sbjct: 472 IMSDPVAVSYLRT-----SMQIADSVSDATLRTFLVDPAAASAQ----GYSDVHDLFNFK 522
Query: 580 IHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYE 639
G ++ L+ Q + + A+Y++ TI I N +
Sbjct: 523 TDGSVAT-----------------LHATQTAAQSANTTSKADSAAVYYQSTIAGISNVDQ 565
Query: 640 ILGDSKLFKVVSKKLKLSPYFAVLPE------RKKIRILKKHIKINDFKDSKKVEDFLYA 693
+L D KL V + + + +FK +ED L A
Sbjct: 566 LLADQKLNNFVRNAYGIPSTVTDVDLRNILTDQSGTGTYADVAAAFNFKADGSLEDGLAA 625
Query: 694 AKAMDHQSI 702
+ +
Sbjct: 626 QTSSQTTNT 634
Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats.
Identities = 155/694 (22%), Positives = 286/694 (41%), Gaps = 58/694 (8%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
S + ++ I +++ +D+ + D SY + ++D ++ ++
Sbjct: 440 QTAAQRKSTTDKSAANAAHFNAMIGNVTNVDDIMSDPVAVSYLRTSMQIADSV-SDATLR 498
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEE 135
L DP + Q Y ++F V +
Sbjct: 499 TFL----VDPAAASAQ----GYSDVHDLFNFKTDGSVATLHATQTAA------QSANTTS 544
Query: 136 VALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPK 195
A + Y++ I I++VDQL D++L ++V ++ I + L+++LT
Sbjct: 545 KADSAAVYYQSTIAGISNVDQLLADQKLNNFVRNAYGIPSTVTDVD-LRNILTD------ 597
Query: 196 KYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN 255
+S + +A F F+ DGSL T Q T + + +
Sbjct: 598 ----QSGTGTYADVAAAFNFKADGSLEDGLAAQTSSQ----------TTNTKIAAGARTD 643
Query: 256 YYKLAINSVSSFSDFLKDPKLFKMLQLSLF-PLNPEITADKFLTLMQENDPIVSQVKYFF 314
Y + ++++ + + DP + L+ + P + K +
Sbjct: 644 DYSSRMATIANVDELIADPAITNFLKSTYNLPFDISDAELKSILTDATAAAAAGHADLNA 703
Query: 315 QINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL---------P 363
NF D S + + +Q Q Q D Y D+ ++ + +Y
Sbjct: 704 DFNFAADGSLPAVSSVQTADQAQTTNDNYMARYDDERDEAIEEVADNYSSMMADSTSLLD 763
Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDP 423
+IK++++ L + S ++ AL A+ L Q++ R +R +LTS+ DP
Sbjct: 764 TAEIKTVNDFLRTNAAADFKKSNDKLPDPYHVALQAFGLTDQEVPRSMMRKILTSDAYDP 823
Query: 424 DSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKS 483
+ Y KD+R+ L AFNF DG T+ Y + A
Sbjct: 824 NGYIASLKDERITNLARAFNFGPDGKAAAPLQALPDATLAKYATDYKAHVTMLLKAGP-- 881
Query: 484 FNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRE 543
+ + + + +EVDY+ + + S ++ LA+ R+ + +L++ +D +K +
Sbjct: 882 --------VKDKASKDATTEVDYFAKGMAKVQSLDDFLADSRLTDLVLKANNLDPKKYDK 933
Query: 544 DFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCD 603
L +IF SD D KS+ NT D R+K+I+++FNFD G L+ KIG +Q+ T D
Sbjct: 934 ATLEKIFTSDPDDKKSYLNTKADARFKDIVAAFNFDKDGNLTRAKIGTIQNKAAEAHTQD 993
Query: 604 LYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVL 663
LY Q +E ++ E + + LALYF R P+I + Y ILGD L++V++ L + +
Sbjct: 994 LYVKQTLETQQGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSM 1053
Query: 664 PERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
K+ ++ + +K+ D +D KKV+ L AM
Sbjct: 1054 DVAKQADLINRFVKLEDLQDPKKVDKLLRRFTAM 1087
>gi|190890609|ref|YP_001977151.1| hypothetical protein RHECIAT_CH0000988 [Rhizobium etli CIAT 652]
gi|190695888|gb|ACE89973.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 1111
Score = 366 bits (938), Expect = 1e-98, Method: Composition-based stats.
Identities = 165/729 (22%), Positives = 296/729 (40%), Gaps = 122/729 (16%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + +A + + V+ V + +YY + I + +D+F+ D +L+SYA+K
Sbjct: 1 MITASLAYSILSKDMTSSLNKVASQATVKKDAQYYADHINKVKDVDDFLGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFAAAFNFNAPDKDVQTDAQED 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I YKQS ++ A ES Y+ NI + +VD L + RL YVL++F I P Y S
Sbjct: 121 DLIGLYKQSFVDADKAAAAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYASK 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FL+ VLT L++P ++++A+A F F DG+++ T Q + Y
Sbjct: 181 DFLRQVLTSDLSDPASVVNTQGGDKYKALAAQFSFNADGTVT--GTAQTAAQKASAIETY 238
Query: 241 FNNTIDCV---------------PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
N+ + +Q YY I ++++ D + D +L ++ + +
Sbjct: 239 TLNSQSVIIDNAVGSDVVYVSKTAADYNQAYYTAKIGTITNVDDLVADARLTSYIKTA-Y 297
Query: 286 PLNPEITADKFLTLMQENDPIVSQVKYFFQ----INFHRDNSSSTK--IQQDSQIQKMLD 339
+ + TA ++ DP +Q+ F NF D S+ST Q Q K+
Sbjct: 298 SMGADFTAPALRMVL--TDPSYAQLMGFTNVYNAFNFKSDGSTSTTARAQTIDQANKLAS 355
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
I ++D+LL+ + ++ DA
Sbjct: 356 AASSTANYYSVTSQS----------SGITNVDDLLADS-------------VMARYIKDA 392
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSR 459
Y L + + +L+N+LT SYA LN FNFNADGSI +
Sbjct: 393 YGLGV-NFSNAELKNILT-----DSSYAAAQGQ---AGLNADFNFNADGSINGSVI---- 439
Query: 460 LTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEE 519
+ + +K + + ++ I ++ + ++
Sbjct: 440 ----------------------------QTAAQRKSTTDKSAANAAHFNAMIGSVTNVDD 471
Query: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
++++ +++L S ++ + ++ L DP + + Y ++ FNF
Sbjct: 472 IMSDPVAVSYLRT-----SMQIADSVSDATLRTFLVDPAAASAQ----GYSDVHDLFNFK 522
Query: 580 IHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYE 639
G ++ LY Q + + A+Y++ TI I N +
Sbjct: 523 TDGSVAT-----------------LYATQTAAQSANTTSKADSAAVYYQSTIAGISNVDQ 565
Query: 640 ILGDSKLFKVVSKKLKLSPYFAVLPE------RKKIRILKKHIKINDFKDSKKVEDFLYA 693
+L D KL V + + + +FK +ED L A
Sbjct: 566 LLADQKLNNFVRNAYGIPATVTDVDLRNILTDQSGTGTYANVAAAFNFKADGSLEDGLAA 625
Query: 694 AKAMDHQSI 702
+ +
Sbjct: 626 QTSSQTTNT 634
Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats.
Identities = 154/694 (22%), Positives = 284/694 (40%), Gaps = 58/694 (8%)
Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75
S + ++ I ++ +D+ + D SY + ++D ++ ++
Sbjct: 440 QTAAQRKSTTDKSAANAAHFNAMIGSVTNVDDIMSDPVAVSYLRTSMQIADSV-SDATLR 498
Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEE 135
L DP + Q Y ++F V +
Sbjct: 499 TFL----VDPAAASAQ----GYSDVHDLFNFKTDGSVAT------LYATQTAAQSANTTS 544
Query: 136 VALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPK 195
A + Y++ I I++VDQL D++L ++V ++ I + L+++LT
Sbjct: 545 KADSAAVYYQSTIAGISNVDQLLADQKLNNFVRNAYGIPATVTDVD-LRNILTD------ 597
Query: 196 KYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN 255
+S + +A F F+ DGSL T Q T + + +
Sbjct: 598 ----QSGTGTYANVAAAFNFKADGSLEDGLAAQTSSQ----------TTNTKIAAGARTD 643
Query: 256 YYKLAINSVSSFSDFLKDPKLFKMLQLSLF-PLNPEITADKFLTLMQENDPIVSQVKYFF 314
Y + ++++ + + DP + L+ + P + K +
Sbjct: 644 DYSSRMATIANVDELIADPAITNFLKSTYNLPFDISDAELKSILTDATAAAAAGHADLNA 703
Query: 315 QINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL---------P 363
NF D S + + +Q Q Q D Y D+ ++ + +Y
Sbjct: 704 DFNFAADGSLPAVSSVQTADQAQTTNDNYMARYDDERDEAIEEVADNYSSMMADSTSLLD 763
Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDP 423
+IK++++ L + S ++ AL A+ L Q++ R +R +LTS+ DP
Sbjct: 764 TAEIKTVNDFLRTNAAADFKKSNDKLPDPYHVALQAFGLTDQEVPRSMMRKILTSDAYDP 823
Query: 424 DSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKS 483
+ Y KD+R+ L AFNF DG T+ Y + A
Sbjct: 824 NGYIASLKDERITNLARAFNFGPDGKAAAPLQALPDATLAKYATDYKAHVTMLLKAGP-- 881
Query: 484 FNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRE 543
+ + + + +EVDY+ + + S ++ LA+ R+ + +L++ +D + +
Sbjct: 882 --------VKDKASKDATTEVDYFAKGMAKVQSLDDFLADSRLTDLVLKANNLDPKDYDK 933
Query: 544 DFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCD 603
L +IF SD D KS+ NT D R+K+I+++FNFD G L+ KIG +Q+ T D
Sbjct: 934 ATLKKIFTSDPDDKKSYLNTKADARFKDIVAAFNFDKDGNLTRAKIGAIQNKAAEAHTQD 993
Query: 604 LYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVL 663
LY Q +E ++ E + + LALYF R P+I + Y ILGD L++V++ L + +
Sbjct: 994 LYVKQTLETQQGESNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSM 1053
Query: 664 PERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
K+ ++ + +K+ D +D KKV+ L AM
Sbjct: 1054 DVAKQADLINRFVKLEDLQDPKKVDKLLRRFTAM 1087
>gi|209548151|ref|YP_002280068.1| hypothetical protein Rleg2_0545 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533907|gb|ACI53842.1| protein of unknown function DUF1217 [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 1111
Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats.
Identities = 174/774 (22%), Positives = 313/774 (40%), Gaps = 134/774 (17%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + +A + + V+ V + YY + I ++++D+F+ D +L+SYA+K
Sbjct: 1 MITASLAYTILSKDMTSSLNKVASQATVKKDAEYYADHINKVTSVDDFLGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDTRYREFASAFNFNAPEKDVQTDAQED 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I YKQS ++ ES Y+ NI + +VD L + RL YVL++F+I P Y S
Sbjct: 121 DLIGLYKQSFIDADKATTAESTYYSNNIDSVTTVDDLVNNTRLRTYVLKTFNIDPTYASK 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FL+ VLT L++P ++++A+A F F DG+++ T Q ++ Y
Sbjct: 181 DFLRQVLTSDLSDPTSVVNTQGGDKYKALAAQFSFNADGTVT--GTAQTAAQKASVIETY 238
Query: 241 FNNTIDCV---------------PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
N+ + +Q YY I ++++ D + D +L ++ + +
Sbjct: 239 TLNSQSVIIDNSVGSDVVYVNKTAADYNQAYYTAKIGTITNVDDLVADKRLTSYIKTA-Y 297
Query: 286 PLNPEITADKFLTLMQENDPIVSQVKYFFQ----INFHRDNSSSTK--IQQDSQIQKMLD 339
+ + TA T++ DP +Q+ F NF D S+S+ ++ Q K+
Sbjct: 298 SMGADFTAAALRTVL--TDPGYAQLMGFTNVYNAFNFKSDGSTSSTARVRTLDQANKLSS 355
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
+ I ++D LL+ ++ DA
Sbjct: 356 AASQTANYYKVTSQS----------SSITNVDALLADG-------------NMARYIKDA 392
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSR 459
Y L L+N+LT D A + D LN FNF ADGSI +
Sbjct: 393 YGLGTG-FSNADLKNILT----DSAYAAAQGHAD----LNADFNFQADGSINGSVIQTD- 442
Query: 460 LTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEE 519
+ +K + + ++ I+++ S ++
Sbjct: 443 -------------------------------TQRKSTTDKSAANAAHFNAMIDSVTSVDD 471
Query: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
++++ +++L S +V + ++ L DP + + Y ++ FNF
Sbjct: 472 IMSDPVAVSYLRT-----SMQVADSVSDATLRTFLVDPAAASAQ----GYSDVHDLFNFK 522
Query: 580 IHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYE 639
G ++ LY Q + A+Y++ TI I N +
Sbjct: 523 TDGSVAT-----------------LYASQTAAQSASTSSKADNAAVYYQATIAGIANVDQ 565
Query: 640 ILGDSKLFKVVSKKLKLSPYF------AVLPERKKIRILKKHIKINDFKDSKKVEDFLYA 693
+L D KL V + +L ++ +FK ++D L A
Sbjct: 566 LLSDQKLNNFVRNAFGIPSTVTDVALRGILTDQSGTGTYADVAAAFNFKADGSLKDGLAA 625
Query: 694 AK---------AMDHQSIDYKKALFSSPNQN---KDPWNNSFDDPQNNVSLQLS 735
A ++ DY + + N + DP +F N+ L +S
Sbjct: 626 QTDTQIRNTKFAAGARTDDYSARMATIANVDDLIADPAITNFLKSTYNLPLNIS 679
Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats.
Identities = 155/681 (22%), Positives = 276/681 (40%), Gaps = 58/681 (8%)
Query: 29 SCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSL 88
+ ++ I ++++D+ + D SY + ++D ++ ++ L DP +
Sbjct: 453 AANAAHFNAMIDSVTSVDDIMSDPVAVSYLRTSMQVADSV-SDATLRTFL----VDPAAA 507
Query: 89 VNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNI 148
Q Y ++F V A + Y++ I
Sbjct: 508 SAQ----GYSDVHDLFNFKTDGSVAT------LYASQTAAQSASTSSKADNAAVYYQATI 557
Query: 149 HKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRA 208
I +VDQL D++L ++V +F I + L+ +LT +S +
Sbjct: 558 AGIANVDQLLSDQKLNNFVRNAFGIPSTVTDVA-LRGILTD----------QSGTGTYAD 606
Query: 209 MAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFS 268
+A F F+ DGSL TD QI T D Y + ++++
Sbjct: 607 VAAAFNFKADGSLKDGLAAQTDTQIRNTKFAAGARTDD----------YSARMATIANVD 656
Query: 269 DFLKDPKLFKMLQLSLFPLNPEITAD-KFLTLMQENDPIVSQVKYFFQINFHRDNSSS-- 325
D + DP + L+ + AD K NF D S
Sbjct: 657 DLIADPAITNFLKSTYNLPLNISNADLKSYLTDATAASAAGYADLNADFNFAADGSLPVV 716
Query: 326 TKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL---------PLGKIKSIDNLLSG 376
+ +Q Q Q D Y ++ + + +Y +IKS+++ +
Sbjct: 717 SSVQTADQAQTTNDNYMARYDDEREEAIDEVASNYSSMMADSTSLLDTAEIKSVNDFMRT 776
Query: 377 KCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLI 436
+ S + AL A+ L QD+ R +R +LTS+ DP+ Y KD+R+
Sbjct: 777 NATADFKKSNDNLPDPYHVALQAFGLTEQDVPRSMMRKILTSDAYDPNGYIASLKDERIT 836
Query: 437 KLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRI 496
+ AFNF DG T+ Y + A + +
Sbjct: 837 NMARAFNFGPDGKAASPFQALPDATLAKYATDYKAHMTMLLKAGP----------VKDKA 886
Query: 497 NLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKD 556
+ + +EVDY+ + + S ++ L + R+ + +L++ +D + + L +IF SD D
Sbjct: 887 SKDATTEVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDD 946
Query: 557 PKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEE 616
KS+ N D R+K+I+++FNFD G L+ K+G +Q+ + T +LY Q +E ++ E
Sbjct: 947 KKSYLNAKADARFKDIVAAFNFDKDGNLTRAKMGTIQNKAAEEHTQELYVQQTMEAQQGE 1006
Query: 617 KDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI 676
+ + LALYF R P+I + Y ILGD L++VV+ L + + K+ +L + +
Sbjct: 1007 SNDGVRLALYFSRKAPSITSIYSILGDKALYQVVTTAYSLPSQMSGMDVTKQADLLNRFV 1066
Query: 677 KINDFKDSKKVEDFLYAAKAM 697
K+ D +D KKV+ + AM
Sbjct: 1067 KLEDLQDPKKVDKLVRRFTAM 1087
>gi|218674013|ref|ZP_03523682.1| hypothetical protein RetlG_21992 [Rhizobium etli GR56]
Length = 993
Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats.
Identities = 158/681 (23%), Positives = 286/681 (41%), Gaps = 116/681 (17%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + +A + + V+ V + +YY + I ++++D+F+ D +L+SYA+K
Sbjct: 1 MITASLAYSILSKDMTSSLNKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLTDPDSYANKLSDTRYREFAAAFNFNAPEKDVQTDAQED 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I YKQS ++ A ES Y+ NI + +VD L + RL YVL++F I P Y S
Sbjct: 121 ELIGLYKQSFVDADKAAATESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYASK 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FL+ VLT L++P ++++A+A F F DG+++ T Q ++ Y
Sbjct: 181 DFLRQVLTSDLSDPTSIVNTQGGDKYKALAAQFSFNADGTVT--GTAQTAAQKASVIETY 238
Query: 241 FNNTIDCV---------------PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
N+ + ++ YY I ++++ D + D +L ++ + +
Sbjct: 239 TLNSQSVIIDNSVGSDVYYVGKTAAEYNKAYYTAKIGTITNVDDLVADSRLTSYIKTA-Y 297
Query: 286 PLNPEITADKFLTLMQENDPIVSQVKYFFQ----INFHRDNSSS--TKIQQDSQIQKMLD 339
+ + TA T++ DP +Q+ F NF D S+S ++Q Q ++
Sbjct: 298 SMGADFTAAALRTVL--TDPSYAQLMGFTNVYNAFNFKSDGSTSNTARVQSVEQANQLKS 355
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
I ++D+LL+ + ++ DA
Sbjct: 356 AASSTTNYYSVTSQS----------SSITNVDDLLADS-------------VLARYIKDA 392
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSR 459
Y L + + +L+N+LT D A + K LN FNFNADGSI +
Sbjct: 393 YGLGV-NFSNAELKNILT----DSAYAAAQGK----AGLNADFNFNADGSINGSVIQTDT 443
Query: 460 LTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEE 519
K AN ++ I ++ + ++
Sbjct: 444 QRQSTTGKSAAN--------------------------------ATHFNSMIASVTNVDD 471
Query: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
++++ ++++ S ++ + ++ L DP + + Y ++ FNF
Sbjct: 472 IMSDPIAVSYIRN-----SMQIADSVSDATLRTFLVDPAAASAQ----GYSDVHDLFNFK 522
Query: 580 IHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYE 639
G ++ LY Q + A+Y++ TI I N +
Sbjct: 523 TDGSVAT-----------------LYSGQTAAQSASTASKADDAAVYYQATIAGISNVDQ 565
Query: 640 ILGDSKLFKVVSKKLKLSPYF 660
+L D KL V +
Sbjct: 566 LLADQKLNNFVRNAFGIPSTV 586
Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats.
Identities = 127/596 (21%), Positives = 232/596 (38%), Gaps = 58/596 (9%)
Query: 20 STVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILE 79
S + ++ I ++ +D+ + D SY + ++D ++ ++ L
Sbjct: 444 QRQSTTGKSAANATHFNSMIASVTNVDDIMSDPIAVSYIRNSMQIADSV-SDATLRTFL- 501
Query: 80 SDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALE 139
DP + Q Y ++F V A +
Sbjct: 502 ---VDPAAASAQ----GYSDVHDLFNFKTDGSVAT------LYSGQTAAQSASTASKADD 548
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFI 199
+ Y++ I I++VDQL D++L ++V +F I L L+D+LT
Sbjct: 549 AAVYYQATIAGISNVDQLLADQKLNNFVRNAFGIPSTVTDLA-LRDILTD---------- 597
Query: 200 ESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKL 259
+S + +A F F+ DG+L TD Q+ I T D Y
Sbjct: 598 QSGTGTYADVAAAFNFKADGTLEDGMPAQTDSQVTNIKIAATARTND----------YSA 647
Query: 260 AINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD-KFLTLMQENDPIVSQVKYFFQINF 318
+ ++++ D + DP + L+ + AD + + NF
Sbjct: 648 RMGTIANVDDLIADPAITNFLKSTYNLPFNISDADLRSILTDSTAAAAAGYADLNADFNF 707
Query: 319 HRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL---------PLGKI 367
D S + + +Q +Q Q D Y D+ + + +Y+ +I
Sbjct: 708 AADGSLPAVSSVQTAAQAQTTNDNYMARYDDERDEAIAEVASNYKSMMADSTSLLDFSEI 767
Query: 368 KSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYA 427
S+++ L + S + AL A+ L Q++ R +R +LTS+ DPD Y
Sbjct: 768 TSVNDFLRTNSSADFKKSNDNLPDPFHVALQAFGLTDQEVSRSMMRKILTSDAYDPDGYI 827
Query: 428 NKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSM 487
KD+R+ L AFNF DG T+ Y + A
Sbjct: 828 ASLKDERITNLARAFNFGPDGKAASPFQALPDATMAKYATDYKAHMTMLLKAGP------ 881
Query: 488 EQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLC 547
+ + + +EVDY+ + + S ++ L + R+ + +L++ +D + + L
Sbjct: 882 ----VKDKAAKDATAEVDYFAKTMAKVKSLDDFLDDSRLTDLVLKANNLDPEDYDKATLK 937
Query: 548 EIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCD 603
+IF SD D KS+ N+ D R+K+I+++FNFD G L+ KIG +Q+ ++T +
Sbjct: 938 KIFTSDPDDKKSYLNSKADARFKDIVAAFNFDKDGNLTRAKIGTIQNKAAEENTQE 993
Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats.
Identities = 102/623 (16%), Positives = 195/623 (31%), Gaps = 117/623 (18%)
Query: 33 RYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQL 92
YY +I I+ +D+ + D RL SY A+ + A + +L S +
Sbjct: 268 AYYTAKIGTITNVDDLVADSRLTSYIKTAYSMGADFTAAAL-RTVLT-----DPSYAQLM 321
Query: 93 NSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFR--KNIHK 150
+ +++F + + + A + Y+
Sbjct: 322 G---FTNVYNAFNFKSDGSTSNTARVQSV------EQANQLKSAASSTTNYYSVTSQSSS 372
Query: 151 INSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMA 210
I +VD L D L Y+ ++ + S LK++LT Y +
Sbjct: 373 ITNVDDLLADSVLARYIKDAYGL-GVNFSNAELKNILTD-----SAYAAAQGK---AGLN 423
Query: 211 ENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDF 270
+F F DGS++ I TD Q + ++ ++ I SV++ D
Sbjct: 424 ADFNFNADGSIN-GSVIQTDTQRQSTTGKS----------AANATHFNSMIASVTNVDDI 472
Query: 271 LKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIV-SQVKYFFQINFHRDNSSSTKIQ 329
+ DP ++ S+ + A L+ NF D S +T
Sbjct: 473 MSDPIAVSYIRNSMQIADSVSDATLRTFLVDPAAASAQGYSDVHDLFNFKTDGSVATLYS 532
Query: 330 QDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEP 389
+ Q K YQ + I ++D LL+ +
Sbjct: 533 GQTAAQSASTA----------SKADDAAVYYQATIAGISNVDQLLADQK----------- 571
Query: 390 IITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS 449
F +A+ + + LR++LT +S + AFNF ADG+
Sbjct: 572 --LNNFVRNAFGI-PSTVTDLALRDILTD----------QSGTGTYADVAAAFNFKADGT 618
Query: 450 IGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTL 509
+ Q+ + + I + + + Y+
Sbjct: 619 LEDGMPAQTDSQVTN-------------------------------IKIAATARTNDYSA 647
Query: 510 NINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRY 569
+ TI + ++L+A+ I NFL + + + + L I Y
Sbjct: 648 RMGTIANVDDLIADPAITNFLKSTYNL-PFNISDADLRSILTDSTAAAA--------AGY 698
Query: 570 KEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKR 629
++ + FNF G L + VQ T D Y + +E + +A +K
Sbjct: 699 ADLNADFNFAADGSLPA--VSSVQTAAQAQTTNDNYMARY---DDERDEAIAEVASNYKS 753
Query: 630 TIPNIRNHYEILGDSKLFKVVSK 652
+ + + + + + +
Sbjct: 754 MMADSTSLLDFSEITSVNDFLRT 776
>gi|218674655|ref|ZP_03524324.1| hypothetical protein RetlG_25976 [Rhizobium etli GR56]
Length = 469
Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats.
Identities = 127/449 (28%), Positives = 226/449 (50%), Gaps = 14/449 (3%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ ++V+ S S V+ V+ + YY+E I ++T+DEF+ D +L+SYA+K
Sbjct: 1 MVSAYVSYLAVARNLSASLSNVASQATVARDSAYYKENIDKVTTVDEFMGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ FS K QSD+Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLSDSSSFANSLSDGRYAEFAAAFKFSGETKTAQSDVQRD 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+++ Y++S + + + +E+ YF +NI I SVD RL +YVL +F ++ +Y S
Sbjct: 121 SLLDAYEESFETEADAIEDETDYFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTST 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FLKDVLT L + + + D+ + ++A+ F F DGS+ ++++ QI + S Y
Sbjct: 181 SFLKDVLTSDLDDADSFVNQLGDDVYVSLAKAFNFNEDGSVD--GDLMSEDQILLVTSAY 238
Query: 241 FNNTID---CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
+ + Y+ I +++S + D KL L+ + + E +D F+
Sbjct: 239 AVASATIASSETGEAYDTYFAAEIGNITSVDQLMSDDKLVSYLRTAYGLTDDE--SDTFI 296
Query: 298 TLMQENDPIVSQVK---YFFQINFHRDN--SSSTKIQQDSQIQKMLDLYKKNCQIL-HDD 351
+ ++ I + NF D + Q Q + +N Q+L +
Sbjct: 297 SAALKSADIADAIGLSDLHDAFNFDEDGALADGDTAQTSDQTAATTAAFDENYQVLIANT 356
Query: 352 KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
+ + +Y + + SID+ L + ++ + P + AL A++++ + R +
Sbjct: 357 DTEDAVDNYTTRIASVTSIDDFLVSNADDDDDDNDDLPE-MWEMALRAFDIDPDSVSRSE 415
Query: 412 LRNVLTSNPSDPDSYANKSKDDRLIKLNH 440
+R +L S+P+D SY N DDR +
Sbjct: 416 VRKILESDPTDAKSYVNSLDDDRFVAFRK 444
Score = 175 bits (442), Expect = 4e-41, Method: Composition-based stats.
Identities = 87/466 (18%), Positives = 172/466 (36%), Gaps = 71/466 (15%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
+ +S Y+++NI K+ +VD+ D +L Y ++++ + + F+K VL L
Sbjct: 23 ASQATVARDSAYYKENIDKVTTVDEFMGDYKLYSYAMKAYGLEDMTYAKAFMKKVLESDL 82
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIV 251
++ + D R+ A F+F + +D+Q + ++ Y + +
Sbjct: 83 SDSSSFANSLSDGRYAEFAAAFKFSGE-----TKTAQSDVQRDSLLDAYEESFETEADAI 137
Query: 252 SDQN-YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQ- 309
D+ Y++ I S++S DFL +L + + F L+ E T+ FL + +D +
Sbjct: 138 EDETDYFEENIASITSVDDFLSSSRLKNYVLTA-FGLSTEYTSTSFLKDVLTSDLDDADS 196
Query: 310 ----------VKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKM-QSLIK 358
V NF+ D S + + QI + Y + + ++
Sbjct: 197 FVNQLGDDVYVSLAKAFNFNEDGSVDGDLMSEDQILLVTSAYAVASATIASSETGEAYDT 256
Query: 359 DYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTS 418
+ +G I S+D L+S + + AY L + D + ++
Sbjct: 257 YFAAEIGNITSVDQLMSDDK-------------LVSYLRTAYGLTDDESDTFISAALKSA 303
Query: 419 NPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHD 478
+ +D L+ AFNF+ DG++ Q+ + + +
Sbjct: 304 DIADAIGL---------SDLHDAFNFDEDGALADGDTAQTSDQTAATTAAFDENYQVLI- 353
Query: 479 AENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLAN------------KRI 526
N + VD YT I ++ S ++ L + +
Sbjct: 354 -----------------ANTDTEDAVDNYTTRIASVTSIDDFLVSNADDDDDDNDDLPEM 396
Query: 527 LNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEI 572
L + ID V + +I +SD D KS+ N+ D+R+
Sbjct: 397 WEMALRAFDIDPDSVSRSEVRKILESDPTDAKSYVNSLDDDRFVAF 442
Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats.
Identities = 77/373 (20%), Positives = 137/373 (36%), Gaps = 46/373 (12%)
Query: 345 CQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNM 404
+ + Y+ + K+ ++D + +A+ AY L
Sbjct: 20 SNVASQATVARDSAYYKENIDKVTTVDEFMGD-------------YKLYSYAMKAYGLED 66
Query: 405 QDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRD 464
+ ++ VL S+ SD S+AN D R + AF F+ G QS +
Sbjct: 67 MTYAKAFMKKVLESDLSDSSSFANSLSDGRYAEFAAAFKFS-----GETKTAQSDVQRDS 121
Query: 465 NVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANK 524
+ Y + DA I E DY+ NI +I S ++ L++
Sbjct: 122 LLDAYEESFETEADA--------------------IEDETDYFEENIASITSVDDFLSSS 161
Query: 525 RILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGEL 584
R+ N++L + G+ ++ FL ++ SDL D SF N D+ Y + +FNF+ G +
Sbjct: 162 RLKNYVLTAFGLSTEYTSTSFLKDVLTSDLDDADSFVNQLGDDVYVSLAKAFNFNEDGSV 221
Query: 585 SHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDS 644
+ + Q I Y E A YF I NI + +++ D
Sbjct: 222 DGDLMSEDQ----ILLVTSAYAVASATIASSET--GEAYDTYFAAEIGNITSVDQLMSDD 275
Query: 645 KLFKVVSKKLKLSPYFAVLPERK--KIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSI 702
KL + L+ + K + I ++D D+ ++ A Q+
Sbjct: 276 KLVSYLRTAYGLTDDESDTFISAALKSADIADAIGLSDLHDAFNFDEDGALADGDTAQTS 335
Query: 703 DYKKALFSSPNQN 715
D A ++ ++N
Sbjct: 336 DQTAATTAAFDEN 348
Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats.
Identities = 81/422 (19%), Positives = 162/422 (38%), Gaps = 58/422 (13%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ + +S +N + D YYK I+ V++ +F+ D KL+ + + L
Sbjct: 11 VARNLSASLSNVASQATVARDSAYYKENIDKVTTVDEFMGDYKLYSY-AMKAYGLEDMTY 69
Query: 293 ADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
A F+ + E+D S F F + T Q D Q +LD Y++
Sbjct: 70 AKAFMKKVLESDLSDSSSFANSLSDGRYAEFAAAFKFSGETKT-AQSDVQRDSLLDAYEE 128
Query: 344 NCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLN 403
+ + D ++ ++ + I S+D+ LS + L A+ L+
Sbjct: 129 SFET-EADAIEDETDYFEENIASITSVDDFLSSSR-------------LKNYVLTAFGLS 174
Query: 404 MQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIR 463
+ L++VLTS+ D DS+ N+ DD + L AFNFN DGS+ M + ++ +
Sbjct: 175 TEYTSTSFLKDVLTSDLDDADSFVNQLGDDVYVSLAKAFNFNEDGSVDGDLMSEDQILLV 234
Query: 464 DNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLAN 523
+ YA +I +E Y+ I I S ++L+++
Sbjct: 235 TSA--YAVASATIASSETGEAYD------------------TYFAAEIGNITSVDQLMSD 274
Query: 524 KRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGE 583
+++++L + G+ + + +D+ D + ++ +FNFD G
Sbjct: 275 DKLVSYLRTAYGLTDDESDTFISAALKSADIADAIGLS---------DLHDAFNFDEDGA 325
Query: 584 LSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGD 643
L+ + D +Q++ + +D + I ++ + + L
Sbjct: 326 LADGDTAQTSDQTAATTAAFDENYQVLIANTDTEDAVD----NYTTRIASVTSIDDFLVS 381
Query: 644 SK 645
+
Sbjct: 382 NA 383
Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats.
Identities = 45/248 (18%), Positives = 94/248 (37%), Gaps = 27/248 (10%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S + + ++ + + + YY NI+ + + +E + + ++ ++ +++
Sbjct: 3 SAYVSYLAVARNLSASLSNVASQATVARDSAYYKENIDKVTTVDEFMGDYKLYSYAMKAY 62
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + F+ ++ +SDL D SFAN+ D RY E ++F F Q
Sbjct: 63 GLEDMTYAKAFMKKVLESDLSDSSSFANSLSDGRYAEFAAAFKFSGE-------TKTAQS 115
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
+ D D Y+ + + +D YF+ I +I + + L S+L V
Sbjct: 116 DVQRDSLLDAYEESFETEADAIEDETD----YFEENIASITSVDDFLSSSRLKNYVLTAF 171
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQ 714
LS + K +L + D ++ D +L + N
Sbjct: 172 GLSTEYTSTSFLK--DVLTSDLDDAD--------------SFVNQLGDDVYVSLAKAFNF 215
Query: 715 NKDPWNNS 722
N+D +
Sbjct: 216 NEDGSVDG 223
>gi|163761036|ref|ZP_02168114.1| hypothetical protein HPDFL43_03334 [Hoeflea phototrophica DFL-43]
gi|162281817|gb|EDQ32110.1| hypothetical protein HPDFL43_03334 [Hoeflea phototrophica DFL-43]
Length = 961
Score = 334 bits (855), Expect = 5e-89, Method: Composition-based stats.
Identities = 137/683 (20%), Positives = 261/683 (38%), Gaps = 65/683 (9%)
Query: 49 IKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP 108
+ D R AL A GL + KI D+ ++ + S +
Sbjct: 290 MIDFREEESALIADGLENSPEMTALRNKI---DVWTAD------TDARWT-ISTSLNEIV 339
Query: 109 PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL 168
+ ++ + E + + +D + +
Sbjct: 340 ELEASKTQEGADLAAIQSQIDALRVTITGAEANLTL-----TTSDIDDAVAAKDVAIAAY 394
Query: 169 QSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKIL 228
+ L L +A + Y + +++ A+A + F DG++
Sbjct: 395 T--DLPELGDDTNQLAAQLNTDVAAARNYINAT--DKYLALAYAYNFNDDGTVPAGG-FQ 449
Query: 229 TDMQIEKIVSNYFNNT--IDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFP 286
T+ ++E Y + + + + +Y++ I S ++ + ++D ++ L+ +
Sbjct: 450 TEAELEATTELYVTSQDRLTLTGAMLNDDYFRETIGSFTTAEEMMEDERIVSYLKSAFNL 509
Query: 287 ---------------LNPEITAD-----KFLTLMQENDPIVS-QVKYFFQINFHRDNSSS 325
+P AD +L + P V NF D +
Sbjct: 510 DTYLTVVTSTLENAITSPATDADLEDETNYLVAFHKGKPYFDDLVALSRAFNFEEDGTLP 569
Query: 326 TKIQQDSQIQK--MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGP 383
+Q + + Y + Q I+ Q+ +L+ +
Sbjct: 570 DGLQPVDAENQSVLSSRYFSGYDDADEAADQEAIRRMQI---------DLVGLNTEGATV 620
Query: 384 NSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFN 443
FA+ A L+ ++ + +R VLTS+ DP+SY KD+R +K + FN
Sbjct: 621 EDLFNSSAVYSFAMQAAELDPNEIPQRIMRKVLTSDLQDPNSYVYTLKDERYVKFANLFN 680
Query: 444 FNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSE 503
F+++G Q + + D + Y +K E + + +E
Sbjct: 681 FDSEGVATAPLTAQDQARMDDISRDYIVQKTRFLTGEEAA-----------TARSDAEAE 729
Query: 504 VDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANT 563
YY ++ I + ++LL N+R+++F L +KGID + V D L +F+SDL DP S+ANT
Sbjct: 730 ASYYQRTVSNIETLDQLLGNRRLIDFALTAKGIDPETVSNDELQLLFRSDLDDPDSYANT 789
Query: 564 YKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIAL 623
D R E+++SFNFD G+L + ++ + +T +LY Q IE + E+D + L
Sbjct: 790 VSDFRLTEVVTSFNFDEAGKLMQRDAAEISSRGDLYETMNLYLRQTIELERGEEDNGVRL 849
Query: 624 ALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKD 683
ALYF+R P I + Y+ILGD+ L++V L + + + +L+ + + D D
Sbjct: 850 ALYFERMAPTITSVYDILGDTALYEVFKTIFSLPDEISGMSVDSQAALLEDRMDMADLAD 909
Query: 684 SKKVEDFLYAAKAMDHQSIDYKK 706
+K++ + M
Sbjct: 910 PEKLKKLVERFTIMYDLENSSSS 932
Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats.
Identities = 146/721 (20%), Positives = 282/721 (39%), Gaps = 98/721 (13%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M +++ ++D++++ + VS+ VS E Y++E I + + +EF+ D RL+SYA+
Sbjct: 1 MTTTYLNYNLVAQDLKAE-MNRVSQQTQVSRETAYFKENIGKVRSAEEFVGDYRLYSYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
KA GL DM +AE F+ K+LESDLSD S N+L +Y+ FA ++ F KV S Q
Sbjct: 60 KAHGLEDMIYAEAFMLKVLESDLSDSDSYANRLTDSRYRDFAAAFQFEDGSKVPMSVNQI 119
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
I Y ++ ++ E Y+ + +VDQ D RL D++ QS+ I +
Sbjct: 120 DEAIGLYDETVASLDDKISGEVNYYNAMAGLVENVDQFLADPRLFDFITQSYGIDGSTVD 179
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIE----- 234
FL+ +L +P Y + R + +LS IL D+
Sbjct: 180 RTFLRGILASDPDDPNSYLNTNLIAN--------RTSSETTLSTAQPILNDIAARQSEVD 231
Query: 235 -KIVSNYFNNTIDCVPIVSDQNYYKLA-----INSVSSFSDFLKD---PKLFKMLQLSLF 285
K + I + D+ + + + S+ + D L D ++L++
Sbjct: 232 DKATMVAYGEGIVSIQAAIDEALVRQSEPGADVASIQTEIDVLTDGLHTTYRNFIELAMI 291
Query: 286 PLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQ---------DSQIQK 336
E +A + EN P ++ ++ + + D + I S+ Q+
Sbjct: 292 DFREEESA--LIADGLENSPEMTALRNKIDV-WTADTDARWTISTSLNEIVELEASKTQE 348
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKS-IDNLLSGKCQLEGPNSAEEPIITLQF 395
DL QI D ++ I + L S ID+ ++ K
Sbjct: 349 GADLAAIQSQI---DALRVTITGAEANLTLTTSDIDDAVAAK----------------DV 389
Query: 396 ALDAY-NLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIP 454
A+ AY +L D +QL L ++ + +Y N + D+ + L +A+NFN DG++ P
Sbjct: 390 AIAAYTDLPELGDDTNQLAAQLNTDVAAARNYINAT--DKYLALAYAYNFNDDGTV-PAG 446
Query: 455 MMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTI 514
Q+ + + Y + + + DY+ I +
Sbjct: 447 GFQTEAELEATTELYVTSQDRLTLTGAMLND-------------------DYFRETIGSF 487
Query: 515 HSFEELLANKRILNFLLESKGIDS-QKVREDFLCEIFKS-----DLKDPKSFANTYKDNR 568
+ EE++ ++RI+++L + +D+ V L S DL+D ++ + +
Sbjct: 488 TTAEEMMEDERIVSYLKSAFNLDTYLTVVTSTLENAITSPATDADLEDETNYLVAFHKGK 547
Query: 569 -----YKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIAL 623
+ +FNF+ G L + V + + + +++ +
Sbjct: 548 PYFDDLVALSRAFNFEEDGTL-PDGLQPVDAENQSVLSSRYFSGYDDADEAADQEAIRRM 606
Query: 624 ALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKD 683
+ ++ S ++ + A L + + + + + +D +D
Sbjct: 607 QIDLVGLNTEGATVEDLFNSSAVYSFAMQA-------AELDPNEIPQRIMRKVLTSDLQD 659
Query: 684 S 684
Sbjct: 660 P 660
Score = 150 bits (378), Expect = 8e-34, Method: Composition-based stats.
Identities = 65/292 (22%), Positives = 124/292 (42%), Gaps = 22/292 (7%)
Query: 44 TIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARS 103
T+++ ++S+A++A L ++ ++K+L SDL DP S V L +Y FA
Sbjct: 619 TVEDLFNSSAVYSFAMQAAELDPNEIPQRIMRKVLTSDLQDPNSYVYTLKDERYVKFANL 678
Query: 104 YDF-----SPPPKVIQSDIQHKTIIQDYK---------QSHQHKEEVALEESKYFRKNIH 149
++F + P Q + I +DY + A E+ Y+++ +
Sbjct: 679 FNFDSEGVATAPLTAQDQARMDDISRDYIVQKTRFLTGEEAATARSDAEAEASYYQRTVS 738
Query: 150 KINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAM 209
I ++DQL +RRL+D+ L + I P+ +S L+ + L +P Y D R +
Sbjct: 739 NIETLDQLLGNRRLIDFALTAKGIDPETVSNDELQLLFRSDLDDPDSYANTVSDFRLTEV 798
Query: 210 AENFRFQPDGSLSKRDKIL--TDMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAIN 262
+F F G L +RD + + + ++ Y TI+ D Y++
Sbjct: 799 VTSFNFDEAGKLMQRDAAEISSRGDLYETMNLYLRQTIELERGEEDNGVRLALYFERMAP 858
Query: 263 SVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFF 314
+++S D L D L+++ + +F L EI+ + + +
Sbjct: 859 TITSVYDILGDTALYEVFKT-IFSLPDEISGMSVDSQAALLEDRMDMADLAD 909
Score = 103 bits (256), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/222 (17%), Positives = 82/222 (36%), Gaps = 13/222 (5%)
Query: 20 STVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILE 79
+ E YY+ + +I T+D+ + ++RL +AL A G+ + + ++ +
Sbjct: 718 EAATARSDAEAEASYYQRTVSNIETLDQLLGNRRLIDFALTAKGIDPETVSNDELQLLFR 777
Query: 80 SDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH-----------KTIIQDYKQ 128
SDL DP S N ++ + S++F K++Q D ++ +
Sbjct: 778 SDLDDPDSYANTVSDFRLTEVVTSFNFDEAGKLMQRDAAEISSRGDLYETMNLYLRQTIE 837
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
+ +E+ + + YF + I SV + D L + FS+ + +
Sbjct: 838 LERGEEDNGVRLALYFERMAPTITSVYDILGDTALYEVFKTIFSLPDEISGMSVDSQ--A 895
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
L + + + + + E F D S +
Sbjct: 896 ALLEDRMDMADLADPEKLKKLVERFTIMYDLENSSSSPTAAE 937
>gi|163740770|ref|ZP_02148163.1| hypothetical protein RG210_13056 [Phaeobacter gallaeciensis 2.10]
gi|161385761|gb|EDQ10137.1| hypothetical protein RG210_13056 [Phaeobacter gallaeciensis 2.10]
Length = 591
Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats.
Identities = 122/632 (19%), Positives = 231/632 (36%), Gaps = 103/632 (16%)
Query: 127 KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+Q K + + F + I I S DQL D +L L +F + + F+K V
Sbjct: 25 QQQIFEKSPILDRAVQDFTQKIEGIQSSDQLLDDYNVLKVALGAFGLDEDINNRAFIKKV 84
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTID 246
L L+ P + DNR+ +A+ F F D L +EK +N
Sbjct: 85 LDSDLSEPTSFANRLNDNRYLGLAQTFGFGND-----AGPQLPSSSVEKPYAN------- 132
Query: 247 CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPI 306
V+S D L + L L F L + FL + E+D
Sbjct: 133 -----------------VASPEDLLSNQTLLNQ-ALDDFGLEKYAGNEFFLMRVLESD-- 172
Query: 307 VSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGK 366
D +S DS++ + ++ N + M++L+ ++
Sbjct: 173 ------------TTDPASFVNRLSDSKLADFANAFQFNQPPEYTSSMEALVGEFNA---- 216
Query: 367 IKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSY 426
++ + E L+ +D+++L + L+ +L SNP DPDS
Sbjct: 217 -------MNDGNGPANADELLENEGLLKAVVDSFDLEY--TNTIFLKRMLESNPYDPDSP 267
Query: 427 ANKSKDDRLIKLNHAFNF---NADGSIGPIPMMQSRLTIRDNVKHY-------------- 469
N+ +D R + ++ AF F + + P ++ + D ++ +
Sbjct: 268 VNQQEDPRYLAMSRAFGFGISDINSFTSPEELLAQPQLLEDALEQFNLSNPGEQYIRDVL 327
Query: 470 ----ANRKRSIHDAENKSFNSMEQISTQKRINLEINSEV--DYYTLNINTIHSFEELLAN 523
++ ++ N +F + + + +V D + ++ + +
Sbjct: 328 ESDLSDPNSFVNQPSNLAFYDFAEAFQNEWPSAPSRMQVLADEVGGKLAGYEQPQQFVFD 387
Query: 524 KRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGE 583
L+ I +++ D + + F+SDL S+AN ++D K + +F F+ G
Sbjct: 388 FDAFEAGLDVFNISERELDFDVMIKAFESDLSSEISYANLHRDPNLKAMAHAFAFNPGGS 447
Query: 584 LSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN------- 636
G Q + DLYK + E E DPN+ LAL +R + +I +
Sbjct: 448 DHTYPAGFAQ------EIADLYKDRNFEIAIGESDPNMRLALSLERELQSIADAGGSEDA 501
Query: 637 -HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAK 695
+ I+G L + L L F L +++ +K+ + F + + A
Sbjct: 502 HWFGIIGSPPLKSMFETALGLPASFGQLDVDRQVNEMKERAQ-TSFGTT-------HPAD 553
Query: 696 AMDHQSID-YKKALFSSPNQNKDPWNNSFDDP 726
++ +++D ++ N D N F DP
Sbjct: 554 LLEPETLDAFRNRFLLLSGLNSDQAANGFSDP 585
Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats.
Identities = 93/491 (18%), Positives = 179/491 (36%), Gaps = 70/491 (14%)
Query: 1 MIPSHVAPFPSKDIQS-KLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
++ + +A + D + K PI+ + + ++I+ I + D+ + D + AL
Sbjct: 7 VLGTGIAGWNFLDRTRVQQQQIFEKSPILDRAVQDFTQKIEGIQSSDQLLDDYNVLKVAL 66
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
AFGL + + FIKK+L+SDLS+P S N+LN +Y A+++ F
Sbjct: 67 GAFGLDEDINNRAFIKKVLDSDLSEPTSFANRLNDNRYLGLAQTFGFGNDAGPQLPSSS- 125
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
K + S + L ++ LL+ L F + +
Sbjct: 126 ------------------------VEKPYANVASPEDLLSNQTLLNQALDDFGLEKYAGN 161
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FL VL +P + D++ A F+F + + L E N
Sbjct: 162 EFFLMRVLESDTTDPASFVNRLSDSKLADFANAFQFNQPPEYTSSMEALVG---EFNAMN 218
Query: 240 YFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFK-MLQLSLFPLNPEITADKFLT 298
N + ++ ++ K ++ SF + K ML+ + + +
Sbjct: 219 DGNGPANADELLENEGLLKAVVD---SFDLEYTNTIFLKRMLESNPYDPDS--------P 267
Query: 299 LMQENDPIVSQVKYFFQINFHRDNSSSTK---IQQDSQIQKMLDLYKKNC---------- 345
+ Q+ DP + F NS ++ + Q ++ L+ + +
Sbjct: 268 VNQQEDPRYLAMSRAFGFGISDINSFTSPEELLAQPQLLEDALEQFNLSNPGEQYIRDVL 327
Query: 346 ---------------QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGK-CQLEGPNSAEEP 389
+ D ++ ++ +++ + + + GK E P
Sbjct: 328 ESDLSDPNSFVNQPSNLAFYDFAEAFQNEWPSAPSRMQVLADEVGGKLAGYEQPQQFVFD 387
Query: 390 IITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS 449
+ LD +N++ ++LD D + S+ S SYAN +D L + HAF FN GS
Sbjct: 388 FDAFEAGLDVFNISERELDFDVMIKAFESDLSSEISYANLHRDPNLKAMAHAFAFNPGGS 447
Query: 450 IGPIPMMQSRL 460
P ++
Sbjct: 448 DHTYPAGFAQE 458
Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 13/176 (7%)
Query: 38 RIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKY 97
++ +F+ D F L F +S+ + K ESDLS S N
Sbjct: 374 KLAGYEQPQQFVFDFDAFEAGLDVFNISERELDFDVMIKAFESDLSSEISYANLHRDPNL 433
Query: 98 QYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQ-----HKEEVALEESKYFRKNIHKIN 152
+ A ++ F+P I D + + + + + + + I
Sbjct: 434 KAMAHAFAFNPGGSDHTYPAGFAQEIADLYKDRNFEIAIGESDPNMRLALSLERELQSIA 493
Query: 153 --------SVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIE 200
+ L + + + L + V + +
Sbjct: 494 DAGGSEDAHWFGIIGSPPLKSMFETALGLPASFGQLDVDRQVNEMKERAQTSFGTT 549
>gi|163737657|ref|ZP_02145074.1| hypothetical protein RGBS107_19038 [Phaeobacter gallaeciensis
BS107]
gi|161389183|gb|EDQ13535.1| hypothetical protein RGBS107_19038 [Phaeobacter gallaeciensis
BS107]
Length = 591
Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats.
Identities = 122/632 (19%), Positives = 231/632 (36%), Gaps = 103/632 (16%)
Query: 127 KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+Q K + + F + I I S DQL D +L L +F + + F+K V
Sbjct: 25 QQQIFEKSPILDRAVQDFTQKIEGIQSSDQLLDDYNVLKVALGAFGLDEDINNRAFIKKV 84
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTID 246
L L+ P + DNR+ +A+ F F D L +EK +N
Sbjct: 85 LDSDLSEPTSFANRLNDNRYLGLAQTFGFGND-----AGPQLPSSSVEKPYAN------- 132
Query: 247 CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPI 306
V+S D L + L L F L + FL + E+D
Sbjct: 133 -----------------VASPEDLLSNQTLLNQ-ALDDFGLKKYAGNEFFLMRVLESD-- 172
Query: 307 VSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGK 366
D +S DS++ + ++ N + M++L+ ++
Sbjct: 173 ------------TTDPASFVNRLSDSKLADFANAFQFNQPPEYTSSMEALVGEFNA---- 216
Query: 367 IKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSY 426
++ + E L+ +D+++L + L+ +L SNP DPDS
Sbjct: 217 -------MNDGNGPANADELLENEDLLKAVVDSFDLEY--TNTIFLKRMLESNPYDPDSP 267
Query: 427 ANKSKDDRLIKLNHAFNF---NADGSIGPIPMMQSRLTIRDNVKHY-------------- 469
N+ +D R + ++ AF F + + P ++ + D ++ +
Sbjct: 268 VNQQEDPRYLAMSRAFGFGISDINSFTSPEELLAQPQLLEDALEQFNLSNPGEQYIRDVL 327
Query: 470 ----ANRKRSIHDAENKSFNSMEQISTQKRINLEINSEV--DYYTLNINTIHSFEELLAN 523
++ ++ N +F + + + +V D + ++ + +
Sbjct: 328 ESDLSDPNSFVNQPSNLAFYDFAEAFQNEWPSAPSRMQVLADEVGGKLAGYEQPQQFVFD 387
Query: 524 KRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGE 583
L+ I +++ D + + F+SDL S+AN ++D K + +F F+ G
Sbjct: 388 FDAFEAGLDVFNISERELDFDVMIKAFESDLSSEISYANLHRDPNLKAMAHAFAFNPGGS 447
Query: 584 LSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN------- 636
G Q + DLYK + E E DPN+ LAL +R + +I +
Sbjct: 448 DHTYPAGFAQ------EIADLYKDRNFEIAIGESDPNMRLALSLERELQSIADAGGSEDA 501
Query: 637 -HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAK 695
+ I+G L + L L F L +++ +K+ + F + + A
Sbjct: 502 HWFGIIGSPPLKSMFETALGLPASFGQLDVDRQVNEMKERAQ-TSFGTT-------HPAD 553
Query: 696 AMDHQSID-YKKALFSSPNQNKDPWNNSFDDP 726
++ +++D ++ N D N F DP
Sbjct: 554 LLEPETLDAFRNRFLLLSGLNSDQAANGFSDP 585
Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats.
Identities = 93/491 (18%), Positives = 180/491 (36%), Gaps = 70/491 (14%)
Query: 1 MIPSHVAPFPSKDIQS-KLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
++ + +A + D + K PI+ + + ++I+ I + D+ + D + AL
Sbjct: 7 VLGTGIAGWNFLDRTRVQQQQIFEKSPILDRAVQDFTQKIEGIQSSDQLLDDYNVLKVAL 66
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
AFGL + + FIKK+L+SDLS+P S N+LN +Y A+++ F
Sbjct: 67 GAFGLDEDINNRAFIKKVLDSDLSEPTSFANRLNDNRYLGLAQTFGFGNDAGPQLPSSS- 125
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
K + S + L ++ LL+ L F + +
Sbjct: 126 ------------------------VEKPYANVASPEDLLSNQTLLNQALDDFGLKKYAGN 161
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FL VL +P + D++ A F+F + + L E N
Sbjct: 162 EFFLMRVLESDTTDPASFVNRLSDSKLADFANAFQFNQPPEYTSSMEALVG---EFNAMN 218
Query: 240 YFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFK-MLQLSLFPLNPEITADKFLT 298
N + ++ +++ K ++ SF + K ML+ + + +
Sbjct: 219 DGNGPANADELLENEDLLKAVVD---SFDLEYTNTIFLKRMLESNPYDPDS--------P 267
Query: 299 LMQENDPIVSQVKYFFQINFHRDNSSSTK---IQQDSQIQKMLDLYKKNC---------- 345
+ Q+ DP + F NS ++ + Q ++ L+ + +
Sbjct: 268 VNQQEDPRYLAMSRAFGFGISDINSFTSPEELLAQPQLLEDALEQFNLSNPGEQYIRDVL 327
Query: 346 ---------------QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGK-CQLEGPNSAEEP 389
+ D ++ ++ +++ + + + GK E P
Sbjct: 328 ESDLSDPNSFVNQPSNLAFYDFAEAFQNEWPSAPSRMQVLADEVGGKLAGYEQPQQFVFD 387
Query: 390 IITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS 449
+ LD +N++ ++LD D + S+ S SYAN +D L + HAF FN GS
Sbjct: 388 FDAFEAGLDVFNISERELDFDVMIKAFESDLSSEISYANLHRDPNLKAMAHAFAFNPGGS 447
Query: 450 IGPIPMMQSRL 460
P ++
Sbjct: 448 DHTYPAGFAQE 458
Score = 89.9 bits (221), Expect = 1e-15, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 92/255 (36%), Gaps = 21/255 (8%)
Query: 495 RINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDL 554
+ ++ V +T I I S ++LL + +L L + G+D F+ ++ SDL
Sbjct: 30 EKSPILDRAVQDFTQKIEGIQSSDQLLDDYNVLKVALGAFGLDEDINNRAFIKKVLDSDL 89
Query: 555 KDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKE 614
+P SFAN DNRY + +F F + ++ DL +Q + +
Sbjct: 90 SEPTSFANRLNDNRYLGLAQTFGFGNDAGPQLPSSSVEKPYANVASPEDLLSNQTLLNQA 149
Query: 615 EEKDPNIALALY-------FKRTIPNIRNHYEILGDSKLFKVVSK-KLKLSPYFAVLPER 666
+ A + + + L DSKL + + P +
Sbjct: 150 LDDFGLKKYAGNEFFLMRVLESDTTDPASFVNRLSDSKLADFANAFQFNQPPEYTSS--- 206
Query: 667 KKIRILKKHIKINDFKDSKKVEDFLYAAKAM----DHQSIDYKKALFSSPNQNKDPWNNS 722
++ + +ND ++ L + D ++Y +F +P+
Sbjct: 207 -MEALVGEFNAMNDGNGPANADELLENEDLLKAVVDSFDLEYTNTIFLKRMLESNPY--- 262
Query: 723 FDDPQNNVSLQLSPQ 737
DP + V+ Q P+
Sbjct: 263 --DPDSPVNQQEDPR 275
Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 13/176 (7%)
Query: 38 RIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKY 97
++ +F+ D F L F +S+ + K ESDLS S N
Sbjct: 374 KLAGYEQPQQFVFDFDAFEAGLDVFNISERELDFDVMIKAFESDLSSEISYANLHRDPNL 433
Query: 98 QYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQ-----HKEEVALEESKYFRKNIHKIN 152
+ A ++ F+P I D + + + + + + + I
Sbjct: 434 KAMAHAFAFNPGGSDHTYPAGFAQEIADLYKDRNFEIAIGESDPNMRLALSLERELQSIA 493
Query: 153 --------SVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIE 200
+ L + + + L + V + +
Sbjct: 494 DAGGSEDAHWFGIIGSPPLKSMFETALGLPASFGQLDVDRQVNEMKERAQTSFGTT 549
>gi|260466626|ref|ZP_05812814.1| protein of unknown function DUF1217 [Mesorhizobium opportunistum
WSM2075]
gi|259029632|gb|EEW30920.1| protein of unknown function DUF1217 [Mesorhizobium opportunistum
WSM2075]
Length = 373
Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats.
Identities = 95/378 (25%), Positives = 162/378 (42%), Gaps = 38/378 (10%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
I + + Y + K+KSID+ + ++A+ AY L D
Sbjct: 22 IEKQPTVDRDTQYYLANITKVKSIDDFVKNDR-------------LFKYAMKAYGLEDMD 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ + L +DPDS+ANK D R + AFNF A+G+ I +L +
Sbjct: 69 YAKAFMVKALKEGVTDPDSFANKLTDKRYAQFVSAFNFAANGADATIYNKAQQLVM---- 124
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
K+YA + + N + + E YY NI + S ++L++N R+
Sbjct: 125 KNYATQAQIAGLDPNSDY---------------VKGETTYYLANITKVKSVDDLMSNSRL 169
Query: 527 LNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSH 586
+ L + G+DS +D + ++ +S + DP S AN + Y + +FNF+ +GE +
Sbjct: 170 YTYALAAYGLDSATEDKDLIKQVLQSKVSDPDSVANKQTNPAYAGLALAFNFEANGENAT 229
Query: 587 KKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKL 646
Q T D Y Q +E+ + + + LALYF+R P+I + Y++L D+ L
Sbjct: 230 TISPAQQP------TVDKYLRQTLEEDAGQTNQGVRLALYFQRKAPDITSWYDVLADTAL 283
Query: 647 FKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKK 706
VV L L FA K+ ++ ++ + + DF D K+ FL +M +
Sbjct: 284 ASVVRTALGLPDSFATANIDKQAQLFEQKLDLTDFTDPAKLTKFLTRFTSMYEINNPTST 343
Query: 707 ALFSSPNQNKDPWNNSFD 724
A+ S P +
Sbjct: 344 AVSSISVLFAKPVTSGIS 361
Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats.
Identities = 74/306 (24%), Positives = 142/306 (46%), Gaps = 17/306 (5%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ + + ++DI SK + K P V + +YY I + +ID+F+K+ RLF YA+
Sbjct: 1 MLNTFTSYQLITRDI-SKSIDRIEKQPTVDRDTQYYLANITKVKSIDDFVKNDRLFKYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQ 118
KA+GL DM +A+ F+ K L+ ++DP S N+L +Y F +++F+ +
Sbjct: 60 KAYGLEDMDYAKAFMVKALKEGVTDPDSFANKLTDKRYAQFVSAFNFAANGADATIYNKA 119
Query: 119 HKTIIQDYKQSHQ-----HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSI 173
+ ++++Y Q + E+ Y+ NI K+ SVD L + RL Y L ++ +
Sbjct: 120 QQLVMKNYATQAQIAGLDPNSDYVKGETTYYLANITKVKSVDDLMSNSRLYTYALAAYGL 179
Query: 174 TPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQI 233
+K VL +++P + + + +A F F+ +G +
Sbjct: 180 DSATEDKDLIKQVLQSKVSDPDSVANKQTNPAYAGLALAFNFEANGENATTIS----PAQ 235
Query: 234 EKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLN 288
+ V Y T++ ++Q Y++ ++S+ D L D L +++ +L +
Sbjct: 236 QPTVDKYLRQTLEEDAGQTNQGVRLALYFQRKAPDITSWYDVLADTALASVVRTALGLPD 295
Query: 289 PEITAD 294
TA+
Sbjct: 296 SFATAN 301
Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 23/233 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ + + ++ + YY NI + S ++ + N R+ + +++ G++ + F
Sbjct: 14 DISKSIDRIEKQPTVDRDTQYYLANITKVKSIDDFVKNDRLFKYAMKAYGLEDMDYAKAF 73
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ + K + DP SFAN D RY + +S+FNF +G + Q Y
Sbjct: 74 MVKALKEGVTDPDSFANKLTDKRYAQFVSAFNFAANGADATIYNKAQQL------VMKNY 127
Query: 606 KHQ-MIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Q I + D Y+ I +++ +++ +S+L+ L
Sbjct: 128 ATQAQIAGLDPNSDYVKGETTYYLANITKVKSVDDLMSNSRLYTYALAAYGLDSATEDKD 187
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKD 717
K++ + D V + Q+ L + N +
Sbjct: 188 LIKQVLQ-------SKVSDPDSVA---------NKQTNPAYAGLALAFNFEAN 224
Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats.
Identities = 66/349 (18%), Positives = 120/349 (34%), Gaps = 54/349 (15%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
I + +S + + D YY I V S DF+K+ +LFK + + L
Sbjct: 11 ITRDISKSIDRIEKQPTVDRDTQYYLANITKVKSIDDFVKNDRLFKY-AMKAYGLEDMDY 69
Query: 293 ADKFLTLMQEND-----------PIVSQVKYFFQINFHRDNSSSTKIQQDSQI--QKMLD 339
A F+ + ++ NF + + +T + Q+ +
Sbjct: 70 AKAFMVKALKEGVTDPDSFANKLTDKRYAQFVSAFNFAANGADATIYNKAQQLVMKNYAT 129
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
+ + D ++ Y + K+KS+D+L+S +AL A
Sbjct: 130 QAQIAGLDPNSDYVKGETTYYLANITKVKSVDDLMSNSR-------------LYTYALAA 176
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSR 459
Y L+ D+D ++ VL S SDPDS ANK + L AFNF A+G +
Sbjct: 177 YGLDSATEDKDLIKQVLQSKVSDPDSVANKQTNPAYAGLALAFNFEANGENATTISPAQQ 236
Query: 460 LTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEE 519
T+ ++ + Y+ I S+ +
Sbjct: 237 PTVDKYLRQTLEE--------------------DAGQTNQGVRLALYFQRKAPDITSWYD 276
Query: 520 LLANKRILNFLLESKGIDS-------QKVREDFLCEIFKSDLKDPKSFA 561
+LA+ + + + + G+ K + F ++ +D DP
Sbjct: 277 VLADTALASVVRTALGLPDSFATANIDKQAQLFEQKLDLTDFTDPAKLT 325
>gi|255601155|ref|XP_002537616.1| conserved hypothetical protein [Ricinus communis]
gi|223515719|gb|EEF24767.1| conserved hypothetical protein [Ricinus communis]
Length = 386
Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats.
Identities = 98/362 (27%), Positives = 169/362 (46%), Gaps = 12/362 (3%)
Query: 342 KKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYN 401
N Q + +Y+ + +K+I + + + P Q AL AY
Sbjct: 1 MNNYQSSQSTLTTDAVNNYKNRIASVKTIKDFFASNTSDSSAANDSAPE-LYQMALRAYG 59
Query: 402 LNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLT 461
+ ++ + +L +L S+P DP SY N KD R L AFNF++ G++ S+
Sbjct: 60 IGENEVTKSRLTKILESDPYDPKSYVNSLKDSRFTALAKAFNFDSKGNLKAPVQSLSQTQ 119
Query: 462 IRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELL 521
I + Y++R + + + + + Y+ NI + S +LL
Sbjct: 120 INSYISEYSSRTTAGLSGAELT-----------KATSDAKTAGTYFATNIVKVTSVTDLL 168
Query: 522 ANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIH 581
A+ ++ NF+L + ID + V L + F SD D KSF NT ++K I+ +FNF
Sbjct: 169 ADSKLTNFILTANSIDPKTVDTATLKKAFASDPSDSKSFINTTDGAKFKSIVEAFNFGTD 228
Query: 582 GELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEIL 641
G L+ K+G Q+ + T DL+ HQ +E ++ E +P + LALYF+R +I + Y+I+
Sbjct: 229 GNLTDSKLGTAQNQGALAATNDLFLHQTLEDQQGETNPGVRLALYFQRKASDINSIYDIM 288
Query: 642 GDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQS 701
GDS L++V++ L + + + +L K + ++D +D KV L AM
Sbjct: 289 GDSALYEVITTTYNLPSSISNMDVDTQASMLSKFVNVSDLQDPDKVNQLLQRFSAMYDME 348
Query: 702 ID 703
+
Sbjct: 349 NN 350
Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats.
Identities = 67/366 (18%), Positives = 138/366 (37%), Gaps = 50/366 (13%)
Query: 23 SKDPIVSCEERYYRERIKHISTIDEFIKDK------------RLFSYALKAFGLSDMSHA 70
S+ + + Y+ RI + TI +F L+ AL+A+G+ +
Sbjct: 7 SQSTLTTDAVNNYKNRIASVKTIKDFFASNTSDSSAANDSAPELYQMALRAYGIGENEVT 66
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQ--------------SD 116
+ + KILESD DPKS VN L ++ A++++F + S+
Sbjct: 67 KSRLTKILESDPYDPKSYVNSLKDSRFTALAKAFNFDSKGNLKAPVQSLSQTQINSYISE 126
Query: 117 IQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
+T A YF NI K+ SV L D +L +++L + SI PK
Sbjct: 127 YSSRTTAGLSGAELTKATSDAKTAGTYFATNIVKVTSVTDLLADSKLTNFILTANSIDPK 186
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKR--DKILTDMQIE 234
+ LK ++ K + + +F+++ E F F DG+L+ +
Sbjct: 187 TVDTATLKKAFASDPSDSKSFINTTDGAKFKSIVEAFNFGTDGNLTDSKLGTAQNQGALA 246
Query: 235 KIVSNYFNNTIDCVPIVSD-----QNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNP 289
+ + T++ ++ Y++ + ++S D + D L++++ + +
Sbjct: 247 ATNDLFLHQTLEDQQGETNPGVRLALYFQRKASDINSIYDIMGDSALYEVITTTYNLPSS 306
Query: 290 EITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILH 349
D D S + F + + +Q ++ ++L + + +
Sbjct: 307 ISNMDV--------DTQASMLSKFVNV---------SDLQDPDKVNQLLQRFSAMYDMEN 349
Query: 350 DDKMQS 355
+ +
Sbjct: 350 NTTSST 355
Score = 79.9 bits (195), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/376 (15%), Positives = 117/376 (31%), Gaps = 60/376 (15%)
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNP 289
Q N + + ++++ + S+ +D P+L++M L + +
Sbjct: 6 SSQSTLTTDAVNNYKNRIASVKTIKDFFASNTSDSSAAND--SAPELYQM-ALRAYGIGE 62
Query: 290 EITADKFLTLMQENDPI-----------VSQVKYFFQINFHRDNSSSTKIQQDSQIQ--- 335
LT + E+DP NF + +Q SQ Q
Sbjct: 63 NEVTKSRLTKILESDPYDPKSYVNSLKDSRFTALAKAFNFDSKGNLKAPVQSLSQTQINS 122
Query: 336 -------KMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEE 388
+ ++ + + K+ S+ +LL+
Sbjct: 123 YISEYSSRTTAGLSGAELTKATSDAKTAGTYFATNIVKVTSVTDLLADSK---------- 172
Query: 389 PIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADG 448
F L A +++ + +D L+ S+PSD S+ N + + + AFNF DG
Sbjct: 173 ---LTNFILTANSIDPKTVDTATLKKAFASDPSDSKSFINTTDGAKFKSIVEAFNFGTDG 229
Query: 449 SIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYT 508
++ + K + + A N F Q N + Y+
Sbjct: 230 NL-------------TDSKLGTAQNQGALAATNDLFLHQTLEDQQGETNPGV-RLALYFQ 275
Query: 509 LNINTIHSFEELLANKRILNFLLESKGI-------DSQKVREDFLCEIFKSDLKDPKSFA 561
+ I+S +++ + + + + + D + SDL+DP
Sbjct: 276 RKASDINSIYDIMGDSALYEVITTTYNLPSSISNMDVDTQASMLSKFVNVSDLQDPDK-V 334
Query: 562 NTYKDNRYKEIISSFN 577
N R+ + N
Sbjct: 335 NQLL-QRFSAMYDMEN 349
>gi|218459363|ref|ZP_03499454.1| hypothetical protein RetlK5_07677 [Rhizobium etli Kim 5]
Length = 332
Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 163/339 (48%), Gaps = 14/339 (4%)
Query: 376 GKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRL 435
+ S + AL A+ L QD+ R +R +LTS+ DPD Y KD+R+
Sbjct: 1 TNAAADFKKSNDNLPDPYHVALQAFGLTDQDVPRSMMRKILTSDAYDPDGYIASLKDERI 60
Query: 436 IKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKR 495
L AFNF DG T+ Y + A + +
Sbjct: 61 TNLARAFNFGPDGKAASPFQALPDATLAKYATDYKAHMTMLLKAGP----------VKDK 110
Query: 496 INLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLK 555
+ + +EVDY+ + + S ++ L + R+ + +L++ +D + + L +IF SD
Sbjct: 111 ASKDATAEVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPD 170
Query: 556 DPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEE 615
D KS+ N+ D R+++I+++FNFD G L+ KIG +Q+ ++T +LY Q +E ++
Sbjct: 171 DKKSYLNSKADARFQDIVAAFNFDKDGNLTRAKIGTIQNKAAEENTQELYVRQTLEAQQG 230
Query: 616 EKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKH 675
E + + LALYF R P+I + Y ILGD L++V++ L + + K+ ++ +
Sbjct: 231 ETNDGVRLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVTKQADLINRF 290
Query: 676 IKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQ 714
+K+ D +D KKV+ L AM D + + SP
Sbjct: 291 VKLEDLQDPKKVDKLLRRFTAM----YDVQNSAQQSPAL 325
Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats.
Identities = 65/261 (24%), Positives = 106/261 (40%), Gaps = 23/261 (8%)
Query: 55 FSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQ 114
+ AL+AFGL+D ++KIL SD DP + L + AR+++F P K
Sbjct: 18 YHVALQAFGLTDQDVPRSMMRKILTSDAYDPDGYIASLKDERITNLARAFNFGPDGKAAS 77
Query: 115 S-----DIQHKTIIQDYK----------QSHQHKEEVALEESKYFRKNIHKINSVDQLFK 159
D DYK + A E YF K + K+ S+D
Sbjct: 78 PFQALPDATLAKYATDYKAHMTMLLKAGPVKDKASKDATAEVDYFAKGMAKVKSLDDFLD 137
Query: 160 DRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDG 219
D RL D VL++ ++ PK LK + T + K Y D RF+ + F F DG
Sbjct: 138 DSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLNSKADARFQDIVAAFNFDKDG 197
Query: 220 SLSKR--DKILTDMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLK 272
+L++ I E Y T++ ++ Y+ S++S L
Sbjct: 198 NLTRAKIGTIQNKAAEENTQELYVRQTLEAQQGETNDGVRLALYFSRKAPSITSIYSILG 257
Query: 273 DPKLFKMLQLSLFPLNPEITA 293
D L++++ + + L +I++
Sbjct: 258 DKALYQVITTA-YSLPAQISS 277
Score = 108 bits (268), Expect = 5e-21, Method: Composition-based stats.
Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 23/217 (10%)
Query: 31 EERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVN 90
E Y+ + + + ++D+F+ D RL LKA L + + +KKI SD D KS +N
Sbjct: 118 EVDYFAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLN 177
Query: 91 QLNSLKYQYFARSYDFSPPPKVIQS-----------DIQHKTIIQDYKQSHQHKEEVALE 139
++Q +++F + ++ + + ++ ++ Q + +
Sbjct: 178 SKADARFQDIVAAFNFDKDGNLTRAKIGTIQNKAAEENTQELYVRQTLEAQQGETNDGVR 237
Query: 140 ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKD-------VLTLGLA 192
+ YF + I S+ + D+ L + ++S+ + S+ K V L
Sbjct: 238 LALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVTKQADLINRFVKLEDLQ 297
Query: 193 NPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILT 229
+PKK D R + Q S +ILT
Sbjct: 298 DPKKV-----DKLLRRFTAMYDVQNSAQQSPALQILT 329
Score = 89.9 bits (221), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/253 (17%), Positives = 92/253 (36%), Gaps = 23/253 (9%)
Query: 313 FFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDN 372
NF D +++ Q + L Y + + +++ + +D
Sbjct: 64 ARAFNFGPDGKAASPFQ--ALPDATLAKYATDYKAHMTMLLKAGPVKDKASKDATAEVDY 121
Query: 373 LLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKD 432
G +++ + + L A NL+ +D D+ L+ + TS+P D SY N D
Sbjct: 122 FAKGMAKVKSLDDFLDDSRLTDLVLKANNLDPKDYDKATLKKIFTSDPDDKKSYLNSKAD 181
Query: 433 DRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQIST 492
R + AFNF+ DG++ K + ++ + + + +
Sbjct: 182 ARFQDIVAAFNFDKDGNL-------------TRAKIGTIQNKAAEENTQELYVRQTLEAQ 228
Query: 493 QKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCE---- 548
Q N + Y++ +I S +L +K + + + + +Q D +
Sbjct: 229 QGETNDGV-RLALYFSRKAPSITSIYSILGDKALYQVITTAYSLPAQISSMDVTKQADLI 287
Query: 549 ---IFKSDLKDPK 558
+ DL+DPK
Sbjct: 288 NRFVKLEDLQDPK 300
>gi|254477619|ref|ZP_05091005.1| flagellar protein, putative [Ruegeria sp. R11]
gi|214031862|gb|EEB72697.1| flagellar protein, putative [Ruegeria sp. R11]
Length = 590
Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats.
Identities = 106/642 (16%), Positives = 222/642 (34%), Gaps = 115/642 (17%)
Query: 123 IQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPF 182
+ +Q K + + F I I + DQL D +L L +F + + F
Sbjct: 21 TRTQQQQIFEKSPILDRAVQDFTNKIDSIQTADQLLDDYNVLQVALGAFGLEEDIANRAF 80
Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFN 242
+K VL L++P+ + DNR+ +A+ F F
Sbjct: 81 IKQVLESDLSDPRSFANRLNDNRYLGLAQTFGFGS------------------------E 116
Query: 243 NTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
+ +++ Y +V+S D L + L L F L + FL + E
Sbjct: 117 DGPQLPSASAEKPYV-----NVASPEDLLSNKTLLNQ-ALDDFGLQRYAGNEFFLQKVLE 170
Query: 303 NDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL 362
+D D++S D+++ +K N + M +++ ++
Sbjct: 171 SDLS--------------DDNSFVNRLSDTRLADFASQFKFNAPPEYTSSMDAMLGEFTA 216
Query: 363 PLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSD 422
++ + L ++ ++L + L+ +L ++P D
Sbjct: 217 -----------MNDGAGPANADELLGNETLLNAVIETFDLEY--TNPIFLKRMLEADPYD 263
Query: 423 PDSYANKSKDDRLIKLNHAFNF---NADGSIGPIPMMQSRLTIRDNVKHY---------- 469
+S + +D R++ ++ AF F + + P + + + + +
Sbjct: 264 ENSAVRQQEDPRVLAMSRAFGFGMPDINSFSSPDELFARPELLEEVLDQFNNSNPGEDFL 323
Query: 470 --------ANRKRSIHDAENKSFNSMEQISTQKRINL--EINSEVDYYTLNINTIHSFEE 519
++ ++ N +F + + + ++ D ++ + +
Sbjct: 324 RQVLESDLSDPNSFVNQPGNLAFFDLAEAYQTEWTPPPSKVKVLADEVGTKLSGYENPRQ 383
Query: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
+ + L+ ++ +++ F+ ++F+SDL S+AN Y+D + + ++F F+
Sbjct: 384 FVFDFDAFEAGLDVFNMNERQLDFSFMLKVFESDLSSETSYANLYRDPNVQAMANAFAFN 443
Query: 580 IHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN--- 636
G G ++ DLY + E E DPN+ LAL +R + +I +
Sbjct: 444 PGGNDRTYPPG------FAEEIADLYTDRNFEIAIGESDPNMRLALALERELQSIADAGG 497
Query: 637 -----HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIN-------DFKDS 684
Y I+G L V L L F L +++ +K + D
Sbjct: 498 SEDAHWYGIIGSPPLKTVFESALGLPSSFGQLDVDRQVNEMKDRAFASFGTTHPADLLKP 557
Query: 685 KKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDDP 726
K+E+F + N D + F DP
Sbjct: 558 DKLEEF--------------RNRFLLLSELNSDTASAGFSDP 585
Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats.
Identities = 99/485 (20%), Positives = 180/485 (37%), Gaps = 70/485 (14%)
Query: 1 MIPSHVAPFPSKD-IQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
++ + +A + D +++ K PI+ + + +I I T D+ + D + AL
Sbjct: 7 VLGTGIAGWNFLDRTRTQQQQIFEKSPILDRAVQDFTNKIDSIQTADQLLDDYNVLQVAL 66
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
AFGL + FIK++LESDLSDP+S N+LN +Y A+++ F
Sbjct: 67 GAFGLEEDIANRAFIKQVLESDLSDPRSFANRLNDNRYLGLAQTFGFGS----------- 115
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
+D Q E K + S + L ++ LL+ L F + +
Sbjct: 116 ----EDGPQLPSASAE----------KPYVNVASPEDLLSNKTLLNQALDDFGLQRYAGN 161
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
FL+ VL L++ + D R A F+F + + E N
Sbjct: 162 EFFLQKVLESDLSDDNSFVNRLSDTRLADFASQFKFNAPPEYTSSMDAM---LGEFTAMN 218
Query: 240 YFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFK-MLQLSLFPLNPEITADKFLT 298
+ ++ ++ + +F +P K ML+ + D+
Sbjct: 219 DGAGPANADELLGNETLLNAV---IETFDLEYTNPIFLKRMLEADPY--------DENSA 267
Query: 299 LMQENDPIVSQVKYFFQINFHRDNSSSTK---IQQDSQIQKMLDLYKKNC---------- 345
+ Q+ DP V + F NS S+ + ++++LD + +
Sbjct: 268 VRQQEDPRVLAMSRAFGFGMPDINSFSSPDELFARPELLEEVLDQFNNSNPGEDFLRQVL 327
Query: 346 ---------------QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGK-CQLEGPNSAEEP 389
+ D ++ ++ P K+K + + + K E P
Sbjct: 328 ESDLSDPNSFVNQPGNLAFFDLAEAYQTEWTPPPSKVKVLADEVGTKLSGYENPRQFVFD 387
Query: 390 IITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS 449
+ LD +N+N + LD + V S+ S SYAN +D + + +AF FN G+
Sbjct: 388 FDAFEAGLDVFNMNERQLDFSFMLKVFESDLSSETSYANLYRDPNVQAMANAFAFNPGGN 447
Query: 450 IGPIP 454
P
Sbjct: 448 DRTYP 452
Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/212 (12%), Positives = 57/212 (26%), Gaps = 18/212 (8%)
Query: 38 RIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKY 97
++ +F+ D F L F +++ F+ K+ ESDLS S N
Sbjct: 374 KLSGYENPRQFVFDFDAFEAGLDVFNMNERQLDFSFMLKVFESDLSSETSYANLYRDPNV 433
Query: 98 QYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQ-----HKEEVALEESKYFRKNIHKIN 152
Q A ++ F+P I D + + + + + + I
Sbjct: 434 QAMANAFAFNPGGNDRTYPPGFAEEIADLYTDRNFEIAIGESDPNMRLALALERELQSIA 493
Query: 153 --------SVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIE---- 200
+ L + + + L + V + +
Sbjct: 494 DAGGSEDAHWYGIIGSPPLKTVFESALGLPSSFGQLDVDRQVNEMKDRAFASFGTTHPAD 553
Query: 201 -SRDNRFRAMAENFRFQPDGSLSKRDKILTDM 231
+ ++ F + + +D
Sbjct: 554 LLKPDKLEEFRNRFLLLSELNSDTASAGFSDP 585
>gi|254464676|ref|ZP_05078087.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
gi|206685584|gb|EDZ46066.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
Length = 574
Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats.
Identities = 118/619 (19%), Positives = 220/619 (35%), Gaps = 105/619 (16%)
Query: 123 IQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPF 182
+D +Q K V K F + I I S DQL D LL L +F + + F
Sbjct: 21 TRDQQQEVYEKSPVLDRTVKDFTQRITSIQSADQLLDDYNLLTVTLGAFGLDEDINNRAF 80
Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAENFRF-QPDGSLSKRDKILTDMQIEKIVSNYF 241
+K VL +++PK D+R++A+AE F F DG
Sbjct: 81 IKQVLESDMSDPKSIVNRLNDSRYQALAETFGFGSADG---------------------- 118
Query: 242 NNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQ 301
+P +N + +++ D L + L + L L FL +
Sbjct: 119 ----PKLPSARAENEF----AGIATPDDLLSNRTLLRK-ALGNAGLEGLENNQFFLQKVL 169
Query: 302 ENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQ 361
E+D D SS D + + ++ +++L+ ++
Sbjct: 170 ESDL--------------DDPSSFANKLSDPRYAAFAGQFNFGQVPAYESSIEALVSEFN 215
Query: 362 LPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPS 421
+ S + LQ +D + L D LR VL S+ +
Sbjct: 216 QHTDGLAS-------------ADDLLADEDLLQAVIDTFGLE--RTYPDFLRRVLNSDTT 260
Query: 422 DPDSYANKSKDDRLIKLNHAFNFNA---DGSIGPIPMMQSRLTIRDNVKHY--------- 469
DPDS+ N+ +D R + ++ AF F + P ++ + + + +
Sbjct: 261 DPDSFVNQLEDKRYLAVSEAFGFGWPDINAMTDPEELLSNPQLLEHALDTFNVSDRGETY 320
Query: 470 ---------ANRKRSIHDAENKSFNSMEQISTQKRINLEINSEV--DYYTLNINTIHSFE 518
++ ++ EN ++ + + + +V D T + T +
Sbjct: 321 LRQVLESDLSDPNSFVNQPENLAYYNFAEAFQNEWPEPVSKMQVFADEITDKLGTFTNPR 380
Query: 519 ELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNF 578
EL+ + + L+ G + D + + F SDL SFAN + D K + +F+F
Sbjct: 381 ELVFDLGLFEATLDLFGQSKRSTDFDTVLKAFDSDLSSRTSFANMHYDTGLKAMAQAFSF 440
Query: 579 DIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNI---- 634
+ GE+S + ++ +LY + E + DPN+ LAL +R + ++
Sbjct: 441 NA-GEVSREY-----PEGFAEELAELYTTRQFEIEIGNSDPNMRLALALERELQDVVDAG 494
Query: 635 ----RNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI-------KINDFKD 683
+ Y I+G L + L L A L +++ +K DF +
Sbjct: 495 GSENAHWYNIIGSPPLRSIFETALGLPSGIAQLDIERQLEEMKDRAFSAFGTTHPADFLE 554
Query: 684 SKKVEDFLYAAKAMDHQSI 702
+ ++ F + +
Sbjct: 555 PEMLDQFRKRFLLLSDLNS 573
Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats.
Identities = 90/465 (19%), Positives = 171/465 (36%), Gaps = 52/465 (11%)
Query: 3 PSHVAPFP----SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYA 58
+ +A + ++D Q +++ K P++ + + +RI I + D+ + D L +
Sbjct: 9 GTGIAGWSFLQRTRDQQQEVYE---KSPVLDRTVKDFTQRITSIQSADQLLDDYNLLTVT 65
Query: 59 LKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQ 118
L AFGL + + FIK++LESD+SDPKS+VN+LN +YQ A ++ F +
Sbjct: 66 LGAFGLDEDINNRAFIKQVLESDMSDPKSIVNRLNDSRYQALAETFGFGSADGPKLPSAR 125
Query: 119 HKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYI 178
+ I + D L +R LL L + +
Sbjct: 126 AENE-------------------------FAGIATPDDLLSNRTLLRKALGNAGLEGLEN 160
Query: 179 SLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRF-------QPDGSLSKRDKILTDM 231
+ FL+ VL L +P + + D R+ A A F F +L TD
Sbjct: 161 NQFFLQKVLESDLDDPSSFANKLSDPRYAAFAGQFNFGQVPAYESSIEALVSEFNQHTDG 220
Query: 232 QIEKIVSNYFNNTIDCV--PIVSDQNY---YKLAINSVS----SFSDFLKDPKLFKMLQL 282
+ + V ++ Y + +NS + SF + L+D + + +
Sbjct: 221 LASADDLLADEDLLQAVIDTFGLERTYPDFLRRVLNSDTTDPDSFVNQLEDKRYLAVSEA 280
Query: 283 SLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYK 342
F L+ N + + +S +
Sbjct: 281 FGFGWPDINAMTDPEELL---SNPQLLEHALDTFNVSDRGETYLRQVLESDLSDPNSFVN 337
Query: 343 KNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQ-LEGPNSAEEPIITLQFALDAYN 401
+ + + + ++ ++ P+ K++ + ++ K P + + LD +
Sbjct: 338 QPENLAYYNFAEAFQNEWPEPVSKMQVFADEITDKLGTFTNPRELVFDLGLFEATLDLFG 397
Query: 402 LNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNA 446
+ + D D + S+ S S+AN D L + AF+FNA
Sbjct: 398 QSKRSTDFDTVLKAFDSDLSSRTSFANMHYDTGLKAMAQAFSFNA 442
Score = 86.8 bits (213), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/361 (14%), Positives = 120/361 (33%), Gaps = 62/361 (17%)
Query: 58 ALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDI 117
+ FGL F++++L SD +DP S VNQL +Y + ++ F P
Sbjct: 237 VIDTFGLERTYPD--FLRRVLNSDTTDPDSFVNQLEDKRYLAVSEAFGFGWPD------- 287
Query: 118 QHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKY 177
I+ + ++L + +LL++ L +F+++ +
Sbjct: 288 ------------------------------INAMTDPEELLSNPQLLEHALDTFNVSDR- 316
Query: 178 ISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIV 237
+L+ VL L++P + + + + AE F+ ++ + ++ MQ+
Sbjct: 317 -GETYLRQVLESDLSDPNSFVNQPENLAYYNFAEAFQ-------NEWPEPVSKMQV---- 364
Query: 238 SNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
+ + D + ++ + + D K L + ++++
Sbjct: 365 --FADEITDKLGTFTNPRELVFDLGLFEATLDLFGQSKRSTDFDTVLKAFDSDLSSRTSF 422
Query: 298 TLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLI 357
M D + + F N + S ++ ++ + +I + D L
Sbjct: 423 ANMHY-DTGLKAMAQAFSFN-AGEVSREYPEGFAEELAELYTTRQFEIEIGNSDPNMRLA 480
Query: 358 KDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLT 417
+ L + +D S + + AL L + + + L
Sbjct: 481 LALERELQDV--VDAGGSENAHWYNIIGSPPLRSIFETAL---GL-PSGIAQLDIERQLE 534
Query: 418 S 418
Sbjct: 535 E 535
>gi|260428823|ref|ZP_05782800.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260419446|gb|EEX12699.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 399
Score = 244 bits (621), Expect = 6e-62, Method: Composition-based stats.
Identities = 86/408 (21%), Positives = 160/408 (39%), Gaps = 54/408 (13%)
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
L + ++ + ++ +G I S + L++ + L AL
Sbjct: 16 TLESQRTAFNKSAEITRDSEYFKEKIGTINSAEELVNDRR-------------LLSVALS 62
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS-------IG 451
A+ ++ Q + +R VL D D+ ANK D R L F+F G
Sbjct: 63 AFGMDDQIDSKYLIRRVLEEGTKDDDALANKLSDSRFTVLAEVFDFEKTGGYRMQEEGFA 122
Query: 452 PIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNI 511
+ +++ + D E + TQ + N+EI+ E Y+ NI
Sbjct: 123 DPIFAAYEKKVLADLEVKLAEPEYVADPEYAAL-----FETQVKRNIEISRE--YFNDNI 175
Query: 512 NTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKE 571
+I S +ELL + ++ ++ + GI+ ++ + L + + DP + AN D R
Sbjct: 176 GSITSPDELLLDFDLMQVVMGAFGIEDRRGSKALLKRVLEEGASDPNALANVLGDKRLIR 235
Query: 572 IISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTI 631
+ +F+FD +Q + ++ + Y+ Q E E DP I AL F+R+I
Sbjct: 236 LAEAFSFDK-----SVPTNALQADSFANNIVEQYRWQRFEDAVGEVDPAIGTALQFQRSI 290
Query: 632 PNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIK------ 677
P++ Y ILG + VV L L F+ + K++ ILK +
Sbjct: 291 PDLATSDISDSAKWYSILGSTTSRSVVETALSLPKGFSQIDIDKQVEILKDKMDRRFGVK 350
Query: 678 -INDFKDSKKVEDFLYAAKAMD-------HQSIDYKKALFSSPNQNKD 717
++D +D + +++ + +QS L S+ ++D
Sbjct: 351 EVSDLEDPATLRKIVHSYLLQEQIAQSSGYQSNQIAITLLSTIRYDQD 398
Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats.
Identities = 72/322 (22%), Positives = 131/322 (40%), Gaps = 43/322 (13%)
Query: 20 STVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILE 79
+ +K ++ + Y++E+I I++ +E + D+RL S AL AFG+ D ++ I+++LE
Sbjct: 22 TAFNKSAEITRDSEYFKEKIGTINSAEELVNDRRLLSVALSAFGMDDQIDSKYLIRRVLE 81
Query: 80 SDLSDPKSLVNQLNSLKYQYFARSYDFS-PPPKVIQSDIQHKTIIQDYKQSHQHKEEVAL 138
D +L N+L+ ++ A +DF +Q + I Y++ EV L
Sbjct: 82 EGTKDDDALANKLSDSRFTVLAEVFDFEKTGGYRMQEEGFADPIFAAYEKKVLADLEVKL 141
Query: 139 EE------------------------SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSIT 174
E +YF NI I S D+L D L+ V+ +F I
Sbjct: 142 AEPEYVADPEYAALFETQVKRNIEISREYFNDNIGSITSPDELLLDFDLMQVVMGAFGIE 201
Query: 175 PKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIE 234
+ S LK VL G ++P D R +AE F F D S+ + D
Sbjct: 202 DRRGSKALLKRVLEEGASDPNALANVLGDKRLIRLAEAFSF--DKSVPTN-ALQADSFAN 258
Query: 235 KIVSNY-----FNNTIDCVPIVSDQNYYKLAINSVSS--------FSDFLKDPKLFKMLQ 281
IV Y + + P + ++ +I +++ + L +++
Sbjct: 259 NIVEQYRWQRFEDAVGEVDPAIGTALQFQRSIPDLATSDISDSAKWYSILGSTTSRSVVE 318
Query: 282 LSLFPLN--PEITADKFLTLMQ 301
+L +I DK + +++
Sbjct: 319 TALSLPKGFSQIDIDKQVEILK 340
Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/253 (18%), Positives = 95/253 (37%), Gaps = 31/253 (12%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+++E T + EI + +Y+ I TI+S EEL+ ++R+L+ L + G+D Q +
Sbjct: 15 STLESQRTAFNKSAEITRDSEYFKEKIGTINSAEELVNDRRLLSVALSAFGMDDQIDSKY 74
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
+ + + KD + AN D+R+ + F+F+ G ++Q+ D
Sbjct: 75 LIRRVLEEGTKDDDALANKLSDSRFTVLAEVFDFEKTGGY------RMQEEGFADPIFAA 128
Query: 605 YKHQ----------------------MIEKKEEEKDPNIALALYFKRTIPNIRNHYEILG 642
Y+ + + E + + YF I +I + E+L
Sbjct: 129 YEKKVLADLEVKLAEPEYVADPEYAALFETQVKRNIEISRE--YFNDNIGSITSPDELLL 186
Query: 643 DSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSI 702
D L +VV + K++ + + N + + + A+A
Sbjct: 187 DFDLMQVVMGAFGIEDRRGSKALLKRV-LEEGASDPNALANVLGDKRLIRLAEAFSFDKS 245
Query: 703 DYKKALFSSPNQN 715
AL + N
Sbjct: 246 VPTNALQADSFAN 258
Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats.
Identities = 57/315 (18%), Positives = 114/315 (36%), Gaps = 35/315 (11%)
Query: 117 IQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
Q + +++ +K +S+YF++ I INS ++L DRRLL L +F + +
Sbjct: 10 WQMLQSTLESQRTAFNKSAEITRDSEYFKEKIGTINSAEELVNDRRLLSVALSAFGMDDQ 69
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGS-------------LSK 223
S ++ VL G + + D+RF +AE F F+ G +
Sbjct: 70 IDSKYLIRRVLEEGTKDDDALANKLSDSRFTVLAEVFDFEKTGGYRMQEEGFADPIFAAY 129
Query: 224 RDKILTDMQIEKIVSNYFN--------NTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPK 275
K+L D++++ Y T I + Y+ I S++S + L D
Sbjct: 130 EKKVLADLEVKLAEPEYVADPEYAALFETQVKRNIEISREYFNDNIGSITSPDELLLDFD 189
Query: 276 LFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYF--------FQINFHRDNSSSTK 327
L +++ + + + +++E + + F D S T
Sbjct: 190 LMQVVMGAFGIEDRRGSKALLKRVLEEGASDPNALANVLGDKRLIRLAEAFSFDKSVPTN 249
Query: 328 I-QQDSQIQKMLDLY---KKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGP 383
Q DS +++ Y + + D +Q + + + D +S +
Sbjct: 250 ALQADSFANNIVEQYRWQRFEDAVGEVDPAIGTALQFQRSIPDLATSD--ISDSAKWYSI 307
Query: 384 NSAEEPIITLQFALD 398
+ ++ AL
Sbjct: 308 LGSTTSRSVVETALS 322
>gi|256014917|ref|YP_003104926.1| hypothetical protein BMI_II127 [Brucella microti CCM 4915]
gi|255997577|gb|ACU49264.1| hypothetical protein BMI_II127 [Brucella microti CCM 4915]
Length = 258
Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
++M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 9 SNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKA 68
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I + D + AN D RYKE + F+F G + Q D
Sbjct: 69 FVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT------QSTAAQQGVIDK 122
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +EK+ ++ + LALYF+R P++ N YEILGD L +V +
Sbjct: 123 YVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNAD 182
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
K+ +++ I + D V F+ AM
Sbjct: 183 IDKQAKMIADKIDFSKMSDPDYVSKFISRFTAMH 216
Score = 177 bits (448), Expect = 8e-42, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 6 VAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLS 65
+ ++ VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL
Sbjct: 2 TSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLE 61
Query: 66 DMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQHKTIIQ 124
DM++A+ F++KIL ++D ++ N+L +Y+ FA +DF + QS + +I
Sbjct: 62 DMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVID 121
Query: 125 DYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
Y + KE + + YF + + + ++ D+ LL V +F +
Sbjct: 122 KYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNA 181
Query: 181 PFLKDV 186
K
Sbjct: 182 DIDKQA 187
Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI + SVD D RL +Y +++F + + F++ +LT
Sbjct: 16 QRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILT 75
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + + ++ Y T++
Sbjct: 76 EGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT----QSTAAQQGVIDKYVRQTLEKE 131
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ S+++ + L D L M+Q + + AD
Sbjct: 132 AGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNAD 182
Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 42/238 (17%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ Y+ +G +KS+D+ ++ +A+ A+ L
Sbjct: 18 VSKEPLVERETAYYKENIGNVKSVDDFMADTR-------------LFNYAMKAFGLEDMA 64
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R +LT +D D+ ANK D R + F+F G+ + I V
Sbjct: 65 YAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYV 124
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + E Y+ ++ + E+L +K +
Sbjct: 125 RQTLEK--------------------EAGSQNEGVRLALYFERKAPSLTNAYEILGDKAL 164
Query: 527 LNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFN 577
L + + G D K + +I S + DP + + + +R+ + N
Sbjct: 165 LTMVQTTFGWPSTMSNADIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHEMNN 220
Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 21/220 (9%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
I ++ + + YYK I +V S DF+ D +LF + F L
Sbjct: 7 IASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNY-AMKAFGLEDMAY 65
Query: 293 ADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
A F+ + F F + Q + Q ++D Y +
Sbjct: 66 AKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVR 125
Query: 344 NCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAY 400
L ++ + + +L K L + T+ A
Sbjct: 126 QTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNA---- 181
Query: 401 NLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNH 440
++ + + S SDPD Y +K R ++
Sbjct: 182 --DIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHE 217
>gi|306841068|ref|ZP_07473791.1| flagellar basal-body rod protein FLGF [Brucella sp. BO2]
gi|306288906|gb|EFM60209.1| flagellar basal-body rod protein FLGF [Brucella sp. BO2]
Length = 262
Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
++M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 13 SNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I + D + AN D RYKE + F+F G + Q D
Sbjct: 73 FVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT------QSTAAQQGVIDK 126
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +EK+ ++ + LALYF+R P++ N YEILGD L +V +
Sbjct: 127 YVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNAD 186
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
K+ +++ I + D V F+ AM
Sbjct: 187 IDKQAKMIADKIDFSKMSDPDYVSKFISRFTAMH 220
Score = 181 bits (458), Expect = 5e-43, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + ++ VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+K
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQH 119
AFGL DM++A+ F++KIL ++D ++ N+L +Y+ FA +DF + QS
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQ 120
Query: 120 KTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ +I Y + KE + + YF + + + ++ D+ LL V +F
Sbjct: 121 QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPS 180
Query: 176 KYISLPFLKDV 186
+ K
Sbjct: 181 TMSNADIDKQA 191
Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI + SVD D RL +Y +++F + + F++ +LT
Sbjct: 20 QRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILT 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + + ++ Y T++
Sbjct: 80 EGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT----QSTAAQQGVIDKYVRQTLEKE 135
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ S+++ + L D L M+Q + + AD
Sbjct: 136 AGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNAD 186
Score = 93.4 bits (230), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 42/238 (17%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ Y+ +G +KS+D+ ++ +A+ A+ L
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTR-------------LFNYAMKAFGLEDMA 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R +LT +D D+ ANK D R + F+F G+ + I V
Sbjct: 69 YAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYV 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + E Y+ ++ + E+L +K +
Sbjct: 129 RQTLEK--------------------EAGSQNEGVRLALYFERKAPSLTNAYEILGDKAL 168
Query: 527 LNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFN 577
L + + G D K + +I S + DP + + + +R+ + N
Sbjct: 169 LTMVQTTFGWPSTMSNADIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHEMNN 224
Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 21/228 (9%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
D + + I ++ + + YYK I +V S DF+ D +LF +
Sbjct: 3 DTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNY-AMKA 61
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQ 335
F L A F+ + F F + Q + Q
Sbjct: 62 FGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ 121
Query: 336 KMLDLYKKNCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
++D Y + L ++ + + +L K L + T
Sbjct: 122 GVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPST 181
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNH 440
+ A ++ + + S SDPD Y +K R ++
Sbjct: 182 MSNA------DIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHE 221
>gi|17989453|ref|NP_542086.1| flagellar basal-body rod protein FLGF [Brucella melitensis bv. 1
str. 16M]
gi|148558502|ref|YP_001257193.1| hypothetical protein BOV_A0118 [Brucella ovis ATCC 25840]
gi|225628602|ref|ZP_03786636.1| flagellar basal-body rod protein FLGF [Brucella ceti str. Cudo]
gi|225685988|ref|YP_002733960.1| hypothetical protein BMEA_B0130 [Brucella melitensis ATCC 23457]
gi|254699438|ref|ZP_05161266.1| hypothetical protein Bsuib55_01044 [Brucella suis bv. 5 str. 513]
gi|254706315|ref|ZP_05168143.1| hypothetical protein BpinM_04810 [Brucella pinnipedialis
M163/99/10]
gi|254711393|ref|ZP_05173204.1| hypothetical protein BpinB_14282 [Brucella pinnipedialis B2/94]
gi|254720630|ref|ZP_05182441.1| hypothetical protein Bru83_14188 [Brucella sp. 83/13]
gi|256029977|ref|ZP_05443591.1| hypothetical protein BpinM2_04885 [Brucella pinnipedialis
M292/94/1]
gi|256043050|ref|ZP_05445995.1| hypothetical protein Bmelb1R_01137 [Brucella melitensis bv. 1 str.
Rev.1]
gi|256059630|ref|ZP_05449827.1| hypothetical protein Bneo5_04665 [Brucella neotomae 5K33]
gi|256111964|ref|ZP_05452915.1| hypothetical protein Bmelb3E_04760 [Brucella melitensis bv. 3 str.
Ether]
gi|256158142|ref|ZP_05456058.1| hypothetical protein BcetM4_04805 [Brucella ceti M490/95/1]
gi|256252907|ref|ZP_05458443.1| hypothetical protein BcetB_01052 [Brucella ceti B1/94]
gi|256262886|ref|ZP_05465418.1| flagellar basal-body rod protein FLGF [Brucella melitensis bv. 2
str. 63/9]
gi|260564282|ref|ZP_05834767.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1
str. 16M]
gi|261219996|ref|ZP_05934277.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261313762|ref|ZP_05952959.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261318999|ref|ZP_05958196.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261323600|ref|ZP_05962797.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261749889|ref|ZP_05993598.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|265985674|ref|ZP_06098409.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|265986998|ref|ZP_06099555.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265989488|ref|ZP_06102045.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|265993413|ref|ZP_06105970.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265996659|ref|ZP_06109216.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|294853151|ref|ZP_06793823.1| hypothetical protein BAZG_02096 [Brucella sp. NVSL 07-0026]
gi|306837354|ref|ZP_07470233.1| flagellar basal-body rod protein FLGF [Brucella sp. NF 2653]
gi|306846299|ref|ZP_07478860.1| flagellar basal-body rod protein FLGF [Brucella sp. BO1]
gi|17985332|gb|AAL54350.1| flagellar basal-body rod protein flgf [Brucella melitensis bv. 1
str. 16M]
gi|148369787|gb|ABQ62659.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
gi|225616448|gb|EEH13496.1| flagellar basal-body rod protein FLGF [Brucella ceti str. Cudo]
gi|225642093|gb|ACO02006.1| protein of unknown function DUF1217 [Brucella melitensis ATCC
23457]
gi|260151925|gb|EEW87018.1| flagellar basal body rod protein FlgF [Brucella melitensis bv. 1
str. 16M]
gi|260918580|gb|EEX85233.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261298222|gb|EEY01719.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261299580|gb|EEY03077.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261302788|gb|EEY06285.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261739642|gb|EEY27568.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|262550956|gb|EEZ07117.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|262764283|gb|EEZ10315.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263000157|gb|EEZ12847.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263092723|gb|EEZ16932.1| flagellar basal-body rod protein FLGF [Brucella melitensis bv. 2
str. 63/9]
gi|264659195|gb|EEZ29456.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|264664266|gb|EEZ34527.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|294818806|gb|EFG35806.1| hypothetical protein BAZG_02096 [Brucella sp. NVSL 07-0026]
gi|306273294|gb|EFM55163.1| flagellar basal-body rod protein FLGF [Brucella sp. BO1]
gi|306407546|gb|EFM63746.1| flagellar basal-body rod protein FLGF [Brucella sp. NF 2653]
gi|326410314|gb|ADZ67378.1| flagellar basal-body rod protein FLGF [Brucella melitensis M28]
gi|326553607|gb|ADZ88246.1| flagellar basal-body rod protein FLGF [Brucella melitensis M5-90]
Length = 262
Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
++M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 13 SNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I + D + AN D RYKE + F+F G + Q D
Sbjct: 73 FVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT------QSTAAQQGVIDK 126
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +EK+ ++ + LALYF+R P++ N YEILGD L +V +
Sbjct: 127 YVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNAD 186
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
K+ +++ I + D V F+ AM
Sbjct: 187 IDKQAKMIADKIDFSKMSDPDYVSKFISRFTAMH 220
Score = 180 bits (457), Expect = 6e-43, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + ++ VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+K
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQH 119
AFGL DM++A+ F++KIL ++D ++ N+L +Y+ FA +DF + QS
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQ 120
Query: 120 KTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ +I Y + KE + + YF + + + ++ D+ LL V +F
Sbjct: 121 QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPS 180
Query: 176 KYISLPFLKDV 186
+ K
Sbjct: 181 TMSNADIDKQA 191
Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI + SVD D RL +Y +++F + + F++ +LT
Sbjct: 20 QRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILT 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + + ++ Y T++
Sbjct: 80 EGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT----QSTAAQQGVIDKYVRQTLEKE 135
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ S+++ + L D L M+Q + + AD
Sbjct: 136 AGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNAD 186
Score = 93.4 bits (230), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 42/238 (17%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ Y+ +G +KS+D+ ++ +A+ A+ L
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTR-------------LFNYAMKAFGLEDMA 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R +LT +D D+ ANK D R + F+F G+ + I V
Sbjct: 69 YAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYV 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + E Y+ ++ + E+L +K +
Sbjct: 129 RQTLEK--------------------EAGSQNEGVRLALYFERKAPSLTNAYEILGDKAL 168
Query: 527 LNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFN 577
L + + G D K + +I S + DP + + + +R+ + N
Sbjct: 169 LTMVQTTFGWPSTMSNADIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHEMNN 224
Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 21/228 (9%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
D + + I ++ + + YYK I +V S DF+ D +LF +
Sbjct: 3 DTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNY-AMKA 61
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQ 335
F L A F+ + F F + Q + Q
Sbjct: 62 FGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ 121
Query: 336 KMLDLYKKNCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
++D Y + L ++ + + +L K L + T
Sbjct: 122 GVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPST 181
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNH 440
+ A ++ + + S SDPD Y +K R ++
Sbjct: 182 MSNA------DIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHE 221
>gi|110632663|ref|YP_672871.1| hypothetical protein Meso_0302 [Mesorhizobium sp. BNC1]
gi|110283647|gb|ABG61706.1| protein of unknown function DUF1217 [Chelativorans sp. BNC1]
Length = 258
Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 112/242 (46%), Gaps = 9/242 (3%)
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
+ + +E+ + ++ E YY NI + S EE +A+ R+ + +++ G
Sbjct: 4 TYTSYQLIVRDIERSIDRVEQQPMVSRETAYYQENIGKVKSIEEFVADDRLFRYAMKAHG 63
Query: 536 IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDN 595
++ + + + + + D SF N D RYK+ + +FNF +GE +
Sbjct: 64 LEDMAYAKALMVKALEGGIDDEDSFVNKLTDKRYKDFVDTFNFARYGEKTTTFHSST--- 120
Query: 596 FHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLK 655
T + Y Q +E+ ++ + LALYF+R +++++YEIL D L +VV L
Sbjct: 121 ---TGTVEKYLRQTLEEDAGNQNEGVRLALYFQRKAGSLKSYYEILADPALSQVVRTALG 177
Query: 656 LSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM---DHQSIDYKKALFSSP 712
A K+ ++K+ + + + D +K+E+FL + D+ S + ++ +
Sbjct: 178 FPDALAQADIDKQAEMIKERLDLEELNDPEKLEEFLQRFTTLWEIDNPSFSPQSSIAALF 237
Query: 713 NQ 714
+Q
Sbjct: 238 SQ 239
Score = 167 bits (423), Expect = 6e-39, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 7/181 (3%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
MI ++ + +DI+ + V + P+VS E YY+E I + +I+EF+ D RLF YA+
Sbjct: 1 MINTYTSYQLIVRDIERSI-DRVEQQPMVSRETAYYQENIGKVKSIEEFVADDRLFRYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQ----- 114
KA GL DM++A+ + K LE + D S VN+L +Y+ F +++F+ +
Sbjct: 60 KAHGLEDMAYAKALMVKALEGGIDDEDSFVNKLTDKRYKDFVDTFNFARYGEKTTTFHSS 119
Query: 115 SDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSIT 174
+ + ++ + + + + YF++ + S ++ D L V +
Sbjct: 120 TTGTVEKYLRQTLEEDAGNQNEGVRLALYFQRKAGSLKSYYEILADPALSQVVRTALGFP 179
Query: 175 P 175
Sbjct: 180 D 180
Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats.
Identities = 35/185 (18%), Positives = 81/185 (43%), Gaps = 3/185 (1%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
I + ++ I++D ++S ++ + E+ Y+++NI K+ S+++ D RL Y +++
Sbjct: 2 INTYTSYQLIVRDIERSIDRVEQQPMVSRETAYYQENIGKVKSIEEFVADDRLFRYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + + L G+ + + + D R++ + F F G + T
Sbjct: 62 HGLEDMAYAKALMVKALEGGIDDEDSFVNKLTDKRYKDFVDTFNFARYGEKTTTFHSSTT 121
Query: 231 MQIEKIVSNYFNN-TIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNP 289
+EK + + V Y++ S+ S+ + L DP L ++++ +L +
Sbjct: 122 GTVEKYLRQTLEEDAGNQNEGVRLALYFQRKAGSLKSYYEILADPALSQVVRTALGFPDA 181
Query: 290 EITAD 294
AD
Sbjct: 182 LAQAD 186
Score = 87.6 bits (215), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/192 (15%), Positives = 59/192 (30%), Gaps = 34/192 (17%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
YQ +GK+KSI+ ++ ++A+ A+ L + + L
Sbjct: 32 TAYYQENIGKVKSIEEFVADDR-------------LFRYAMKAHGLEDMAYAKALMVKAL 78
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSI 476
D DS+ NK D R FNF G + T+ ++
Sbjct: 79 EGGIDDEDSFVNKLTDKRYKDFVDTFNFARYGEKTTTFHSSTTGTVEKYLRQTLEE---- 134
Query: 477 HDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGI 536
E Y+ ++ S+ E+LA+ + + + G
Sbjct: 135 ----------------DAGNQNEGVRLALYFQRKAGSLKSYYEILADPALSQVVRTALGF 178
Query: 537 DSQKVREDFLCE 548
+ + + +
Sbjct: 179 -PDALAQADIDK 189
>gi|83269072|ref|YP_418363.1| flagellar basal-body rod protein FlgF [Brucella melitensis biovar
Abortus 2308]
gi|82939346|emb|CAJ12293.1| flagellar basal-body rod protein FlgF [Brucella melitensis biovar
Abortus 2308]
Length = 258
Score = 237 bits (603), Expect = 6e-60, Method: Composition-based stats.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
++M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 9 SNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKA 68
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I + D + AN D RYKE + F+F G + Q D
Sbjct: 69 FVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT------QSTAAQQGVIDK 122
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +EK+ ++ + LALYF+R P++ N YEILGD L ++ +
Sbjct: 123 YVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFGWPSTMSNAD 182
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
K+ +++ I + D V F+ AM
Sbjct: 183 IDKQAKMIADKIDFSKMSDPDYVSKFISRFTAMH 216
Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 6 VAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLS 65
+ ++ VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL
Sbjct: 2 TSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLE 61
Query: 66 DMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQHKTIIQ 124
DM++A+ F++KIL ++D ++ N+L +Y+ FA +DF + QS + +I
Sbjct: 62 DMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVID 121
Query: 125 DYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
Y + KE + + YF + + + ++ D+ LL + +F +
Sbjct: 122 KYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFGWPSTMSNA 181
Query: 181 PFLKDV 186
K
Sbjct: 182 DIDKQA 187
Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI + SVD D RL +Y +++F + + F++ +LT
Sbjct: 16 QRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILT 75
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + + ++ Y T++
Sbjct: 76 EGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT----QSTAAQQGVIDKYVRQTLEKE 131
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ S+++ + L D L MLQ + + AD
Sbjct: 132 AGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFGWPSTMSNAD 182
Score = 93.0 bits (229), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 42/238 (17%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ Y+ +G +KS+D+ ++ +A+ A+ L
Sbjct: 18 VSKEPLVERETAYYKENIGNVKSVDDFMADTR-------------LFNYAMKAFGLEDMA 64
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R +LT +D D+ ANK D R + F+F G+ + I V
Sbjct: 65 YAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYV 124
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + E Y+ ++ + E+L +K +
Sbjct: 125 RQTLEK--------------------EAGSQNEGVRLALYFERKAPSLTNAYEILGDKAL 164
Query: 527 LNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFN 577
L L + G D K + +I S + DP + + + +R+ + N
Sbjct: 165 LTMLQTTFGWPSTMSNADIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHEMNN 220
Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/220 (16%), Positives = 65/220 (29%), Gaps = 21/220 (9%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
I ++ + + YYK I +V S DF+ D +LF + F L
Sbjct: 7 IASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNY-AMKAFGLEDMAY 65
Query: 293 ADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
A F+ + F F + Q + Q ++D Y +
Sbjct: 66 AKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVR 125
Query: 344 NCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAY 400
L ++ + + +L K L + T+ A
Sbjct: 126 QTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFGWPSTMSNA---- 181
Query: 401 NLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNH 440
++ + + S SDPD Y +K R ++
Sbjct: 182 --DIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHE 217
>gi|62317079|ref|YP_222932.1| hypothetical protein BruAb2_0125 [Brucella abortus bv. 1 str.
9-941]
gi|189022346|ref|YP_001932087.1| Flagellar basal-body rod protein FLGF [Brucella abortus S19]
gi|237816641|ref|ZP_04595633.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|254691432|ref|ZP_05154686.1| Flagellar basal-body rod protein FLGF [Brucella abortus bv. 6 str.
870]
gi|254695269|ref|ZP_05157097.1| Flagellar basal-body rod protein FLGF [Brucella abortus bv. 3 str.
Tulya]
gi|254698368|ref|ZP_05160196.1| Flagellar basal-body rod protein FLGF [Brucella abortus bv. 2 str.
86/8/59]
gi|254731813|ref|ZP_05190391.1| Flagellar basal-body rod protein FLGF [Brucella abortus bv. 4 str.
292]
gi|256256618|ref|ZP_05462154.1| Flagellar basal-body rod protein FLGF [Brucella abortus bv. 9 str.
C68]
gi|260544320|ref|ZP_05820141.1| flagellar basal-body rod protein FLGF [Brucella abortus NCTC 8038]
gi|260757050|ref|ZP_05869398.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260759579|ref|ZP_05871927.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260762823|ref|ZP_05875155.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260882860|ref|ZP_05894474.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261215635|ref|ZP_05929916.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|297249975|ref|ZP_06933676.1| hypothetical protein BAYG_02750 [Brucella abortus bv. 5 str. B3196]
gi|62197272|gb|AAX75571.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|189020920|gb|ACD73641.1| Flagellar basal-body rod protein FLGF [Brucella abortus S19]
gi|237787454|gb|EEP61670.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|260097591|gb|EEW81465.1| flagellar basal-body rod protein FLGF [Brucella abortus NCTC 8038]
gi|260669897|gb|EEX56837.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
gi|260673244|gb|EEX60065.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260677158|gb|EEX63979.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260872388|gb|EEX79457.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260917242|gb|EEX84103.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|297173844|gb|EFH33208.1| hypothetical protein BAYG_02750 [Brucella abortus bv. 5 str. B3196]
Length = 262
Score = 237 bits (603), Expect = 8e-60, Method: Composition-based stats.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
++M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 13 SNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I + D + AN D RYKE + F+F G + Q D
Sbjct: 73 FVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT------QSTAAQQGVIDK 126
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +EK+ ++ + LALYF+R P++ N YEILGD L ++ +
Sbjct: 127 YVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFGWPSTMSNAD 186
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
K+ +++ I + D V F+ AM
Sbjct: 187 IDKQAKMIADKIDFSKMSDPDYVSKFISRFTAMH 220
Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats.
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + ++ VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+K
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQH 119
AFGL DM++A+ F++KIL ++D ++ N+L +Y+ FA +DF + QS
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQ 120
Query: 120 KTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ +I Y + KE + + YF + + + ++ D+ LL + +F
Sbjct: 121 QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFGWPS 180
Query: 176 KYISLPFLKDV 186
+ K
Sbjct: 181 TMSNADIDKQA 191
Score = 130 bits (327), Expect = 6e-28, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI + SVD D RL +Y +++F + + F++ +LT
Sbjct: 20 QRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILT 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + + ++ Y T++
Sbjct: 80 EGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT----QSTAAQQGVIDKYVRQTLEKE 135
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ S+++ + L D L MLQ + + AD
Sbjct: 136 AGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFGWPSTMSNAD 186
Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 82/238 (34%), Gaps = 42/238 (17%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ Y+ +G +KS+D+ ++ +A+ A+ L
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTR-------------LFNYAMKAFGLEDMA 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R +LT +D D+ ANK D R + F+F G+ + I V
Sbjct: 69 YAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYV 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + E Y+ ++ + E+L +K +
Sbjct: 129 RQTLEK--------------------EAGSQNEGVRLALYFERKAPSLTNAYEILGDKAL 168
Query: 527 LNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFN 577
L L + G D K + +I S + DP + + + +R+ + N
Sbjct: 169 LTMLQTTFGWPSTMSNADIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHEMNN 224
Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 68/228 (29%), Gaps = 21/228 (9%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
D + + I ++ + + YYK I +V S DF+ D +LF +
Sbjct: 3 DTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNY-AMKA 61
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQ 335
F L A F+ + F F + Q + Q
Sbjct: 62 FGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ 121
Query: 336 KMLDLYKKNCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
++D Y + L ++ + + +L K L + T
Sbjct: 122 GVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMLQTTFGWPST 181
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNH 440
+ A ++ + + S SDPD Y +K R ++
Sbjct: 182 MSNA------DIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHE 221
>gi|254711992|ref|ZP_05173803.1| hypothetical protein BcetM6_01082 [Brucella ceti M644/93/1]
gi|254715062|ref|ZP_05176873.1| hypothetical protein BcetM_01092 [Brucella ceti M13/05/1]
gi|261216769|ref|ZP_05931050.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261319636|ref|ZP_05958833.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|260921858|gb|EEX88426.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261292326|gb|EEX95822.1| conserved hypothetical protein [Brucella ceti M644/93/1]
Length = 262
Score = 237 bits (603), Expect = 8e-60, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
++M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 13 SNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I + D + AN D RYKE + F+F G + Q D
Sbjct: 73 FVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT------QSTAAQQGVIDK 126
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +EK+ ++ + LALYF+R P++ N YEILGD L +V +
Sbjct: 127 YVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNAD 186
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
K+ +++ I + D V F+ AM
Sbjct: 187 IDKQAKMIADKIDFSKMSDPDYVSKFISRITAMH 220
Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + ++ VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+K
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQH 119
AFGL DM++A+ F++KIL ++D ++ N+L +Y+ FA +DF + QS
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQ 120
Query: 120 KTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ +I Y + KE + + YF + + + ++ D+ LL V +F
Sbjct: 121 QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPS 180
Query: 176 KYISLPFLKDV 186
+ K
Sbjct: 181 TMSNADIDKQA 191
Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI + SVD D RL +Y +++F + + F++ +LT
Sbjct: 20 QRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILT 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + + ++ Y T++
Sbjct: 80 EGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT----QSTAAQQGVIDKYVRQTLEKE 135
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ S+++ + L D L M+Q + + AD
Sbjct: 136 AGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPSTMSNAD 186
Score = 93.0 bits (229), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 40/219 (18%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ Y+ +G +KS+D+ ++ +A+ A+ L
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTR-------------LFNYAMKAFGLEDMA 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R +LT +D D+ ANK D R + F+F G+ + I V
Sbjct: 69 YAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYV 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + E Y+ ++ + E+L +K +
Sbjct: 129 RQTLEK--------------------EAGSQNEGVRLALYFERKAPSLTNAYEILGDKAL 168
Query: 527 LNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPK 558
L + + G D K + +I S + DP
Sbjct: 169 LTMVQTTFGWPSTMSNADIDKQAKMIADKIDFSKMSDPD 207
Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 19/213 (8%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
D + + I ++ + + YYK I +V S DF+ D +LF +
Sbjct: 3 DTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNY-AMKA 61
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQ 335
F L A F+ + F F + Q + Q
Sbjct: 62 FGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ 121
Query: 336 KMLDLYKKNCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
++D Y + L ++ + + +L K L + T
Sbjct: 122 GVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWPST 181
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDS 425
+ A ++ + + S SDPD
Sbjct: 182 MSNA------DIDKQAKMIADKIDFSKMSDPDY 208
>gi|239834449|ref|ZP_04682777.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
gi|239822512|gb|EEQ94081.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
Length = 264
Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats.
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 6/213 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ M + + + E YY NI + S ++ +A+ R+ N+ L++ G++ +
Sbjct: 15 SDMARSLQRVSKEPMVERETAYYKENIGKVKSVDDFMADSRLYNYALKAFGLEDMAFAKA 74
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I +K + AN D RYKE + F+F+ G + Q D
Sbjct: 75 FVRKILTEGIKSDDAMANKLTDKRYKEFATVFDFEGKGAEAT------QSTAAQQGVVDK 128
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +E + ++ + LALYF+R P + N YEILGD L ++ +
Sbjct: 129 YLRQTLETEAGSQNEGVRLALYFQRKAPTLTNAYEILGDKALVSMIQTTFGWPSTISNAD 188
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
K+ ++++ I D V + AM
Sbjct: 189 IDKQAKMIEDKIDFTKMSDPDYVSKLISRFTAM 221
Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats.
Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + ++ VSK+P+V E YY+E I + ++D+F+ D RL++YALK
Sbjct: 3 MVDTMTSYRLIASDMARSLQRVSKEPMVERETAYYKENIGKVKSVDDFMADSRLYNYALK 62
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQH 119
AFGL DM+ A+ F++KIL + ++ N+L +Y+ FA +DF + QS
Sbjct: 63 AFGLEDMAFAKAFVRKILTEGIKSDDAMANKLTDKRYKEFATVFDFEGKGAEATQSTAAQ 122
Query: 120 KTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ ++ Y + E + + YF++ + + ++ D+ L+ + +F
Sbjct: 123 QGVVDKYLRQTLETEAGSQNEGVRLALYFQRKAPTLTNAYEILGDKALVSMIQTTFGWPS 182
Query: 176 KYISLPFLKDV 186
+ K
Sbjct: 183 TISNADIDKQA 193
Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats.
Identities = 37/171 (21%), Positives = 76/171 (44%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI K+ SVD D RL +Y L++F + + F++ +LT
Sbjct: 22 QRVSKEPMVERETAYYKENIGKVKSVDDFMADSRLYNYALKAFGLEDMAFAKAFVRKILT 81
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F+ G+ + + + +V Y T++
Sbjct: 82 EGIKSDDAMANKLTDKRYKEFATVFDFEGKGA----EATQSTAAQQGVVDKYLRQTLETE 137
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ ++++ + L D L M+Q + + AD
Sbjct: 138 AGSQNEGVRLALYFQRKAPTLTNAYEILGDKALVSMIQTTFGWPSTISNAD 188
Score = 93.0 bits (229), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/213 (15%), Positives = 72/213 (33%), Gaps = 33/213 (15%)
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFA 396
D+ + ++ + ++ Y+ +GK+KS+D+ ++ +A
Sbjct: 14 ASDMARSLQRVSKEPMVERETAYYKENIGKVKSVDDFMADSR-------------LYNYA 60
Query: 397 LDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM 456
L A+ L + +R +LT D+ ANK D R + F+F G+
Sbjct: 61 LKAFGLEDMAFAKAFVRKILTEGIKSDDAMANKLTDKRYKEFATVFDFEGKGAEATQSTA 120
Query: 457 QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
+ + ++ T+ E Y+ T+ +
Sbjct: 121 AQQGVVDKYLRQTLE--------------------TEAGSQNEGVRLALYFQRKAPTLTN 160
Query: 517 FEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
E+L +K +++ + + G S D +
Sbjct: 161 AYEILGDKALVSMIQTTFGWPSTISNADIDKQA 193
Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 21/226 (9%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
D + + I ++ + + YYK I V S DF+ D +L+ L
Sbjct: 5 DTMTSYRLIASDMARSLQRVSKEPMVERETAYYKENIGKVKSVDDFMADSRLYNY-ALKA 63
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQ 335
F L A F+ + F F + + Q + Q
Sbjct: 64 FGLEDMAFAKAFVRKILTEGIKSDDAMANKLTDKRYKEFATVFDFEGKGAEATQSTAAQQ 123
Query: 336 KMLDLYKKNCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
++D Y + L +Q + + +L K + + T
Sbjct: 124 GVVDKYLRQTLETEAGSQNEGVRLALYFQRKAPTLTNAYEILGDKALVSMIQTTFGWPST 183
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKL 438
+ A ++ + + + SDPD Y +K R +
Sbjct: 184 ISNA------DIDKQAKMIEDKIDFTKMSDPD-YVSKLI-SRFTAM 221
>gi|23499890|ref|NP_699330.1| hypothetical protein BRA0127 [Brucella suis 1330]
gi|23463465|gb|AAN33335.1| conserved hypothetical protein [Brucella suis 1330]
Length = 258
Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
++M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 9 SNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKA 68
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I + D + AN D RYKE + F+F G + Q D
Sbjct: 69 FVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT------QSTAAQQGVIDK 122
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +EK+ ++ + LALYF+R P++ N YEILGD L +V +
Sbjct: 123 YVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMSNAD 182
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
K+ +++ I + D V F+ AM
Sbjct: 183 IDKQAKMIADKIDFSKMSDPDYVLKFISRFTAMH 216
Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 6 VAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLS 65
+ ++ VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+KAFGL
Sbjct: 2 TSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLE 61
Query: 66 DMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQHKTIIQ 124
DM++A+ F++KIL ++D ++ N+L +Y+ FA +DF + QS + +I
Sbjct: 62 DMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVID 121
Query: 125 DYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
Y + KE + + YF + + + ++ D+ LL V +F +
Sbjct: 122 KYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMSNA 181
Query: 181 PFLKDV 186
K
Sbjct: 182 DIDKQA 187
Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI + SVD D RL +Y +++F + + F++ +LT
Sbjct: 16 QRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILT 75
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + + ++ Y T++
Sbjct: 76 EGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT----QSTAAQQGVIDKYVRQTLEKE 131
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ S+++ + L D L M+Q + L+ AD
Sbjct: 132 AGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMSNAD 182
Score = 93.0 bits (229), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 40/219 (18%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ Y+ +G +KS+D+ ++ +A+ A+ L
Sbjct: 18 VSKEPLVERETAYYKENIGNVKSVDDFMADTR-------------LFNYAMKAFGLEDMA 64
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R +LT +D D+ ANK D R + F+F G+ + I V
Sbjct: 65 YAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYV 124
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + E Y+ ++ + E+L +K +
Sbjct: 125 RQTLEK--------------------EAGSQNEGVRLALYFERKAPSLTNAYEILGDKAL 164
Query: 527 LNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPK 558
L + + G D K + +I S + DP
Sbjct: 165 LTMVQTTFGWLSTMSNADIDKQAKMIADKIDFSKMSDPD 203
Score = 52.9 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 19/205 (9%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
I ++ + + YYK I +V S DF+ D +LF + F L
Sbjct: 7 IASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNY-AMKAFGLEDMAY 65
Query: 293 ADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
A F+ + F F + Q + Q ++D Y +
Sbjct: 66 AKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYVR 125
Query: 344 NCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAY 400
L ++ + + +L K L + + T+ A
Sbjct: 126 QTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMSNA---- 181
Query: 401 NLNMQDLDRDQLRNVLTSNPSDPDS 425
++ + + S SDPD
Sbjct: 182 --DIDKQAKMIADKIDFSKMSDPDY 204
>gi|163844322|ref|YP_001621977.1| hypothetical protein BSUIS_B0133 [Brucella suis ATCC 23445]
gi|163675045|gb|ABY39155.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 262
Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
++M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 13 SNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I + D + AN D RYKE + F+F G + Q D
Sbjct: 73 FVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT------QSTAAQQGVIDK 126
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +EK+ ++ + LALYF+R P++ N YEILGD L +V +
Sbjct: 127 YVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMSNAD 186
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
K+ +++ I + D V F+ AM
Sbjct: 187 IDKQAKMIADKIDFSKMSDPDYVSKFISRFTAMH 220
Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + ++ VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+K
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQH 119
AFGL DM++A+ F++KIL ++D ++ N+L +Y+ FA +DF + QS
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQ 120
Query: 120 KTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ +I Y + KE + + YF + + + ++ D+ LL V +F
Sbjct: 121 QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLS 180
Query: 176 KYISLPFLKDV 186
+ K
Sbjct: 181 TMSNADIDKQA 191
Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI + SVD D RL +Y +++F + + F++ +LT
Sbjct: 20 QRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILT 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + + ++ Y T++
Sbjct: 80 EGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT----QSTAAQQGVIDKYVRQTLEKE 135
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ S+++ + L D L M+Q + L+ AD
Sbjct: 136 AGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMSNAD 186
Score = 93.0 bits (229), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 82/238 (34%), Gaps = 42/238 (17%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ Y+ +G +KS+D+ ++ +A+ A+ L
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTR-------------LFNYAMKAFGLEDMA 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R +LT +D D+ ANK D R + F+F G+ + I V
Sbjct: 69 YAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYV 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + E Y+ ++ + E+L +K +
Sbjct: 129 RQTLEK--------------------EAGSQNEGVRLALYFERKAPSLTNAYEILGDKAL 168
Query: 527 LNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFN 577
L + + G D K + +I S + DP + + + +R+ + N
Sbjct: 169 LTMVQTTFGWLSTMSNADIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHEMNN 224
Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 21/228 (9%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
D + + I ++ + + YYK I +V S DF+ D +LF +
Sbjct: 3 DTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNY-AMKA 61
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQ 335
F L A F+ + F F + Q + Q
Sbjct: 62 FGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ 121
Query: 336 KMLDLYKKNCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
++D Y + L ++ + + +L K L + + T
Sbjct: 122 GVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLST 181
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNH 440
+ A ++ + + S SDPD Y +K R ++
Sbjct: 182 MSNA------DIDKQAKMIADKIDFSKMSDPD-YVSKFI-SRFTAMHE 221
>gi|227820851|ref|YP_002824821.1| hypothetical protein NGR_c02700 [Sinorhizobium fredii NGR234]
gi|227339850|gb|ACP24068.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
Length = 301
Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 11/250 (4%)
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
+ + + + + + E +YY I +I S +E A+ R+ ++ +++
Sbjct: 44 TTTYTSYKLITADITGSLERVSEQPVVARETEYYLSRIGSIKSLDEFFADSRLYDYAMKA 103
Query: 534 KGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQ 593
G++ + F+ ++ + +FAN D+RYK ++ S NF HG+ +
Sbjct: 104 HGLEDMAYAKAFMRKVLTEGIDSEDAFANKLADSRYKALVESLNFARHGDTATSF----- 158
Query: 594 DNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKK 653
D Y Q +E+ E++ + LALYF+R P I + YEI+ D L +VV
Sbjct: 159 -ERAQKGVVDKYARQTLEQNAGEENGGVRLALYFERMAPLITSGYEIIADEALAQVVRAA 217
Query: 654 LKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM-----DHQSIDYKKAL 708
L+L FA ++ ++ I + DF+D K+ F+ A+ S D
Sbjct: 218 LQLPEEFAAADVDRQAEAYEEAIDLKDFQDPVKLAAFIDRFTALWEIENSSDSYDPLAVF 277
Query: 709 FSSPNQNKDP 718
SS P
Sbjct: 278 GSSSGYGISP 287
Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Query: 3 PSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
++ + + DI L VS+ P+V+ E YY RI I ++DEF D RL+ YA+KA
Sbjct: 45 TTYTSYKLITADITGSL-ERVSEQPVVARETEYYLSRIGSIKSLDEFFADSRLYDYAMKA 103
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS-DIQHK 120
GL DM++A+ F++K+L + + N+L +Y+ S +F+ S + K
Sbjct: 104 HGLEDMAYAKAFMRKVLTEGIDSEDAFANKLADSRYKALVESLNFARHGDTATSFERAQK 163
Query: 121 TIIQDYK----QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ Y + + +E + + YF + I S ++ D L V + + +
Sbjct: 164 GVVDKYARQTLEQNAGEENGGVRLALYFERMAPLITSGYEIIADEALAQVVRAALQLPEE 223
Query: 177 YISLPFLKDV 186
+ + +
Sbjct: 224 FAAADVDRQA 233
Score = 120 bits (301), Expect = 7e-25, Method: Composition-based stats.
Identities = 41/207 (19%), Positives = 87/207 (42%), Gaps = 11/207 (5%)
Query: 107 SPPPKVIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLL 164
+ P V + +K I D S + ++ V E++Y+ I I S+D+ F D RL
Sbjct: 38 TGRPIVTTTYTSYKLITADITGSLERVSEQPVVARETEYYLSRIGSIKSLDEFFADSRLY 97
Query: 165 DYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKR 224
DY +++ + + F++ VLT G+ + + + D+R++A+ E+ F G +
Sbjct: 98 DYAMKAHGLEDMAYAKAFMRKVLTEGIDSEDAFANKLADSRYKALVESLNFARHGDTATS 157
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSD-----QNYYKLAINSVSSFSDFLKDPKLFKM 279
+ + +V Y T++ + Y++ ++S + + D L ++
Sbjct: 158 F----ERAQKGVVDKYARQTLEQNAGEENGGVRLALYFERMAPLITSGYEIIADEALAQV 213
Query: 280 LQLSLFPLNPEITADKFLTLMQENDPI 306
++ +L AD + I
Sbjct: 214 VRAALQLPEEFAAADVDRQAEAYEEAI 240
Score = 86.5 bits (212), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 33/193 (17%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
+ Y +G IKS+D + +A+ A+ L + +R VL
Sbjct: 74 TEYYLSRIGSIKSLDEFFADSR-------------LYDYAMKAHGLEDMAYAKAFMRKVL 120
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSI 476
T D++ANK D R L + NF G + + + +
Sbjct: 121 TEGIDSEDAFANKLADSRYKALVESLNFARHGDTATSFERAQKGVVDKYARQTLEQNAGE 180
Query: 477 HDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGI 536
+ Y+ I S E++A++ + + + +
Sbjct: 181 ENGG--------------------VRLALYFERMAPLITSGYEIIADEALAQVVRAALQL 220
Query: 537 DSQKVREDFLCEI 549
+ D +
Sbjct: 221 PEEFAAADVDRQA 233
Score = 45.2 bits (105), Expect = 0.045, Method: Composition-based stats.
Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 23/233 (9%)
Query: 219 GSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFK 278
G + I ++ + + + YY I S+ S +F D +L+
Sbjct: 39 GRPIVTTTYTSYKLITADITGSLERVSEQPVVARETEYYLSRIGSIKSLDEFFADSRLYD 98
Query: 279 MLQLSLFPLNPEITADKFLTLMQEN-------------DPIVSQVKYFFQINFHRDNSSS 325
+ L A F+ + D + H D ++S
Sbjct: 99 Y-AMKAHGLEDMAYAKAFMRKVLTEGIDSEDAFANKLADSRYKALVESLNFARHGDTATS 157
Query: 326 TKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNS 385
+ Q + K + + ++ L ++ I S +++ + + +
Sbjct: 158 FERAQKGVVDKYARQTLEQNAGEENGGVR-LALYFERMAPLITSGYEIIADEALAQVVRA 216
Query: 386 AEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKL 438
A + A ++ + + DP A DR L
Sbjct: 217 ALQLPEEFAAA------DVDRQAEAYEEAIDLKDFQDPVKLAAFI--DRFTAL 261
>gi|161620213|ref|YP_001594099.1| hypothetical protein BCAN_B0131 [Brucella canis ATCC 23365]
gi|254702555|ref|ZP_05164383.1| hypothetical protein Bsuib36_01112 [Brucella suis bv. 3 str. 686]
gi|261753133|ref|ZP_05996842.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|161337024|gb|ABX63328.1| protein of unknown function DUF1217 [Brucella canis ATCC 23365]
gi|261742886|gb|EEY30812.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
Length = 262
Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 6/214 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
++M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 13 SNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I + D + AN D RYKE + F+F G + Q D
Sbjct: 73 FVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT------QSTAAQQGVIDK 126
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +EK+ ++ + LALYF+R P++ N YEILGD L +V +
Sbjct: 127 YVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMSNAD 186
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
K+ +++ I + D V F+ AM
Sbjct: 187 IDKQAKMIADKIDFSKMSDPDYVLKFISRFTAMH 220
Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + ++ VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+K
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQH 119
AFGL DM++A+ F++KIL ++D ++ N+L +Y+ FA +DF + QS
Sbjct: 61 AFGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQ 120
Query: 120 KTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ +I Y + KE + + YF + + + ++ D+ LL V +F
Sbjct: 121 QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLS 180
Query: 176 KYISLPFLKDV 186
+ K
Sbjct: 181 TMSNADIDKQA 191
Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI + SVD D RL +Y +++F + + F++ +LT
Sbjct: 20 QRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFVRKILT 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + + ++ Y T++
Sbjct: 80 EGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT----QSTAAQQGVIDKYVRQTLEKE 135
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ S+++ + L D L M+Q + L+ AD
Sbjct: 136 AGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMSNAD 186
Score = 93.0 bits (229), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/219 (16%), Positives = 74/219 (33%), Gaps = 40/219 (18%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ Y+ +G +KS+D+ ++ +A+ A+ L
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTR-------------LFNYAMKAFGLEDMA 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R +LT +D D+ ANK D R + F+F G+ + I V
Sbjct: 69 YAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYV 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + E Y+ ++ + E+L +K +
Sbjct: 129 RQTLEK--------------------EAGSQNEGVRLALYFERKAPSLTNAYEILGDKAL 168
Query: 527 LNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPK 558
L + + G D K + +I S + DP
Sbjct: 169 LTMVQTTFGWLSTMSNADIDKQAKMIADKIDFSKMSDPD 207
Score = 53.3 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 63/213 (29%), Gaps = 19/213 (8%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
D + + I ++ + + YYK I +V S DF+ D +LF +
Sbjct: 3 DTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNY-AMKA 61
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQ 335
F L A F+ + F F + Q + Q
Sbjct: 62 FGLEDMAYAKAFVRKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ 121
Query: 336 KMLDLYKKNCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
++D Y + L ++ + + +L K L + + T
Sbjct: 122 GVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLST 181
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDS 425
+ A ++ + + S SDPD
Sbjct: 182 MSNA------DIDKQAKMIADKIDFSKMSDPDY 208
>gi|153011531|ref|YP_001372745.1| hypothetical protein Oant_4216 [Ochrobactrum anthropi ATCC 49188]
gi|151563419|gb|ABS16916.1| protein of unknown function DUF1217 [Ochrobactrum anthropi ATCC
49188]
Length = 264
Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 6/213 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 15 SDMARSLQRVSKEPMVERETAYYKENIGKVKSIDDFMADSRLYNYAMKAFGLEDMAFAKA 74
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ +I + + AN D RYKE + F+F G + + Q D
Sbjct: 75 FVRKILTEGITSDDAMANKLTDKRYKEFATVFDFAGKGAEATESTAAQQ------GVVDK 128
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +E + ++ + LALYF R P I N YEILGD L ++ +
Sbjct: 129 YLRQTLETEAGSQNEGVRLALYFARKAPTITNAYEILGDKALVSMIQTTFGWPSSISNAD 188
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
K+ ++++ I D V + AM
Sbjct: 189 VDKQAKMIEDKIDFTKMSDPDYVSKLISRFTAM 221
Score = 174 bits (441), Expect = 4e-41, Method: Composition-based stats.
Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + ++ VSK+P+V E YY+E I + +ID+F+ D RL++YA+K
Sbjct: 3 MVDTMTSYRLIASDMARSLQRVSKEPMVERETAYYKENIGKVKSIDDFMADSRLYNYAMK 62
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQH 119
AFGL DM+ A+ F++KIL ++ ++ N+L +Y+ FA +DF + +S
Sbjct: 63 AFGLEDMAFAKAFVRKILTEGITSDDAMANKLTDKRYKEFATVFDFAGKGAEATESTAAQ 122
Query: 120 KTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ ++ Y + E + + YF + I + ++ D+ L+ + +F
Sbjct: 123 QGVVDKYLRQTLETEAGSQNEGVRLALYFARKAPTITNAYEILGDKALVSMIQTTFGWPS 182
Query: 176 KYISLPFLKDV 186
+ K
Sbjct: 183 SISNADVDKQA 193
Score = 128 bits (320), Expect = 5e-27, Method: Composition-based stats.
Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI K+ S+D D RL +Y +++F + + F++ +LT
Sbjct: 22 QRVSKEPMVERETAYYKENIGKVKSIDDFMADSRLYNYAMKAFGLEDMAFAKAFVRKILT 81
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + +V Y T++
Sbjct: 82 EGITSDDAMANKLTDKRYKEFATVFDFAGKGAEATESTAA----QQGVVDKYLRQTLETE 137
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y+ ++++ + L D L M+Q + + AD
Sbjct: 138 AGSQNEGVRLALYFARKAPTITNAYEILGDKALVSMIQTTFGWPSSISNAD 188
Score = 94.9 bits (234), Expect = 5e-17, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 33/213 (15%)
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFA 396
D+ + ++ + ++ Y+ +GK+KSID+ ++ +A
Sbjct: 14 ASDMARSLQRVSKEPMVERETAYYKENIGKVKSIDDFMADSR-------------LYNYA 60
Query: 397 LDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM 456
+ A+ L + +R +LT + D+ ANK D R + F+F G+
Sbjct: 61 MKAFGLEDMAFAKAFVRKILTEGITSDDAMANKLTDKRYKEFATVFDFAGKGAEATESTA 120
Query: 457 QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
+ + ++ T+ E Y+ TI +
Sbjct: 121 AQQGVVDKYLRQTLE--------------------TEAGSQNEGVRLALYFARKAPTITN 160
Query: 517 FEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
E+L +K +++ + + G S D +
Sbjct: 161 AYEILGDKALVSMIQTTFGWPSSISNADVDKQA 193
Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 21/226 (9%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
D + + I ++ + + YYK I V S DF+ D +L+ +
Sbjct: 5 DTMTSYRLIASDMARSLQRVSKEPMVERETAYYKENIGKVKSIDDFMADSRLYNY-AMKA 63
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQ 335
F L A F+ + F F + + + Q
Sbjct: 64 FGLEDMAFAKAFVRKILTEGITSDDAMANKLTDKRYKEFATVFDFAGKGAEATESTAAQQ 123
Query: 336 KMLDLYKKNCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
++D Y + L + I + +L K + + +
Sbjct: 124 GVVDKYLRQTLETEAGSQNEGVRLALYFARKAPTITNAYEILGDKALVSMIQTTFGWPSS 183
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKL 438
+ A ++ + + + SDPD Y +K R +
Sbjct: 184 ISNA------DVDKQAKMIEDKIDFTKMSDPD-YVSKLI-SRFTAM 221
>gi|12214188|emb|CAC21603.1| unnamed protein product [Sinorhizobium meliloti]
Length = 315
Score = 232 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 11/250 (4%)
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
+ + + + + + ++ E +YY I +I + ++ A+ R+ N+ +++
Sbjct: 58 TTTYTSYRLITADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKA 117
Query: 534 KGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQ 593
G++ + F+ ++ + +FAN D RYK ++ S NF HGE +
Sbjct: 118 HGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAF----- 172
Query: 594 DNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKK 653
+ Y Q +E+K E++ + LALYF+R P I N YEI+ D L VV
Sbjct: 173 -ERAQKGVAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSHVVRTV 231
Query: 654 LKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM-----DHQSIDYKKAL 708
L+L FA ++ + I DF+D +K+ +FL A+ D
Sbjct: 232 LQLPAEFAAADVDRQAEAYEAAIDFKDFQDPQKIAEFLDRFTALWEIDNSSDGYDPLAVF 291
Query: 709 FSSPNQNKDP 718
+S P
Sbjct: 292 GASSGYGISP 301
Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats.
Identities = 40/189 (21%), Positives = 84/189 (44%), Gaps = 5/189 (2%)
Query: 3 PSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAF 62
++ + +K VS P V+ E YY +I I T+D+F D RL++YA+KA
Sbjct: 59 TTYTSYRLITADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKAH 118
Query: 63 GLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTI 122
GL DM++A+ F++K+L + + N+L +Y+ S +F+ + + + +
Sbjct: 119 GLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFERAQKG 178
Query: 123 I-----QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKY 177
+ + + +E + + YF++ I + ++ D L V + ++
Sbjct: 179 VAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSHVVRTVLQLPAEF 238
Query: 178 ISLPFLKDV 186
+ +
Sbjct: 239 AAADVDRQA 247
Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/270 (17%), Positives = 100/270 (37%), Gaps = 33/270 (12%)
Query: 85 PKSLVNQLNSLKYQYFARS----------YDFSPPPKVIQSDIQHKTIIQDYKQSHQH-- 132
P S N++ + + AR+ + + P V + ++ I D +S +
Sbjct: 23 PGSDRNRV---RSRQLARAEDRAHISSSRFIATGEPIVTTTYTSYRLITADLTKSLERVS 79
Query: 133 KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLA 192
+ E++Y+ I I ++D F D RL +Y +++ + + F++ VL G+
Sbjct: 80 AQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKAHGLEDMAYAKAFMRKVLAEGID 139
Query: 193 NPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI-DCVPIV 251
+ + + D R++A+ E+ F G + + EK + V
Sbjct: 140 SDDAFANKLADGRYKALVESLNFARHGEAATAFERAQKGVAEKYTRQTLEQKAGEENTGV 199
Query: 252 SDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVK 311
Y++ ++++ + + D L +++ + L E A D
Sbjct: 200 RLALYFQRMAPTIANGYEIIADEALSHVVRT-VLQLPAEFAAA---------DVDRQAEA 249
Query: 312 YFFQINFHRDNSSSTKIQQDSQIQKMLDLY 341
Y I+F Q +I + LD +
Sbjct: 250 YEAAIDFKD-------FQDPQKIAEFLDRF 272
Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/209 (14%), Positives = 67/209 (32%), Gaps = 17/209 (8%)
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFA 396
DL K ++ + + Y +G IK++D+ + +A
Sbjct: 68 TADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSR-------------LYNYA 114
Query: 397 LDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM 456
+ A+ L + +R VL D++ANK D R L + NF G
Sbjct: 115 MKAHGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFER 174
Query: 457 QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
+ + +K E + + + + E+ + + +
Sbjct: 175 AQKGVAEKYTRQTLEQKA----GEENTGVRLALYFQRMAPTIANGYEIIADEALSHVVRT 230
Query: 517 FEELLANKRILNFLLESKGIDSQKVREDF 545
+L A + +++ ++ +DF
Sbjct: 231 VLQLPAEFAAADVDRQAEAYEAAIDFKDF 259
>gi|163758008|ref|ZP_02165096.1| hypothetical protein HPDFL43_00245 [Hoeflea phototrophica DFL-43]
gi|162284297|gb|EDQ34580.1| hypothetical protein HPDFL43_00245 [Hoeflea phototrophica DFL-43]
Length = 260
Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats.
Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 6/223 (2%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S + + + + + ++ E + Y I+ I S +E +A+ R+ N+ +++
Sbjct: 3 STYTSYRLIAQDIPKSIERIASQPQVARESENYLSRISEIKSIDEFMADTRVFNYAMKAH 62
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + F+ ++ D +FAN D RY++ +FNF HGE + Q
Sbjct: 63 GLEDMSYAKAFMRKVLTEGTDDDNAFANQLADTRYRDFAEAFNFARHGETATIFTSAQQ- 121
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
T D Y +E++ + + LALYF+R P + + YEIL D+ L VV L
Sbjct: 122 -----GTVDKYHRLTLEEEAGADNTGVRLALYFERNAPELTSAYEILADNALADVVRTAL 176
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
L A K+ ++ I + DFKD +K++ FL A+
Sbjct: 177 GLPSELAATDIDKQADLINSRIDLEDFKDPEKLDKFLNRFTAL 219
Score = 173 bits (438), Expect = 9e-41, Method: Composition-based stats.
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + K ++ P V+ E Y RI I +IDEF+ D R+F+YA+K
Sbjct: 1 MISTYTSYRLIAQDIPKSIERIASQPQVARESENYLSRISEIKSIDEFMADTRVFNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQ--SDIQ 118
A GL DMS+A+ F++K+L D + NQL +Y+ FA +++F+ + + Q
Sbjct: 61 AHGLEDMSYAKAFMRKVLTEGTDDDNAFANQLADTRYRDFAEAFNFARHGETATIFTSAQ 120
Query: 119 HKTIIQDYK---QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
T+ + ++ + + + + YF +N ++ S ++ D L D V + +
Sbjct: 121 QGTVDKYHRLTLEEEAGADNTGVRLALYFERNAPELTSAYEILADNALADVVRTALGLPS 180
Query: 176 KYISLPFLKDV 186
+ + K
Sbjct: 181 ELAATDIDKQA 191
Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 11/199 (5%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
I + ++ I QD +S + + ES+ + I +I S+D+ D R+ +Y +++
Sbjct: 2 ISTYTSYRLIAQDIPKSIERIASQPQVARESENYLSRISEIKSIDEFMADTRVFNYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + F++ VLT G + + + D R+R AE F F G + I T
Sbjct: 62 HGLEDMSYAKAFMRKVLTEGTDDDNAFANQLADTRYRDFAEAFNFARHGETAT---IFTS 118
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
Q + V Y T++ + Y++ ++S + L D L +++ +L
Sbjct: 119 AQ-QGTVDKYHRLTLEEEAGADNTGVRLALYFERNAPELTSAYEILADNALADVVRTALG 177
Query: 286 PLNPEITADKFLTLMQEND 304
+ D N
Sbjct: 178 LPSELAATDIDKQADLINS 196
Score = 95.3 bits (235), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/203 (17%), Positives = 68/203 (33%), Gaps = 33/203 (16%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
I ++ ++Y + +IKSID ++ +A+ A+ L
Sbjct: 22 IASQPQVARESENYLSRISEIKSIDEFMADTR-------------VFNYAMKAHGLEDMS 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R VLT D +++AN+ D R AFNF G I + T+
Sbjct: 69 YAKAFMRKVLTEGTDDDNAFANQLADTRYRDFAEAFNFARHGETATIFTSAQQGTVDKYH 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + Y+ N + S E+LA+ +
Sbjct: 129 RLTLEEEAGADN--------------------TGVRLALYFERNAPELTSAYEILADNAL 168
Query: 527 LNFLLESKGIDSQKVREDFLCEI 549
+ + + G+ S+ D +
Sbjct: 169 ADVVRTALGLPSELAATDIDKQA 191
>gi|218461856|ref|ZP_03501947.1| hypothetical protein RetlK5_21288 [Rhizobium etli Kim 5]
Length = 256
Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats.
Identities = 82/236 (34%), Positives = 138/236 (58%), Gaps = 2/236 (0%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + +A + + V+ V + +YY + I ++++D+F+ D +L+SYA+K
Sbjct: 23 MITASLAYSILSKDMTSSLNKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAMK 82
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 83 AYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDARYREFAAAFNFNAPEKDVQTDAQED 142
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+I YKQS ++ + ES Y+ NI + +VD L + RL YVL++F I P Y S
Sbjct: 143 ELIGLYKQSFVDADKASAAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYASK 202
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKI 236
FL+ VLT L++P ++++A+A F F DG+++ T Q +
Sbjct: 203 DFLRQVLTSDLSDPASVVNTQGGDKYKALAAQFSFNADGTVT--GTAQTAAQKASV 256
Score = 150 bits (379), Expect = 6e-34, Method: Composition-based stats.
Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 38/252 (15%)
Query: 345 CQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNM 404
++ ++ + Y + K+ S+D+ L +A+ AY L
Sbjct: 42 NKVASQATVKKDAQYYADHINKVTSVDDFLGD-------------YKLYSYAMKAYGLED 88
Query: 405 QDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRD 464
+ ++ VL S+ +DP+SYANK D R + AFNFNA P +Q+ +
Sbjct: 89 MTYAKAFMKKVLESDLTDPNSYANKLSDARYREFAAAFNFNA-----PEKDVQTDAQEDE 143
Query: 465 NVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANK 524
+ Y K+S DA+ S +E YY+ NI+++ + ++L+ N
Sbjct: 144 LIGLY---KQSFVDADKAS-----------------AAESTYYSNNIDSVQTVDDLVNNT 183
Query: 525 RILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGEL 584
R+ ++L++ ID +DFL ++ SDL DP S NT ++YK + + F+F+ G +
Sbjct: 184 RLRTYVLKTFKIDPTYASKDFLRQVLTSDLSDPASVVNTQGGDKYKALAAQFSFNADGTV 243
Query: 585 SHKKIGKVQDNF 596
+ Q
Sbjct: 244 TGTAQTAAQKAS 255
Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 106/248 (42%), Gaps = 27/248 (10%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
+ A + M + + + YY +IN + S ++ L + ++ ++ +++
Sbjct: 25 TASLAYSILSKDMTSSLNKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAMKAY 84
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + F+ ++ +SDL DP S+AN D RY+E ++FNF+ VQ
Sbjct: 85 GLEDMTYAKAFMKKVLESDLTDPNSYANKLSDARYREFAAAFNFNA-------PEKDVQT 137
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
+ D+ LYK ++ + + A + Y+ I +++ +++ +++L V K
Sbjct: 138 DAQEDELIGLYKQSFVDADK----ASAAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTF 193
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQ 714
K+ P +A +++ +D D V ++ Q D KAL + +
Sbjct: 194 KIDPTYASKDFLRQVLT-------SDLSDPASV---------VNTQGGDKYKALAAQFSF 237
Query: 715 NKDPWNNS 722
N D
Sbjct: 238 NADGTVTG 245
Score = 121 bits (302), Expect = 5e-25, Method: Composition-based stats.
Identities = 41/220 (18%), Positives = 89/220 (40%), Gaps = 16/220 (7%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
+ + ++++Y+ +I+K+ SVD D +L Y ++++ + + F+K VL
Sbjct: 42 NKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAMKAYGLEDMTYAKAFMKKVLE 101
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
L +P Y + D R+R A F F + TD Q ++++ Y + +D
Sbjct: 102 SDLTDPNSYANKLSDARYREFAAAFNFNAP-----EKDVQTDAQEDELIGLYKQSFVDAD 156
Query: 249 PI-VSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIV 307
++ YY I+SV + D + + +L + + + D ++ +
Sbjct: 157 KASAAESTYYSNNIDSVQTVDDLVNNTRLRTYVLKTFKIDPTYASKDFLRQVLTSDLSDP 216
Query: 308 SQV----------KYFFQINFHRDNSSSTKIQQDSQIQKM 337
+ V Q +F+ D + + Q +Q +
Sbjct: 217 ASVVNTQGGDKYKALAAQFSFNADGTVTGTAQTAAQKASV 256
Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/265 (21%), Positives = 102/265 (38%), Gaps = 25/265 (9%)
Query: 206 FRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVS 265
+R +L L + K +++ N + D YY IN V+
Sbjct: 6 YRQFVVLLEIFAKRALLMITASLAYSILSKDMTSSLNKVASQATVKKDAQYYADHINKVT 65
Query: 266 SFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPI---------VSQVKYFFQI 316
S DFL D KL+ + + L A F+ + E+D F
Sbjct: 66 SVDDFLGDYKLYSY-AMKAYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDARYREFAA 124
Query: 317 NFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSG 376
F+ N+ +Q D+Q +++ LYK++ + D + Y + ++++D+L++
Sbjct: 125 AFNF-NAPEKDVQTDAQEDELIGLYKQSF-VDADKASAAESTYYSNNIDSVQTVDDLVNN 182
Query: 377 KCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLI 436
+ L + ++ +D LR VLTS+ SDP S N D+
Sbjct: 183 TR-------------LRTYVLKTFKIDPTYASKDFLRQVLTSDLSDPASVVNTQGGDKYK 229
Query: 437 KLNHAFNFNADGSIGPIPMMQSRLT 461
L F+FNADG++ ++
Sbjct: 230 ALAAQFSFNADGTVTGTAQTAAQKA 254
>gi|260568537|ref|ZP_05839006.1| flagellar basal-body rod protein FlgF [Brucella suis bv. 4 str. 40]
gi|260155202|gb|EEW90283.1| flagellar basal-body rod protein FlgF [Brucella suis bv. 4 str. 40]
Length = 262
Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 6/214 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
++M + + + E YY NI + S ++ +A+ R+ N+ +++ G++ +
Sbjct: 13 SNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F +I + D + AN D RYKE + F+F G + Q D
Sbjct: 73 FARKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT------QSTAAQQGVIDK 126
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +EK+ ++ + LALYF+R P++ N YEILGD L +V +
Sbjct: 127 YVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMSNAD 186
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
K+ +++ I + D V F+ AM
Sbjct: 187 IDKQAKMIADKIDFSKMSDPDYVLKFISRFTAMH 220
Score = 177 bits (448), Expect = 6e-42, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + ++ VSK+P+V E YY+E I ++ ++D+F+ D RLF+YA+K
Sbjct: 1 MVDTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQH 119
AFGL DM++A+ F +KIL ++D ++ N+L +Y+ FA +DF + QS
Sbjct: 61 AFGLEDMAYAKAFARKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQ 120
Query: 120 KTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ +I Y + KE + + YF + + + ++ D+ LL V +F
Sbjct: 121 QGVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLS 180
Query: 176 KYISLPFLKDV 186
+ K
Sbjct: 181 TMSNADIDKQA 191
Score = 131 bits (328), Expect = 5e-28, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
KE + E+ Y+++NI + SVD D RL +Y +++F + + F + +LT
Sbjct: 20 QRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNYAMKAFGLEDMAYAKAFARKILT 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G+ + + D R++ A F F G+ + + + ++ Y T++
Sbjct: 80 EGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQAT----QSTAAQQGVIDKYVRQTLEKE 135
Query: 249 PIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ Y++ S+++ + L D L M+Q + L+ AD
Sbjct: 136 AGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLSTMSNAD 186
Score = 91.1 bits (224), Expect = 6e-16, Method: Composition-based stats.
Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 40/219 (18%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ Y+ +G +KS+D+ ++ +A+ A+ L
Sbjct: 22 VSKEPLVERETAYYKENIGNVKSVDDFMADTR-------------LFNYAMKAFGLEDMA 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ R +LT +D D+ ANK D R + F+F G+ + I V
Sbjct: 69 YAKAFARKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQGVIDKYV 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + + E Y+ ++ + E+L +K +
Sbjct: 129 RQTLEK--------------------EAGSQNEGVRLALYFERKAPSLTNAYEILGDKAL 168
Query: 527 LNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPK 558
L + + G D K + +I S + DP
Sbjct: 169 LTMVQTTFGWLSTMSNADIDKQAKMIADKIDFSKMSDPD 207
Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 19/213 (8%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
D + + I ++ + + YYK I +V S DF+ D +LF +
Sbjct: 3 DTMTSYRLIASNMTRSLQRVSKEPLVERETAYYKENIGNVKSVDDFMADTRLFNY-AMKA 61
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQ 335
F L A F + F F + Q + Q
Sbjct: 62 FGLEDMAYAKAFARKILTEGVTDEDAMANKLTDKRYKEFATVFDFAGKGAQATQSTAAQQ 121
Query: 336 KMLDLYKKNCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
++D Y + L ++ + + +L K L + + T
Sbjct: 122 GVIDKYVRQTLEKEAGSQNEGVRLALYFERKAPSLTNAYEILGDKALLTMVQTTFGWLST 181
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDS 425
+ A ++ + + S SDPD
Sbjct: 182 MSNA------DIDKQAKMIADKIDFSKMSDPDY 208
>gi|328545468|ref|YP_004305577.1| flagellar basal-body rod protein flgf [polymorphum gilvum
SL003B-26A1]
gi|326415209|gb|ADZ72272.1| Flagellar basal-body rod protein flgf [Polymorphum gilvum
SL003B-26A1]
Length = 261
Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats.
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 6/213 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+M + + E +YY NI S ++ L + R+ + +++ G+ +
Sbjct: 13 TNMTRSLDTVASEPTVRRESEYYLANIGKAKSIDDFLGDDRLFKYAMKAFGLQDMDYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ + D SFAN D+RY++ +FNF +G+ + Q D
Sbjct: 73 FMRKVLEEGTDDRNSFANKLADDRYRQFAETFNFTRYGDAATAFTRAQQ------GVVDA 126
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +E + E + + LALYF R I + Y+IL D L +VV L L FA+
Sbjct: 127 YVRQSLEIQNGESNEGVRLALYFSRKAETIDSAYDILADRALAQVVYAALGLPDEFAMAD 186
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
K+ ++K + + DFKD + VE FL M
Sbjct: 187 VDKQAAFIEKRLDLEDFKDPQAVEAFLKRFTTM 219
Score = 175 bits (442), Expect = 4e-41, Method: Composition-based stats.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + + ++ TV+ +P V E YY I +ID+F+ D RLF YA+K
Sbjct: 1 MISTLLQYQMVSTNMTRSLDTVASEPTVRRESEYYLANIGKAKSIDDFLGDDRLFKYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
AFGL DM +A+ F++K+LE D S N+L +Y+ FA +++F+ + + +
Sbjct: 61 AFGLQDMDYAKAFMRKVLEEGTDDRNSFANKLADDRYRQFAETFNFTRYGDAATAFTRAQ 120
Query: 121 TIIQDYK-----QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ D + + + + YF + I+S + DR L V + +
Sbjct: 121 QGVVDAYVRQSLEIQNGESNEGVRLALYFSRKAETIDSAYDILADRALAQVVYAALGLPD 180
Query: 176 KYISLPFLKDV 186
++ K
Sbjct: 181 EFAMADVDKQA 191
Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 11/189 (5%)
Query: 113 IQSDIQHKTIIQDYKQ--SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
I + +Q++ + + + E ES+Y+ NI K S+D D RL Y +++
Sbjct: 2 ISTLLQYQMVSTNMTRSLDTVASEPTVRRESEYYLANIGKAKSIDDFLGDDRLFKYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
F + + F++ VL G + + + D+R+R AE F F G T
Sbjct: 62 FGLQDMDYAKAFMRKVLEEGTDDRNSFANKLADDRYRQFAETFNFTRYG---DAATAFTR 118
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
Q + +V Y +++ S++ Y+ ++ S D L D L +++ +L
Sbjct: 119 AQ-QGVVDAYVRQSLEIQNGESNEGVRLALYFSRKAETIDSAYDILADRALAQVVYAALG 177
Query: 286 PLNPEITAD 294
+ AD
Sbjct: 178 LPDEFAMAD 186
Score = 97.6 bits (241), Expect = 7e-18, Method: Composition-based stats.
Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 40/220 (18%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + ++ + Y +GK KSID+ L ++A+ A+ L D
Sbjct: 22 VASEPTVRRESEYYLANIGKAKSIDDFLGDDR-------------LFKYAMKAFGLQDMD 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R VL D +S+ANK DDR + FNF G + + V
Sbjct: 69 YAKAFMRKVLEEGTDDRNSFANKLADDRYRQFAETFNFTRYGDAATAFTRAQQGVVDAYV 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ + Q + E Y++ TI S ++LA++ +
Sbjct: 129 RQ--------------------SLEIQNGESNEGVRLALYFSRKAETIDSAYDILADRAL 168
Query: 527 LNFLLESKGIDSQ------KVREDFLCEIF-KSDLKDPKS 559
+ + G+ + + F+ + D KDP++
Sbjct: 169 AQVVYAALGLPDEFAMADVDKQAAFIEKRLDLEDFKDPQA 208
Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 25/214 (11%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ ++ + + + YY I S DFL D +LFK + F L
Sbjct: 11 VSTNMTRSLDTVASEPTVRRESEYYLANIGKAKSIDDFLGDDRLFKY-AMKAFGLQDMDY 69
Query: 293 ADKFLTLMQEN-------------DPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLD 339
A F+ + E D Q + NF R ++T +Q +
Sbjct: 70 AKAFMRKVLEEGTDDRNSFANKLADDRYRQ--FAETFNFTRYGDAATAF-TRAQQGVVDA 126
Query: 340 LYKKNCQILHDDKMQS--LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFAL 397
+++ +I + + + L + I S ++L+ + + +A A
Sbjct: 127 YVRQSLEIQNGESNEGVRLALYFSRKAETIDSAYDILADRALAQVVYAALGLPDEFAMA- 185
Query: 398 DAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSK 431
++ + + + DP + K
Sbjct: 186 -----DVDKQAAFIEKRLDLEDFKDPQAVEAFLK 214
>gi|126730141|ref|ZP_01745953.1| flagellar protein, putative [Sagittula stellata E-37]
gi|126709521|gb|EBA08575.1| flagellar protein, putative [Sagittula stellata E-37]
Length = 397
Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats.
Identities = 69/354 (19%), Positives = 138/354 (38%), Gaps = 31/354 (8%)
Query: 342 KKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYN 401
K+ + + ++ +G + S D+L++ + L AL A+
Sbjct: 19 KQRTAFNASAYLARDTEYFKEKIGGVTSGDDLVNDRR-------------LLSVALAAFG 65
Query: 402 LNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLT 461
L+ Q ++ VL + D+ ANK KD R + L AF+F + +
Sbjct: 66 LSDQIDSAYLIKRVLNEGAENDDALANKLKDGRYVALARAFSFEETTNFPFQEEGFAGDI 125
Query: 462 IRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELL 521
+ K + + + + N + + + + + + Y+ I ++ S ++L+
Sbjct: 126 LASYDKRIRSDLADLLEEPEYANNPIAAETLEATVLDGLETTKTYFRETIGSVTSVDDLM 185
Query: 522 ANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIH 581
+ +L L + G++ + + L +F+ +P + AN D + +F FD
Sbjct: 186 KDNDLLKVALTAFGVEERTNSKTLLKRVFEEGATNPGALANVLGDKGLIAMTKAFGFD-- 243
Query: 582 GELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNI------- 634
+ ++ D D Y+ Q E E +P I AL F+R P +
Sbjct: 244 ----TEPTTAIRTEEFADKIIDNYQWQAFEDAVNEVNPTIGTALSFQRGAPALAGLSGSE 299
Query: 635 -RNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKK----HIKINDFKD 683
+ +LGDS + +V L L F+ + K++ ++K+ I FKD
Sbjct: 300 NTKWFNVLGDSTMREVFQTALGLPSSFSQIDIDKQVEMMKEKAASRFGITQFKD 353
Score = 187 bits (475), Expect = 5e-45, Method: Composition-based stats.
Identities = 79/351 (22%), Positives = 140/351 (39%), Gaps = 38/351 (10%)
Query: 1 MIPSH--VAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYA 58
MIP + + SK + + ++ + Y++E+I +++ D+ + D+RL S A
Sbjct: 1 MIPGSGLIGWQVLQTTMSKQRTAFNASAYLARDTEYFKEKIGGVTSGDDLVNDRRLLSVA 60
Query: 59 LKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPK-VIQSDI 117
L AFGLSD + IK++L + +L N+L +Y AR++ F Q +
Sbjct: 61 LAAFGLSDQIDSAYLIKRVLNEGAENDDALANKLKDGRYVALARAFSFEETTNFPFQEEG 120
Query: 118 QHKTIIQDYKQSHQHKEEVALEE------------------------SKYFRKNIHKINS 153
I+ Y + + LEE YFR+ I + S
Sbjct: 121 FAGDILASYDKRIRSDLADLLEEPEYANNPIAAETLEATVLDGLETTKTYFRETIGSVTS 180
Query: 154 VDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENF 213
VD L KD LL L +F + + S LK V G NP D AM + F
Sbjct: 181 VDDLMKDNDLLKVALTAFGVEERTNSKTLLKRVFEEGATNPGALANVLGDKGLIAMTKAF 240
Query: 214 RFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV-PIVSDQNYYKLAINSV-------- 264
F + + + R + D I+ F + ++ V P + ++ ++
Sbjct: 241 GFDTEPTTAIRTEEFADKIIDNYQWQAFEDAVNEVNPTIGTALSFQRGAPALAGLSGSEN 300
Query: 265 SSFSDFLKDPKLFKMLQLSLFPLN--PEITADKFLTLMQENDPIVSQVKYF 313
+ + + L D + ++ Q +L + +I DK + +M+E + F
Sbjct: 301 TKWFNVLGDSTMREVFQTALGLPSSFSQIDIDKQVEMMKEKAASRFGITQF 351
Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 79/205 (38%), Gaps = 26/205 (12%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+M + T + + + +Y+ I + S ++L+ ++R+L+ L + G+ Q
Sbjct: 15 TTMSKQRTAFNASAYLARDTEYFKEKIGGVTSGDDLVNDRRLLSVALAAFGLSDQIDSAY 74
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
+ + ++ + AN KD RY + +F+F+ Q+ D
Sbjct: 75 LIKRVLNEGAENDDALANKLKDGRYVALARAFSFEE------TTNFPFQEEGFAGDILAS 128
Query: 605 YKHQ-------MIEKKEEEKDPNIALAL-------------YFKRTIPNIRNHYEILGDS 644
Y + ++E+ E +P A L YF+ TI ++ + +++ D+
Sbjct: 129 YDKRIRSDLADLLEEPEYANNPIAAETLEATVLDGLETTKTYFRETIGSVTSVDDLMKDN 188
Query: 645 KLFKVVSKKLKLSPYFAVLPERKKI 669
L KV + K++
Sbjct: 189 DLLKVALTAFGVEERTNSKTLLKRV 213
Score = 92.2 bits (227), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 95/274 (34%), Gaps = 49/274 (17%)
Query: 232 QIEKIVSNYFNNTIDCVP-IVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPE 290
Q+ + + + + D Y+K I V+S D + D +L + + +
Sbjct: 11 QVLQTTMSKQRTAFNASAYLARDTEYFKEKIGGVTSGDDLVNDRRLLSVALAAFGLSDQI 70
Query: 291 ITA---DKFLTLMQENDP----------IVSQVKYF-----FQINFHRDNSSSTKIQQ-- 330
+A + L END V+ + F F + + +
Sbjct: 71 DSAYLIKRVLNEGAENDDALANKLKDGRYVALARAFSFEETTNFPFQEEGFAGDILASYD 130
Query: 331 ---DSQIQKMLDLYKKNCQILHDDKMQSLI--------KDYQLPLGKIKSIDNLLSGKCQ 379
S + +L+ + + + +++ + ++ +G + S+D+L+
Sbjct: 131 KRIRSDLADLLEEPEYANNPIAAETLEATVLDGLETTKTYFRETIGSVTSVDDLMKDN-- 188
Query: 380 LEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLN 439
L+ AL A+ + + + L+ V ++P + AN D LI +
Sbjct: 189 -----------DLLKVALTAFGVEERTNSKTLLKRVFEEGATNPGALANVLGDKGLIAMT 237
Query: 440 HAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRK 473
AF F+ + P +++ + +Y +
Sbjct: 238 KAFGFDTE----PTTAIRTEEFADKIIDNYQWQA 267
>gi|118589944|ref|ZP_01547348.1| flagellar basal-body rod protein flgf [Stappia aggregata IAM 12614]
gi|118437441|gb|EAV44078.1| flagellar basal-body rod protein flgf [Stappia aggregata IAM 12614]
Length = 262
Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 6/224 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ME+ + + + +YY NI I + +E L + RI N+ + + G++ +
Sbjct: 13 TNMERSLKTVAADPMVERQTEYYRENIRDIKTIDEFLGDDRIFNYAMTAMGLEDMIYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ + D +FAN D +YK +FNF +GE + + Q +
Sbjct: 73 FIRKVLEEGTDDRGAFANQLADTKYKNFAETFNFKRYGE-TTTSFARTQ-----EAIVQK 126
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +E +E E++ + LALYF+R P+I N Y++L D L + V L L FA+
Sbjct: 127 YHRQTLEVREGEQNQGVRLALYFERRAPDITNAYDVLADRALAEAVYTSLGLPQEFAMTD 186
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKAL 708
K+ L++ + + F D+ + FL A+ S ++
Sbjct: 187 IDKQAAYLEERLDFSKFGDADYLAKFLNRFSALYDLSNGPTGSM 230
Score = 174 bits (441), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 108/240 (45%), Gaps = 11/240 (4%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + + + TV+ DP+V + YYRE I+ I TIDEF+ D R+F+YA+
Sbjct: 1 MINTLSQVQLVRTNMERSLKTVAADPMVERQTEYYRENIRDIKTIDEFLGDDRIFNYAMT 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A GL DM +A+ FI+K+LE D + NQL KY+ FA +++F + S + +
Sbjct: 61 AMGLEDMIYAKAFIRKVLEEGTDDRGAFANQLADTKYKNFAETFNFKRYGETTTSFARTQ 120
Query: 121 TII-----QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
I + + + ++ + + YF + I + + DR L + V S +
Sbjct: 121 EAIVQKYHRQTLEVREGEQNQGVRLALYFERRAPDITNAYDVLADRALAEAVYTSLGLPQ 180
Query: 176 KYISLPFLKDV--LTLGLANP---KKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
++ K L L ++ NRF A+ + P GS+S + +
Sbjct: 181 EFAMTDIDKQAAYLEERLDFSKFGDADYLAKFLNRFSALYDLSN-GPTGSMSPTLALFGN 239
Score = 117 bits (292), Expect = 9e-24, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 66/167 (39%), Gaps = 1/167 (0%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
+ + +++Y+R+NI I ++D+ D R+ +Y + + + + F++ VL
Sbjct: 20 KTVAADPMVERQTEYYRENIRDIKTIDEFLGDDRIFNYAMTAMGLEDMIYAKAFIRKVLE 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFN-NTIDC 247
G + + + D +++ AE F F+ G + + ++K +
Sbjct: 80 EGTDDRGAFANQLADTKYKNFAETFNFKRYGETTTSFARTQEAIVQKYHRQTLEVREGEQ 139
Query: 248 VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
V Y++ +++ D L D L + + SL D
Sbjct: 140 NQGVRLALYFERRAPDITNAYDVLADRALAEAVYTSLGLPQEFAMTD 186
Score = 85.7 bits (210), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/202 (13%), Positives = 61/202 (30%), Gaps = 34/202 (16%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ D ++ + Y+ + IK+ID L +A+ A L
Sbjct: 22 VAADPMVERQTEYYRENIRDIKTIDEFLGDDR-------------IFNYAMTAMGLEDMI 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R VL D ++AN+ D + FNF G ++
Sbjct: 69 YAKAFIRKVLEEGTDDRGAFANQLADTKYKNFAETFNFKRYGETTTSFARTQEAIVQKYH 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ ++ + Y+ I + ++LA++ +
Sbjct: 129 RQTLE--------------------VREGEQNQGVRLALYFERRAPDITNAYDVLADRAL 168
Query: 527 LNFLLESKGIDSQKVREDFLCE 548
+ S G+ Q+ + +
Sbjct: 169 AEAVYTSLGL-PQEFAMTDIDK 189
Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/244 (13%), Positives = 79/244 (32%), Gaps = 23/244 (9%)
Query: 226 KILTDMQIEKIVSNYFNNTIDCVPIVSDQN-YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
L+ +Q+ + T+ P+V Q YY+ I + + +FL D ++F ++
Sbjct: 3 NTLSQVQLVRTNMERSLKTVAADPMVERQTEYYRENIRDIKTIDEFLGDDRIFNYAMTAM 62
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKY----------FFQINFHRDNSSSTKIQQDSQI 334
+ +++E NF R ++T + +Q
Sbjct: 63 GLEDMIYAKAFIRKVLEEGTDDRGAFANQLADTKYKNFAETFNFKRYGETTTSFAR-TQE 121
Query: 335 QKMLDLYKKNCQILHDDKMQS--LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT 392
+ +++ ++ ++ Q L ++ I + ++L+ + E ++
Sbjct: 122 AIVQKYHRQTLEVREGEQNQGVRLALYFERRAPDITNAYDVLADRALAEAVYTSLGLPQE 181
Query: 393 LQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGP 452
++ + S D D A +R L N GS+ P
Sbjct: 182 FAMT------DIDKQAAYLEERLDFSKFGDADYLAKFL--NRFSALYDLSN-GPTGSMSP 232
Query: 453 IPMM 456
+
Sbjct: 233 TLAL 236
>gi|150395478|ref|YP_001325945.1| hypothetical protein Smed_0251 [Sinorhizobium medicae WSM419]
gi|150026993|gb|ABR59110.1| protein of unknown function DUF1217 [Sinorhizobium medicae WSM419]
Length = 259
Score = 227 bits (577), Expect = 7e-57, Method: Composition-based stats.
Identities = 60/250 (24%), Positives = 107/250 (42%), Gaps = 11/250 (4%)
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
+ + + + + + ++ E +YY I +I + +E A+ R+ ++ +++
Sbjct: 2 TTTYTSYKLITADLTKSLERVSEQPDVARETEYYLSKIGSIKTLDEFFADSRLYDYAMKA 61
Query: 534 KGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQ 593
G++ + F+ ++ + +FAN D RYK ++ S NF HGE +
Sbjct: 62 HGLEDMAYAKAFMRKVLGEGIDSDDAFANKLADGRYKSLVESLNFARHGEAATSF----- 116
Query: 594 DNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKK 653
+ Y Q +E+K E++ + LALYF+R P I N YEI+ D L VV
Sbjct: 117 -ERAQKGVAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSHVVRTV 175
Query: 654 LKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM-----DHQSIDYKKAL 708
L+L FA ++ + + + DF+D KV +FL A+ D
Sbjct: 176 LQLPEEFAATDVDRQAAAYESAVDLKDFQDPHKVAEFLDRFTALWEIDNSSDGYDPLAVF 235
Query: 709 FSSPNQNKDP 718
SS P
Sbjct: 236 GSSSGYGISP 245
Score = 163 bits (413), Expect = 7e-38, Method: Composition-based stats.
Identities = 43/191 (22%), Positives = 85/191 (44%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M ++ + +K VS+ P V+ E YY +I I T+DEF D RL+ YA+K
Sbjct: 1 MTTTYTSYKLITADLTKSLERVSEQPDVARETEYYLSKIGSIKTLDEFFADSRLYDYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A GL DM++A+ F++K+L + + N+L +Y+ S +F+ + S + +
Sbjct: 61 AHGLEDMAYAKAFMRKVLGEGIDSDDAFANKLADGRYKSLVESLNFARHGEAATSFERAQ 120
Query: 121 TII-----QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ + + +E + + YF++ I + ++ D L V +
Sbjct: 121 KGVAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSHVVRTVLQLPE 180
Query: 176 KYISLPFLKDV 186
++ + +
Sbjct: 181 EFAATDVDRQA 191
Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 3/197 (1%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
+ +K I D +S + ++ E++Y+ I I ++D+ F D RL DY +++
Sbjct: 2 TTTYTSYKLITADLTKSLERVSEQPDVARETEYYLSKIGSIKTLDEFFADSRLYDYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + F++ VL G+ + + + D R++++ E+ F G + +
Sbjct: 62 HGLEDMAYAKAFMRKVLGEGIDSDDAFANKLADGRYKSLVESLNFARHGEAATSFERAQK 121
Query: 231 MQIEKIVSNYFNNTI-DCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNP 289
EK + V Y++ ++++ + + D L +++ L
Sbjct: 122 GVAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSHVVRTVLQLPEE 181
Query: 290 EITADKFLTLMQENDPI 306
D +
Sbjct: 182 FAATDVDRQAAAYESAV 198
Score = 77.2 bits (188), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 62/213 (29%), Gaps = 33/213 (15%)
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFA 396
DL K ++ + + Y +G IK++D + +A
Sbjct: 12 TADLTKSLERVSEQPDVARETEYYLSKIGSIKTLDEFFADSR-------------LYDYA 58
Query: 397 LDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM 456
+ A+ L + +R VL D++ANK D R L + NF G
Sbjct: 59 MKAHGLEDMAYAKAFMRKVLGEGIDSDDAFANKLADGRYKSLVESLNFARHGEAATSFER 118
Query: 457 QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
+ + +K Y+ TI +
Sbjct: 119 AQKGVAEKYTRQTLEQK--------------------AGEENTGVRLALYFQRMAPTIAN 158
Query: 517 FEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
E++A++ + + + + + D +
Sbjct: 159 GYEIIADEALSHVVRTVLQLPEEFAATDVDRQA 191
Score = 39.1 bits (89), Expect = 2.9, Method: Composition-based stats.
Identities = 11/118 (9%), Positives = 32/118 (27%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
I ++ + + + YY I S+ + +F D +L+ + +
Sbjct: 11 ITADLTKSLERVSEQPDVARETEYYLSKIGSIKTLDEFFADSRLYDYAMKAHGLEDMAYA 70
Query: 293 ADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHD 350
++ E ++ S + + + +K +
Sbjct: 71 KAFMRKVLGEGIDSDDAFANKLADGRYKSLVESLNFARHGEAATSFERAQKGVAEKYT 128
>gi|126031430|pdb|2O8S|A Chain A, X-Ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120.
gi|126031431|pdb|2O8S|B Chain B, X-Ray Crystal Structure Of Protein Agr_c_984 From
Agrobacterium Tumefaciens. Northeast Structural Genomics
Consortium Target Atr120
Length = 323
Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 98/250 (39%), Gaps = 11/250 (4%)
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
S + + + + + ++ E +YY I ++ S ++ A+ R+ N+ L++
Sbjct: 55 TSTYTSYRLISQDIGKSLERVSKQPDVARETEYYREKIGSVKSIDDFXADTRLYNYALKA 114
Query: 534 KGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQ 593
G++ + F+ ++ D +FAN DNRY E+ S +F
Sbjct: 115 HGLEDXAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAG------LGAAATA 168
Query: 594 DNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKK 653
Y Q +E++ + + + LALYF+R P I++ + L D L +V
Sbjct: 169 TEAAKSGVIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTT 228
Query: 654 LKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKA-----MDHQSIDYKKAL 708
L FA K+ +++K I I D +D +KV L + D
Sbjct: 229 FNLPDAFAAADVDKQAALIEKSINIKDLQDPEKVGKLLERFTIXWEXQNPSTTYDPLAVF 288
Query: 709 FSSPNQNKDP 718
SS P
Sbjct: 289 GSSSGYGISP 298
Score = 168 bits (424), Expect = 4e-39, Method: Composition-based stats.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 5/189 (2%)
Query: 3 PSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAF 62
++ + K VSK P V+ E YYRE+I + +ID+F D RL++YALKA
Sbjct: 56 STYTSYRLISQDIGKSLERVSKQPDVARETEYYREKIGSVKSIDDFXADTRLYNYALKAH 115
Query: 63 GLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTI 122
GL D ++A+ FI+K+L SD + N+L+ +Y A+S DF+ + K+
Sbjct: 116 GLEDXAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSG 175
Query: 123 I-----QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKY 177
+ + + + + + YF + I S D L +F++ +
Sbjct: 176 VIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAF 235
Query: 178 ISLPFLKDV 186
+ K
Sbjct: 236 AAADVDKQA 244
Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats.
Identities = 40/194 (20%), Positives = 82/194 (42%), Gaps = 11/194 (5%)
Query: 108 PPPKVIQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLD 165
V + ++ I QD +S + K+ E++Y+R+ I + S+D D RL +
Sbjct: 50 SGGSVTSTYTSYRLISQDIGKSLERVSKQPDVARETEYYREKIGSVKSIDDFXADTRLYN 109
Query: 166 YVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRD 225
Y L++ + + F++ VLT G ++ + + DNR+ +A++ F
Sbjct: 110 YALKAHGLEDXAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAG----LGAA 165
Query: 226 KILTDMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKML 280
T+ ++ NY T++ + Y++ ++ S DFL D L ++
Sbjct: 166 ATATEAAKSGVIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVF 225
Query: 281 QLSLFPLNPEITAD 294
+ + + AD
Sbjct: 226 RTTFNLPDAFAAAD 239
Score = 90.3 bits (222), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 64/203 (31%), Gaps = 33/203 (16%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + + Y+ +G +KSID+ + +AL A+ L
Sbjct: 75 VSKQPDVARETEYYREKIGSVKSIDDFXADTR-------------LYNYALKAHGLEDXA 121
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R VLT SD +++ANK D+R +L + +F G+ I +
Sbjct: 122 YAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYA 181
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ ++ + Y+ TI S + LA+ +
Sbjct: 182 RQTLEQEAGDDNNG--------------------VRLALYFERKAPTIKSGLDFLADDAL 221
Query: 527 LNFLLESKGIDSQKVREDFLCEI 549
+ + D +
Sbjct: 222 AQVFRTTFNLPDAFAAADVDKQA 244
Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 21/221 (9%)
Query: 219 GSLSKRDKILTDMQIEKIVSNYFNNTIDCVP----IVSDQNYYKLAINSVSSFSDFLKDP 274
GS + + +++S +++ V + + YY+ I SV S DF D
Sbjct: 46 GSNESGGSVTSTYTSYRLISQDIGKSLERVSKQPDVARETEYYREKIGSVKSIDDFXADT 105
Query: 275 KLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQI 334
+L+ + + ++ E + N + + + S
Sbjct: 106 RLYNYALKAHGLEDXAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAA 165
Query: 335 QKMLDLYKKN-----------CQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGP 383
+ K + D+ L ++ IKS + L+ +
Sbjct: 166 ATATEAAKSGVIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVF 225
Query: 384 NSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPD 424
+ A ++ +++ + DP+
Sbjct: 226 RTTFNLPDAFAAA------DVDKQAALIEKSINIKDLQDPE 260
>gi|307311550|ref|ZP_07591191.1| protein of unknown function DUF1217 [Sinorhizobium meliloti BL225C]
gi|306899567|gb|EFN30196.1| protein of unknown function DUF1217 [Sinorhizobium meliloti BL225C]
Length = 259
Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats.
Identities = 58/250 (23%), Positives = 106/250 (42%), Gaps = 11/250 (4%)
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
+ + + + + + ++ E +YY I +I + ++ A+ R+ N+ +++
Sbjct: 2 TTTYTSYRLITADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKA 61
Query: 534 KGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQ 593
G++ + F+ ++ + +FAN D RYK ++ S NF HGE +
Sbjct: 62 HGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAF----- 116
Query: 594 DNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKK 653
+ Y Q +E+K E++ + LALYF+R P I N YEI+ D L VV
Sbjct: 117 -ERAQKGVAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSSVVRTV 175
Query: 654 LKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM-----DHQSIDYKKAL 708
L+L FA ++ + I DF+D +K+ +FL A+ D
Sbjct: 176 LQLPAEFAAADVDRQADAYEAAIDFKDFQDPQKIAEFLDRFTALWEIDNSSDGYDPLAVF 235
Query: 709 FSSPNQNKDP 718
+ P
Sbjct: 236 GALSGYGISP 245
Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M ++ + +K VS P V+ E YY +I I T+D+F D RL++YA+K
Sbjct: 1 MTTTYTSYRLITADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A GL DM++A+ F++K+L + + N+L +Y+ S +F+ + + + +
Sbjct: 61 AHGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFERAQ 120
Query: 121 TII-----QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ + + +E + + YF++ I + ++ D L V +
Sbjct: 121 KGVAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSSVVRTVLQLPA 180
Query: 176 KYISLPFLKDV 186
++ + +
Sbjct: 181 EFAAADVDRQA 191
Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 87/233 (37%), Gaps = 7/233 (3%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
+ ++ I D +S + + E++Y+ I I ++D F D RL +Y +++
Sbjct: 2 TTTYTSYRLITADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + F++ VL G+ + + + D R++A+ E+ F G + +
Sbjct: 62 HGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFERAQK 121
Query: 231 MQIEKIVSNYFNNTI-DCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNP 289
EK + V Y++ ++++ + + D L +++ L
Sbjct: 122 GVAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSSVVRTVLQLPAE 181
Query: 290 EITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYK 342
AD + ++ D + + + + + + +I D Y
Sbjct: 182 FAAAD----VDRQADAYEAAIDFKDFQDPQKIAEFLDRFTALWEIDNSSDGYD 230
Score = 78.8 bits (192), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 33/213 (15%)
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFA 396
DL K ++ + + Y +G IK++D+ + +A
Sbjct: 12 TADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSR-------------LYNYA 58
Query: 397 LDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM 456
+ A+ L + +R VL D++ANK D R L + NF G
Sbjct: 59 MKAHGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFER 118
Query: 457 QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
+ + +K Y+ TI +
Sbjct: 119 AQKGVAEKYTRQTLEQK--------------------AGEENTGVRLALYFQRMAPTIAN 158
Query: 517 FEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
E++A++ + + + + ++ D +
Sbjct: 159 GYEIIADEALSSVVRTVLQLPAEFAAADVDRQA 191
>gi|15964408|ref|NP_384761.1| hypothetical protein SMc03023 [Sinorhizobium meliloti 1021]
gi|307318905|ref|ZP_07598336.1| protein of unknown function DUF1217 [Sinorhizobium meliloti AK83]
gi|15073585|emb|CAC45227.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306895319|gb|EFN26074.1| protein of unknown function DUF1217 [Sinorhizobium meliloti AK83]
Length = 259
Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 107/250 (42%), Gaps = 11/250 (4%)
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
+ + + + + + ++ E +YY I +I + ++ A+ R+ N+ +++
Sbjct: 2 TTTYTSYRLITADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKA 61
Query: 534 KGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQ 593
G++ + F+ ++ + +FAN D RYK ++ S NF HGE +
Sbjct: 62 HGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAF----- 116
Query: 594 DNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKK 653
+ Y Q +E+K E++ + LALYF+R P I N YEI+ D L VV
Sbjct: 117 -ERAQKGVAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSSVVRTV 175
Query: 654 LKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM-----DHQSIDYKKAL 708
L+L FA ++ + I DF+D +K+ +FL A+ D
Sbjct: 176 LQLPAEFAAADVDRQADAYEAAIDFKDFQDPQKIAEFLDRFTALWEIDNSSDGYDPLAVF 235
Query: 709 FSSPNQNKDP 718
+S P
Sbjct: 236 GASSGYGISP 245
Score = 161 bits (406), Expect = 6e-37, Method: Composition-based stats.
Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M ++ + +K VS P V+ E YY +I I T+D+F D RL++YA+K
Sbjct: 1 MTTTYTSYRLITADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A GL DM++A+ F++K+L + + N+L +Y+ S +F+ + + + +
Sbjct: 61 AHGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFERAQ 120
Query: 121 TII-----QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ + + +E + + YF++ I + ++ D L V +
Sbjct: 121 KGVAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSSVVRTVLQLPA 180
Query: 176 KYISLPFLKDV 186
++ + +
Sbjct: 181 EFAAADVDRQA 191
Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 73/185 (39%), Gaps = 3/185 (1%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
+ ++ I D +S + + E++Y+ I I ++D F D RL +Y +++
Sbjct: 2 TTTYTSYRLITADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSRLYNYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + F++ VL G+ + + + D R++A+ E+ F G + +
Sbjct: 62 HGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFERAQK 121
Query: 231 MQIEKIVSNYFNNTI-DCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNP 289
EK + V Y++ ++++ + + D L +++ L
Sbjct: 122 GVAEKYTRQTLEQKAGEENTGVRLALYFQRMAPTIANGYEIIADEALSSVVRTVLQLPAE 181
Query: 290 EITAD 294
AD
Sbjct: 182 FAAAD 186
Score = 78.8 bits (192), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 33/213 (15%)
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFA 396
DL K ++ + + Y +G IK++D+ + +A
Sbjct: 12 TADLTKSLERVSAQPDVARETEYYLSKIGSIKTLDDFFADSR-------------LYNYA 58
Query: 397 LDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM 456
+ A+ L + +R VL D++ANK D R L + NF G
Sbjct: 59 MKAHGLEDMAYAKAFMRKVLAEGIDSDDAFANKLADGRYKALVESLNFARHGEAATAFER 118
Query: 457 QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
+ + +K Y+ TI +
Sbjct: 119 AQKGVAEKYTRQTLEQK--------------------AGEENTGVRLALYFQRMAPTIAN 158
Query: 517 FEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
E++A++ + + + + ++ D +
Sbjct: 159 GYEIIADEALSSVVRTVLQLPAEFAAADVDRQA 191
>gi|325291946|ref|YP_004277810.1| hypothetical protein AGROH133_03954 [Agrobacterium sp. H13-3]
gi|325059799|gb|ADY63490.1| hypothetical protein AGROH133_03954 [Agrobacterium sp. H13-3]
Length = 259
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 52/250 (20%), Positives = 100/250 (40%), Gaps = 11/250 (4%)
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
S + + + + + ++ E +YY I ++ S ++ +A+ R+ N+ L++
Sbjct: 2 TSTYTSYRLISQDIGKSLERVSKQPDVARETEYYRSKIGSVKSVDDFMADTRLYNYALKA 61
Query: 534 KGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQ 593
G++ + F+ ++ D +FAN D+RY ++ S +F G +
Sbjct: 62 NGLEDMAYAKAFIRKVLTEGTADKNAFANKLSDSRYSDLAKSLDFASLGAAATATEAA-- 119
Query: 594 DNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKK 653
Y Q +E++ + + LALYF+R P I++ + L D L +V
Sbjct: 120 ----QSGIISKYTRQTLEQEAGGDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTA 175
Query: 654 LKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM-----DHQSIDYKKAL 708
L A K+ +++K I I D ++ +KV L M + D
Sbjct: 176 YNLPDEIAAGSVEKQAALIEKSINIKDLQNPEKVGKLLERFTIMWEMQNPSTTYDPLAVF 235
Query: 709 FSSPNQNKDP 718
SS P
Sbjct: 236 GSSSGYGISP 245
Score = 170 bits (429), Expect = 1e-39, Method: Composition-based stats.
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 5/191 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M ++ + K VSK P V+ E YYR +I + ++D+F+ D RL++YALK
Sbjct: 1 MTSTYTSYRLISQDIGKSLERVSKQPDVARETEYYRSKIGSVKSVDDFMADTRLYNYALK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A GL DM++A+ FI+K+L +D + N+L+ +Y A+S DF+ + +
Sbjct: 61 ANGLEDMAYAKAFIRKVLTEGTADKNAFANKLSDSRYSDLAKSLDFASLGAAATATEAAQ 120
Query: 121 TII-----QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ I + + + + + YF + I S D L ++++
Sbjct: 121 SGIISKYTRQTLEQEAGGDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTAYNLPD 180
Query: 176 KYISLPFLKDV 186
+ + K
Sbjct: 181 EIAAGSVEKQA 191
Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 12/188 (6%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
+ ++ I QD +S + K+ E++Y+R I + SVD D RL +Y L++
Sbjct: 2 TSTYTSYRLISQDIGKSLERVSKQPDVARETEYYRSKIGSVKSVDDFMADTRLYNYALKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + F++ VLT G A+ + + D+R+ +A++ F G+ + +
Sbjct: 62 NGLEDMAYAKAFIRKVLTEGTADKNAFANKLSDSRYSDLAKSLDFASLGAAATATE---- 117
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
I+S Y T++ + Y++ ++ S DFL D L ++ + + +
Sbjct: 118 AAQSGIISKYTRQTLEQEAGGDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTA-Y 176
Query: 286 PLNPEITA 293
L EI A
Sbjct: 177 NLPDEIAA 184
Score = 92.2 bits (227), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 62/203 (30%), Gaps = 33/203 (16%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + + Y+ +G +KS+D+ ++ +AL A L
Sbjct: 22 VSKQPDVARETEYYRSKIGSVKSVDDFMADTR-------------LYNYALKANGLEDMA 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R VLT +D +++ANK D R L + +F + G+ I
Sbjct: 69 YAKAFIRKVLTEGTADKNAFANKLSDSRYSDLAKSLDFASLGAAATATEAAQSGIISKYT 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ ++ + Y+ TI S + LA+ +
Sbjct: 129 RQTLEQEAGGDNNG--------------------VRLALYFERKAPTIKSGLDFLADDAL 168
Query: 527 LNFLLESKGIDSQKVREDFLCEI 549
+ + + +
Sbjct: 169 AQVFRTAYNLPDEIAAGSVEKQA 191
Score = 46.8 bits (109), Expect = 0.015, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLN---- 288
I + + + + YY+ I SV S DF+ D +L+ + +
Sbjct: 11 ISQDIGKSLERVSKQPDVARETEYYRSKIGSVKSVDDFMADTRLYNYALKANGLEDMAYA 70
Query: 289 --------PEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDL 340
E TADK + +D S + +++T+ Q I K
Sbjct: 71 KAFIRKVLTEGTADKNAFANKLSDSRYSDLAKSLDFASLGAAATATEAAQSGIISKYTRQ 130
Query: 341 YKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSA 386
+ ++ ++ L ++ IKS + L+ + +A
Sbjct: 131 TLEQEAGGDNNGVR-LALYFERKAPTIKSGLDFLADDALAQVFRTA 175
>gi|254500914|ref|ZP_05113065.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11]
gi|222436985|gb|EEE43664.1| conserved hypothetical protein [Labrenzia alexandrii DFL-11]
Length = 276
Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats.
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 7/224 (3%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
N+M++ + ++ + +YY NI I S ++ +A+ RI + + + G++ +
Sbjct: 26 NNMDRSLATVAADPVVDRQTEYYRENIRNIKSVDDFMADDRIYRYAMTAMGLEDMIYAKA 85
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ +FAN D++Y+ +FNF +GE + + Q+ D
Sbjct: 86 FMRKVLTEGTASRAAFANQLADSKYRNFAETFNFANYGETAT-SFSRTQEG-----IVDK 139
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
+ Q +E KE ++ + LALYF+R I ++IL D L + V L L FA+
Sbjct: 140 FHRQTLEVKEGAQNDGVRLALYFERKASEITGPFDILADRALAETVRTALGLPDAFALTD 199
Query: 665 ERKKIRILKKHIKINDF-KDSKKVEDFLYAAKAMDHQSIDYKKA 707
K+ KH+ D + + FL AM S + A
Sbjct: 200 IDKQAEYFDKHLDYEKLSSDPEYLSKFLERFSAMYDLSNGAQTA 243
Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 5/180 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + ++ + +TV+ DP+V + YYRE I++I ++D+F+ D R++ YA+
Sbjct: 14 MINTLTQVQIVRNNMDRSLATVAADPVVDRQTEYYRENIRNIKSVDDFMADDRIYRYAMT 73
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A GL DM +A+ F++K+L + + NQL KY+ FA +++F+ + S + +
Sbjct: 74 AMGLEDMIYAKAFMRKVLTEGTASRAAFANQLADSKYRNFAETFNFANYGETATSFSRTQ 133
Query: 121 TIIQDYK-----QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
I D + + + + + YF + +I + DR L + V + +
Sbjct: 134 EGIVDKFHRQTLEVKEGAQNDGVRLALYFERKASEITGPFDILADRALAETVRTALGLPD 193
Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 9/175 (5%)
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
D + + V +++Y+R+NI I SVD D R+ Y + + + + F++
Sbjct: 29 DRSLATVAADPVVDRQTEYYRENIRNIKSVDDFMADDRIYRYAMTAMGLEDMIYAKAFMR 88
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNT 244
VLT G A+ + + D+++R AE F F G + E IV + T
Sbjct: 89 KVLTEGTASRAAFANQLADSKYRNFAETFNFANYGETATSFSRT----QEGIVDKFHRQT 144
Query: 245 IDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ + Y++ + ++ D L D L + ++ +L + D
Sbjct: 145 LEVKEGAQNDGVRLALYFERKASEITGPFDILADRALAETVRTALGLPDAFALTD 199
Score = 88.0 bits (216), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/205 (13%), Positives = 61/205 (29%), Gaps = 33/205 (16%)
Query: 345 CQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNM 404
+ D + + Y+ + IKS+D+ ++ ++A+ A L
Sbjct: 33 ATVAADPVVDRQTEYYRENIRNIKSVDDFMADDR-------------IYRYAMTAMGLED 79
Query: 405 QDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRD 464
+ +R VLT + ++AN+ D + FNF G +
Sbjct: 80 MIYAKAFMRKVLTEGTASRAAFANQLADSKYRNFAETFNFANYGETATSFSRTQEGIVDK 139
Query: 465 NVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANK 524
+ K + + Y+ + I ++LA++
Sbjct: 140 FHRQTLEVKEGAQN--------------------DGVRLALYFERKASEITGPFDILADR 179
Query: 525 RILNFLLESKGIDSQKVREDFLCEI 549
+ + + G+ D +
Sbjct: 180 ALAETVRTALGLPDAFALTDIDKQA 204
Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 77/233 (33%), Gaps = 27/233 (11%)
Query: 222 SKRDKILTDMQIEKIVSNYFNNTIDCVPIV-SDQNYYKLAINSVSSFSDFLKDPKLFKML 280
+ LT +QI + + T+ P+V YY+ I ++ S DF+ D ++++
Sbjct: 12 ADMINTLTQVQIVRNNMDRSLATVAADPVVDRQTEYYRENIRNIKSVDDFMADDRIYRYA 71
Query: 281 QLSLFPLNPEITADKFLTLMQENDPIVSQVKY----------FFQINFHRDNSSSTKIQQ 330
++ + ++ E + NF ++T +
Sbjct: 72 MTAMGLEDMIYAKAFMRKVLTEGTASRAAFANQLADSKYRNFAETFNFANYGETATSFSR 131
Query: 331 DSQIQKMLDLYKKNCQILHDDKMQS---LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAE 387
+ ++D + + + + L ++ +I ++L+ + E +A
Sbjct: 132 TQ--EGIVDKFHRQTLEVKEGAQNDGVRLALYFERKASEITGPFDILADRALAETVRTAL 189
Query: 388 EPIITLQFALDAYNLNMQDLDRDQLRNVL--TSNPSDPDSYANKSKDDRLIKL 438
DA+ L D + L SDP+ + +R +
Sbjct: 190 GLP-------DAFALTDIDKQAEYFDKHLDYEKLSSDPEYLSKFL--ERFSAM 233
>gi|319409193|emb|CBI82837.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 266
Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats.
Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 30/272 (11%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S + + + ++M+Q S+Q ++ E DYY +I I S ++ LA+ RI + +++
Sbjct: 3 STYMSYRSTIDNMKQTSSQLFNEPQVKRETDYYVSHIIGIRSVDDFLADDRIYRYAMKAY 62
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + + ++ DP +A+ D RY++ ++FNF ++GE + Q
Sbjct: 63 GLEDMIYAKGMMRKVL----SDPD-YASQLTDRRYQQFAAAFNFSVYGEEAT------QR 111
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN---------HYEILGDSK 645
T + Y Q +E K E++ LALYF RTI + Y+ILGD
Sbjct: 112 ESAKTGTVNKYMQQTLEIKVGEENEGTRLALYFTRTIGEMTKSGVLSEKSWAYQILGDKA 171
Query: 646 LFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYK 705
L VV L + + +L+ + + D +D KK+E F+ AM D +
Sbjct: 172 LSAVVFTALNIPESVRSSKIEAQKSLLESRMSLGDLEDPKKLEQFIARFSAM----YDAQ 227
Query: 706 KALFSSPNQNKDPWNNSFDDPQNNVSLQLSPQ 737
+ +P D L SP+
Sbjct: 228 NR------TDTNPALTLLQDSNLGSGLAFSPE 253
Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/235 (25%), Positives = 104/235 (44%), Gaps = 28/235 (11%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++++ + D + S + +P V E YY I I ++D+F+ D R++ YA+K
Sbjct: 1 MISTYMSYRSTIDNMKQTSSQLFNEPQVKRETDYYVSHIIGIRSVDDFLADDRIYRYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL DM +A+ ++K+L SDP +QL +YQ FA +++FS + Q +
Sbjct: 61 AYGLEDMIYAKGMMRKVL----SDPD-YASQLTDRRYQQFAAAFNFSVYGEEATQRESAK 115
Query: 120 KTIIQDYKQSHQH----KEEVALEESKYFRKNIHKIN---------SVDQLFKDRRLLDY 166
+ Y Q +E + YF + I ++ Q+ D+ L
Sbjct: 116 TGTVNKYMQQTLEIKVGEENEGTRLALYFTRTIGEMTKSGVLSEKSWAYQILGDKALSAV 175
Query: 167 VLQSFSITPKYIS------LPFLKDVLTL-GLANPKKYFIESRDNRFRAMAENFR 214
V + +I S L+ ++L L +PKK E RF AM +
Sbjct: 176 VFTALNIPESVRSSKIEAQKSLLESRMSLGDLEDPKKL--EQFIARFSAMYDAQN 228
Score = 90.7 bits (223), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/184 (17%), Positives = 69/184 (37%), Gaps = 17/184 (9%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
I + + +++ I + KQ+ E E+ Y+ +I I SVD D R+ Y +++
Sbjct: 2 ISTYMSYRSTIDNMKQTSSQLFNEPQVKRETDYYVSHIIGIRSVDDFLADDRIYRYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + + ++ VL ++P Y + D R++ A F F G + + +
Sbjct: 62 YGLEDMIYAKGMMRKVL----SDPD-YASQLTDRRYQQFAAAFNFSVYGEEATQRESAKT 116
Query: 231 MQIEKIVSNYFNNTI-DCVPIVSDQNYYKLAINSVSS---------FSDFLKDPKLFKML 280
+ K + + + Y+ I ++ L D L ++
Sbjct: 117 GTVNKYMQQTLEIKVGEENEGTRLALYFTRTIGEMTKSGVLSEKSWAYQILGDKALSAVV 176
Query: 281 QLSL 284
+L
Sbjct: 177 FTAL 180
Score = 79.9 bits (195), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 87/243 (35%), Gaps = 38/243 (15%)
Query: 342 KKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYN 401
+ + Q+ ++ +++ Y + I+S+D+ L+ ++A+ AY
Sbjct: 17 QTSSQLFNEPQVKRETDYYVSHIIGIRSVDDFLADDR-------------IYRYAMKAYG 63
Query: 402 LNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLT 461
L + +R VL SDPD YA++ D R + AFNF+ G T
Sbjct: 64 LEDMIYAKGMMRKVL----SDPD-YASQLTDRRYQQFAAAFNFSVYGEEATQRESAKTGT 118
Query: 462 IRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELL 521
+ ++ K + + + + + ++ + Y ++L
Sbjct: 119 VNKYMQQTLEIKVGEENEGTRLALYFTRTIGEMTKSGVLSEKSWAY-----------QIL 167
Query: 522 ANKRILNFLLESKGI-DSQKVREDFLCEIFKS------DLKDPKSFANTYKDNRYKEIIS 574
+K + + + I +S + + + DL+DPK R+ +
Sbjct: 168 GDKALSAVVFTALNIPESVRSSKIEAQKSLLESRMSLGDLEDPKKLEQFIA--RFSAMYD 225
Query: 575 SFN 577
+ N
Sbjct: 226 AQN 228
Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 246 DCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDP 305
+ + + +YY I + S DFL D ++++ + + L I A + + +
Sbjct: 24 NEPQVKRETDYYVSHIIGIRSVDDFLADDRIYRY-AMKAYGLEDMIYAKGMMRKVLSDPD 82
Query: 306 IVSQV------KYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNC---QILHDDKMQSL 356
SQ+ ++ NF +T Q++S ++ Y + ++ +++ L
Sbjct: 83 YASQLTDRRYQQFAAAFNFSVYGEEAT--QRESAKTGTVNKYMQQTLEIKVGEENEGTRL 140
Query: 357 IKDYQLPLGKIK 368
+ +G++
Sbjct: 141 ALYFTRTIGEMT 152
>gi|115523169|ref|YP_780080.1| hypothetical protein RPE_1148 [Rhodopseudomonas palustris BisA53]
gi|115517116|gb|ABJ05100.1| protein of unknown function DUF1217 [Rhodopseudomonas palustris
BisA53]
Length = 257
Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 6/228 (2%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S + ++ + Q +++ E YY +I+ + S E+ + + R+ ++ +++
Sbjct: 3 STVTSYQFITQNLARSLAQTASKPDVSHETTYYLAHIHNVTSVEQFVGDFRLFSYAMKAY 62
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G+ + FL ++ + DP SFAN D RY+E ++FNF GE + +
Sbjct: 63 GLADMTYAKAFLRKVLTEGVADPSSFANKLVDTRYREFAAAFNFASLGEQATRTTAAT-- 120
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
T + Y Q +E+ E D + LALYF+R P ++ Y+IL D L +V L
Sbjct: 121 ----SGTVERYVRQSLEQDAGETDQGVQLALYFERKAPTLKTAYQILADKALLQVAQTTL 176
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSI 702
+SP ++ ++ +L K I +DF+ K+ FL A
Sbjct: 177 GISPLTSMASIDRQAAMLAKKIDFSDFQHPTKLRAFLQRFSARWETEY 224
Score = 163 bits (412), Expect = 9e-38, Method: Composition-based stats.
Identities = 55/259 (21%), Positives = 120/259 (46%), Gaps = 9/259 (3%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + ++ + + P VS E YY I +++++++F+ D RLFSYA+K
Sbjct: 1 MVSTVTSYQFITQNLARSLAQTASKPDVSHETTYYLAHIHNVTSVEQFVGDFRLFSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL+DM++A+ F++K+L ++DP S N+L +Y+ FA +++F+ + ++
Sbjct: 61 AYGLADMTYAKAFLRKVLTEGVADPSSFANKLVDTRYREFAAAFNFASLGEQATRTTAAT 120
Query: 120 KTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
++ Y + ++ + ++ + YF + + + Q+ D+ LL + I+P
Sbjct: 121 SGTVERYVRQSLEQDAGETDQGVQLALYFERKAPTLKTAYQILADKALLQVAQTTLGISP 180
Query: 176 KYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFR--FQPDGSLSKRDKILTDMQI 233
+ LA + + RA + F ++ + + IL + I
Sbjct: 181 LTSMASIDRQ--AAMLAKKIDFSDFQHPTKLRAFLQRFSARWETEYGQTTTPSILINQTI 238
Query: 234 EKIVSNYFNNTIDCVPIVS 252
VS ++ + + S
Sbjct: 239 TTAVSASTLASLQNLKLGS 257
Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/238 (18%), Positives = 88/238 (36%), Gaps = 22/238 (9%)
Query: 135 EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANP 194
E+ Y+ +IH + SV+Q D RL Y ++++ + + FL+ VLT G+A+P
Sbjct: 26 PDVSHETTYYLAHIHNVTSVEQFVGDFRLFSYAMKAYGLADMTYAKAFLRKVLTEGVADP 85
Query: 195 KKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNN-TIDCVPIVSD 253
+ + D R+R A F F G + R T +E+ V + V
Sbjct: 86 SSFANKLVDTRYREFAAAFNFASLGEQATRTTAATSGTVERYVRQSLEQDAGETDQGVQL 145
Query: 254 QNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF--PLNPEITADKFLTLMQENDPIVSQVK 311
Y++ ++ + L D L ++ Q +L PL + D+ ++ +
Sbjct: 146 ALYFERKAPTLKTAYQILADKALLQVAQTTLGISPLTSMASIDRQAAMLAKK-------- 197
Query: 312 YFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKS 369
+ Q ++++ L + + + I Q + +
Sbjct: 198 -----------IDFSDFQHPTKLRAFLQRFSARWETEYGQTTTPSILINQTITTAVSA 244
Score = 91.9 bits (226), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/261 (16%), Positives = 81/261 (31%), Gaps = 38/261 (14%)
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFA 396
+L + Q + Y + + S++ + +A
Sbjct: 12 TQNLARSLAQTASKPDVSHETTYYLAHIHNVTSVEQFVGD-------------FRLFSYA 58
Query: 397 LDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM 456
+ AY L + LR VLT +DP S+ANK D R + AFNF + G
Sbjct: 59 MKAYGLADMTYAKAFLRKVLTEGVADPSSFANKLVDTRYREFAAAFNFASLGEQATRTTA 118
Query: 457 QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
+ T+ V+ + D + Y+ T+ +
Sbjct: 119 ATSGTVERYVRQSLEQDAGETDQGVQL--------------------ALYFERKAPTLKT 158
Query: 517 FEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSF 576
++LA+K +L + GI + L F++ + + + F
Sbjct: 159 AYQILADKALLQVAQTTLGISPLTSMASIDRQAAM--LAKKIDFSDFQHPTKLRAFLQRF 216
Query: 577 NF---DIHGELSHKKIGKVQD 594
+ +G+ + I Q
Sbjct: 217 SARWETEYGQTTTPSILINQT 237
>gi|218680748|ref|ZP_03528645.1| hypothetical protein RetlC8_18559 [Rhizobium etli CIAT 894]
Length = 262
Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats.
Identities = 88/264 (33%), Positives = 143/264 (54%), Gaps = 2/264 (0%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ ++V+ + S V+ VS + YY+E I ++T+DEF+ D +L+SYA+K
Sbjct: 1 MVSTYVSYLAVARNLNTSLSNVASQATVSRDSAYYKENIDKVTTVDEFMGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDLSD S N L+ +Y FA ++ FS K QSD+Q
Sbjct: 61 AYGLDDMTYAKAFMKKVLESDLSDSSSFANSLSDSRYAEFAAAFKFSGETKTAQSDVQRD 120
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
++ Y+ S + E +E+ YF +NI I SVD RL +Y L +F ++ +Y S
Sbjct: 121 NLLDAYETSFDTEAENIADETDYFEENISSITSVDDFLSSSRLKNYALTAFGLSTEYTSS 180
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
FLK VLT L +P + + D+ + ++A+ F F DGS ++++ QI + S Y
Sbjct: 181 SFLKQVLTSDLDDPDSFVNQLGDDVYVSLAKAFNFNEDGSTD--GDVMSEDQISLVTSGY 238
Query: 241 FNNTIDCVPIVSDQNYYKLAINSV 264
+ + + Y +
Sbjct: 239 AVASSTIASSDTGEAYDTYFAAQI 262
Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/250 (19%), Positives = 99/250 (39%), Gaps = 27/250 (10%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
++ + ++ + YY NI+ + + +E + + ++ ++ +++ G+D + F
Sbjct: 14 NLNTSLSNVASQATVSRDSAYYKENIDKVTTVDEFMGDYKLYSYAMKAYGLDDMTYAKAF 73
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ +SDL D SFAN+ D+RY E ++F F Q + D+ D Y
Sbjct: 74 MKKVLESDLSDSSSFANSLSDSRYAEFAAAFKFSGE-------TKTAQSDVQRDNLLDAY 126
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
+ + E D YF+ I +I + + L S+L LS +
Sbjct: 127 ETSFDTEAENIADETD----YFEENISSITSVDDFLSSSRLKNYALTAFGLSTEYTSSSF 182
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDD 725
K++ +D D ++ D +L + N N+D +
Sbjct: 183 LKQVLT-------SDLDDPD---------SFVNQLGDDVYVSLAKAFNFNEDGSTDGDVM 226
Query: 726 PQNNVSLQLS 735
++ +SL S
Sbjct: 227 SEDQISLVTS 236
Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 27/269 (10%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ + ++ +N + D YYK I+ V++ +F+ D KL+ + + L+
Sbjct: 11 VARNLNTSLSNVASQATVSRDSAYYKENIDKVTTVDEFMGDYKLYSY-AMKAYGLDDMTY 69
Query: 293 ADKFLTLMQENDPIVSQVKYF---------FQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
A F+ + E+D S F F + T Q D Q +LD Y+
Sbjct: 70 AKAFMKKVLESDLSDSSSFANSLSDSRYAEFAAAFKFSGETKT-AQSDVQRDNLLDAYET 128
Query: 344 NCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLN 403
+ + + ++ + I S+D+ LS +AL A+ L+
Sbjct: 129 SFDT-EAENIADETDYFEENISSITSVDDFLSSSR-------------LKNYALTAFGLS 174
Query: 404 MQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIR 463
+ L+ VLTS+ DPDS+ N+ DD + L AFNFN DGS M + ++++
Sbjct: 175 TEYTSSSFLKQVLTSDLDDPDSFVNQLGDDVYVSLAKAFNFNEDGSTDGDVMSEDQISLV 234
Query: 464 DNVKHYANRKRSIHDAENKSFNSMEQIST 492
+ YA +I ++ +
Sbjct: 235 TSG--YAVASSTIASSDTGEAYDTYFAAQ 261
>gi|114762157|ref|ZP_01441625.1| flagellar protein, putative [Pelagibaca bermudensis HTCC2601]
gi|114545181|gb|EAU48184.1| flagellar protein, putative [Roseovarius sp. HTCC2601]
Length = 405
Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats.
Identities = 68/390 (17%), Positives = 140/390 (35%), Gaps = 49/390 (12%)
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+Q +D + + ++ + +G I S + L+ + L
Sbjct: 18 LQNTMDTQRTAFNKTPEITREAA--YFTETIGSIGSAEELVGNRR-------------LL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNF-------NA 446
AL A+ + + + +R ++ D ++ ANK D R + L AF+F
Sbjct: 63 SVALTAFGMEDELDSKYLVRRLIEEGTKDDEALANKLNDSRFVALADAFDFEPVITRKTQ 122
Query: 447 DGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDY 506
+ +++ IR N+ + D + + + Q NLEI+ Y
Sbjct: 123 EEGFAETVLVRYEERIRANLAQTLTEPDYVADPDYAAL-----FAAQVEENLEISR--AY 175
Query: 507 YTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKD 566
+T NI I S EELL + + + + + L + D + + +N D
Sbjct: 176 FTENIGRITSAEELLLDPELRQVATTAFDLGDRARSTTLLRRALEEDPAEATALSNVLND 235
Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626
+ +F F + +Q + + ++ Q E + + I AL
Sbjct: 236 RNLRAFSMAFAF-----YETETSTVLQTEGFASNITEQFRWQRFEDAVSDVNEAIGAALK 290
Query: 627 FKRTIPNI--------RNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIK- 677
F+R++P + Y +LG + + +V L L F+ + K++ ++ +
Sbjct: 291 FQRSLPELAANDLSETAKWYNVLGSTMMREVFETALSLPDGFSQIDLDKQVEVISDRARQ 350
Query: 678 ------INDFKDSKKVEDFLYAAKAMDHQS 701
+D +D K + + + D S
Sbjct: 351 RFGIETFSDLQDPKTLNGIIQSYLLQDQIS 380
Score = 160 bits (405), Expect = 6e-37, Method: Composition-based stats.
Identities = 68/378 (17%), Positives = 134/378 (35%), Gaps = 54/378 (14%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+ D Q F+ K P ++ E Y+ E I I + +E + ++RL S AL AFG+ D +
Sbjct: 21 TMDTQRTAFN---KTPEITREAAYFTETIGSIGSAEELVGNRRLLSVALTAFGMEDELDS 77
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTII------- 123
+ +++++E D ++L N+LN ++ A ++DF P + +
Sbjct: 78 KYLVRRLIEEGTKDDEALANKLNDSRFVALADAFDFEPVITRKTQEEGFAETVLVRYEER 137
Query: 124 -----------------QDYKQSHQHKEEVALEESK-YFRKNIHKINSVDQLFKDRRLLD 165
DY + E LE S+ YF +NI +I S ++L D L
Sbjct: 138 IRANLAQTLTEPDYVADPDYAALFAAQVEENLEISRAYFTENIGRITSAEELLLDPELRQ 197
Query: 166 YVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRD 225
+F + + S L+ L A D RA + F F
Sbjct: 198 VATTAFDLGDRARSTTLLRRALEEDPAEATALSNVLNDRNLRAFSMAFAFYE---TETST 254
Query: 226 KILTDMQIEKIVSNYFNNTIDCVPIVSDQNY-----YKLAINSV--------SSFSDFLK 272
+ T+ I + + ++ ++ ++ + + + + L
Sbjct: 255 VLQTEGFASNITEQFRWQRFEDAVSDVNEAIGAALKFQRSLPELAANDLSETAKWYNVLG 314
Query: 273 DPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDS 332
+ ++ + +L + D + +D + + F I D +Q
Sbjct: 315 STMMREVFETALSLPDGFSQIDLDKQVEVISD----RARQRFGIETFSD------LQDPK 364
Query: 333 QIQKMLDLYKKNCQILHD 350
+ ++ Y QI
Sbjct: 365 TLNGIIQSYLLQDQISQS 382
Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats.
Identities = 49/270 (18%), Positives = 106/270 (39%), Gaps = 30/270 (11%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
N+M+ T EI E Y+T I +I S EEL+ N+R+L+ L + G++ + +
Sbjct: 20 NTMDTQRTAFNKTPEITREAAYFTETIGSIGSAEELVGNRRLLSVALTAFGMEDELDSKY 79
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
+ + + KD ++ AN D+R+ + +F+F+ K Q+ +
Sbjct: 80 LVRRLIEEGTKDDEALANKLNDSRFVALADAFDFEP------VITRKTQEEGFAETVLVR 133
Query: 605 YKHQ---------------------MIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGD 643
Y+ + + + E++ I+ A YF I I + E+L D
Sbjct: 134 YEERIRANLAQTLTEPDYVADPDYAALFAAQVEENLEISRA-YFTENIGRITSAEELLLD 192
Query: 644 SKLFKVVSKKLKLSPYFAVLPERKKI--RILKKHIKINDFKDSKKVEDFLYAAKAMDHQS 701
+L +V + L ++ + +++ + + + F A + ++
Sbjct: 193 PELRQVATTAFDLGDRARSTTLLRRALEEDPAEATALSNVLNDRNLRAFSMAFAFYETET 252
Query: 702 IDYKKALFSSPNQNKDPWNNSFDDPQNNVS 731
+ + N + F+D ++V+
Sbjct: 253 STVLQTEGFASNITEQFRWQRFEDAVSDVN 282
Score = 97.6 bits (241), Expect = 6e-18, Method: Composition-based stats.
Identities = 54/314 (17%), Positives = 117/314 (37%), Gaps = 33/314 (10%)
Query: 117 IQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
Q D +++ +K E+ YF + I I S ++L +RRLL L +F + +
Sbjct: 15 WQILQNTMDTQRTAFNKTPEITREAAYFTETIGSIGSAEELVGNRRLLSVALTAFGMEDE 74
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQI--- 233
S ++ ++ G + + + D+RF A+A+ F F+P + +++ + +
Sbjct: 75 LDSKYLVRRLIEEGTKDDEALANKLNDSRFVALADAFDFEPVITRKTQEEGFAETVLVRY 134
Query: 234 EKIVSNYFNNTIDCVPIVSD------------------QNYYKLAINSVSSFSDFLKDPK 275
E+ + T+ V+D + Y+ I ++S + L DP+
Sbjct: 135 EERIRANLAQTLTEPDYVADPDYAALFAAQVEENLEISRAYFTENIGRITSAEELLLDPE 194
Query: 276 LFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKY---------FFQINFHR-DNSSS 325
L ++ + F L + L E DP + F + F + +S
Sbjct: 195 LRQVATTA-FDLGDRARSTTLLRRALEEDPAEATALSNVLNDRNLRAFSMAFAFYETETS 253
Query: 326 TKIQQDSQIQKMLDLYK-KNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPN 384
T +Q + + + ++ + + D +++ + + N LS +
Sbjct: 254 TVLQTEGFASNITEQFRWQRFEDAVSDVNEAIGAALKFQRSLPELAANDLSETAKWYNVL 313
Query: 385 SAEEPIITLQFALD 398
+ + AL
Sbjct: 314 GSTMMREVFETALS 327
>gi|319406970|emb|CBI80607.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 266
Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats.
Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 22/252 (8%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S + + + ++M+Q + ++ E DYY +I + S +E LAN +I N+ +++
Sbjct: 3 STYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDEFLANDKIYNYAMKAY 62
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + + ++ DP+ +A+ D RY++ +FNF +GE + Q
Sbjct: 63 GLEDMIFAKGMIRKVL----SDPE-YASQLVDKRYQQFAEAFNFSKYGEKAT------QR 111
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNI--------RNH-YEILGDSK 645
T + Y Q +E + E + LALYF RTI + +N Y+IL D
Sbjct: 112 ESAKTVTVNKYMQQTLEVEVGEVNEGTRLALYFTRTIGGMVQNNVLTEKNWAYQILSDKA 171
Query: 646 LFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSID-- 703
L V+ K +S P + +L+ + + D +D KK+E + AM
Sbjct: 172 LSAVIFKAFNISENVLTSPIEVQKSLLESRMSLKDLQDPKKLEHLIAKFSAMYDVQNQTV 231
Query: 704 YKKALFSSPNQN 715
AL N
Sbjct: 232 VNPALMILQGSN 243
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 28/230 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + + D + F + + P V E YY + I + ++DEF+ + ++++YA+K
Sbjct: 1 MISTYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDEFLANDKIYNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL DM A+ I+K+L SDP+ +QL +YQ FA +++FS K Q +
Sbjct: 61 AYGLEDMIFAKGMIRKVL----SDPE-YASQLVDKRYQQFAEAFNFSKYGEKATQRESAK 115
Query: 120 KTIIQDYKQSHQHKEEVALEE----SKYFRKNIHKI---------NSVDQLFKDRRLLDY 166
+ Y Q E + E + YF + I + N Q+ D+ L
Sbjct: 116 TVTVNKYMQQTLEVEVGEVNEGTRLALYFTRTIGGMVQNNVLTEKNWAYQILSDKALSAV 175
Query: 167 VLQSFSITPKYISLP--FLKDVLTL-----GLANPKKYFIESRDNRFRAM 209
+ ++F+I+ ++ P K +L L +PKK E +F AM
Sbjct: 176 IFKAFNISENVLTSPIEVQKSLLESRMSLKDLQDPKKL--EHLIAKFSAM 223
Score = 91.9 bits (226), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 76/197 (38%), Gaps = 25/197 (12%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
I + +++ I + KQ+ ++ E+ Y+ K+I + SVD+ + ++ +Y +++
Sbjct: 2 ISTYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDEFLANDKIYNYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + + ++ VL ++P+ Y + D R++ AE F F G +
Sbjct: 62 YGLEDMIFAKGMIRKVL----SDPE-YASQLVDKRYQQFAEAFNFSKYGE----KATQRE 112
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSS---------FSDFLKDPKL 276
V+ Y T++ ++ Y+ I + L D L
Sbjct: 113 SAKTVTVNKYMQQTLEVEVGEVNEGTRLALYFTRTIGGMVQNNVLTEKNWAYQILSDKAL 172
Query: 277 FKMLQLSLFPLNPEITA 293
++ + +T+
Sbjct: 173 SAVIFKAFNISENVLTS 189
Score = 80.3 bits (196), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 38/212 (17%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
Y + +KS+D L+ +A+ AY L + +R VL
Sbjct: 32 TDYYVKHIIGVKSVDEFLANDK-------------IYNYAMKAYGLEDMIFAKGMIRKVL 78
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN-RKRS 475
SDP+ YA++ D R + AFNF+ G +T+ ++
Sbjct: 79 ----SDPE-YASQLVDKRYQQFAEAFNFSKYGEKATQRESAKTVTVNKYMQQTLEVEVGE 133
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
+++ + I + N+ Y ++L++K + + ++
Sbjct: 134 VNEGTRLALYFTRTIGGMVQNNVLTEKNWAY------------QILSDKALSAVIFKAFN 181
Query: 536 I------DSQKVREDFLC-EIFKSDLKDPKSF 560
I +V++ L + DL+DPK
Sbjct: 182 ISENVLTSPIEVQKSLLESRMSLKDLQDPKKL 213
>gi|319403954|emb|CBI77542.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 266
Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats.
Identities = 61/252 (24%), Positives = 110/252 (43%), Gaps = 22/252 (8%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S + + + ++M+Q + ++ E DYY +I + S ++ LAN +I N+ +++
Sbjct: 3 STYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDDFLANDKIYNYAMKAY 62
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + + ++ DP+ +A+ D RY++ +FNF +GE + Q
Sbjct: 63 GLEDMIFAKGMIRKVL----SDPE-YASQLVDKRYQQFAEAFNFSKYGEKAT------QR 111
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNI--------RNH-YEILGDSK 645
T + Y Q +E + E + LALYF RTI + +N Y+IL D
Sbjct: 112 ESAKTVTVNKYMQQTLEVEVGEVNEGTRLALYFTRTIGGMVQNNVLTEKNWAYQILSDKA 171
Query: 646 LFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSID-- 703
L V+ K +S P + +L+ + + D +D KK+E + AM
Sbjct: 172 LSAVIFKAFNISENVLTSPIEVQKSLLESRMSLKDLQDPKKLEHLIAKFSAMYDVQNQTV 231
Query: 704 YKKALFSSPNQN 715
AL N
Sbjct: 232 VNPALMILQGSN 243
Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 28/230 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + + D + F + + P V E YY + I + ++D+F+ + ++++YA+K
Sbjct: 1 MISTYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDDFLANDKIYNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL DM A+ I+K+L SDP+ +QL +YQ FA +++FS K Q +
Sbjct: 61 AYGLEDMIFAKGMIRKVL----SDPE-YASQLVDKRYQQFAEAFNFSKYGEKATQRESAK 115
Query: 120 KTIIQDYKQSHQHKEEVALEE----SKYFRKNIHKI---------NSVDQLFKDRRLLDY 166
+ Y Q E + E + YF + I + N Q+ D+ L
Sbjct: 116 TVTVNKYMQQTLEVEVGEVNEGTRLALYFTRTIGGMVQNNVLTEKNWAYQILSDKALSAV 175
Query: 167 VLQSFSITPKYISLP--FLKDVLTL-----GLANPKKYFIESRDNRFRAM 209
+ ++F+I+ ++ P K +L L +PKK E +F AM
Sbjct: 176 IFKAFNISENVLTSPIEVQKSLLESRMSLKDLQDPKKL--EHLIAKFSAM 223
Score = 92.2 bits (227), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 25/197 (12%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
I + +++ I + KQ+ ++ E+ Y+ K+I + SVD + ++ +Y +++
Sbjct: 2 ISTYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDDFLANDKIYNYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + + ++ VL ++P+ Y + D R++ AE F F G +
Sbjct: 62 YGLEDMIFAKGMIRKVL----SDPE-YASQLVDKRYQQFAEAFNFSKYGE----KATQRE 112
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSS---------FSDFLKDPKL 276
V+ Y T++ ++ Y+ I + L D L
Sbjct: 113 SAKTVTVNKYMQQTLEVEVGEVNEGTRLALYFTRTIGGMVQNNVLTEKNWAYQILSDKAL 172
Query: 277 FKMLQLSLFPLNPEITA 293
++ + +T+
Sbjct: 173 SAVIFKAFNISENVLTS 189
Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 38/212 (17%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
Y + +KS+D+ L+ +A+ AY L + +R VL
Sbjct: 32 TDYYVKHIIGVKSVDDFLANDK-------------IYNYAMKAYGLEDMIFAKGMIRKVL 78
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN-RKRS 475
SDP+ YA++ D R + AFNF+ G +T+ ++
Sbjct: 79 ----SDPE-YASQLVDKRYQQFAEAFNFSKYGEKATQRESAKTVTVNKYMQQTLEVEVGE 133
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
+++ + I + N+ Y ++L++K + + ++
Sbjct: 134 VNEGTRLALYFTRTIGGMVQNNVLTEKNWAY------------QILSDKALSAVIFKAFN 181
Query: 536 I------DSQKVREDFLC-EIFKSDLKDPKSF 560
I +V++ L + DL+DPK
Sbjct: 182 ISENVLTSPIEVQKSLLESRMSLKDLQDPKKL 213
>gi|114706759|ref|ZP_01439659.1| hypothetical protein FP2506_18124 [Fulvimarina pelagi HTCC2506]
gi|114537707|gb|EAU40831.1| hypothetical protein FP2506_18124 [Fulvimarina pelagi HTCC2506]
Length = 260
Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats.
Identities = 51/245 (20%), Positives = 98/245 (40%), Gaps = 10/245 (4%)
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
+ + + + + Y I I S +E LAN R+ + +++ G
Sbjct: 4 ASLSYRLISRDLPASLERTAQDPTVERASQRYLEEIGKISSIDEFLANDRVYRYAMKAMG 63
Query: 536 IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDN 595
++ + F+ ++ + + D ++FAN D+RYK+ +FNF+ +GE + Q
Sbjct: 64 LEDMTYAKAFMRKVMEEGIDDREAFANKLTDSRYKDFAETFNFNRYGEAALAFERTQQ-- 121
Query: 596 FHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLK 655
D Y Q +E+ + LALYF+R + ++Y +L D + KV+
Sbjct: 122 ----GIVDKYVRQTLEENTGTESEGARLALYFERKASTVTSYYGLLADPAILKVMQTAFS 177
Query: 656 LSPYFAVLPERKKIRILKKHI-KINDFKDSKKVEDFLYAAKAM---DHQSIDYKKALFSS 711
+ L K+ + +K + I D KD +KV + L + ++ L
Sbjct: 178 IPAETGTLDIDKQADLFRKALPNIEDLKDPQKVSELLQRFTTLWDVNNVQAAPTSPLLQL 237
Query: 712 PNQNK 716
Sbjct: 238 FGNGS 242
Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Query: 1 MIPSHVAPFP-SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ + ++ S+D+ + L ++DP V + Y E I IS+IDEF+ + R++ YA+
Sbjct: 1 MLDASLSYRLISRDLPASL-ERTAQDPTVERASQRYLEEIGKISSIDEFLANDRVYRYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS-DIQ 118
KA GL DM++A+ F++K++E + D ++ N+L +Y+ FA +++F+ + + +
Sbjct: 60 KAMGLEDMTYAKAFMRKVMEEGIDDREAFANKLTDSRYKDFAETFNFNRYGEAALAFERT 119
Query: 119 HKTIIQDYKQSHQHK----EEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSIT 174
+ I+ Y + + E + YF + + S L D +L + +FSI
Sbjct: 120 QQGIVDKYVRQTLEENTGTESEGARLALYFERKASTVTSYYGLLADPAILKVMQTAFSIP 179
Query: 175 PKYISLPFLKDV 186
+ +L K
Sbjct: 180 AETGTLDIDKQA 191
Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/187 (18%), Positives = 79/187 (42%), Gaps = 7/187 (3%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
++ S+ + + I KI+S+D+ + R+ Y +++ + + F++ V+
Sbjct: 20 ERTAQDPTVERASQRYLEEIGKISSIDEFLANDRVYRYAMKAMGLEDMTYAKAFMRKVME 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYF-NNTIDC 247
G+ + + + + D+R++ AE F F G + + ++K V NT
Sbjct: 80 EGIDDREAFANKLTDSRYKDFAETFNFNRYGEAALAFERTQQGIVDKYVRQTLEENTGTE 139
Query: 248 VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL------FPLNPEITADKFLTLMQ 301
Y++ ++V+S+ L DP + K++Q + L+ + AD F +
Sbjct: 140 SEGARLALYFERKASTVTSYYGLLADPAILKVMQTAFSIPAETGTLDIDKQADLFRKALP 199
Query: 302 ENDPIVS 308
+ +
Sbjct: 200 NIEDLKD 206
Score = 94.2 bits (232), Expect = 7e-17, Method: Composition-based stats.
Identities = 42/219 (19%), Positives = 69/219 (31%), Gaps = 41/219 (18%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
D ++ + Y +GKI SID L+ ++A+ A L
Sbjct: 22 TAQDPTVERASQRYLEEIGKISSIDEFLANDR-------------VYRYAMKAMGLEDMT 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R V+ D +++ANK D R FNFN G + + V
Sbjct: 69 YAKAFMRKVMEEGIDDREAFANKLTDSRYKDFAETFNFNRYGEAALAFERTQQGIVDKYV 128
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
+ E Y+ +T+ S+ LLA+ I
Sbjct: 129 RQTLEENTGT--------------------ESEGARLALYFERKASTVTSYYGLLADPAI 168
Query: 527 LNFLLESKGIDSQKVR------EDFLCEIF--KSDLKDP 557
L + + I ++ D + DLKDP
Sbjct: 169 LKVMQTAFSIPAETGTLDIDKQADLFRKALPNIEDLKDP 207
>gi|319898630|ref|YP_004158723.1| hypothetical protein BARCL_0458 [Bartonella clarridgeiae 73]
gi|319402594|emb|CBI76139.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 266
Score = 210 bits (533), Expect = 1e-51, Method: Composition-based stats.
Identities = 58/254 (22%), Positives = 113/254 (44%), Gaps = 24/254 (9%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S + + + ++M+Q + ++ E DYY +I + S ++ LAN ++ ++ +++
Sbjct: 3 STYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDDFLANDKVYSYAMKAY 62
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + + ++ DP+ +A+ D RY++ +FNF +GE + Q
Sbjct: 63 GLEDMIFAKGMIRKVL----SDPQ-YASQLVDKRYQQFAEAFNFSKYGEKAT------QR 111
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNI--------RNH-YEILGDSK 645
T + Y Q +E + + + LALYF RT+ + +N Y+IL D
Sbjct: 112 ESAKTVTVNKYMQQTLEVEAGQVNEGTRLALYFTRTVGGMVKDNILKEKNWAYQILSDKA 171
Query: 646 LFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM----DHQS 701
L VV K +S P + +L+ + + D +D KK+E + AM +
Sbjct: 172 LSAVVFKAFNISENVLTSPIESQKSLLESRMSLKDLQDPKKLEHLIAKFSAMYDVQNQTM 231
Query: 702 IDYKKALFSSPNQN 715
I+ + PN
Sbjct: 232 INPALMILQGPNMG 245
Score = 167 bits (423), Expect = 5e-39, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 28/230 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + + D + F + + P V E YY + I + ++D+F+ + +++SYA+K
Sbjct: 1 MISTYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDDFLANDKVYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL DM A+ I+K+L SDP+ +QL +YQ FA +++FS K Q +
Sbjct: 61 AYGLEDMIFAKGMIRKVL----SDPQ-YASQLVDKRYQQFAEAFNFSKYGEKATQRESAK 115
Query: 120 KTIIQDYKQSHQHKEEVALEE----SKYFRKNIHKI---------NSVDQLFKDRRLLDY 166
+ Y Q E + E + YF + + + N Q+ D+ L
Sbjct: 116 TVTVNKYMQQTLEVEAGQVNEGTRLALYFTRTVGGMVKDNILKEKNWAYQILSDKALSAV 175
Query: 167 VLQSFSITPKYIS------LPFLKDVLTL-GLANPKKYFIESRDNRFRAM 209
V ++F+I+ ++ L+ ++L L +PKK E +F AM
Sbjct: 176 VFKAFNISENVLTSPIESQKSLLESRMSLKDLQDPKKL--EHLIAKFSAM 223
Score = 90.7 bits (223), Expect = 7e-16, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 74/197 (37%), Gaps = 25/197 (12%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
I + +++ I + KQ+ ++ E+ Y+ K+I + SVD + ++ Y +++
Sbjct: 2 ISTYTSYRSTIDNMKQTFDRLFQKPQVKRETDYYVKHIIGVKSVDDFLANDKVYSYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + + ++ VL ++P+ Y + D R++ AE F F G +
Sbjct: 62 YGLEDMIFAKGMIRKVL----SDPQ-YASQLVDKRYQQFAEAFNFSKYGE----KATQRE 112
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSS---------FSDFLKDPKL 276
V+ Y T++ ++ Y+ + + L D L
Sbjct: 113 SAKTVTVNKYMQQTLEVEAGQVNEGTRLALYFTRTVGGMVKDNILKEKNWAYQILSDKAL 172
Query: 277 FKMLQLSLFPLNPEITA 293
++ + +T+
Sbjct: 173 SAVVFKAFNISENVLTS 189
Score = 80.3 bits (196), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 38/212 (17%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
Y + +KS+D+ L+ +A+ AY L + +R VL
Sbjct: 32 TDYYVKHIIGVKSVDDFLANDK-------------VYSYAMKAYGLEDMIFAKGMIRKVL 78
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN-RKRS 475
SDP YA++ D R + AFNF+ G +T+ ++
Sbjct: 79 ----SDPQ-YASQLVDKRYQQFAEAFNFSKYGEKATQRESAKTVTVNKYMQQTLEVEAGQ 133
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
+++ + + + N+ Y ++L++K + + ++
Sbjct: 134 VNEGTRLALYFTRTVGGMVKDNILKEKNWAY------------QILSDKALSAVVFKAFN 181
Query: 536 I------DSQKVREDFLC-EIFKSDLKDPKSF 560
I + ++ L + DL+DPK
Sbjct: 182 ISENVLTSPIESQKSLLESRMSLKDLQDPKKL 213
>gi|158424043|ref|YP_001525335.1| hypothetical protein AZC_2419 [Azorhizobium caulinodans ORS 571]
gi|158330932|dbj|BAF88417.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
Length = 325
Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats.
Identities = 55/254 (21%), Positives = 101/254 (39%), Gaps = 18/254 (7%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S + + + ++ Q+ E + +I +I S ++ + N R+ + +++
Sbjct: 74 STYLTYSYLSKNYDKALEQEATTGSTKLETANFEKSIGSITSVDDFVNNYRVFTYAMKAY 133
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + ++ ++ +SDL D SFAN+ D R+K +F +GE
Sbjct: 134 GLEDMAYAKAYMKKVLESDLTDDSSFANSLSDGRFKAFAQAFQSLTYGEAVSSDT----- 188
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
+ Y Q +E D + LALYFKR + + Y IL D L+KVV
Sbjct: 189 ---VSTVETKYAQQTMEDNAGASDTGVQLALYFKRNASTVTSAYSILADEALYKVVKATY 245
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQ 714
+ + + ++ KHI I + +D V+ L D + N
Sbjct: 246 NIPDEMSNAGIEAQAALISKHIDIEELQDPDYVDKLLKQFS----IKYDIEN------NS 295
Query: 715 NKDPWNNSFDDPQN 728
DP F+D +
Sbjct: 296 ASDPVLQLFNDTSS 309
Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/180 (22%), Positives = 88/180 (48%), Gaps = 3/180 (1%)
Query: 3 PSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAF 62
+++ K + E + + I I+++D+F+ + R+F+YA+KA+
Sbjct: 74 STYLTYSYLSKNYDKALEQEATTGSTKLETANFEKSIGSITSVDDFVNNYRVFTYAMKAY 133
Query: 63 GLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSD---IQH 119
GL DM++A+ ++KK+LESDL+D S N L+ +++ FA+++ + + SD
Sbjct: 134 GLEDMAYAKAYMKKVLESDLTDDSSFANSLSDGRFKAFAQAFQSLTYGEAVSSDTVSTVE 193
Query: 120 KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
Q + + + ++ + YF++N + S + D L V +++I + +
Sbjct: 194 TKYAQQTMEDNAGASDTGVQLALYFKRNASTVTSAYSILADEALYKVVKATYNIPDEMSN 253
Score = 114 bits (286), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/263 (15%), Positives = 104/263 (39%), Gaps = 31/263 (11%)
Query: 114 QSDIQHKTIIQDYKQSHQHKEEVALE--ESKYFRKNIHKINSVDQLFKDRRLLDYVLQSF 171
+ + + + ++Y ++ + + E+ F K+I I SVD + R+ Y ++++
Sbjct: 74 STYLTYSYLSKNYDKALEQEATTGSTKLETANFEKSIGSITSVDDFVNNYRVFTYAMKAY 133
Query: 172 SITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDM 231
+ + ++K VL L + + D RF+A A+ F+ G + ++
Sbjct: 134 GLEDMAYAKAYMKKVLESDLTDDSSFANSLSDGRFKAFAQAFQSLTYG------EAVSSD 187
Query: 232 QIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFP 286
+ + + Y T++ SD Y+K ++V+S L D L+K+++ + +
Sbjct: 188 TVSTVETKYAQQTMEDNAGASDTGVQLALYFKRNASTVTSAYSILADEALYKVVKAT-YN 246
Query: 287 LNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQ 346
+ E++ + + + I ++Q + K+L +
Sbjct: 247 IPDEMSNAGI-------EAQAALISKHIDI---------EELQDPDYVDKLLKQFSIKYD 290
Query: 347 ILHDDKMQSLIKDYQLPLGKIKS 369
I ++ +++ + + S
Sbjct: 291 IENNSASDPVLQLF-NDTSSVSS 312
Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/290 (16%), Positives = 94/290 (32%), Gaps = 49/290 (16%)
Query: 325 STKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPN 384
+ S + K D + K+++ +++ +G I S+D+ ++
Sbjct: 73 GSTYLTYSYLSKNYDKALEQEATTGSTKLETA--NFEKSIGSITSVDDFVNN-------- 122
Query: 385 SAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNF 444
+A+ AY L + ++ VL S+ +D S+AN D R AF
Sbjct: 123 -----YRVFTYAMKAYGLEDMAYAKAYMKKVLESDLTDDSSFANSLSDGRFKAFAQAFQS 177
Query: 445 NADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEV 504
G S T+ YA + +ME + +++
Sbjct: 178 LTYGE------AVSSDTVSTVETKYAQQ-------------TMEDNAGASDTGVQLA--- 215
Query: 505 DYYTLNINTIHSFEELLANKRILNFLLESKGI-DSQKVREDFLCEIFKS------DLKDP 557
Y+ N +T+ S +LA++ + + + I D S +L+DP
Sbjct: 216 LYFKRNASTVTSAYSILADEALYKVVKATYNIPDEMSNAGIEAQAALISKHIDIEELQDP 275
Query: 558 KSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKH 607
Y D K+ ++ + + + DT +
Sbjct: 276 D-----YVDKLLKQFSIKYDIENNSASDPVLQLFNDTSSVSSDTAGAILN 320
Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/264 (10%), Positives = 80/264 (30%), Gaps = 38/264 (14%)
Query: 220 SLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKM 279
++ LT + K + ++ +I S++S DF+ + ++F
Sbjct: 69 TIDLGSTYLTYSYLSKNYDKALEQEATTGSTKLETANFEKSIGSITSVDDFVNNYRVFTY 128
Query: 280 LQLSLFPLNPEITADKFLTLMQENDPIVSQV-------KYFFQINFHRDNSSSTKIQQDS 332
+ + L A ++ + E+D F + + +
Sbjct: 129 -AMKAYGLEDMAYAKAYMKKVLESDLTDDSSFANSLSDGRFKAFAQAFQSLTYGEAVSSD 187
Query: 333 QIQKMLDLYKKNC---QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEP 389
+ + Y + D L ++ + S ++L+ +
Sbjct: 188 TVSTVETKYAQQTMEDNAGASDTGVQLALYFKRNASTVTSAYSILADEA----------- 236
Query: 390 IITLQFALDAYNLNMQDLDRDQL--------RNVLTSNPSDPDSYANKSKDDRLIKLNHA 441
+ YN+ ++ + +++ DPD Y +K L + +
Sbjct: 237 --LYKVVKATYNI-PDEMSNAGIEAQAALISKHIDIEELQDPD-YVDKL----LKQFSIK 288
Query: 442 FNFNADGSIGPIPMMQSRLTIRDN 465
++ + + P+ + + + +
Sbjct: 289 YDIENNSASDPVLQLFNDTSSVSS 312
>gi|288962700|ref|YP_003452994.1| flagellar basal-body rod protein [Azospirillum sp. B510]
gi|288914966|dbj|BAI76450.1| flagellar basal-body rod protein [Azospirillum sp. B510]
Length = 263
Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 6/215 (2%)
Query: 483 SFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVR 542
+ + ++ R + + Y+ NI I S E+ + + ++ F+L++ + SQ
Sbjct: 10 ANKNHDRYDQAVRSRPAVQRAISYFQDNIGKITSTEDFMKDDKLYRFVLDAFDLGSQARS 69
Query: 543 EDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTC 602
+ ++ + + D S AN D++++E+ + F + + KK VQ
Sbjct: 70 RGLIRKVLEEGVGDKSSTANRMSDSKFREMATILGFAENQGDNLKKPAVVQ------AII 123
Query: 603 DLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAV 662
D Y +E + E+++P + L LYF+R NI N Y+++ D+ L KVV L L A+
Sbjct: 124 DRYVAVTLEVESEDRNPAVRLGLYFQRRSANISNWYQVMADNALRKVVYTALGLPEQTAL 183
Query: 663 LPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
L K+ +L+K + I D K KV L AM
Sbjct: 184 LDVDKQKALLEKRMDIADLKKPDKVAKLLDRFAAM 218
Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats.
Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 14/225 (6%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ + V + + V P V Y+++ I I++ ++F+KD +L+ + L A
Sbjct: 1 MTTLVDLRVANKNHDRYDQAVRSRPAVQRAISYFQDNIGKITSTEDFMKDDKLYRFVLDA 60
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFS-PPPKVIQSDIQHK 120
F L + + I+K+LE + D S N+++ K++ A F+ ++ +
Sbjct: 61 FDLGSQARSRGLIRKVLEEGVGDKSSTANRMSDSKFREMATILGFAENQGDNLKKPAVVQ 120
Query: 121 TIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
II Y E A+ YF++ I++ Q+ D L V + + +
Sbjct: 121 AIIDRYVAVTLEVESEDRNPAVRLGLYFQRRSANISNWYQVMADNALRKVVYTALGLPEQ 180
Query: 177 YI------SLPFLKDVLTL-GLANPKKYFIESRDNRFRAMAENFR 214
L+ + + L P K +RF AM +
Sbjct: 181 TALLDVDKQKALLEKRMDIADLKKPDKVAKLL--DRFAAMYDMRN 223
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 1/163 (0%)
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
D YF+ NI KI S + KD +L +VL +F + + S ++
Sbjct: 15 DRYDQAVRSRPAVQRAISYFQDNIGKITSTEDFMKDDKLYRFVLDAFDLGSQARSRGLIR 74
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFN-N 243
VL G+ + D++FR MA F + + + + I++ V+
Sbjct: 75 KVLEEGVGDKSSTANRMSDSKFREMATILGFAENQGDNLKKPAVVQAIIDRYVAVTLEVE 134
Query: 244 TIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFP 286
+ D P V Y++ ++S++ + D L K++ +L
Sbjct: 135 SEDRNPAVRLGLYFQRRSANISNWYQVMADNALRKVVYTALGL 177
Score = 78.8 bits (192), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 42/264 (15%)
Query: 345 CQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNM 404
+ +Q I +Q +GKI S ++ + +F LDA++L
Sbjct: 19 QAVRSRPAVQRAISYFQDNIGKITSTEDFMKDDK-------------LYRFVLDAFDLGS 65
Query: 405 QDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRD 464
Q R +R VL D S AN+ D + ++ F + + I
Sbjct: 66 QARSRGLIRKVLEEGVGDKSSTANRMSDSKFREMATILGFAENQGDNLKKPAVVQAIIDR 125
Query: 465 NVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANK 524
V + + Y+ I ++ +++A+
Sbjct: 126 YVAVTLEVESEDRNPA--------------------VRLGLYFQRRSANISNWYQVMADN 165
Query: 525 RILNFLLESKGIDSQKV------REDFLCEIFK-SDLKDPKSFANTYKDNRYKEIISSFN 577
+ + + G+ Q ++ L + +DLK P A +R+ + N
Sbjct: 166 ALRKVVYTALGLPEQTALLDVDKQKALLEKRMDIADLKKPDKVAKLL--DRFAAMYDMRN 223
Query: 578 FDIHGELSHKKIGKVQDNFHIDDT 601
D + IG V
Sbjct: 224 GDAAAAAAIPSIGPVSRRGRASII 247
>gi|319405395|emb|CBI79014.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 266
Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats.
Identities = 60/272 (22%), Positives = 114/272 (41%), Gaps = 20/272 (7%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S + + + ++M+Q + ++ E DYY +I + S ++ LAN +I N+ +++
Sbjct: 3 STYTSYRSTIDNMKQTFDRLFKKPQVKHETDYYVKHIIGVKSVDDFLANDKIYNYAMKAY 62
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + + ++ DP+ +A D RY++ +FNF +GE + Q
Sbjct: 63 GLEDMIFAKGMIRKVL----SDPQ-YAAQLVDKRYQQFAEAFNFSKYGEKTT------QR 111
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNI--------RNH-YEILGDSK 645
T + Y Q +E + + + LALYF RT+ + +N Y+IL D
Sbjct: 112 ESAKTITVNKYIQQTLEVEAGQVNEGTRLALYFTRTVGGMVKDNILTEKNWAYQILSDKA 171
Query: 646 LFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYK 705
L V+ K +S P + +L+ + + D +D KK+E + AM
Sbjct: 172 LSAVIFKAFNISENVLTSPIEAQKSLLESRMSLKDLQDPKKLEHLIAKFSAMYDVQNQTV 231
Query: 706 KALFSSPNQNKDPWNNSFDDPQNNVSLQLSPQ 737
Q + + ++LQ Q
Sbjct: 232 VNPALMILQGSNVGRGLTFSNETIMALQFFKQ 263
Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats.
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 28/230 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + + D + F + K P V E YY + I + ++D+F+ + ++++YA+K
Sbjct: 1 MISTYTSYRSTIDNMKQTFDRLFKKPQVKHETDYYVKHIIGVKSVDDFLANDKIYNYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A+GL DM A+ I+K+L SDP+ QL +YQ FA +++FS K Q +
Sbjct: 61 AYGLEDMIFAKGMIRKVL----SDPQ-YAAQLVDKRYQQFAEAFNFSKYGEKTTQRESAK 115
Query: 120 KTIIQDYKQSHQHKEEVALEE----SKYFRKNIHKI---------NSVDQLFKDRRLLDY 166
+ Y Q E + E + YF + + + N Q+ D+ L
Sbjct: 116 TITVNKYIQQTLEVEAGQVNEGTRLALYFTRTVGGMVKDNILTEKNWAYQILSDKALSAV 175
Query: 167 VLQSFSITPKYIS------LPFLKDVLTL-GLANPKKYFIESRDNRFRAM 209
+ ++F+I+ ++ L+ ++L L +PKK E +F AM
Sbjct: 176 IFKAFNISENVLTSPIEAQKSLLESRMSLKDLQDPKKL--EHLIAKFSAM 223
Score = 91.1 bits (224), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 76/197 (38%), Gaps = 25/197 (12%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
I + +++ I + KQ+ K+ E+ Y+ K+I + SVD + ++ +Y +++
Sbjct: 2 ISTYTSYRSTIDNMKQTFDRLFKKPQVKHETDYYVKHIIGVKSVDDFLANDKIYNYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + + ++ VL ++P+ Y + D R++ AE F F G + +
Sbjct: 62 YGLEDMIFAKGMIRKVL----SDPQ-YAAQLVDKRYQQFAEAFNFSKYGEKTT----QRE 112
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSS---------FSDFLKDPKL 276
V+ Y T++ ++ Y+ + + L D L
Sbjct: 113 SAKTITVNKYIQQTLEVEAGQVNEGTRLALYFTRTVGGMVKDNILTEKNWAYQILSDKAL 172
Query: 277 FKMLQLSLFPLNPEITA 293
++ + +T+
Sbjct: 173 SAVIFKAFNISENVLTS 189
Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 38/212 (17%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
Y + +KS+D+ L+ +A+ AY L + +R VL
Sbjct: 32 TDYYVKHIIGVKSVDDFLANDK-------------IYNYAMKAYGLEDMIFAKGMIRKVL 78
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN-RKRS 475
SDP YA + D R + AFNF+ G +T+ ++
Sbjct: 79 ----SDPQ-YAAQLVDKRYQQFAEAFNFSKYGEKTTQRESAKTITVNKYIQQTLEVEAGQ 133
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
+++ + + + N+ Y ++L++K + + ++
Sbjct: 134 VNEGTRLALYFTRTVGGMVKDNILTEKNWAY------------QILSDKALSAVIFKAFN 181
Query: 536 IDSQKVRE--DFLCEIFKS-----DLKDPKSF 560
I + + + +S DL+DPK
Sbjct: 182 ISENVLTSPIEAQKSLLESRMSLKDLQDPKKL 213
>gi|182679721|ref|YP_001833867.1| hypothetical protein Bind_2809 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182635604|gb|ACB96378.1| protein of unknown function DUF1217 [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 259
Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats.
Identities = 55/255 (21%), Positives = 100/255 (39%), Gaps = 13/255 (5%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
+ N + + ++ E YY NI+ + + + L N R+ + +++
Sbjct: 3 TTALYYNMTVRDYTKTLATTASEPSVSRESKYYLDNISKVTTIDGFLNNNRLFTYAMKAF 62
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G+ + + +I + DP++ ANT D+RYK + +F+F G + Q+
Sbjct: 63 GLGDMVYAKGMVRQILQQGTSDPRALANTLNDSRYKALAQTFDFANLGANATSTTTAGQN 122
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
D Y +E + P +ALY KR P I + Y IL D L ++V
Sbjct: 123 ------VVDKYVEMQLEDNVGKNSPGAEMALYLKRVAPTITSAYSILADKTLLQIVQTTF 176
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM-------DHQSIDYKKA 707
L + L + +++ +KI+D +D K++ F AM S
Sbjct: 177 NLPSSMSALDIDVQAKMINSKMKISDLQDPTKLQTFTNRFIAMYDINNPNTGPSTPTNAL 236
Query: 708 LFSSPNQNKDPWNNS 722
L S + D +
Sbjct: 237 LAQSSGLSSDLLMSL 251
Score = 160 bits (405), Expect = 6e-37, Method: Composition-based stats.
Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 14/237 (5%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M+ + + + +K +T + +P VS E +YY + I ++TID F+ + RLF+YA+K
Sbjct: 1 MLTTALYYNMTVRDYTKTLATTASEPSVSRESKYYLDNISKVTTIDGFLNNNRLFTYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
AFGL DM +A+ +++IL+ SDP++L N LN +Y+ A+++DF+ +
Sbjct: 61 AFGLGDMVYAKGMVRQILQQGTSDPRALANTLNDSRYKALAQTFDFANLGANATSTTTAG 120
Query: 120 KTIIQDYK----QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ ++ Y + + K E + Y ++ I S + D+ LL V +F++
Sbjct: 121 QNVVDKYVEMQLEDNVGKNSPGAEMALYLKRVAPTITSAYSILADKTLLQIVQTTFNLPS 180
Query: 176 KYISLP-------FLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRD 225
+L + L +P K ++ NRF AM + S
Sbjct: 181 SMSALDIDVQAKMINSKMKISDLQDPTKL--QTFTNRFIAMYDINNPNTGPSTPTNA 235
Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats.
Identities = 44/257 (17%), Positives = 95/257 (36%), Gaps = 16/257 (6%)
Query: 113 IQSDIQHKTIIQDYKQS--HQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
+ + + + ++DY ++ E ESKY+ NI K+ ++D + RL Y +++
Sbjct: 2 LTTALYYNMTVRDYTKTLATTASEPSVSRESKYYLDNISKVTTIDGFLNNNRLFTYAMKA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
F + + ++ +L G ++P+ D+R++A+A+ F F G+ +
Sbjct: 62 FGLGDMVYAKGMVRQILQQGTSDPRALANTLNDSRYKALAQTFDFANLGANATSTTTAGQ 121
Query: 231 MQIEKIVSNYFNNTI-DCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNP 289
++K V + + P Y K +++S L D L +++Q + +
Sbjct: 122 NVVDKYVEMQLEDNVGKNSPGAEMALYLKRVAPTITSAYSILADKTLLQIVQTTFNLPSS 181
Query: 290 EITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILH 349
D + N + D TK+Q + + +Y N
Sbjct: 182 MSALDIDVQAKMINSKMKI-----------SDLQDPTKLQTF--TNRFIAMYDINNPNTG 228
Query: 350 DDKMQSLIKDYQLPLGK 366
+ + L
Sbjct: 229 PSTPTNALLAQSSGLSS 245
Score = 78.8 bits (192), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/277 (16%), Positives = 82/277 (29%), Gaps = 44/277 (15%)
Query: 336 KMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQF 395
+ D K + + K Y + K+ +ID L+ +
Sbjct: 11 TVRDYTKTLATTASEPSVSRESKYYLDNISKVTTIDGFLNNNR-------------LFTY 57
Query: 396 ALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPM 455
A+ A+ L + +R +L SDP + AN D R L F+F G+
Sbjct: 58 AMKAFGLGDMVYAKGMVRQILQQGTSDPRALANTLNDSRYKALAQTFDFANLGANATSTT 117
Query: 456 MQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNIN-TI 514
+ + V+ + +E+ Y + TI
Sbjct: 118 TAGQNVVDKYVEMQLEDNVGKNSP---------------------GAEMALYLKRVAPTI 156
Query: 515 HSFEELLANKRILNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPKSFANTYKDN 567
S +LA+K +L + + +D + ++ SDL+DP N
Sbjct: 157 TSAYSILADKTLLQIVQTTFNLPSSMSALDIDVQAKMINSKMKISDLQDPTKL--QTFTN 214
Query: 568 RYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
R+ + N + + D L
Sbjct: 215 RFIAMYDINNPNTGPSTPTNALLAQSSGLSSDLLMSL 251
>gi|27381994|ref|NP_773523.1| hypothetical protein blr6883 [Bradyrhizobium japonicum USDA 110]
gi|27355164|dbj|BAC52148.1| blr6883 [Bradyrhizobium japonicum USDA 110]
Length = 270
Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats.
Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 6/223 (2%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
S + + + TQ +++ E DY+ +I + + ++ L + R+ + +++
Sbjct: 11 STIADYTRLTKDLGKSMTQVATQPDVSRETDYFLSHIGNVKTIDDFLKDYRLYTYAMKAY 70
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G+ + F+ ++ + + +FAN D RY+E ++FNF G+ + +
Sbjct: 71 GLSDMTYAKAFMRKVLTEGVSNKDAFANKLTDARYREFATAFNFAALGDKATQTTAATTG 130
Query: 595 NFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKL 654
Y Q +E+K +++ + LALYF R I N Y+IL D L +VV +
Sbjct: 131 TATQ------YVTQTMEQKAGDQNEGLRLALYFTRKASTITNAYQILADKALTQVVQTAM 184
Query: 655 KLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
S + + +++ I + DF+D KV F+ AM
Sbjct: 185 GWSSTISSSDIDAQAKMITDKIDLTDFQDPTKVTKFVQRFAAM 227
Score = 161 bits (406), Expect = 5e-37, Method: Composition-based stats.
Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 16/235 (6%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M+ + +KD+ K + V+ P VS E Y+ I ++ TID+F+KD RL++YA+
Sbjct: 9 MLSTIADYTRLTKDL-GKSMTQVATQPDVSRETDYFLSHIGNVKTIDDFLKDYRLYTYAM 67
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPK-----VIQ 114
KA+GLSDM++A+ F++K+L +S+ + N+L +Y+ FA +++F+
Sbjct: 68 KAYGLSDMTYAKAFMRKVLTEGVSNKDAFANKLTDARYREFATAFNFAALGDKATQTTAA 127
Query: 115 SDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSIT 174
+ + + + L + YF + I + Q+ D+ L V + +
Sbjct: 128 TTGTATQYVTQTMEQKAGDQNEGLRLALYFTRKASTITNAYQILADKALTQVVQTAMGWS 187
Query: 175 PKYI-------SLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLS 222
+ + +P K RF AM + + Q D S +
Sbjct: 188 STISSSDIDAQAKMITDKIDLTDFQDPTKV--TKFVQRFAAMWDATQAQSDNSTN 240
Score = 114 bits (284), Expect = 6e-23, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 73/177 (41%), Gaps = 1/177 (0%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
+ + E+ YF +I + ++D KD RL Y ++++ ++ + F++ VLT
Sbjct: 28 TQVATQPDVSRETDYFLSHIGNVKTIDDFLKDYRLYTYAMKAYGLSDMTYAKAFMRKVLT 87
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI-DC 247
G++N + + D R+R A F F G + + T + V+ D
Sbjct: 88 EGVSNKDAFANKLTDARYREFATAFNFAALGDKATQTTAATTGTATQYVTQTMEQKAGDQ 147
Query: 248 VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQEND 304
+ Y+ +++++ L D L +++Q ++ + ++D D
Sbjct: 148 NEGLRLALYFTRKASTITNAYQILADKALTQVVQTAMGWSSTISSSDIDAQAKMITD 204
Score = 88.8 bits (218), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 33/199 (16%)
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFA 396
DL K Q+ + + +G +K+ID+ L +A
Sbjct: 20 TKDLGKSMTQVATQPDVSRETDYFLSHIGNVKTIDDFLKD-------------YRLYTYA 66
Query: 397 LDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM 456
+ AY L+ + +R VLT S+ D++ANK D R + AFNF A G
Sbjct: 67 MKAYGLSDMTYAKAFMRKVLTEGVSNKDAFANKLTDARYREFATAFNFAALGDKATQTTA 126
Query: 457 QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
+ T V +K E Y+T +TI +
Sbjct: 127 ATTGTATQYVTQTMEQK--------------------AGDQNEGLRLALYFTRKASTITN 166
Query: 517 FEELLANKRILNFLLESKG 535
++LA+K + + + G
Sbjct: 167 AYQILADKALTQVVQTAMG 185
Score = 42.5 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 24/185 (12%), Positives = 57/185 (30%), Gaps = 15/185 (8%)
Query: 215 FQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDP 274
G+ I ++ K + + + +Y+ I +V + DFLKD
Sbjct: 1 MATRGARVMLSTIADYTRLTKDLGKSMTQVATQPDVSRETDYFLSHIGNVKTIDDFLKDY 60
Query: 275 KLFKMLQLSLFPLNPEITADKFLTLMQE-------------NDPIVSQVKYFFQINFHRD 321
+L+ + + L+ A F+ + D + F D
Sbjct: 61 RLYTY-AMKAYGLSDMTYAKAFMRKVLTEGVSNKDAFANKLTDARYREFATAFNFAALGD 119
Query: 322 NSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLE 381
++ T + + + ++ ++ L + I + +L+ K +
Sbjct: 120 KATQTTAATTGTATQYVTQTMEQKAGDQNEGLR-LALYFTRKASTITNAYQILADKALTQ 178
Query: 382 GPNSA 386
+A
Sbjct: 179 VVQTA 183
>gi|217977818|ref|YP_002361965.1| protein of unknown function DUF1217 [Methylocella silvestris BL2]
gi|217503194|gb|ACK50603.1| protein of unknown function DUF1217 [Methylocella silvestris BL2]
Length = 259
Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats.
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 6/212 (2%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ + E YY NI + S ++L+ N+R+ ++L++ G+ +
Sbjct: 14 DFSKSLATAASDTVAKRETAYYEANIGKVKSVDDLMKNQRLYAYVLKAYGLSDMAYAKGL 73
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ SD+ D S ANT RYK + +++NF G + T D Y
Sbjct: 74 IRKVLTSDVTDGASLANTLSGGRYKALAAAYNFSAKGAVGT------ISAEAQKTTKDNY 127
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
Q +E +++ +ALYFKR P +++ Y IL D L VV LS +
Sbjct: 128 VEQTLEANVGKQNDGAKMALYFKRIAPTVKSAYGILADKTLLGVVQTAFGLSASMSQQNI 187
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
+ + + KI D ++ K++ + A
Sbjct: 188 DVQAKTINALFKIGDLQNPAKLQKLIQRFTAN 219
Score = 154 bits (388), Expect = 6e-35, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 3 PSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAF 62
+ ++D SK +T + D + E YY I + ++D+ +K++RL++Y LKA+
Sbjct: 4 STLYYTMLTRDF-SKSLATAASDTVAKRETAYYEANIGKVKSVDDLMKNQRLYAYVLKAY 62
Query: 63 GLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQ-----SDI 117
GLSDM++A+ I+K+L SD++D SL N L+ +Y+ A +Y+FS V
Sbjct: 63 GLSDMAYAKGLIRKVLTSDVTDGASLANTLSGGRYKALAAAYNFSAKGAVGTISAEAQKT 122
Query: 118 QHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ +++ K+ + + YF++ + S + D+ LL V +F ++
Sbjct: 123 TKDNYVEQTLEANVGKQNDGAKMALYFKRIAPTVKSAYGILADKTLLGVVQTAFGLSAS 181
Score = 118 bits (294), Expect = 4e-24, Method: Composition-based stats.
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 130 HQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTL 189
+ VA E+ Y+ NI K+ SVD L K++RL YVL+++ ++ + ++ VLT
Sbjct: 21 TAASDTVAKRETAYYEANIGKVKSVDDLMKNQRLYAYVLKAYGLSDMAYAKGLIRKVLTS 80
Query: 190 GLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVP 249
+ + R++A+A + F G++ ++ + NY T++
Sbjct: 81 DVTDGASLANTLSGGRYKALAAAYNFSAKGAVGT----ISAEAQKTTKDNYVEQTLEANV 136
Query: 250 IVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPE 290
+ Y+K +V S L D L ++Q +
Sbjct: 137 GKQNDGAKMALYFKRIAPTVKSAYGILADKTLLGVVQTAFGLSASM 182
Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/198 (20%), Positives = 73/198 (36%), Gaps = 34/198 (17%)
Query: 341 YKKNCQILHDDKMQS-LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA 399
+ K+ D + Y+ +GK+KS+D+L+ + + L A
Sbjct: 15 FSKSLATAASDTVAKRETAYYEANIGKVKSVDDLMKNQR-------------LYAYVLKA 61
Query: 400 YNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSR 459
Y L+ + +R VLTS+ +D S AN R L A+NF+A G++G I +
Sbjct: 62 YGLSDMAYAKGLIRKVLTSDVTDGASLANTLSGGRYKALAAAYNFSAKGAVGTISAEAQK 121
Query: 460 LTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEE 519
T + V+ + Y+ T+ S
Sbjct: 122 TTKDNYVEQTLE--------------------ANVGKQNDGAKMALYFKRIAPTVKSAYG 161
Query: 520 LLANKRILNFLLESKGID 537
+LA+K +L + + G+
Sbjct: 162 ILADKTLLGVVQTAFGLS 179
Score = 45.6 bits (106), Expect = 0.035, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 13/166 (7%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ + S + YY+ I V S D +K+ +L+ + L + L+
Sbjct: 11 LTRDFSKSLATAASDTVAKRETAYYEANIGKVKSVDDLMKNQRLYAYV-LKAYGLSDMAY 69
Query: 293 ADKFLTLMQENDPIVSQV-----------KYFFQINFHRDNSSSTKIQQDSQIQKMLDLY 341
A + + +D NF + T + + K +
Sbjct: 70 AKGLIRKVLTSDVTDGASLANTLSGGRYKALAAAYNFSAKGAVGTISAEAQKTTKDNYVE 129
Query: 342 KK-NCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSA 386
+ + + + ++ +KS +L+ K L +A
Sbjct: 130 QTLEANVGKQNDGAKMALYFKRIAPTVKSAYGILADKTLLGVVQTA 175
>gi|121601650|ref|YP_989406.1| hypothetical protein BARBAKC583_1147 [Bartonella bacilliformis
KC583]
gi|120613827|gb|ABM44428.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
Length = 264
Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats.
Identities = 57/251 (22%), Positives = 113/251 (45%), Gaps = 20/251 (7%)
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
+ + + ++M++ + ++ E DYY NI ++ S +E LAN ++ + +++ G
Sbjct: 4 TYTSYRSTIDNMKKTLDRLLKEPQVKRETDYYVRNIASVQSVDEFLANDKLYRYAMQAHG 63
Query: 536 IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDN 595
++ + + ++ DP+ +A+ D RY++ ++FNF+++GE + Q N
Sbjct: 64 LEDMIYAKGMMRKVLL----DPR-YASQLSDQRYQQFAAAFNFNLYGEKAT------QQN 112
Query: 596 FHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIR--------NH-YEILGDSKL 646
T + Y Q +E + + + LALYF RT+ + N Y+ILGD L
Sbjct: 113 SAQTATVNKYMQQTLEVQVGQDNEGARLALYFTRTVGGMARDGLLSEKNWAYQILGDKAL 172
Query: 647 FKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKK 706
VV L + + + +L+ + + D KD K++E F+ A+ +
Sbjct: 173 SAVVFTALDIPENVRLSKIEAQKSLLESRMSLKDLKDPKRLEHFIAQFSALYDAKNQEEI 232
Query: 707 ALFSSPNQNKD 717
QN
Sbjct: 233 NPALMILQNSS 243
Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 101/235 (42%), Gaps = 28/235 (11%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI ++ + + D K + K+P V E YY I + ++DEF+ + +L+ YA++
Sbjct: 1 MIGTYTSYRSTIDNMKKTLDRLLKEPQVKRETDYYVRNIASVQSVDEFLANDKLYRYAMQ 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP-PPKVIQSDIQH 119
A GL DM +A+ ++K+L DP+ +QL+ +YQ FA +++F+ K Q +
Sbjct: 61 AHGLEDMIYAKGMMRKVL----LDPR-YASQLSDQRYQQFAAAFNFNLYGEKATQQNSAQ 115
Query: 120 KTIIQDYKQSHQH----KEEVALEESKYFRKNIHKI---------NSVDQLFKDRRLLDY 166
+ Y Q ++ + YF + + + N Q+ D+ L
Sbjct: 116 TATVNKYMQQTLEVQVGQDNEGARLALYFTRTVGGMARDGLLSEKNWAYQILGDKALSAV 175
Query: 167 VLQSFSITPKY------ISLPFLKDVLTL-GLANPKKYFIESRDNRFRAMAENFR 214
V + I L+ ++L L +PK+ E +F A+ +
Sbjct: 176 VFTALDIPENVRLSKIEAQKSLLESRMSLKDLKDPKRL--EHFIAQFSALYDAKN 228
Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 68/184 (36%), Gaps = 17/184 (9%)
Query: 113 IQSDIQHKTIIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
I + +++ I + K++ KE E+ Y+ +NI + SVD+ + +L Y +Q+
Sbjct: 2 IGTYTSYRSTIDNMKKTLDRLLKEPQVKRETDYYVRNIASVQSVDEFLANDKLYRYAMQA 61
Query: 171 FSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ + ++ VL +P+ Y + D R++ A F F G + +
Sbjct: 62 HGLEDMIYAKGMMRKVLL----DPR-YASQLSDQRYQQFAAAFNFNLYGEKATQQNSAQT 116
Query: 231 MQIEKIVSNYFNNTIDCV-PIVSDQNYYKLAINSVSS---------FSDFLKDPKLFKML 280
+ K + + Y+ + ++ L D L ++
Sbjct: 117 ATVNKYMQQTLEVQVGQDNEGARLALYFTRTVGGMARDGLLSEKNWAYQILGDKALSAVV 176
Query: 281 QLSL 284
+L
Sbjct: 177 FTAL 180
Score = 74.1 bits (180), Expect = 9e-11, Method: Composition-based stats.
Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 46/264 (17%)
Query: 322 NSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLE 381
+ ++ ++K LD K Q+ + Y + ++S+D L+
Sbjct: 3 GTYTSYRSTIDNMKKTLDRLLKEPQVKRET------DYYVRNIASVQSVDEFLANDK--- 53
Query: 382 GPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHA 441
++A+ A+ L + +R VL DP YA++ D R + A
Sbjct: 54 ----------LYRYAMQAHGLEDMIYAKGMMRKVL----LDPR-YASQLSDQRYQQFAAA 98
Query: 442 FNFNADGSIGPIPMMQSRLTIRDNVKHYAN-RKRSIHDAENKSFNSMEQISTQKRINLEI 500
FNFN G T+ ++ + ++ + + R L
Sbjct: 99 FNFNLYGEKATQQNSAQTATVNKYMQQTLEVQVGQDNEGARLALYFTRTVGGMARDGLLS 158
Query: 501 NSEVDYYTLNINTIHSFEELLANKRILNFLLESKGI-DSQKVREDFLCEIFKS------D 553
Y ++L +K + + + I ++ ++ + + D
Sbjct: 159 EKNWAY------------QILGDKALSAVVFTALDIPENVRLSKIEAQKSLLESRMSLKD 206
Query: 554 LKDPKSFANTYKDNRYKEIISSFN 577
LKDPK + ++ + + N
Sbjct: 207 LKDPKRLEHFIA--QFSALYDAKN 228
Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 17/199 (8%)
Query: 239 NYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLT 298
+ + + + +YY I SV S +FL + KL++ + L I A +
Sbjct: 17 KTLDRLLKEPQVKRETDYYVRNIASVQSVDEFLANDKLYRY-AMQAHGLEDMIYAKGMMR 75
Query: 299 LMQENDPIVSQV------KYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNC---QILH 349
+ + SQ+ ++ NF+ +T QQ+S ++ Y + Q+
Sbjct: 76 KVLLDPRYASQLSDQRYQQFAAAFNFNLYGEKAT--QQNSAQTATVNKYMQQTLEVQVGQ 133
Query: 350 DDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDA---YNLNMQD 406
D++ L + +G + D LLS K + + ALD L+ +
Sbjct: 134 DNEGARLALYFTRTVGGMAR-DGLLSEKNWAYQILGDKALSAVVFTALDIPENVRLSKIE 192
Query: 407 LDRDQLR-NVLTSNPSDPD 424
+ L + + DP
Sbjct: 193 AQKSLLESRMSLKDLKDPK 211
>gi|296444947|ref|ZP_06886909.1| protein of unknown function DUF1217 [Methylosinus trichosporium
OB3b]
gi|296257615|gb|EFH04680.1| protein of unknown function DUF1217 [Methylosinus trichosporium
OB3b]
Length = 266
Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats.
Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 6/213 (2%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
N+ + ++ ++ Y+ NI + S ++ + N R+ N+ + + G+ +
Sbjct: 12 NNQSLWQSMTAKQPDVATQTQYFEDNIGKVQSVDDFMKNDRLFNYAMTAFGLGDMTYAKG 71
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
+ ++ + + D + ANT + K ++F+F +G + + +D+
Sbjct: 72 MMQKVLEQGVSDNSALANTLNNANIKAFATAFDFADNGASTTS------SSTLVDNVVSR 125
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +E + +++P + LALYF+R P+I + Y IL DSK+ VV L +S
Sbjct: 126 YAEQSLEDNQGQQNPGVQLALYFQRNAPSITSVYGILADSKILSVVQTALGISTQTTSQS 185
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
+ +L + I DF+D KK++ F+ AM
Sbjct: 186 IDSQAAMLTSKLDITDFQDPKKLQQFISRFAAM 218
Score = 160 bits (404), Expect = 8e-37, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 7/231 (3%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ + + QS S +K P V+ + +Y+ + I + ++D+F+K+ RLF+YA+ A
Sbjct: 1 MTTLSTYLQIANNQSLWQSMTAKQPDVATQTQYFEDNIGKVQSVDDFMKNDRLFNYAMTA 60
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS-----D 116
FGL DM++A+ ++K+LE +SD +L N LN+ + FA ++DF+ S D
Sbjct: 61 FGLGDMTYAKGMMQKVLEQGVSDNSALANTLNNANIKAFATAFDFADNGASTTSSSTLVD 120
Query: 117 IQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
+ + +Q ++ ++ + YF++N I SV + D ++L V + I+ +
Sbjct: 121 NVVSRYAEQSLEDNQGQQNPGVQLALYFQRNAPSITSVYGILADSKILSVVQTALGISTQ 180
Query: 177 YISLPFLKD--VLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRD 225
S +LT L + A + + GS +
Sbjct: 181 TTSQSIDSQAAMLTSKLDITDFQDPKKLQQFISRFAAMYDYNNSGSDANSQ 231
Score = 114 bits (285), Expect = 5e-23, Method: Composition-based stats.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 128 QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVL 187
QS K+ +++YF NI K+ SVD K+ RL +Y + +F + + ++ VL
Sbjct: 18 QSMTAKQPDVATQTQYFEDNIGKVQSVDDFMKNDRLFNYAMTAFGLGDMTYAKGMMQKVL 77
Query: 188 TLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFN-NTID 246
G+++ + +A A F F +G+ + L D + + N
Sbjct: 78 EQGVSDNSALANTLNNANIKAFATAFDFADNGASTTSSSTLVDNVVSRYAEQSLEDNQGQ 137
Query: 247 CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
P V Y++ S++S L D K+ ++Q +L +
Sbjct: 138 QNPGVQLALYFQRNAPSITSVYGILADSKILSVVQTALGISTQTTS 183
Score = 84.1 bits (206), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/201 (17%), Positives = 76/201 (37%), Gaps = 33/201 (16%)
Query: 344 NCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLN 403
+ + + ++ +GK++S+D+ + +A+ A+ L
Sbjct: 18 QSMTAKQPDVATQTQYFEDNIGKVQSVDDFMKNDR-------------LFNYAMTAFGLG 64
Query: 404 MQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIR 463
+ ++ VL SD + AN + + AF+F +G+ S +
Sbjct: 65 DMTYAKGMMQKVLEQGVSDNSALANTLNNANIKAFATAFDFADNGASTT----SSSTLVD 120
Query: 464 DNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLAN 523
+ V YA + S+E Q+ +++ Y+ N +I S +LA+
Sbjct: 121 NVVSRYAEQ-------------SLEDNQGQQNPGVQLA---LYFQRNAPSITSVYGILAD 164
Query: 524 KRILNFLLESKGIDSQKVRED 544
+IL+ + + GI +Q +
Sbjct: 165 SKILSVVQTALGISTQTTSQS 185
Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 13/174 (7%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
+ T +QI S + + T + + Y++ I V S DF+K+ +LF +
Sbjct: 2 TTLSTYLQIANNQSLWQSMTAKQPDVATQTQYFEDNIGKVQSVDDFMKNDRLFNYAMTA- 60
Query: 285 FPLNPEITADKFLTLMQENDPIVSQVKY---------FFQINFHRDNSSSTKIQQDSQIQ 335
F L A + + E + F F ++ ++ + +
Sbjct: 61 FGLGDMTYAKGMMQKVLEQGVSDNSALANTLNNANIKAFATAFDFADNGASTTSSSTLVD 120
Query: 336 KMLDLYKKNC---QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSA 386
++ Y + + L +Q I S+ +L+ L +A
Sbjct: 121 NVVSRYAEQSLEDNQGQQNPGVQLALYFQRNAPSITSVYGILADSKILSVVQTA 174
>gi|323139683|ref|ZP_08074724.1| protein of unknown function DUF1217 [Methylocystis sp. ATCC 49242]
gi|322395062|gb|EFX97622.1| protein of unknown function DUF1217 [Methylocystis sp. ATCC 49242]
Length = 266
Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats.
Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 7/219 (3%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
N + + + ++ E Y+ NI S E L ++R+ N+ +++ G+ +
Sbjct: 12 NDLGRWRSITAKAPDVALETKYFKENIGKATSIEAFLKDRRLFNYAMKAFGLGDRTFAIG 71
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
+ ++ + + DPK+ A T + +F+F G V I D
Sbjct: 72 LMRKVMEQGVDDPKALARTLNNPNILAFAKAFDFSAKGA-------GVPSATLIQDVTAR 124
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
+ Q ++ ++ +++P + LALYF+ P + + Y +L D KL +VV L +SP +
Sbjct: 125 FVEQAMQAEQGKRNPGVELALYFREKAPGLTSIYGVLADKKLVQVVQTALDISPRTSAQN 184
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSID 703
+ R+LK + + DFKD KK+ F+ AM
Sbjct: 185 IDTQARLLKAKVNVEDFKDPKKLTAFIARFSAMYDMQNQ 223
Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 116/240 (48%), Gaps = 16/240 (6%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ + + + + S +K P V+ E +Y++E I ++I+ F+KD+RLF+YA+KA
Sbjct: 1 MTTIASYLSIANDLGRWRSITAKAPDVALETKYFKENIGKATSIEAFLKDRRLFNYAMKA 60
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKT 121
FGL D + A ++K++E + DPK+L LN+ FA+++DFS + S +
Sbjct: 61 FGLGDRTFAIGLMRKVMEQGVDDPKALARTLNNPNILAFAKAFDFSAKGAGVPSATLIQD 120
Query: 122 I----IQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKY 177
+ ++ Q+ Q K +E + YFR+ + S+ + D++L+ V + I+P+
Sbjct: 121 VTARFVEQAMQAEQGKRNPGVELALYFREKAPGLTSIYGVLADKKLVQVVQTALDISPRT 180
Query: 178 ISLP------FLK-DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD 230
+ LK V +PKK + RF AM + Q G++S
Sbjct: 181 SAQNIDTQARLLKAKVNVEDFKDPKKL--TAFIARFSAM---YDMQNQGTVSSATASSNA 235
Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 13/228 (5%)
Query: 128 QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVL 187
+S K E+KYF++NI K S++ KDRRL +Y +++F + + ++ ++ V+
Sbjct: 18 RSITAKAPDVALETKYFKENIGKATSIEAFLKDRRLFNYAMKAFGLGDRTFAIGLMRKVM 77
Query: 188 TLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDC 247
G+ +PK + A A+ F F G+ ++ D+ +
Sbjct: 78 EQGVDDPKALARTLNNPNILAFAKAFDFSAKGAGVPSATLIQDVTARFVEQAMQAEQGKR 137
Query: 248 VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIV 307
P V Y++ ++S L D KL +++Q +L ++P +A Q D
Sbjct: 138 NPGVELALYFREKAPGLTSIYGVLADKKLVQVVQTAL-DISPRTSA-------QNIDTQA 189
Query: 308 SQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQS 355
+K + +D T I + +Y Q S
Sbjct: 190 RLLKAKVNVEDFKDPKKLTAF-----IARFSAMYDMQNQGTVSSATAS 232
Score = 81.8 bits (200), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 78/254 (30%), Gaps = 43/254 (16%)
Query: 344 NCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLN 403
+ K ++ +GK SI+ L + +A+ A+ L
Sbjct: 18 RSITAKAPDVALETKYFKENIGKATSIEAFLKDRR-------------LFNYAMKAFGLG 64
Query: 404 MQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIR 463
+ +R V+ DP + A + ++ AF+F+A G+ P S I+
Sbjct: 65 DRTFAIGLMRKVMEQGVDDPKALARTLNNPNILAFAKAFDFSAKGAGVP-----SATLIQ 119
Query: 464 DNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLAN 523
D + + + Q + N + + Y+ + S +LA+
Sbjct: 120 DVTARFVEQAM---------------QAEQGKRNPGVELAL-YFREKAPGLTSIYGVLAD 163
Query: 524 KRILNFLLESKGIDS-------QKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSF 576
K+++ + + I ++ D KDPK R+ +
Sbjct: 164 KKLVQVVQTALDISPRTSAQNIDTQARLLKAKVNVEDFKDPKKLTAFIA--RFSAMYDMQ 221
Query: 577 NFDIHGELSHKKIG 590
N +
Sbjct: 222 NQGTVSSATASSNA 235
>gi|13472569|ref|NP_104136.1| hypothetical protein mlr2906 [Mesorhizobium loti MAFF303099]
gi|14023315|dbj|BAB49922.1| mlr2906 [Mesorhizobium loti MAFF303099]
Length = 210
Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 6/204 (2%)
Query: 521 LANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDI 580
++N R+ + L + G+DS + + ++ + ++DP S AN K+ Y + S+FNF+
Sbjct: 1 MSNSRLYTYALAAYGLDSATEDKTLIKQVLQGGVRDPNSVANKQKNPAYAALASAFNFEQ 60
Query: 581 HGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEI 640
+GE + + Q T D Y Q +E+ + + LALYF+R P+I + Y++
Sbjct: 61 YGENATTIVPAQQP------TVDKYMRQSLEEDAGNTNAGVRLALYFQRKAPDITSWYDV 114
Query: 641 LGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQ 700
L D+ L VV L L FA K+ ++ ++ + I+DF D K+ FL +M
Sbjct: 115 LADTALASVVRTALGLPDSFATADIDKQAQLFEQKLDISDFTDPVKLGKFLTRFTSMYEI 174
Query: 701 SIDYKKALFSSPNQNKDPWNNSFD 724
+ A+ S P
Sbjct: 175 NNPTSTAVTSVSVLFAQPVTAGIS 198
Score = 101 bits (250), Expect = 7e-19, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 49 IKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP 108
+ + RL++YAL A+GL + + IK++L+ + DP S+ N+ + Y A +++F
Sbjct: 1 MSNSRLYTYALAAYGLDSATEDKTLIKQVLQGGVRDPNSVANKQKNPAYAALASAFNFEQ 60
Query: 109 PPKVIQSDI-QHKTIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRL 163
+ + + + + Y + ++ + + YF++ I S + D L
Sbjct: 61 YGENATTIVPAQQPTVDKYMRQSLEEDAGNTNAGVRLALYFQRKAPDITSWYDVLADTAL 120
Query: 164 LDYVLQSFSITPKYISLPFLKDV 186
V + + + + K
Sbjct: 121 ASVVRTALGLPDSFATADIDKQA 143
Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 1/138 (0%)
Query: 158 FKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQP 217
+ RL Y L ++ + +K VL G+ +P + ++ + A+A F F+
Sbjct: 1 MSNSRLYTYALAAYGLDSATEDKTLIKQVLQGGVRDPNSVANKQKNPAYAALASAFNFEQ 60
Query: 218 DGSLSKRDKILTDMQIEKIVSNYFNN-TIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKL 276
G + ++K + + V Y++ ++S+ D L D L
Sbjct: 61 YGENATTIVPAQQPTVDKYMRQSLEEDAGNTNAGVRLALYFQRKAPDITSWYDVLADTAL 120
Query: 277 FKMLQLSLFPLNPEITAD 294
+++ +L + TAD
Sbjct: 121 ASVVRTALGLPDSFATAD 138
Score = 75.7 bits (184), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 27/173 (15%)
Query: 392 TLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIG 451
+AL AY L+ D+ ++ VL DP+S ANK K+ L AFNF G
Sbjct: 6 LYTYALAAYGLDSATEDKTLIKQVLQGGVRDPNSVANKQKNPAYAALASAFNFEQYGENA 65
Query: 452 PIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNI 511
+ + T+ ++ +A Y+
Sbjct: 66 TTIVPAQQPTVDKYMRQSLEEDAGNTNAG--------------------VRLALYFQRKA 105
Query: 512 NTIHSFEELLANKRILNFLLESKGIDS-------QKVREDFLCEIFKSDLKDP 557
I S+ ++LA+ + + + + G+ K + F ++ SD DP
Sbjct: 106 PDITSWYDVLADTALASVVRTALGLPDSFATADIDKQAQLFEQKLDISDFTDP 158
>gi|209963548|ref|YP_002296463.1| hypothetical protein RC1_0201 [Rhodospirillum centenum SW]
gi|209957014|gb|ACI97650.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 508
Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats.
Identities = 77/526 (14%), Positives = 179/526 (34%), Gaps = 59/526 (11%)
Query: 214 RFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPI-VSDQNYYKLAINSVSSFSDFLK 272
F +T ++ ++ + P+ +D Y + + SV + + +
Sbjct: 5 GFGAATVSGGTGSSITQWRLLGRTADRQKTVMMSDPVNKADTQYARAKLASVGTVDELMS 64
Query: 273 DPKLFKMLQLSLFPLNPEITADKFLTLMQEND-------------PIVSQVKYFFQINFH 319
D +L+ + + F L +I + + + +D P ++ F
Sbjct: 65 DRRLYSYV-MRAFGLEDQINSQALVRKILTSDLSDPSSAANRIADPRFRELAAAFNFGAD 123
Query: 320 RDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQ 379
+ S T +QI + + + ++ ++ D+ L +S +++ +
Sbjct: 124 SKSKSKTSPSFINQIADLYVRERYEESVSSKNESLGMMLDFTRNLPTKRSWAEVMADEGM 183
Query: 380 LEGPN---SAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLI 436
+ +PI + A A +L ++ + + + S
Sbjct: 184 AQVVRIIYDLPKPIGPVDAAEQAKSLE------ATIKFSVFTTVTSVQS----------- 226
Query: 437 KLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRI 496
F F+ + G ++ + +D E +F +
Sbjct: 227 AFRDDF-FDVWDANGNPRGSSIPSKVQWEML------ARSYDREKAAFATRYD------- 272
Query: 497 NLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKD 556
+ S+V T I T+ S ++LL ++++L +L++ ++ + + +L ++ +SD
Sbjct: 273 ---VKSDVAALTKTIPTLDSVDDLLNDRKLLPIVLKAFDLEDKATDKTYLRKVLESDPNS 329
Query: 557 PKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEE 616
SFA K + +F G ++D + Y Q E
Sbjct: 330 ATSFAAK-AGPEEKALALAFGMTNSGAKRRG------SPAFVEDIVNRYTTQSFEVSAGN 382
Query: 617 KDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHI 676
+ + L LYF+R + + Y++L D L KV L L A + +++ +L +
Sbjct: 383 ANEALRLGLYFQRKAGGLTSWYQVLADQALAKVARLALNLPSQSAQIDLDRQVDMLSSKL 442
Query: 677 KINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNS 722
I +D +V + M + + ++ + N
Sbjct: 443 DIKKLQDPAEVGKLIEKFLLMWDVTGEDNGNSAAASPLVQLLSGNG 488
Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats.
Identities = 80/464 (17%), Positives = 175/464 (37%), Gaps = 61/464 (13%)
Query: 107 SPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDY 166
S + + D +++ + V +++Y R + + +VD+L DRRL Y
Sbjct: 12 SGGTGSSITQWRLLGRTADRQKTVMMSDPVNKADTQYARAKLASVGTVDELMSDRRLYSY 71
Query: 167 VLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRD- 225
V+++F + + S ++ +LT L++P D RFR +A F F D +
Sbjct: 72 VMRAFGLEDQINSQALVRKILTSDLSDPSSAANRIADPRFRELAAAFNFGADSKSKSKTS 131
Query: 226 ----KILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQ 281
+ D+ + + ++ + + ++ D + + + S+++ + D + ++++
Sbjct: 132 PSFINQIADLYVRERYEESVSSKNESLGMMLD---FTRNLPTKRSWAEVMADEGMAQVVR 188
Query: 282 L------SLFPLNPEITADKFLTLMQEN-DPIVSQVKYFFQINF---------HRDNSSS 325
+ + P++ A ++ + V+ V+ F+ +F R +S
Sbjct: 189 IIYDLPKPIGPVDAAEQAKSLEATIKFSVFTTVTSVQSAFRDDFFDVWDANGNPRGSSIP 248
Query: 326 TKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNS 385
+K+Q + + D K +D K + + S+D+LL+ +
Sbjct: 249 SKVQW-EMLARSYDREKAAFATRYDVKSDVAALTKT--IPTLDSVDDLLNDRK------- 298
Query: 386 AEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFN 445
L L A++L + D+ LR VL S+P+ S+A K+ + L AF
Sbjct: 299 ------LLPIVLKAFDLEDKATDKTYLRKVLESDPNSATSFAAKAGPEE-KALALAFGMT 351
Query: 446 ADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVD 505
G+ S + D V Y + E
Sbjct: 352 NSGA----KRRGSPAFVEDIVNRYTTQS----------------FEVSAGNANEALRLGL 391
Query: 506 YYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
Y+ + S+ ++LA++ + + + SQ + D ++
Sbjct: 392 YFQRKAGGLTSWYQVLADQALAKVARLALNLPSQSAQIDLDRQV 435
Score = 156 bits (395), Expect = 9e-36, Method: Composition-based stats.
Identities = 71/383 (18%), Positives = 151/383 (39%), Gaps = 21/383 (5%)
Query: 24 KDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLS 83
DP+ + +Y R ++ + T+DE + D+RL+SY ++AFGL D +++ ++KIL SDLS
Sbjct: 38 SDPVNKADTQYARAKLASVGTVDELMSDRRLYSYVMRAFGLEDQINSQALVRKILTSDLS 97
Query: 84 DPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQ------HKTIIQDYKQSHQHKEEVA 137
DP S N++ +++ A +++F K +++ + + +
Sbjct: 98 DPSSAANRIADPRFRELAAAFNFGADSKSKSKTSPSFINQIADLYVRERYEESVSSKNES 157
Query: 138 LEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKY 197
L F +N+ S ++ D + V + + + + +L
Sbjct: 158 LGMMLDFTRNLPTKRSWAEVMADEGMAQVVRIIYDLPKPIGPVDAAEQAKSLEATIKFSV 217
Query: 198 FIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNT---IDCVPIVSDQ 254
F + + F + I + +Q E + +Y + SD
Sbjct: 218 FTTVTSVQSAFRDDFFDVWDANGNPRGSSIPSKVQWEMLARSYDREKAAFATRYDVKSDV 277
Query: 255 NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQV---- 310
I ++ S D L D KL ++ L F L + T +L + E+DP +
Sbjct: 278 AALTKTIPTLDSVDDLLNDRKLLPIV-LKAFDLEDKATDKTYLRKVLESDPNSATSFAAK 336
Query: 311 ----KYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKK-NCQILHDDKMQSLIKD--YQLP 363
+ + F NS + + + ++ +++ Y + ++ + ++L +Q
Sbjct: 337 AGPEEKALALAFGMTNSGAKRRGSPAFVEDIVNRYTTQSFEVSAGNANEALRLGLYFQRK 396
Query: 364 LGKIKSIDNLLSGKCQLEGPNSA 386
G + S +L+ + + A
Sbjct: 397 AGGLTSWYQVLADQALAKVARLA 419
Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/198 (18%), Positives = 77/198 (38%), Gaps = 8/198 (4%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
IPS V + + + V + + I + ++D+ + D++L LKA
Sbjct: 247 IPSKVQWEMLARSYDREKAAFATRYDVKSDVAALTKTIPTLDSVDDLLNDRKLLPIVLKA 306
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDF-SPPPKVIQSDIQHK 120
F L D + + +++K+LESD + S + + + A ++ + K S +
Sbjct: 307 FDLEDKATDKTYLRKVLESDPNSATSFAAK-AGPEEKALALAFGMTNSGAKRRGSPAFVE 365
Query: 121 TIIQDY----KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
I+ Y + AL YF++ + S Q+ D+ L + ++ +
Sbjct: 366 DIVNRYTTQSFEVSAGNANEALRLGLYFQRKAGGLTSWYQVLADQALAKVARLALNLPSQ 425
Query: 177 YISLPFLKDV--LTLGLA 192
+ + V L+ L
Sbjct: 426 SAQIDLDRQVDMLSSKLD 443
>gi|84502363|ref|ZP_01000499.1| hypothetical protein OB2597_20146 [Oceanicola batsensis HTCC2597]
gi|84389175|gb|EAQ01972.1| hypothetical protein OB2597_20146 [Oceanicola batsensis HTCC2597]
Length = 274
Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats.
Identities = 44/254 (17%), Positives = 110/254 (43%), Gaps = 13/254 (5%)
Query: 495 RINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDL 554
R + + ++++ NI + + ++LL ++ + F++ + ++ Q + + ++ KS++
Sbjct: 28 RNSAQHKRAIEHFKANIKDVETVDQLLEDQELYAFVMRAFDLEDQIFGKAMIEKVLKSNI 87
Query: 555 KDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKE 614
++ + N D R++E+ + F GE + I N D Y +
Sbjct: 88 EENDALVNRLTDPRFREMYNELGFGTDGEGNLNTILNTWQNR----MVDRYVERQFINFT 143
Query: 615 EEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKK 674
EE++ + +AL F+ + +I + ++IL D+++ + L L + + K+ +L+
Sbjct: 144 EEQNETVGIALEFRNKVGDINSVFDILKDNQMTRFFQTALGLPSQMSGIDIDKQAELLES 203
Query: 675 HIKINDFKDSKKVEDFLYAA----KAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQNNV 730
I ++ D + V+ + A+ S AL + + + + +
Sbjct: 204 KIDLDTLSDPEVVDKLVRKYVAISDALSGTSTQSNGALQMLTGNSGNAAASIIE-----I 258
Query: 731 SLQLSPQKKSNGRF 744
++ + P S RF
Sbjct: 259 TMNIDPVSYSASRF 272
Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats.
Identities = 37/255 (14%), Positives = 103/255 (40%), Gaps = 24/255 (9%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
++D Q + +++ IK + T+D+ ++D+ L+++ ++AF L D
Sbjct: 19 TRDTQ---LDLIRNSAQHKRAIEHFKANIKDVETVDQLLEDQELYAFVMRAFDLEDQIFG 75
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPK----VIQSDIQHKTIIQDY 126
+ I+K+L+S++ + +LVN+L +++ F + I + Q++ + +
Sbjct: 76 KAMIEKVLKSNIEENDALVNRLTDPRFREMYNELGFGTDGEGNLNTILNTWQNRMVDRYV 135
Query: 127 KQS---HQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFL 183
++ ++ + + FR + INSV + KD ++ + + + + +
Sbjct: 136 ERQFINFTEEQNETVGIALEFRNKVGDINSVFDILKDNQMTRFFQTALGLPSQMSGIDID 195
Query: 184 KD--VLTLGLA---NPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVS 238
K +L + ++ ++ A+++ ++ ++ +
Sbjct: 196 KQAELLESKIDLDTLSDPEVVDKLVRKYVAISDAL---------SGTSTQSNGALQMLTG 246
Query: 239 NYFNNTIDCVPIVSD 253
N N + I +
Sbjct: 247 NSGNAAASIIEITMN 261
Score = 70.7 bits (171), Expect = 9e-10, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 85/239 (35%), Gaps = 44/239 (18%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
I + + + I+ ++ + ++++D LL E F + A++L Q
Sbjct: 27 IRNSAQHKRAIEHFKANIKDVETVDQLL-------------EDQELYAFVMRAFDLEDQI 73
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNAD--GSIGPIPMMQSRLTIRD 464
+ + VL SN + D+ N+ D R ++ + F D G++ I +
Sbjct: 74 FGKAMIEKVLKSNIEENDALVNRLTDPRFREMYNELGFGTDGEGNLNTILNTWQNRMVDR 133
Query: 465 NVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANK 524
V+ + ++ + I E + + I+S ++L +
Sbjct: 134 YVER-----------------QFINFTEEQNETVGIALE---FRNKVGDINSVFDILKDN 173
Query: 525 RILNFLLESKGIDSQKVREDFLCEI--FKS-----DLKDPKSFANTYKDNRYKEIISSF 576
++ F + G+ SQ D + +S L DP+ + +Y I +
Sbjct: 174 QMTRFFQTALGLPSQMSGIDIDKQAELLESKIDLDTLSDPE-VVDKLV-RKYVAISDAL 230
>gi|159184366|ref|NP_353586.2| hypothetical protein Atu0559 [Agrobacterium tumefaciens str. C58]
gi|2459707|gb|AAB71783.1| OrfX [Agrobacterium tumefaciens]
gi|159139680|gb|AAK86371.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 211
Score = 193 bits (491), Expect = 8e-47, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 11/203 (5%)
Query: 521 LANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDI 580
+A+ R+ N+ L++ G++ + F+ ++ D +FAN DNRY E+ S +F
Sbjct: 1 MADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAG 60
Query: 581 HGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEI 640
Y Q +E++ + + + LALYF+R P I++ +
Sbjct: 61 ------LGAAATATEAAKSGVIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDF 114
Query: 641 LGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM--- 697
L D L +V L FA K+ +++K I I D +D +KV L M
Sbjct: 115 LADDALAQVFRTTFNLPDAFAAADVDKQAALIEKSINIKDLQDPEKVGKLLERFTIMWEM 174
Query: 698 --DHQSIDYKKALFSSPNQNKDP 718
+ D SS P
Sbjct: 175 QNPSTTYDPLAVFGSSSGYGISP 197
Score = 116 bits (290), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 5/143 (3%)
Query: 49 IKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP 108
+ D RL++YALKA GL DM++A+ FI+K+L SD + N+L+ +Y A+S DF+
Sbjct: 1 MADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAG 60
Query: 109 PPKVIQSDIQHKTII-----QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRL 163
+ K+ + + + + + + YF + I S D L
Sbjct: 61 LGAAATATEAAKSGVIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDAL 120
Query: 164 LDYVLQSFSITPKYISLPFLKDV 186
+F++ + + K
Sbjct: 121 AQVFRTTFNLPDAFAAADVDKQA 143
Score = 94.2 bits (232), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 158 FKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQP 217
D RL +Y L++ + + F++ VLT G ++ + + DNR+ +A++ F
Sbjct: 1 MADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAG 60
Query: 218 DGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLK 272
T+ ++ NY T++ + Y++ ++ S DFL
Sbjct: 61 ----LGAAATATEAAKSGVIGNYARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLA 116
Query: 273 DPKLFKMLQLSLFPLNPEITAD 294
D L ++ + + + AD
Sbjct: 117 DDALAQVFRTTFNLPDAFAAAD 138
Score = 78.4 bits (191), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 20/162 (12%)
Query: 388 EPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNAD 447
+AL A+ L + +R VLT SD +++ANK D+R +L + +F
Sbjct: 2 ADTRLYNYALKAHGLEDMAYAKAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGL 61
Query: 448 GSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYY 507
G+ I + + ++ + Y+
Sbjct: 62 GAAATATEAAKSGVIGNYARQTLEQEAGDDNNG--------------------VRLALYF 101
Query: 508 TLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
TI S + LA+ + + + D +
Sbjct: 102 ERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQA 143
>gi|312115256|ref|YP_004012852.1| hypothetical protein Rvan_2538 [Rhodomicrobium vannielii ATCC
17100]
gi|311220385|gb|ADP71753.1| protein of unknown function DUF1217 [Rhodomicrobium vannielii ATCC
17100]
Length = 264
Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats.
Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 12/236 (5%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
N+ + + + S+ +YY NI I S +EL+ + ++ ++ L + G+ + +
Sbjct: 13 NNYSKWTEITAAEPSVASQTEYYKANIGNITSADELVGDYKLFSYALTAYGLGDEVYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
++ D S ++ E+ +FNF+ +G S VQ+ D DL
Sbjct: 73 LYKKVLSEG-TDKGSLSSKLGKLGVTELAKTFNFEENGT-STTTSDAVQN-----DVVDL 125
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
Y Q +E+K+ E + +ALYF R I + Y+IL D L K V L LS Y A +
Sbjct: 126 YLAQTLEEKQGETNEGAQMALYFYRNASKIDSVYDILADKTLLKTVYTALGLSEYTAAMN 185
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM-----DHQSIDYKKALFSSPNQN 715
K+ +L K + +NDFKD +K+ F+ + ++ + DY ALF + + N
Sbjct: 186 IDKQASLLSKALDLNDFKDPQKLTSFIAKFSTLYDSENNNTASDYVSALFGTSSSN 241
Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats.
Identities = 54/259 (20%), Positives = 106/259 (40%), Gaps = 8/259 (3%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M + + SK + +P V+ + YY+ I +I++ DE + D +LFSYAL
Sbjct: 1 MTSTLTTFLSISNNYSKWTEITAAEPSVASQTEYYKANIGNITSADELVGDYKLFSYALT 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL D +A+ KK+L D SL ++L L A++++F + +
Sbjct: 61 AYGLGDEVYAKALYKKVLSEGT-DKGSLSSKLGKLGVTELAKTFNFEENGTSTTTSDAVQ 119
Query: 121 TIIQDYK-----QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITP 175
+ D + Q + + + YF +N KI+SV + D+ LL V + ++
Sbjct: 120 NDVVDLYLAQTLEEKQGETNEGAQMALYFYRNASKIDSVYDILADKTLLKTVYTALGLSE 179
Query: 176 KYISLPFLKD--VLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQI 233
++ K +L+ L + + + + + + + S L
Sbjct: 180 YTAAMNIDKQASLLSKALDLNDFKDPQKLTSFIAKFSTLYDSENNNTASDYVSALFGTSS 239
Query: 234 EKIVSNYFNNTIDCVPIVS 252
V ++ + + V +S
Sbjct: 240 SNGVVSFSVDLLSSVQGLS 258
Score = 98.0 bits (242), Expect = 6e-18, Method: Composition-based stats.
Identities = 45/249 (18%), Positives = 84/249 (33%), Gaps = 23/249 (9%)
Query: 128 QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVL 187
E +++Y++ NI I S D+L D +L Y L ++ + + + K VL
Sbjct: 19 TEITAAEPSVASQTEYYKANIGNITSADELVGDYKLFSYALTAYGLGDEVYAKALYKKVL 78
Query: 188 TLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDC 247
+ G + + +A+ F F+ +G+ + +D +V Y T++
Sbjct: 79 SEG-TDKGSLSSKLGKLGVTELAKTFNFEENGTSTT----TSDAVQNDVVDLYLAQTLEE 133
Query: 248 VPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
+++ Y+ + + S D L D L K + +L T
Sbjct: 134 KQGETNEGAQMALYFYRNASKIDSVYDILADKTLLKTVYTALGLSE--------YTAAMN 185
Query: 303 NDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL 362
D S + +N + S I K LY D + +L
Sbjct: 186 IDKQASLLSKALDLN-----DFKDPQKLTSFIAKFSTLYDSENNNTASDYVSALFGTSSS 240
Query: 363 PLGKIKSID 371
S+D
Sbjct: 241 NGVVSFSVD 249
Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/265 (16%), Positives = 85/265 (32%), Gaps = 43/265 (16%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ + S + Y+ +G I S D L+ +AL AY L +
Sbjct: 22 TAAEPSVASQTEYYKANIGNITSADELVGD-------------YKLFSYALTAYGLGDEV 68
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ + VL+ +D S ++K + +L FNF +G+ + +
Sbjct: 69 YAKALYKKVLSEG-TDKGSLSSKLGKLGVTELAKTFNFEENGTSTTTSDAVQNDVVDLYL 127
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
K+ E Y+ N + I S ++LA+K +
Sbjct: 128 AQTLEEKQG--------------------ETNEGAQMALYFYRNASKIDSVYDILADKTL 167
Query: 527 LNFLLESKGIDSQKVR------EDFLCEIF-KSDLKDPKSFANTYKDNRYKEIISSFNFD 579
L + + G+ L + +D KDP+ + ++ + S N +
Sbjct: 168 LKTVYTALGLSEYTAAMNIDKQASLLSKALDLNDFKDPQKLTSFIA--KFSTLYDSENNN 225
Query: 580 IHGELSHKKIGKVQDNFHIDDTCDL 604
+ G N + + DL
Sbjct: 226 TASDYVSALFGTSSSNGVVSFSVDL 250
Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/176 (18%), Positives = 63/176 (35%), Gaps = 16/176 (9%)
Query: 224 RDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLS 283
+ T + I S + T + S YYK I +++S + + D KLF +
Sbjct: 2 TSTLTTFLSISNNYSKWTEITAAEPSVASQTEYYKANIGNITSADELVGDYKLFSYALTA 61
Query: 284 LFPLNPEITADKFLTLMQENDPIVSQVKY----------FFQINFHRDNSSSTKIQQDSQ 333
+ L E+ A + + NF + +S+T D+
Sbjct: 62 -YGLGDEVYAKALYKKVLSEGTDKGSLSSKLGKLGVTELAKTFNFEENGTSTTT--SDAV 118
Query: 334 IQKMLDLYKKNC---QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSA 386
++DLY + ++ + + KI S+ ++L+ K L+ +A
Sbjct: 119 QNDVVDLYLAQTLEEKQGETNEGAQMALYFYRNASKIDSVYDILADKTLLKTVYTA 174
>gi|149912827|ref|ZP_01901361.1| flagellar protein, putative [Roseobacter sp. AzwK-3b]
gi|149813233|gb|EDM73059.1| flagellar protein, putative [Roseobacter sp. AzwK-3b]
Length = 267
Score = 190 bits (483), Expect = 7e-46, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 93/252 (36%), Gaps = 24/252 (9%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+M+ I+S+ Y+ I I + EEL+ ++R+L L + G+
Sbjct: 20 ATMDAQRKAFDAGPRISSDTAYFEARIRDISTAEELVNDRRLLRVALGAFGLQDDIDSRF 79
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
+ ++ + DP + AN D RYK++ +F F G + Q D DL
Sbjct: 80 LIRKVLEGGTADPDALANRLTDRRYKDLADAFGFGATGG------PETQSPGFGKDIVDL 133
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKL 656
++ + E E D + LAL +R + + N I+G L KV L L
Sbjct: 134 FRRRSFENAVGESDQGLRLALNAQRELAILANDTGQGDTGWLRIMGTPPLRKVFETALGL 193
Query: 657 SPYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAA---KAMDHQSIDYKK 706
FA L +++ + K + D + + + + ++
Sbjct: 194 PDGFAQLDLDRQLDVFKARAADRLGITDLRQLADEGERDKLVERFLLQDQIRGITVQSSS 253
Query: 707 ALFSSPNQNKDP 718
A+ + Q P
Sbjct: 254 AIALTLLQAVQP 265
Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats.
Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 10/200 (5%)
Query: 10 PSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSH 69
+ D Q K F P +S + Y+ RI+ IST +E + D+RL AL AFGL D
Sbjct: 20 ATMDAQRKAFDA---GPRISSDTAYFEARIRDISTAEELVNDRRLLRVALGAFGLQDDID 76
Query: 70 AEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQS 129
+ I+K+LE +DP +L N+L +Y+ A ++ F I D +
Sbjct: 77 SRFLIRKVLEGGTADPDALANRLTDRRYKDLADAFGFGATGGPETQSPGFGKDIVDLFRR 136
Query: 130 HQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTL 189
+ V E + R ++ + L D D + + P L+ V
Sbjct: 137 RSFENAVG-ESDQGLRLALNAQRELAILANDTGQGDTGWL------RIMGTPPLRKVFET 189
Query: 190 GLANPKKYFIESRDNRFRAM 209
L P + D +
Sbjct: 190 ALGLPDGFAQLDLDRQLDVF 209
Score = 89.2 bits (219), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 9/173 (5%)
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
D ++ ++ YF I I++ ++L DRRLL L +F + S ++
Sbjct: 23 DAQRKAFDAGPRISSDTAYFEARIRDISTAEELVNDRRLLRVALGAFGLQDDIDSRFLIR 82
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNT 244
VL G A+P D R++ +A+ F F G + ++ F N
Sbjct: 83 KVLEGGTADPDALANRLTDRRYKDLADAFGFGATGGPETQSPGFGKDIVDLFRRRSFENA 142
Query: 245 I-DCVPIVSDQNYYKLAINSV--------SSFSDFLKDPKLFKMLQLSLFPLN 288
+ + + + + + + + + P L K+ + +L +
Sbjct: 143 VGESDQGLRLALNAQRELAILANDTGQGDTGWLRIMGTPPLRKVFETALGLPD 195
Score = 74.9 bits (182), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/279 (19%), Positives = 92/279 (32%), Gaps = 59/279 (21%)
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+ +D + ++ S ++ + I + + L++ + L
Sbjct: 18 LNATMDA--QRKAFDAGPRISSDTAYFEARIRDISTAEELVNDRR-------------LL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
+ AL A+ L R +R VL +DPD+ AN+ D R L AF F A G
Sbjct: 63 RVALGAFGLQDDIDSRFLIRKVLEGGTADPDALANRLTDRRYKDLADAFGFGATGG---- 118
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINT 513
P QS +D V + R+RS +A + + R+ L E+
Sbjct: 119 PETQSPGFGKDIVDLF--RRRSFENA-------VGESDQGLRLALNAQRELA-------- 161
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDF----LCEIFKSDLKDPKSFANTYKDNRY 569
+LAN G L ++F++ L P FA D +
Sbjct: 162 ------ILANDT---------GQGDTGWLRIMGTPPLRKVFETALGLPDGFAQLDLDRQL 206
Query: 570 KEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQ 608
F L + ++ D D + + Q
Sbjct: 207 ----DVFKARAADRLGITDLRQLADEGERDKLVERFLLQ 241
>gi|158422870|ref|YP_001524162.1| hypothetical protein AZC_1246 [Azorhizobium caulinodans ORS 571]
gi|158329759|dbj|BAF87244.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
Length = 303
Score = 190 bits (481), Expect = 1e-45, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 8/206 (3%)
Query: 492 TQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFK 551
K + +++ Y+ NI + + +E + N R+ NF + + G+ + ++ ++
Sbjct: 63 KTKAAEPIVKNDIAYFRANITKVKTVDEFVGNYRLFNFAMNAFGLSEMANAKAYMKKVLN 122
Query: 552 SDLKDPKSFANTYKDNRYKEIISSF-NFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMI 610
SDL D SF N D+++K +F N + L+ DD Y +Q I
Sbjct: 123 SDLSDSSSFVNKLADDKFKVFARAFSNLNPTNALTTVPATA-------DDVVGYYLNQSI 175
Query: 611 EKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR 670
E + + D + LALYFKR I++ Y ILGD L+KVV L + ++ R
Sbjct: 176 ETELGQTDQGVQLALYFKRNAATIKSAYSILGDPALYKVVKTVFNLPDNMGKVDIAQQKR 235
Query: 671 ILKKHIKINDFKDSKKVEDFLYAAKA 696
I+ + +ND +D KV L A
Sbjct: 236 IVDAKLNVNDLQDPTKVNKLLQRFAA 261
Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats.
Identities = 51/207 (24%), Positives = 100/207 (48%), Gaps = 8/207 (3%)
Query: 3 PSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAF 62
+ + + T + +PIV + Y+R I + T+DEF+ + RLF++A+ AF
Sbjct: 46 STFATYNYYQKNSAMALKTKAAEPIVKNDIAYFRANITKVKTVDEFVGNYRLFNFAMNAF 105
Query: 63 GLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSY-DFSPPPKVIQSDIQHKT 121
GLS+M++A+ ++KK+L SDLSD S VN+L K++ FAR++ + +P +
Sbjct: 106 GLSEMANAKAYMKKVLNSDLSDSSSFVNKLADDKFKVFARAFSNLNPTNALTTVPATADD 165
Query: 122 IIQDY----KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKY 177
++ Y ++ + + ++ + YF++N I S + D L V F++
Sbjct: 166 VVGYYLNQSIETELGQTDQGVQLALYFKRNAATIKSAYSILGDPALYKVVKTVFNLPDNM 225
Query: 178 ISLPFLKDVLTLGLANPKKYFIESRDN 204
+ + + + K + +D
Sbjct: 226 GKVDIAQQ---KRIVDAKLNVNDLQDP 249
Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/219 (19%), Positives = 86/219 (39%), Gaps = 17/219 (7%)
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEES 141
DP + ++ A + DF + + + E + +
Sbjct: 22 TQDPG--ATTMRWRRWGLSAMAIDFG----STFATYNYYQKNSAMALKTKAAEPIVKNDI 75
Query: 142 KYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIES 201
YFR NI K+ +VD+ + RL ++ + +F ++ + ++K VL L++ + +
Sbjct: 76 AYFRANITKVKTVDEFVGNYRLFNFAMNAFGLSEMANAKAYMKKVLNSDLSDSSSFVNKL 135
Query: 202 RDNRFRAMAENF-RFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN----- 255
D++F+ A F P +L+ D +V Y N +I+ +DQ
Sbjct: 136 ADDKFKVFARAFSNLNPTNALTTVPATADD-----VVGYYLNQSIETELGQTDQGVQLAL 190
Query: 256 YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
Y+K ++ S L DP L+K+++ + D
Sbjct: 191 YFKRNAATIKSAYSILGDPALYKVVKTVFNLPDNMGKVD 229
Score = 73.4 bits (178), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 43/238 (18%)
Query: 336 KMLDLYKKNCQILHDDKMQ-----SLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPI 390
+ Y+KN + K + I ++ + K+K++D +
Sbjct: 49 ATYNYYQKNSAMALKTKAAEPIVKNDIAYFRANITKVKTVDEFVGN-------------Y 95
Query: 391 ITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAF-NFNADGS 449
FA++A+ L+ + ++ VL S+ SD S+ NK DD+ AF N N +
Sbjct: 96 RLFNFAMNAFGLSEMANAKAYMKKVLNSDLSDSSSFVNKLADDKFKVFARAFSNLNPTNA 155
Query: 450 IGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTL 509
+ +P D V +Y N+ + + Y+
Sbjct: 156 LTTVPATAD-----DVVGYYLNQSIETELGQ----------------TDQGVQLALYFKR 194
Query: 510 NINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDN 567
N TI S +L + + + + + D + + D K N +D
Sbjct: 195 NAATIKSAYSILGDPALYKVVKTVFNLPDNMGKVDIAQQ---KRIVDAKLNVNDLQDP 249
>gi|114765258|ref|ZP_01444390.1| hypothetical protein 1100011001307_R2601_00475 [Pelagibaca
bermudensis HTCC2601]
gi|114542393|gb|EAU45421.1| hypothetical protein R2601_00475 [Roseovarius sp. HTCC2601]
Length = 274
Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats.
Identities = 40/209 (19%), Positives = 89/209 (42%), Gaps = 4/209 (1%)
Query: 495 RINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDL 554
R + E+ Y+ NI + + E+L + R+ +F++++ ++ Q + + ++ +SD+
Sbjct: 28 RNEPQHAREIAYFLDNIGNVENVEDLTEDYRLYSFVMKAYDLEDQIFGKAMMEKLLESDI 87
Query: 555 KDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKE 614
D + N D+R+K+ ++ F G+ + + D Y +
Sbjct: 88 NDSSALVNRLTDSRFKDFHNAMGFGPEGQGNLNTLDASWKAA----VVDKYVDTQYVNGK 143
Query: 615 EEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKK 674
+++ I L F+R +I + Y+IL DS L + L A + ++ I+
Sbjct: 144 GDENEAIGTVLEFRRKAGSINSAYDILRDSDLSEFFRTAFGLPEALAGIDIDRQAAIIND 203
Query: 675 HIKINDFKDSKKVEDFLYAAKAMDHQSID 703
+ + D V+D + A+ + D
Sbjct: 204 RLDLETLSDPDVVDDLVRRYVAISDATSD 232
Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/272 (18%), Positives = 108/272 (39%), Gaps = 18/272 (6%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ S VA + K + +P + E Y+ + I ++ +++ +D RL+S+ +KA
Sbjct: 7 MSSSVALQLVNATEDKDQELIRNEPQHAREIAYFLDNIGNVENVEDLTEDYRLYSFVMKA 66
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH-- 119
+ L D + ++K+LESD++D +LVN+L +++ F + F P + + +
Sbjct: 67 YDLEDQIFGKAMMEKLLESDINDSSALVNRLTDSRFKDFHNAMGFGPEGQGNLNTLDASW 126
Query: 120 -----KTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSIT 174
+ + + E A+ FR+ INS + +D L ++ +F +
Sbjct: 127 KAAVVDKYVDTQYVNGKGDENEAIGTVLEFRRKAGSINSAYDILRDSDLSEFFRTAFGLP 186
Query: 175 PKYISLPFLKDVLTLG-------LANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKI 227
+ + + L++P ++ R+ A+++ + S
Sbjct: 187 EALAGIDIDRQAAIINDRLDLETLSDPD--VVDDLVRRYVAISDA--TSDIATSSNAAVT 242
Query: 228 LTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKL 259
L + +Y TID I Y
Sbjct: 243 LLSGALSAASGSYIPATIDIDAIQGFSGYKAR 274
Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 62/210 (29%), Gaps = 27/210 (12%)
Query: 373 LLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKD 432
L +E E F + AY+L Q + + +L S+ +D + N+ D
Sbjct: 40 FLDNIGNVENVEDLTEDYRLYSFVMKAYDLEDQIFGKAMMEKLLESDINDSSALVNRLTD 99
Query: 433 DRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQIST 492
R ++A F +G Q L D A + + +
Sbjct: 100 SRFKDFHNAMGFGPEG--------QGNLNTLDASWKAAVVDKYVDTQYVNGKGDENEAIG 151
Query: 493 QKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIF-- 550
V + +I+S ++L + + F + G+ D +
Sbjct: 152 T----------VLEFRRKAGSINSAYDILRDSDLSEFFRTAFGLPEALAGIDIDRQAAII 201
Query: 551 -----KSDLKDPKSFANTYKDNRYKEIISS 575
L DP + RY I +
Sbjct: 202 NDRLDLETLSDPDVVDDLV--RRYVAISDA 229
Score = 41.8 bits (96), Expect = 0.39, Method: Composition-based stats.
Identities = 32/234 (13%), Positives = 74/234 (31%), Gaps = 24/234 (10%)
Query: 223 KRDKILTDMQIEKIVSNYFNNTIDCVPI-VSDQNYYKLAINSVSSFSDFLKDPKLFKMLQ 281
+Q+ + I P + Y+ I +V + D +D +L+ +
Sbjct: 5 AGMSSSVALQLVNATEDKDQELIRNEPQHAREIAYFLDNIGNVENVEDLTEDYRLYSFV- 63
Query: 282 LSLFPLNPEITADKFLTLMQENDPIVSQV-----------KYFFQINFHRDNSSSTKIQQ 330
+ + L +I + + E+D S + + F + +
Sbjct: 64 MKAYDLEDQIFGKAMMEKLLESDINDSSALVNRLTDSRFKDFHNAMGFGPEGQGNLNTLD 123
Query: 331 DSQIQKMLDLY-KKNCQILHDDKMQS--LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAE 387
S ++D Y D+ ++ + +++ G I S ++L E +A
Sbjct: 124 ASWKAAVVDKYVDTQYVNGKGDENEAIGTVLEFRRKAGSINSAYDILRDSDLSEFFRTAF 183
Query: 388 EPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHA 441
L +++ + SDPD + + R + ++ A
Sbjct: 184 GLPEALA------GIDIDRQAAIINDRLDLETLSDPDVVDDLVR--RYVAISDA 229
>gi|89068718|ref|ZP_01156104.1| hypothetical protein OG2516_06756 [Oceanicola granulosus HTCC2516]
gi|89045681|gb|EAR51743.1| hypothetical protein OG2516_06756 [Oceanicola granulosus HTCC2516]
Length = 274
Score = 187 bits (475), Expect = 5e-45, Method: Composition-based stats.
Identities = 37/195 (18%), Positives = 81/195 (41%), Gaps = 4/195 (2%)
Query: 501 NSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSF 560
+D + + I + E+LLA++ + F++ + ++ Q + + ++ + D+ D K+
Sbjct: 34 ARAIDTFRERVGGIETVEDLLADQDVYAFVMRAYDLEDQIFGKALVGKVLEGDITDSKAL 93
Query: 561 ANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPN 620
N D R +E+ + F G + + D Y Q + +++
Sbjct: 94 INRLTDPRMRELYTGLGFTEGGTKNANTLDPAWQEA----MVDRYVEQHFINAQADQNAT 149
Query: 621 IALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKIND 680
+ +AL F+R P I ++L D+ L ++ L + A L K+ + + I
Sbjct: 150 VGVALEFRRAAPEISTWMDVLKDADLSTLMRTALGVPSSVAQLDIDKQAELFARKFDITK 209
Query: 681 FKDSKKVEDFLYAAK 695
+D +VE +
Sbjct: 210 LQDPAEVEKLVRKYA 224
Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats.
Identities = 30/184 (16%), Positives = 75/184 (40%), Gaps = 10/184 (5%)
Query: 10 PSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSH 69
++D Q + + +RER+ I T+++ + D+ ++++ ++A+ L D
Sbjct: 18 ATRDQQ---LEMIGSSTRHARAIDTFRERVGGIETVEDLLADQDVYAFVMRAYDLEDQIF 74
Query: 70 AEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPP-------KVIQSDIQHKTI 122
+ + K+LE D++D K+L+N+L + + F+ +
Sbjct: 75 GKALVGKVLEGDITDSKALINRLTDPRMRELYTGLGFTEGGTKNANTLDPAWQEAMVDRY 134
Query: 123 IQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPF 182
++ + + Q + + + FR+ +I++ + KD L + + + L
Sbjct: 135 VEQHFINAQADQNATVGVALEFRRAAPEISTWMDVLKDADLSTLMRTALGVPSSVAQLDI 194
Query: 183 LKDV 186
K
Sbjct: 195 DKQA 198
Score = 89.5 bits (220), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/189 (15%), Positives = 66/189 (34%), Gaps = 3/189 (1%)
Query: 109 PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL 168
+ ++ +D + FR+ + I +V+ L D+ + +V+
Sbjct: 5 TGLATPAALKLVDATRDQQLEMIGSSTRHARAIDTFRERVGGIETVEDLLADQDVYAFVM 64
Query: 169 QSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRD--- 225
+++ + + + VL + + K D R R + F G+ +
Sbjct: 65 RAYDLEDQIFGKALVGKVLEGDITDSKALINRLTDPRMRELYTGLGFTEGGTKNANTLDP 124
Query: 226 KILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
M + ++ N D V ++ A +S++ D LKD L +++ +L
Sbjct: 125 AWQEAMVDRYVEQHFINAQADQNATVGVALEFRRAAPEISTWMDVLKDADLSTLMRTALG 184
Query: 286 PLNPEITAD 294
+ D
Sbjct: 185 VPSSVAQLD 193
Score = 68.7 bits (166), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 73/220 (33%), Gaps = 38/220 (17%)
Query: 346 QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQ 405
I + I ++ +G I+++++LL+ + F + AY+L Q
Sbjct: 26 MIGSSTRHARAIDTFRERVGGIETVEDLLADQ-------------DVYAFVMRAYDLEDQ 72
Query: 406 DLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDN 465
+ + VL + +D + N+ D R+ +L F G+ +
Sbjct: 73 IFGKALVGKVLEGDITDSKALINRLTDPRMRELYTGLGFTEGGTKNANTL--DPAWQEAM 130
Query: 466 VKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKR 525
V Y + A+ + + + I ++ ++L +
Sbjct: 131 VDRYVEQHFINAQADQNATVGVALEFRRAAPE----------------ISTWMDVLKDAD 174
Query: 526 ILNFLLESKG-------IDSQKVREDFLCEIFKSDLKDPK 558
+ + + G +D K E F + + L+DP
Sbjct: 175 LSTLMRTALGVPSSVAQLDIDKQAELFARKFDITKLQDPA 214
>gi|218528724|ref|YP_002419540.1| hypothetical protein Mchl_0691 [Methylobacterium chloromethanicum
CM4]
gi|218521027|gb|ACK81612.1| protein of unknown function DUF1217 [Methylobacterium
chloromethanicum CM4]
Length = 417
Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats.
Identities = 78/403 (19%), Positives = 133/403 (33%), Gaps = 60/403 (14%)
Query: 348 LHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
+ + Y+ +G++KS+D+LL + +A+ AY L
Sbjct: 23 AAEPTVARETAYYEAHIGQVKSVDDLLGDQR-------------LYAYAMKAYGLEDMTY 69
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
+ +R VL + S+AN+ DDR AF+F Q +
Sbjct: 70 AKAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFG-----------QGVTATGADPA 118
Query: 468 HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI- 526
+ + R+ + K S + + + S +D T TI + LA +
Sbjct: 119 RFGEQARAASLSAPKLLADSYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAGRVAN 178
Query: 527 ---------------LNFLLESKGIDSQKVRED---FLCEIFKSDLKDPKSFANT--YKD 566
KG + D F +DL ++ T Y D
Sbjct: 179 PAKVTPAEIAAAVAAQIEASALKGKVQAGLAADGSLFFETTALTDLGADGAYGGTGLYAD 238
Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHID--------DTCDLYKHQMIEKKEEEKD 618
S+ I V F D Y Q +E + + D
Sbjct: 239 TLVNAGGSNRTLTIRNAALSANRTAVDVGFGTDLGPDSMAQTVTQAYLRQSLESEAGDAD 298
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP---ERKKIRILKKH 675
+ LALYF R I + Y+ILGD+ L +V + + L K+ +++
Sbjct: 299 TGVRLALYFARKASTIASAYDILGDAALSQVANTVIGLPATSGAATSEALAKRAQLIAGK 358
Query: 676 IKINDFKDSKKVEDFLYAA----KAMDHQSIDYKKALFSSPNQ 714
I I F+D K++ F+ A ++ + ALF+
Sbjct: 359 IDIASFRDPAKLDAFVRRFAAIWDAQNNTASAPILALFTGTGS 401
Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats.
Identities = 57/345 (16%), Positives = 114/345 (33%), Gaps = 50/345 (14%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M + + S + +P V+ E YY I + ++D+ + D+RL++YA+K
Sbjct: 1 MTDTLTSYRLIAKDLPASLSRKAAEPTVARETAYYEAHIGQVKSVDDLLGDQRLYAYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDI--- 117
A+GL DM++A+ F++K+LE + S N+L +Y FA+++ F +D
Sbjct: 61 AYGLEDMTYAKAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVTATGADPARF 120
Query: 118 --QHKTIIQDYKQSHQHKEEVALEESKYF----RKNIHKINSVDQLFKDRRLLDYVLQSF 171
Q + + + + F R + SV + L V
Sbjct: 121 GEQARAASLSAPKLLADSYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAGRVANPA 180
Query: 172 SITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSK-------- 223
+TP I+ + L + + + + F DG+
Sbjct: 181 KVTPAEIAAAVAAQIEASALKGKVQAGLAADGSLFFETTALTDLGADGAYGGTGLYADTL 240
Query: 224 ----------------------------RDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN 255
+ D + + Y +++ +D
Sbjct: 241 VNAGGSNRTLTIRNAALSANRTAVDVGFGTDLGPDSMAQTVTQAYLRQSLESEAGDADTG 300
Query: 256 -----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADK 295
Y+ ++++S D L D L ++ + A
Sbjct: 301 VRLALYFARKASTIASAYDILGDAALSQVANTVIGLPATSGAATS 345
Score = 99.2 bits (245), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 45/97 (46%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ ++K + E YY +I + S ++LL ++R+ + +++ G++ +
Sbjct: 13 KDLPASLSRKAAEPTVARETAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEDMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIH 581
F+ ++ + SFAN D+RY +F+F
Sbjct: 73 FMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQG 109
>gi|254559265|ref|YP_003066360.1| hypothetical protein METDI0661 [Methylobacterium extorquens DM4]
gi|254266543|emb|CAX22307.1| hypothetical protein METDI0661 [Methylobacterium extorquens DM4]
Length = 417
Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats.
Identities = 76/393 (19%), Positives = 131/393 (33%), Gaps = 60/393 (15%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
Y+ +G++K++D+LL + +A+ AY L + +R VL
Sbjct: 32 TAYYEAHIGQVKTVDDLLGDQR-------------LYAYAMKAYGLEEMTYAKAFMRKVL 78
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSI 476
+ S+AN+ DDR AF+F Q + + + R+
Sbjct: 79 EEGAASAASFANRLADDRYTAFAKAFSFG-----------QGVTATGADPARFGEQARAA 127
Query: 477 HDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI---------- 526
+ K S + + + S +D T TI + LA +
Sbjct: 128 SLSAPKLLADSYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAGRVANPAKVTPAEI 187
Query: 527 ------LNFLLESKGIDSQKVRED---FLCEIFKSDLKDPKSFANT--YKDNRYKEIISS 575
KG + D F +DL ++ T Y D S+
Sbjct: 188 AAAVAAQIEASALKGKVQAGLAADGSLFFETTALTDLGADGAYGGTGLYADTLVNAGGSN 247
Query: 576 FNFDIHGELSHKKIGKVQDNFHID--------DTCDLYKHQMIEKKEEEKDPNIALALYF 627
I V F D Y Q +E + + D + LALYF
Sbjct: 248 RTLTIRNAALSANRTAVDVGFGTDLGPDSMAQTVTQAYLRQSLESEAGDADTGVRLALYF 307
Query: 628 KRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP---ERKKIRILKKHIKINDFKDS 684
R + + Y+ILGD+ L +V + + L K+ +++ I I F+D
Sbjct: 308 ARKASTLTSAYDILGDAALSQVANTVIGLPATSGAATSEALAKRAQLIAGKIDIASFRDP 367
Query: 685 KKVEDFLYAA----KAMDHQSIDYKKALFSSPN 713
K++ F+ A ++ + ALF+
Sbjct: 368 AKLDAFVRRFAAIWDAQNNTASAPILALFTGTG 400
Score = 136 bits (343), Expect = 9e-30, Method: Composition-based stats.
Identities = 57/345 (16%), Positives = 115/345 (33%), Gaps = 50/345 (14%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M + + S + +P+V+ E YY I + T+D+ + D+RL++YA+K
Sbjct: 1 MTDTLTSYRLIAKDLPASLSRKAAEPMVARETAYYEAHIGQVKTVDDLLGDQRLYAYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDI--- 117
A+GL +M++A+ F++K+LE + S N+L +Y FA+++ F +D
Sbjct: 61 AYGLEEMTYAKAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVTATGADPARF 120
Query: 118 --QHKTIIQDYKQSHQHKEEVALEESKYF----RKNIHKINSVDQLFKDRRLLDYVLQSF 171
Q + + + + F R + SV + L V
Sbjct: 121 GEQARAASLSAPKLLADSYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAGRVANPA 180
Query: 172 SITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSK-------- 223
+TP I+ + L + + + + F DG+
Sbjct: 181 KVTPAEIAAAVAAQIEASALKGKVQAGLAADGSLFFETTALTDLGADGAYGGTGLYADTL 240
Query: 224 ----------------------------RDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN 255
+ D + + Y +++ +D
Sbjct: 241 VNAGGSNRTLTIRNAALSANRTAVDVGFGTDLGPDSMAQTVTQAYLRQSLESEAGDADTG 300
Query: 256 -----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADK 295
Y+ ++++S D L D L ++ + A
Sbjct: 301 VRLALYFARKASTLTSAYDILGDAALSQVANTVIGLPATSGAATS 345
Score = 98.0 bits (242), Expect = 5e-18, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 45/97 (46%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ ++K + E YY +I + + ++LL ++R+ + +++ G++ +
Sbjct: 13 KDLPASLSRKAAEPMVARETAYYEAHIGQVKTVDDLLGDQRLYAYAMKAYGLEEMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIH 581
F+ ++ + SFAN D+RY +F+F
Sbjct: 73 FMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQG 109
>gi|240137254|ref|YP_002961723.1| hypothetical protein MexAM1_META1p0505 [Methylobacterium extorquens
AM1]
gi|240007220|gb|ACS38446.1| hypothetical protein MexAM1_META1p0505 [Methylobacterium extorquens
AM1]
Length = 417
Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats.
Identities = 76/403 (18%), Positives = 133/403 (33%), Gaps = 60/403 (14%)
Query: 348 LHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
+ + I Y+ +G++KS+D+LL + +A+ AY L
Sbjct: 23 AAEPTVAREIAYYEAHIGQVKSVDDLLGDQR-------------LYAYAMKAYGLEDMTY 69
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
+ +R VL + S+AN+ DDR AF+F Q +
Sbjct: 70 AKAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFG-----------QGVTATGADPA 118
Query: 468 HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI- 526
+ + R+ + K S + + + S +D T TI + LA +
Sbjct: 119 RFGEQARAASLSAPKLLADSYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAGQVAN 178
Query: 527 ---------------LNFLLESKGIDSQKVRED---FLCEIFKSDLKDPKSF--ANTYKD 566
KG + D F +DL ++ D
Sbjct: 179 PAKVTPAEIAAAVAAQIEASALKGKVQAGLAADGSLFFETTALTDLGADGAYGGTGRDAD 238
Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHID--------DTCDLYKHQMIEKKEEEKD 618
+ I V F D Y Q +E + + D
Sbjct: 239 TLVNAGGPNRTLTIRNAPLSANRTAVDVGFGTDLGPDSMAQAVTQAYLRQSLESEAGDAD 298
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP---ERKKIRILKKH 675
+ LALYF R +I + Y+ILGD+ L +V + + L K+ +++ +
Sbjct: 299 TGVRLALYFARKASSIASAYDILGDAALSQVANTVIGLPATSGAATSEALAKRAQLIDRK 358
Query: 676 IKINDFKDSKKVEDFLYAA----KAMDHQSIDYKKALFSSPNQ 714
I I F+D K++ F+ A ++ + ALF+
Sbjct: 359 IDIASFRDPAKLDAFVRRFAAIWDAQNNTASAPILALFTGTGS 401
Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats.
Identities = 65/396 (16%), Positives = 132/396 (33%), Gaps = 55/396 (13%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M + + S + +P V+ E YY I + ++D+ + D+RL++YA+K
Sbjct: 1 MTDTLTSYRLIAKDLPASLSRKAAEPTVAREIAYYEAHIGQVKSVDDLLGDQRLYAYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDI--- 117
A+GL DM++A+ F++K+LE + S N+L +Y FA+++ F +D
Sbjct: 61 AYGLEDMTYAKAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVTATGADPARF 120
Query: 118 --QHKTIIQDYKQSHQHKEEVALEESKYF----RKNIHKINSVDQLFKDRRLLDYVLQSF 171
Q + + + + F R + SV + L V
Sbjct: 121 GEQARAASLSAPKLLADSYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAGQVANPA 180
Query: 172 SITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSK-------- 223
+TP I+ + L + + + + F DG+
Sbjct: 181 KVTPAEIAAAVAAQIEASALKGKVQAGLAADGSLFFETTALTDLGADGAYGGTGRDADTL 240
Query: 224 ----------------------------RDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN 255
+ D + + Y +++ +D
Sbjct: 241 VNAGGPNRTLTIRNAPLSANRTAVDVGFGTDLGPDSMAQAVTQAYLRQSLESEAGDADTG 300
Query: 256 -----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFP--LNPEITADKFLTLMQENDPIVS 308
Y+ +S++S D L D L ++ + + T++ Q D +
Sbjct: 301 VRLALYFARKASSIASAYDILGDAALSQVANTVIGLPATSGAATSEALAKRAQLIDRKID 360
Query: 309 QVKY---FFQINFHRDNSSSTKIQQDSQIQKMLDLY 341
+ F R ++ Q ++ +L L+
Sbjct: 361 IASFRDPAKLDAFVRRFAAIWDAQNNTASAPILALF 396
Score = 99.2 bits (245), Expect = 2e-18, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 46/97 (47%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ ++K + E+ YY +I + S ++LL ++R+ + +++ G++ +
Sbjct: 13 KDLPASLSRKAAEPTVAREIAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEDMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIH 581
F+ ++ + SFAN D+RY +F+F
Sbjct: 73 FMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQG 109
>gi|188579922|ref|YP_001923367.1| hypothetical protein Mpop_0654 [Methylobacterium populi BJ001]
gi|179343420|gb|ACB78832.1| protein of unknown function DUF1217 [Methylobacterium populi BJ001]
Length = 417
Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats.
Identities = 73/402 (18%), Positives = 132/402 (32%), Gaps = 60/402 (14%)
Query: 348 LHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
+ + Y+ +G++K++D+LL + +A+ AY L
Sbjct: 23 AAEPTVARETAYYEAHIGQVKTVDDLLGDQR-------------LYAYAMKAYGLEEMTY 69
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
+ +R VL + S+AN+ DDR AF+F Q +
Sbjct: 70 AKAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFG-----------QGVSATGADAA 118
Query: 468 HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKR-- 525
+ R R+ + K S + + + S +D T TI + LA +
Sbjct: 119 RFGERARAATLSAPKLLADAYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAGRVQD 178
Query: 526 -----------ILNFLLESKGIDSQ------KVREDFLCEIFKSDLKDPKSFANTY--KD 566
+ +E + + F +DL ++ + D
Sbjct: 179 LSKVTPSEIATAVAAQIEGSDLKGKVQAGLAADGSLFFETTALTDLGADGAYGGSGLNAD 238
Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHID--------DTCDLYKHQMIEKKEEEKD 618
+ I V F D Y Q +E + D
Sbjct: 239 TLVSAGGAIRTLAIRNVPLSADRTAVDVGFGTDLGPDTMALTVTQAYLRQSLESDAGDTD 298
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP---ERKKIRILKKH 675
+ LALYF R P++ + Y+ILGD+ L +V + + L K+ +++
Sbjct: 299 TGVRLALYFARKGPSLSSAYDILGDAALSQVANTVIGLPATSGAATSEALAKRAQLIADK 358
Query: 676 IKINDFKDSKKVEDFLYAA----KAMDHQSIDYKKALFSSPN 713
I I +D K++ FL A ++ + ALF+
Sbjct: 359 IDIAGLRDPAKLDAFLRRFAAIWDAQNNTASAPVLALFTGAG 400
Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats.
Identities = 67/418 (16%), Positives = 133/418 (31%), Gaps = 53/418 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M + + + + +P V+ E YY I + T+D+ + D+RL++YA+K
Sbjct: 1 MTDTLTSYRLIAKDLPASLARKAAEPTVARETAYYEAHIGQVKTVDDLLGDQRLYAYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH- 119
A+GL +M++A+ F++K+LE + S N+L +Y FA+++ F +D
Sbjct: 61 AYGLEEMTYAKAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVSATGADAARF 120
Query: 120 ----KTIIQDYKQSHQHKEEVALEESKYF----RKNIHKINSVDQLFKDRRLLDYVLQSF 171
+ + + + F R + SV + L V
Sbjct: 121 GERARAATLSAPKLLADAYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAGRVQDLS 180
Query: 172 SITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGS----------- 220
+TP I+ + L + + + + F DG+
Sbjct: 181 KVTPSEIATAVAAQIEGSDLKGKVQAGLAADGSLFFETTALTDLGADGAYGGSGLNADTL 240
Query: 221 LSKRDKILT-------------------------DMQIEKIVSNYFNNTIDCVPIVSDQN 255
+S I T D + Y +++ +D
Sbjct: 241 VSAGGAIRTLAIRNVPLSADRTAVDVGFGTDLGPDTMALTVTQAYLRQSLESDAGDTDTG 300
Query: 256 -----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQV 310
Y+ S+SS D L D L + ++ L A L + I ++
Sbjct: 301 VRLALYFARKGPSLSSAYDILGDAAL-SQVANTVIGLPATSGAATSEALAKRAQLIADKI 359
Query: 311 KYFFQINFHRDNSSSTKIQ--QDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGK 366
+ + ++ + D+Q + L+ +G
Sbjct: 360 DIAGLRDPAKLDAFLRRFAAIWDAQNNTASAPVLALFTGAGGIDAELLLNRQTARIGA 417
Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 47/117 (40%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ +K + E YY +I + + ++LL ++R+ + +++ G++ +
Sbjct: 13 KDLPASLARKAAEPTVARETAYYEAHIGQVKTVDDLLGDQRLYAYAMKAYGLEEMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDT 601
F+ ++ + SFAN D+RY +F+F + + +
Sbjct: 73 FMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVSATGADAARFGERARAATL 129
>gi|85706198|ref|ZP_01037293.1| flagellar protein, putative [Roseovarius sp. 217]
gi|85669362|gb|EAQ24228.1| flagellar protein, putative [Roseovarius sp. 217]
Length = 267
Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats.
Identities = 48/232 (20%), Positives = 98/232 (42%), Gaps = 21/232 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ E+ S + +I + DY+ I I + E+L++++R+L L + G+ F
Sbjct: 21 TFERQSDLFNKSPQIVRDTDYFEQTIGKITTAEDLVSDRRLLRVALGAFGLQEDIDSRAF 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ I + + S AN D+RYK++ +F F + + I + Q + + + +
Sbjct: 81 IRAILEGGTINEDSLANRLADDRYKQLAEAFAF------ADRPIPRTQLSTFGSEITEKF 134
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLS 657
+ + E ++D ++ LAL +R + +I + ILG++ L +V L L
Sbjct: 135 RRREFEVAVGDQDQSLRLALNARRELGDIAGDDAAEDTRWFRILGNTPLRRVFEVALGLP 194
Query: 658 PYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAAKAMDHQSI 702
FA +++ +K ++D D+ E L D +
Sbjct: 195 ESFAQADLDRQLDEIKSRAARQLNIGSLSDLADTDVQEQLLRRFLLRDQMAS 246
Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats.
Identities = 43/213 (20%), Positives = 83/213 (38%), Gaps = 21/213 (9%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
+K P + + Y+ + I I+T ++ + D+RL AL AFGL + + FI+ ILE
Sbjct: 29 FNKSPQIVRDTDYFEQTIGKITTAEDLVSDRRLLRVALGAFGLQEDIDSRAFIRAILEGG 88
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQ-----HKEEV 136
+ SL N+L +Y+ A ++ F+ P + I + + + ++
Sbjct: 89 TINEDSLANRLADDRYKQLAEAFAFADRPIPRTQLSTFGSEITEKFRRREFEVAVGDQDQ 148
Query: 137 ALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKK 196
+L + R+ + I D +D R + + L+ V + L P+
Sbjct: 149 SLRLALNARRELGDIA-GDDAAEDTRWF-----------RILGNTPLRRVFEVALGLPES 196
Query: 197 YFIESRDNRFRAM----AENFRFQPDGSLSKRD 225
+ D + + A L+ D
Sbjct: 197 FAQADLDRQLDEIKSRAARQLNIGSLSDLADTD 229
Score = 86.1 bits (211), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 15/175 (8%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
+K + ++ YF + I KI + + L DRRLL L +F + S F++ +L G
Sbjct: 30 NKSPQIVRDTDYFEQTIGKITTAEDLVSDRRLLRVALGAFGLQEDIDSRAFIRAILEGGT 89
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQ----PDGSLSKRDKILTDMQIEKIVSNYFNNTIDC 247
N D+R++ +AE F F P LS +T+ + +
Sbjct: 90 INEDSLANRLADDRYKQLAEAFAFADRPIPRTQLSTFGSEITEKFRRREFEVAVGDQDQS 149
Query: 248 VPIVSDQNYYKLAINSV--------SSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
+ + + + + + + + L + L ++ +++L AD
Sbjct: 150 LRLALNA---RRELGDIAGDDAAEDTRWFRILGNTPLRRVFEVALGLPESFAQAD 201
Score = 68.0 bits (164), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 26/196 (13%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
++ +GKI + ++L+S + L+ AL A+ L R +R +L
Sbjct: 39 TDYFEQTIGKITTAEDLVSDRR-------------LLRVALGAFGLQEDIDSRAFIRAIL 85
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSI 476
+ DS AN+ DDR +L AF F AD I + I + +
Sbjct: 86 EGGTINEDSLANRLADDRYKQLAEAFAF-ADRPIPRTQLSTFGSEITEKFRRREFEVAVG 144
Query: 477 HDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGI 536
++ + + + ++ +L N + + G+
Sbjct: 145 DQDQSLRLALNARRELGDIAGDDAAEDTRWFR-----------ILGNTPLRRVFEVALGL 193
Query: 537 DSQKVREDFLCEIFKS 552
+ + L
Sbjct: 194 -PESFAQADLDRQLDE 208
Score = 42.2 bits (97), Expect = 0.36, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 65/202 (32%), Gaps = 23/202 (11%)
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPE 290
+ + + IV D +Y++ I +++ D + D +L ++ L F L +
Sbjct: 16 ALLARTFERQSDLFNKSPQIVRDTDYFEQTIGKITTAEDLVSDRRLLRV-ALGAFGLQED 74
Query: 291 ITADKFLTLMQEN-------------DPIVSQVKYFFQINFHRDNSSSTKIQQ-DSQIQK 336
I + F+ + E D Q+ F F T++ S+I +
Sbjct: 75 IDSRAFIRAILEGGTINEDSLANRLADDRYKQLAEAFA--FADRPIPRTQLSTFGSEITE 132
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFA 396
+ + D+ L + + LG I D+ + + + A
Sbjct: 133 KFRRREFEVAVGDQDQSLRLALNARRELGDIAG-DDAAEDTRWFRILGNTPLRRV-FEVA 190
Query: 397 LDAYNLNMQDLDRDQLRNVLTS 418
L L + + L L
Sbjct: 191 L---GL-PESFAQADLDRQLDE 208
>gi|209967005|ref|YP_002299920.1| flagellar basal-body rod protein FlgF, putative [Rhodospirillum
centenum SW]
gi|209960471|gb|ACJ01108.1| flagellar basal-body rod protein FlgF, putative [Rhodospirillum
centenum SW]
Length = 259
Score = 183 bits (465), Expect = 7e-44, Method: Composition-based stats.
Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 8/219 (3%)
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
N + T+ R + ++ + I I S E LL ++R L F+L S
Sbjct: 7 ATVTYNILKKQGDTAVTRYRDQKTVEKTINDFKTRIEKIDSPEALLKDRRALEFVLTSFQ 66
Query: 536 IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDN 595
++S+ + L ++ D + KS AN D RY ++ +S LS K Q+
Sbjct: 67 LESEIGKTGILRKLLTEDPTEEKSLANRLVDPRYTKLATS--------LSGKIPEAFQNE 118
Query: 596 FHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLK 655
++ + Y EK E + + ALYFKR I N+ + +IL D L VV K L
Sbjct: 119 SFVNGLINNYVTNTFEKSVGEGNTGLREALYFKRNIANVTSVSQILADRALSYVVRKGLN 178
Query: 656 LSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAA 694
L FA+ ++ R L+K + + FKD VE F
Sbjct: 179 LPDSFAMQDFDQQKRYLEKKLDLTKFKDPGYVEKFTQRF 217
Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats.
Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 5/188 (2%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ + V K + V ++ RI+ I + + +KD+R + L +
Sbjct: 5 LGATVTYNILKKQGDTAVTRYRDQKTVEKTINDFKTRIEKIDSPEALLKDRRALEFVLTS 64
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKT 121
F L ++K+L D ++ KSL N+L +Y A S P+ Q++
Sbjct: 65 FQLESEIGKTGILRKLLTEDPTEEKSLANRLVDPRYTKLATSLS-GKIPEAFQNESFVNG 123
Query: 122 IIQDYKQSH----QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKY 177
+I +Y + + L E+ YF++NI + SV Q+ DR L V + ++ +
Sbjct: 124 LINNYVTNTFEKSVGEGNTGLREALYFKRNIANVTSVSQILADRALSYVVRKGLNLPDSF 183
Query: 178 ISLPFLKD 185
F +
Sbjct: 184 AMQDFDQQ 191
Score = 83.4 bits (204), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 3/172 (1%)
Query: 124 QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFL 183
D + ++ + F+ I KI+S + L KDRR L++VL SF + + L
Sbjct: 18 GDTAVTRYRDQKTVEKTINDFKTRIEKIDSPEALLKDRRALEFVLTSFQLESEIGKTGIL 77
Query: 184 KDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNN 243
+ +LT K D R+ +A + + +++ + I V+N F
Sbjct: 78 RKLLTEDPTEEKSLANRLVDPRYTKLATSL--SGKIPEAFQNESFVNGLINNYVTNTFEK 135
Query: 244 TI-DCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
++ + + + Y+K I +V+S S L D L +++ L + D
Sbjct: 136 SVGEGNTGLREALYFKRNIANVTSVSQILADRALSYVVRKGLNLPDSFAMQD 187
Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 29/220 (13%)
Query: 354 QSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLR 413
+ + Y+ K+I++ + +++ P + + L+F L ++ L + LR
Sbjct: 19 DTAVTRYRDQKTVEKTINDFKTRIEKIDSPEALLKDRRALEFVLTSFQLESEIGKTGILR 78
Query: 414 NVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRK 473
+LT +P++ S AN+ D R KL + G I Q+ + + +Y
Sbjct: 79 KLLTEDPTEEKSLANRLVDPRYTKLATSL----SGKI--PEAFQNESFVNGLINNYVTN- 131
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
E Y+ NI + S ++LA++ + + +
Sbjct: 132 ---------------TFEKSVGEGNTGLREALYFKRNIANVTSVSQILADRALSYVVRKG 176
Query: 534 KGIDSQKVREDF--LCEIFKSDLKDPKSFANTYKDNRYKE 571
+ +DF + L +KD Y E
Sbjct: 177 LNLPDSFAMQDFDQQKRYLEKKLD-----LTKFKDPGYVE 211
>gi|158422871|ref|YP_001524163.1| hypothetical protein AZC_1247 [Azorhizobium caulinodans ORS 571]
gi|158329760|dbj|BAF87245.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
Length = 295
Score = 183 bits (465), Expect = 7e-44, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 15/240 (6%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ + Q+ E+ + YY NI ++ S ++ + N R+LN+ + + G+ + +
Sbjct: 47 KNSDTALKQEAAQPEVARDTAYYEANIGSVTSVDDFVNNYRLLNYAMTAYGLSDETNAKA 106
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSF-NFDIHGELSHKKIGKVQDNFHIDDTCD 603
+ ++ SDL D S D RY + +F N + + + Q +
Sbjct: 107 LVKQVLSSDLSDSSSLVYKLNDQRYLNLAKAFANLNPNDSAASYTAATTQQ------VVN 160
Query: 604 LYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVL 663
Y Q +E ++D LALYF+R NI + Y ILGDS+L+KVV L +
Sbjct: 161 SYLEQQLENDVGQQDEGTQLALYFQRNAANITSGYSILGDSQLWKVVQTVYDLPESLGSI 220
Query: 664 PERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSF 723
++ +++ + I D +D KV L A+ + S + DP F
Sbjct: 221 DINQQKDLVESKVNIADLQDPTKVSALLDRFSAVWDATN--------SSAASSDPVLELF 272
Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats.
Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 10/231 (4%)
Query: 3 PSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAF 62
+ + P V+ + YY I ++++D+F+ + RL +YA+ A+
Sbjct: 37 STFATFNYYSKNSDTALKQEAAQPEVARDTAYYEANIGSVTSVDDFVNNYRLLNYAMTAY 96
Query: 63 GLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQ--HK 120
GLSD ++A+ +K++L SDLSD SLV +LN +Y A+++ P S +
Sbjct: 97 GLSDETNAKALVKQVLSSDLSDSSSLVYKLNDQRYLNLAKAFANLNPNDSAASYTAATTQ 156
Query: 121 TIIQDYKQSHQHKE----EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
++ Y + + + + + YF++N I S + D +L V + +
Sbjct: 157 QVVNSYLEQQLENDVGQQDEGTQLALYFQRNAANITSGYSILGDSQLWKVVQTVYDLPES 216
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDN-RFRAMAENFRFQPDGSLSKRDK 226
S+ + L K + +D + A+ + F D + S
Sbjct: 217 LGSIDINQQ---KDLVESKVNIADLQDPTKVSALLDRFSAVWDATNSSAAS 264
Score = 96.1 bits (237), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 69/172 (40%), Gaps = 2/172 (1%)
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
D + + ++ Y+ NI + SVD + RLL+Y + ++ ++ + + +K
Sbjct: 50 DTALKQEAAQPEVARDTAYYEANIGSVTSVDDFVNNYRLLNYAMTAYGLSDETNAKALVK 109
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENF-RFQPDGSLSKRDKILTDMQIEKIVSNYFNN 243
VL+ L++ + D R+ +A+ F P+ S + T + + N
Sbjct: 110 QVLSSDLSDSSSLVYKLNDQRYLNLAKAFANLNPNDSAASYTAATTQQVVNSYLEQQLEN 169
Query: 244 TI-DCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
+ Y++ +++S L D +L+K++Q + D
Sbjct: 170 DVGQQDEGTQLALYFQRNAANITSGYSILGDSQLWKVVQTVYDLPESLGSID 221
Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/255 (15%), Positives = 83/255 (32%), Gaps = 48/255 (18%)
Query: 336 KMLDLYKKNCQIL-----HDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPI 390
+ Y KN ++ Y+ +G + S+D+ ++
Sbjct: 40 ATFNYYSKNSDTALKQEAAQPEVARDTAYYEANIGSVTSVDDFVNN-------------Y 86
Query: 391 ITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAF-NFNADGS 449
L +A+ AY L+ + + ++ VL+S+ SD S K D R + L AF N N + S
Sbjct: 87 RLLNYAMTAYGLSDETNAKALVKQVLSSDLSDSSSLVYKLNDQRYLNLAKAFANLNPNDS 146
Query: 450 IGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTL 509
++ + ++ D + Y+
Sbjct: 147 AASYTAATTQQVVNSYLEQQLENDVGQQDEGTQL--------------------ALYFQR 186
Query: 510 NINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLC-------EIFKSDLKDPKSFAN 562
N I S +L + ++ + + D ++ +DL+DP +
Sbjct: 187 NAANITSGYSILGDSQLWKVVQTVYDLPESLGSIDINQQKDLVESKVNIADLQDPTKVSA 246
Query: 563 TYKDNRYKEIISSFN 577
+R+ + + N
Sbjct: 247 LL--DRFSAVWDATN 259
>gi|163850120|ref|YP_001638163.1| hypothetical protein Mext_0680 [Methylobacterium extorquens PA1]
gi|163661725|gb|ABY29092.1| protein of unknown function DUF1217 [Methylobacterium extorquens
PA1]
Length = 417
Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats.
Identities = 73/394 (18%), Positives = 134/394 (34%), Gaps = 60/394 (15%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
Y+ +G++K++D+LL + +A+ AY L + +R VL
Sbjct: 32 TAYYEAHIGRVKTVDDLLGDQR-------------LYAYAMKAYGLEDMTYAKAFMRKVL 78
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSI 476
+ S+AN+ DDR AF+F Q + + + R+
Sbjct: 79 EEGAASAASFANRLADDRYTAFAKAFSFG-----------QGVTATGADPARFGEQARAA 127
Query: 477 HDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI---------- 526
+ K S + + + S +D T TI + LA +
Sbjct: 128 SLSAPKLLADTYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAGQVANPAKVTPAEI 187
Query: 527 ------LNFLLESKGIDSQKVRED---FLCEIFKSDLKDPKSFANTYKD-------NRYK 570
KG + D F +DL ++ T +D
Sbjct: 188 AAAVAAQIEASALKGKVQAGLAADGSLFFETTALTDLGADGAYGGTGRDTDTLVNVGGPN 247
Query: 571 EIISSFNFDIHGELSHKKIG---KVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYF 627
++ N + + +G + + Y Q +E + + D + LALYF
Sbjct: 248 RTLTIRNAPLSANRTAVDVGFGTDLGPDSMAQAVTQAYLRQSLESEAGDADTGVRLALYF 307
Query: 628 KRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP---ERKKIRILKKHIKINDFKDS 684
R I + Y+ILGD+ L +V + + L K+ +++ I I F+D
Sbjct: 308 ARKASTIASAYDILGDAALSQVANTVIGLPATSGAATSEALAKRAQLIAGKIDIASFRDP 367
Query: 685 KKVEDFLYAA----KAMDHQSIDYKKALFSSPNQ 714
K++ F+ A ++ + ALF+
Sbjct: 368 AKLDAFVRRFAAIWDAQNNTASAPILALFTGTGS 401
Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/417 (15%), Positives = 128/417 (30%), Gaps = 51/417 (12%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M + + S + +P+V+ E YY I + T+D+ + D+RL++YA+K
Sbjct: 1 MTDTLTSYRLIAKDLPASLSRKAAEPMVARETAYYEAHIGRVKTVDDLLGDQRLYAYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDI--- 117
A+GL DM++A+ F++K+LE + S N+L +Y FA+++ F +D
Sbjct: 61 AYGLEDMTYAKAFMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQGVTATGADPARF 120
Query: 118 --QHKTIIQDYKQSHQHKEEVALEESKYF----RKNIHKINSVDQLFKDRRLLDYVLQSF 171
Q + + + + F R + SV + L V
Sbjct: 121 GEQARAASLSAPKLLADTYDFSGRAEASFLVESRLDATTTQSVTIRLNAQTLAGQVANPA 180
Query: 172 SITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSK-------- 223
+TP I+ + L + + + + F DG+
Sbjct: 181 KVTPAEIAAAVAAQIEASALKGKVQAGLAADGSLFFETTALTDLGADGAYGGTGRDTDTL 240
Query: 224 ----------------------------RDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN 255
+ D + + Y +++ +D
Sbjct: 241 VNVGGPNRTLTIRNAPLSANRTAVDVGFGTDLGPDSMAQAVTQAYLRQSLESEAGDADTG 300
Query: 256 -----YYKLAINSVSSFSDFLKDPKLFKMLQLSLF-PLNPEITADKFLTLMQENDPIVSQ 309
Y+ ++++S D L D L ++ + P + L +
Sbjct: 301 VRLALYFARKASTIASAYDILGDAALSQVANTVIGLPATSGAATSEALAKRAQLIAGKID 360
Query: 310 VKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGK 366
+ F D+Q ++L +G
Sbjct: 361 IASFRDPAKLDAFVRRFAAIWDAQNNTASAPILALFTGTGSLDAETLQSVQTARIGA 417
Score = 99 bits (247), Expect = 2e-18, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 45/97 (46%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ ++K + E YY +I + + ++LL ++R+ + +++ G++ +
Sbjct: 13 KDLPASLSRKAAEPMVARETAYYEAHIGRVKTVDDLLGDQRLYAYAMKAYGLEDMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIH 581
F+ ++ + SFAN D+RY +F+F
Sbjct: 73 FMRKVLEEGAASAASFANRLADDRYTAFAKAFSFGQG 109
>gi|254488868|ref|ZP_05102073.1| flagellar protein, putative [Roseobacter sp. GAI101]
gi|214045737|gb|EEB86375.1| flagellar protein, putative [Roseobacter sp. GAI101]
Length = 262
Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats.
Identities = 42/225 (18%), Positives = 93/225 (41%), Gaps = 21/225 (9%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ ++ ++E+ + +Y+ NI I + E L+ ++R+L L + G+
Sbjct: 19 TTYDRQFETFTKSVELKRDTEYFQKNIGAIETAEGLVKDRRLLTVTLGAFGLQDDINNRY 78
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDL 604
F+ ++ + + S AN + D RY E+ +F F + + G +
Sbjct: 79 FIRKVLEEGTTNDDSLANRFADPRYAELSKAFGFGPNESRKNGASG------FAAEISAK 132
Query: 605 YKHQMIEKKEEEKDPNIALALYFKRTIPNI--------RNHYEILGDSKLFKVVSKKLKL 656
++ E ++D + +ALY +R + +I + I+GD L + K L L
Sbjct: 133 FQANSFEVSTGDQDQAMRIALYAQRQLVDIAESDGSVDTKWFTIMGDPPLRNLFQKALNL 192
Query: 657 SPYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAA 694
F + +++ + K+ I F D++K+++ +
Sbjct: 193 PESFGQIDIDQQLGVFKERAKKAFGTEDIATFGDTEKLQELITKF 237
Score = 137 bits (344), Expect = 7e-30, Method: Composition-based stats.
Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 27/201 (13%)
Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKIL 78
F T +K + + Y+++ I I T + +KD+RL + L AFGL D + FI+K+L
Sbjct: 25 FETFTKSVELKRDTEYFQKNIGAIETAEGLVKDRRLLTVTLGAFGLQDDINNRYFIRKVL 84
Query: 79 ESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVAL 138
E ++ SL N+ +Y ++++ F P A
Sbjct: 85 EEGTTNDDSLANRFADPRYAELSKAFGFGPNES-----------------RKNGASGFAA 127
Query: 139 EESKYFRKNIHKINSVDQ-------LFKDRRLLDYVLQSFSITPKYISL---PFLKDVLT 188
E S F+ N ++++ DQ L+ R+L+D S+ K+ ++ P L+++
Sbjct: 128 EISAKFQANSFEVSTGDQDQAMRIALYAQRQLVDIAESDGSVDTKWFTIMGDPPLRNLFQ 187
Query: 189 LGLANPKKYFIESRDNRFRAM 209
L P+ + D +
Sbjct: 188 KALNLPESFGQIDIDQQLGVF 208
Score = 91.5 bits (225), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 9/172 (5%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
K +++YF+KNI I + + L KDRRLL L +F + + F++ VL G
Sbjct: 29 TKSVELKRDTEYFQKNIGAIETAEGLVKDRRLLTVTLGAFGLQDDINNRYFIRKVLEEGT 88
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFN-NTIDCVPI 250
N D R+ +++ F F P+ S K +N F +T D
Sbjct: 89 TNDDSLANRFADPRYAELSKAFGFGPNESRKNGASGFAAEISAKFQANSFEVSTGDQDQA 148
Query: 251 VSDQNYYKLAINSV--------SSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
+ Y + + + + + + DP L + Q +L D
Sbjct: 149 MRIALYAQRQLVDIAESDGSVDTKWFTIMGDPPLRNLFQKALNLPESFGQID 200
Score = 66.0 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 20/154 (12%)
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+Q D + + K + + +Q +G I++ + L+ + L
Sbjct: 17 LQTTYDRQFETFTKSVELKRDT--EYFQKNIGAIETAEGLVKDRR-------------LL 61
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNA-----DG 448
L A+ L +R +R VL ++ DS AN+ D R +L+ AF F +G
Sbjct: 62 TVTLGAFGLQDDINNRYFIRKVLEEGTTNDDSLANRFADPRYAELSKAFGFGPNESRKNG 121
Query: 449 SIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENK 482
+ G + ++ ++ +++ A
Sbjct: 122 ASGFAAEISAKFQANSFEVSTGDQDQAMRIALYA 155
>gi|170744539|ref|YP_001773194.1| hypothetical protein M446_6502 [Methylobacterium sp. 4-46]
gi|168198813|gb|ACA20760.1| protein of unknown function DUF1217 [Methylobacterium sp. 4-46]
Length = 429
Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats.
Identities = 84/423 (19%), Positives = 140/423 (33%), Gaps = 60/423 (14%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
+ +GK+KS+D+ + +A+ A+ L + +R VL
Sbjct: 32 TDYFTANIGKVKSVDDFMKDDR-------------LYAYAMRAHGLEEMIYAKAFMRRVL 78
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSI 476
T + P S+AN+ D R ++ F F D +T + +
Sbjct: 79 TEGVASPSSFANRLADQRYVEFARQFQFATD---VTAQGADPVMTGKTYADYRLGPAIPA 135
Query: 477 HDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKR----------- 525
+ S + I+S VD T TI + L +
Sbjct: 136 RLSGAFPLGQAMDFSDKVEARFTISSRVDATTTKSATIVLNKSTLRDAVSDLARVTPAEL 195
Query: 526 --ILNFLLESKG-------IDSQKVREDFL---CEIFKSDLKDPK-SFANTYKDNRYKEI 572
+N + + G + + + L F S D K Y D Y+
Sbjct: 196 VAAINSQIAASGEANLAGKVSASLGAKGELFLETTAFASLGPDGKPGGTGAYADVLYEGG 255
Query: 573 ISSFNFDIHG-------ELSHKKIGKVQDNFHIDDTCDL-YKHQMIEKKEEEKDPNIALA 624
I +L+ G L Y +Q IE+ E EKD + LA
Sbjct: 256 GQVRTITIQNLAPAEGRQLADVGFGSALPMSARAQRVTLAYLNQAIERDEGEKDTGVRLA 315
Query: 625 LYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPER---KKIRILKKHIKINDF 681
LYF R P + + Y+IL D L KV + L L ++ ++K+ I I F
Sbjct: 316 LYFTRMAPTLSSPYDILSDPALTKVANVVLGLPATSGAATSDALVRRAALIKQKIDIASF 375
Query: 682 KDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQNNVSLQLSPQKKSN 741
+D KV+ F+ A+ + + P F N+ + L ++S
Sbjct: 376 QDPAKVQAFVKRFAAIWDATN---------ADAESSPVLGLFPTSPNSQAENLGRLQRSR 426
Query: 742 GRF 744
+F
Sbjct: 427 AKF 429
Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/357 (18%), Positives = 121/357 (33%), Gaps = 63/357 (17%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M + + ++DI +K + + + V + Y+ I + ++D+F+KD RL++YA+
Sbjct: 1 MTSTFTSYQLLTRDI-TKTLTRKANEKTVRRDTDYFTANIGKVKSVDDFMKDDRLYAYAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQH 119
+A GL +M +A+ F++++L ++ P S N+L +Y FAR + F+ +D
Sbjct: 60 RAHGLEEMIYAKAFMRRVLTEGVASPSSFANRLADQRYVEFARQFQFATDVTAQGADPVM 119
Query: 120 KTII-QDYK----------------QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRR 162
DY+ Q+ ++V + R + S +
Sbjct: 120 TGKTYADYRLGPAIPARLSGAFPLGQAMDFSDKVEARFTISSRVDATTTKSATIVLNKST 179
Query: 163 LLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDG--- 219
L D V +TP + + G AN S + E F G
Sbjct: 180 LRDAVSDLARVTPAELVAAINSQIAASGEANLAGKVSASLGAKGELFLETTAFASLGPDG 239
Query: 220 ------------------------------------SLSKRDKILTDMQIEKIVSNYFNN 243
+ + + +++ Y N
Sbjct: 240 KPGGTGAYADVLYEGGGQVRTITIQNLAPAEGRQLADVGFGSALPMSARAQRVTLAYLNQ 299
Query: 244 TIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADK 295
I+ D Y+ ++SS D L DP L K+ + L A
Sbjct: 300 AIERDEGEKDTGVRLALYFTRMAPTLSSPYDILSDPALTKVANVVLGLPATSGAATS 356
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 45/108 (41%)
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
S + + + T+K + + DY+T NI + S ++ + + R+ + + +
Sbjct: 2 TSTFTSYQLLTRDITKTLTRKANEKTVRRDTDYFTANIGKVKSVDDFMKDDRLYAYAMRA 61
Query: 534 KGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIH 581
G++ + F+ + + P SFAN D RY E F F
Sbjct: 62 HGLEEMIYAKAFMRRVLTEGVASPSSFANRLADQRYVEFARQFQFATD 109
Score = 41.8 bits (96), Expect = 0.50, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 14/126 (11%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ + ++ + + D +Y+ I V S DF+KD +L+ + L I
Sbjct: 11 LTRDITKTLTRKANEKTVRRDTDYFTANIGKVKSVDDFMKDDRLYAY-AMRAHGLEEMIY 69
Query: 293 ADKFLTLMQEND-----------PIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLY 341
A F+ + V++ Q F D ++ K Y
Sbjct: 70 AKAFMRRVLTEGVASPSSFANRLADQRYVEFARQFQFATDVTAQG--ADPVMTGKTYADY 127
Query: 342 KKNCQI 347
+ I
Sbjct: 128 RLGPAI 133
>gi|149203152|ref|ZP_01880123.1| flagellar protein, putative [Roseovarius sp. TM1035]
gi|149143698|gb|EDM31734.1| flagellar protein, putative [Roseovarius sp. TM1035]
Length = 267
Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats.
Identities = 41/232 (17%), Positives = 92/232 (39%), Gaps = 21/232 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ E+ + + +I + +Y+ NI I + E L++++R+L L + G+ F
Sbjct: 21 TSERQTDLFNKSPQIVRDTEYFEQNIAKITTAEGLVSDRRLLRVALGAFGLQEDINSRAF 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ I + + AN D+RYK++ +F F + + I + Q + + + +
Sbjct: 81 IRAILEEGTIRDDAIANRLADDRYKQLSEAFAF------ADRPIPRTQLSTFGTEITEKF 134
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLS 657
+ + E +++ + LAL +R + +I + ILG+ L +V L L
Sbjct: 135 RRREFEVAVGDQNQALRLALNVQRELGDIAGDAETEDTRWFRILGNPPLRRVFEVALGLP 194
Query: 658 PYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAAKAMDHQSI 702
F +++ +K ++D E + + +
Sbjct: 195 DSFGQADLDRQLDEIKSRSAQQLKIGSLSDLSAESVREQLIQRFLLREQVAS 246
Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 17/193 (8%)
Query: 22 VSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESD 81
+K P + + Y+ + I I+T + + D+RL AL AFGL + ++ FI+ ILE
Sbjct: 29 FNKSPQIVRDTEYFEQNIAKITTAEGLVSDRRLLRVALGAFGLQEDINSRAFIRAILEEG 88
Query: 82 LSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEES 141
++ N+L +Y+ + ++ F+ P T I + + +
Sbjct: 89 TIRDDAIANRLADDRYKQLSEAFAFADRPIPRTQLSTFGTEITEKFRRRE---------- 138
Query: 142 KYFRKNIHKINSVDQLFKD--RRLLDYVLQSFSITPKYI---SLPFLKDVLTLGLANPKK 196
F + N +L + R L D + + ++ P L+ V + L P
Sbjct: 139 --FEVAVGDQNQALRLALNVQRELGDIAGDAETEDTRWFRILGNPPLRRVFEVALGLPDS 196
Query: 197 YFIESRDNRFRAM 209
+ D + +
Sbjct: 197 FGQADLDRQLDEI 209
Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 78/201 (38%), Gaps = 15/201 (7%)
Query: 123 IQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPF 182
+ + +K + +++YF +NI KI + + L DRRLL L +F + S F
Sbjct: 21 TSERQTDLFNKSPQIVRDTEYFEQNIAKITTAEGLVSDRRLLRVALGAFGLQEDINSRAF 80
Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQ----PDGSLSKRDKILTDMQIEKIVS 238
++ +L G D+R++ ++E F F P LS +T+ +
Sbjct: 81 IRAILEEGTIRDDAIANRLADDRYKQLSEAFAFADRPIPRTQLSTFGTEITEKFRRREFE 140
Query: 239 NYFNNTIDCVPIVSDQNYYKLAINSV--------SSFSDFLKDPKLFKMLQLSLFPLNPE 290
+ + + + + + + + + L +P L ++ +++L +
Sbjct: 141 VAVGDQNQALRLALN---VQRELGDIAGDAETEDTRWFRILGNPPLRRVFEVALGLPDSF 197
Query: 291 ITADKFLTLMQENDPIVSQVK 311
AD L + Q+K
Sbjct: 198 GQADLDRQLDEIKSRSAQQLK 218
Score = 62.2 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 335 QKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQ 394
++ DL+ K+ QI+ D + ++ + KI + + L+S + L+
Sbjct: 23 ERQTDLFNKSPQIVRDT------EYFEQNIAKITTAEGLVSDRR-------------LLR 63
Query: 395 FALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFN 445
AL A+ L R +R +L D+ AN+ DDR +L+ AF F
Sbjct: 64 VALGAFGLQEDINSRAFIRAILEEGTIRDDAIANRLADDRYKQLSEAFAFA 114
Score = 41.4 bits (95), Expect = 0.52, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 231 MQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPE 290
+ + + IV D Y++ I +++ + D +L ++ L F L +
Sbjct: 16 ALLSRTSERQTDLFNKSPQIVRDTEYFEQNIAKITTAEGLVSDRRLLRV-ALGAFGLQED 74
Query: 291 ITADKFLTLMQENDPIVSQV 310
I + F+ + E I
Sbjct: 75 INSRAFIRAILEEGTIRDDA 94
>gi|170744540|ref|YP_001773195.1| hypothetical protein M446_6503 [Methylobacterium sp. 4-46]
gi|168198814|gb|ACA20761.1| protein of unknown function DUF1217 [Methylobacterium sp. 4-46]
Length = 414
Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats.
Identities = 75/406 (18%), Positives = 126/406 (31%), Gaps = 50/406 (12%)
Query: 348 LHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
D + Y+ +GK+KS+D+L++ + +A+ AY L
Sbjct: 23 AADPVVARDTAYYEANIGKVKSVDDLMADQR-------------LYAYAMKAYGLEDMTY 69
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
+ +R VL +D S+AN+ D R + A + +
Sbjct: 70 AKAFMRKVLEGGVADASSFANRLADPRYVAFARA-------FDFAAGAASASGADGSISE 122
Query: 468 HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI- 526
+ + S + S +D T TI LA
Sbjct: 123 SGVVPPQPAQLTAPAALPDSTDFSGANEARFTLTSRLDATTTRSVTITLNAATLAGSAAD 182
Query: 527 ------------LNFLLESKGIDSQKVREDFLCEI-----FKSDLKDPKSFANTYKDNRY 569
+N + + G D + R F++ P F +
Sbjct: 183 LTRVTGAEIVAAINAQIAASGEDGLEDRVQVGLGARNELYFETTASAPDGFGTAVEAGGT 242
Query: 570 KEIISSFNFDIHGELSHKKI----GKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALAL 625
+S N + + + D Y Q +E E+D + LAL
Sbjct: 243 GRTLSVENAAPSAADRKAVGIGFGTALPPDAQVRTVTDAYLEQTLESDAGEEDTGLRLAL 302
Query: 626 YFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP---ERKKIRILKKHIKINDFK 682
YF R P + + Y+ILGD+ L KV + L + L I I F+
Sbjct: 303 YFARMAPTLTSAYDILGDAALSKVANTVAGLPATSGAATSEALDARAAFLAAKIDIAGFQ 362
Query: 683 DSKKVEDFLYAA----KAMDHQSIDYKKALFSSP-NQNKDPWNNSF 723
D KV+ F+ A + ALF++ DP + +
Sbjct: 363 DPAKVQAFVRRFAAIWDAQNSSGDSPILALFTTAGGGGADPLGSLY 408
Score = 131 bits (330), Expect = 4e-28, Method: Composition-based stats.
Identities = 60/329 (18%), Positives = 112/329 (34%), Gaps = 47/329 (14%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M + K + DP+V+ + YY I + ++D+ + D+RL++YA+K
Sbjct: 1 MTSTFTNYQLVARDLPKALQRKAADPVVARDTAYYEANIGKVKSVDDLMADQRLYAYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFS------------- 107
A+GL DM++A+ F++K+LE ++D S N+L +Y FAR++DF+
Sbjct: 61 AYGLEDMTYAKAFMRKVLEGGVADASSFANRLADPRYVAFARAFDFAAGAASASGADGSI 120
Query: 108 PPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLL--- 164
V+ T S + R + SV L
Sbjct: 121 SESGVVPPQPAQLTAPAALPDSTDFSGANEARFTLTSRLDATTTRSVTITLNAATLAGSA 180
Query: 165 --------DYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQ 216
++ + + L+D + +GL + + E+ +
Sbjct: 181 ADLTRVTGAEIVAAINAQIAASGEDGLEDRVQVGLGARNELYFETTASAPDGFGTAVEAG 240
Query: 217 PDGSLSK------------------RDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN--- 255
G + D Q+ + Y T++ D
Sbjct: 241 GTGRTLSVENAAPSAADRKAVGIGFGTALPPDAQVRTVTDAYLEQTLESDAGEEDTGLRL 300
Query: 256 --YYKLAINSVSSFSDFLKDPKLFKMLQL 282
Y+ +++S D L D L K+
Sbjct: 301 ALYFARMAPTLTSAYDILGDAALSKVANT 329
Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 45/96 (46%)
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
S + + +K + + + YY NI + S ++L+A++R+ + +++
Sbjct: 2 TSTFTNYQLVARDLPKALQRKAADPVVARDTAYYEANIGKVKSVDDLMADQRLYAYAMKA 61
Query: 534 KGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRY 569
G++ + F+ ++ + + D SFAN D RY
Sbjct: 62 YGLEDMTYAKAFMRKVLEGGVADASSFANRLADPRY 97
>gi|163744335|ref|ZP_02151695.1| hypothetical protein OIHEL45_02090 [Oceanibulbus indolifex HEL-45]
gi|161381153|gb|EDQ05562.1| hypothetical protein OIHEL45_02090 [Oceanibulbus indolifex HEL-45]
Length = 277
Score = 178 bits (450), Expect = 4e-42, Method: Composition-based stats.
Identities = 38/221 (17%), Positives = 90/221 (40%), Gaps = 5/221 (2%)
Query: 477 HDAENKSFNSMEQISTQKRINLEIN-SEVDYYTLNINTIHSFEELLANKRILNFLLESKG 535
K F++ N +N +++ + I I S +E +A+ + F++ +
Sbjct: 9 TQVAVKLFDATRDKQLDLVANDALNARQIEAFKERIGDIKSAKEFVADTEVYTFVMRAFD 68
Query: 536 IDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDN 595
++ Q + + ++ +S+ +P + N + + KE+ + F G S
Sbjct: 69 LEDQIFGKAMIRKVLESNSDEPSALVNRLSNPKIKEMYDTLGFAPGGGRS----FNFNRT 124
Query: 596 FHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLK 655
D+ D +K +++ E++ +AL FK I + ++L D+ L + + L
Sbjct: 125 GWQDEVIDRFKERIVLNSAGEENEGARIALEFKSKAGEINSWLDVLKDADLGSFMRRALG 184
Query: 656 LSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKA 696
+ + ++I + ++ I KD +V+ + A
Sbjct: 185 VPNEAIGVDLDRQIALFEQKFDIEKLKDPAEVDKLVSRFSA 225
Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ + VA + K V+ D + + + ++ERI I + EF+ D ++++ ++A
Sbjct: 7 MSTQVAVKLFDATRDKQLDLVANDALNARQIEAFKERIGDIKSAKEFVADTEVYTFVMRA 66
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPP-------KVIQ 114
F L D + I+K+LES+ +P +LVN+L++ K + + F+P +
Sbjct: 67 FDLEDQIFGKAMIRKVLESNSDEPSALVNRLSNPKIKEMYDTLGFAPGGGRSFNFNRTGW 126
Query: 115 SDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSIT 174
D + + +E + F+ +INS + KD L ++ ++ +
Sbjct: 127 QDEVIDRFKERIVLNSAGEENEGARIALEFKSKAGEINSWLDVLKDADLGSFMRRALGVP 186
Query: 175 PKYISLPFLKDV 186
+ I + + +
Sbjct: 187 NEAIGVDLDRQI 198
Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 9/199 (4%)
Query: 109 PPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL 168
Q ++ +D + + + + + F++ I I S + D + +V+
Sbjct: 5 GGMSTQVAVKLFDATRDKQLDLVANDALNARQIEAFKERIGDIKSAKEFVADTEVYTFVM 64
Query: 169 QSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDG------SLS 222
++F + + ++ VL P + + + M + F P G + +
Sbjct: 65 RAFDLEDQIFGKAMIRKVLESNSDEPSALVNRLSNPKIKEMYDTLGFAPGGGRSFNFNRT 124
Query: 223 KRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQL 282
+ D E+IV N + I + +K ++S+ D LKD L ++
Sbjct: 125 GWQDEVIDRFKERIVLNSAGEENEGARIALE---FKSKAGEINSWLDVLKDADLGSFMRR 181
Query: 283 SLFPLNPEITADKFLTLMQ 301
+L N I D +
Sbjct: 182 ALGVPNEAIGVDLDRQIAL 200
Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 68/203 (33%), Gaps = 31/203 (15%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
+ +D I+ ++ +G IKS ++ F + A++L Q
Sbjct: 27 VANDALNARQIEAFKERIGDIKSAKEFVADTE-------------VYTFVMRAFDLEDQI 73
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R VL SN +P + N+ + ++ ++ F G
Sbjct: 74 FGKAMIRKVLESNSDEPSALVNRLSNPKIKEMYDTLGFAPGGG----------------- 116
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRI 526
N R+ E + E + I+S+ ++L + +
Sbjct: 117 -RSFNFNRTGWQDEVIDRFKERIVLNSAGEENEGARIALEFKSKAGEINSWLDVLKDADL 175
Query: 527 LNFLLESKGIDSQKVREDFLCEI 549
+F+ + G+ ++ + D +I
Sbjct: 176 GSFMRRALGVPNEAIGVDLDRQI 198
>gi|255263694|ref|ZP_05343036.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255106029|gb|EET48703.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 262
Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 24/243 (9%)
Query: 492 TQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFK 551
T +I Y+ NI+ I + E L+A++++L L + G+D F+ I +
Sbjct: 26 TAFNEAPQIERATSYFRENISKITTAEALVADRQLLEVALGAFGLDDDINNTYFIKTILE 85
Query: 552 SDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIE 611
D + AN D+RYKE SF F + + DD + ++ E
Sbjct: 86 EGTLDDDALANRLADSRYKEFAESFGFG------DFSTPRTVLSTFPDDIINRFEAGQFE 139
Query: 612 KKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVL 663
+ E++P++ LAL F T+ +I ++I+G+ K+ L L FA +
Sbjct: 140 QAVGEQNPDLRLALNFSSTMESILATDSSNDVLWFKIMGNPPARKLFETALGLPASFAQI 199
Query: 664 PERKKIRILKKHI-------KINDFKDSKKVEDFLYAA---KAMDHQSIDYKKALFSSPN 713
+++ I K+ ++DF +D + MD + ++ +
Sbjct: 200 DIDRQLGIFKERSMSRFGTNSVSDFSSPDTQDDIIRNFLVLSEMDQFAQTSSGSIALALL 259
Query: 714 QNK 716
Q +
Sbjct: 260 QGQ 262
Score = 124 bits (310), Expect = 6e-26, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 98/242 (40%), Gaps = 11/242 (4%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+ D+Q F+ + P + Y+RE I I+T + + D++L AL AFGL D +
Sbjct: 20 TLDVQQTAFN---EAPQIERATSYFRENISKITTAEALVADRQLLEVALGAFGLDDDINN 76
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSH 130
FIK ILE D +L N+L +Y+ FA S+ F I + ++
Sbjct: 77 TYFIKTILEEGTLDDDALANRLADSRYKEFAESFGFGDFSTPRTVLSTFPDDIINRFEAG 136
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLG 190
Q ++ V E++ R ++ ++++ + D + K + P + +
Sbjct: 137 QFEQAVG-EQNPDLRLALNFSSTMESILATDSSNDV------LWFKIMGNPPARKLFETA 189
Query: 191 LANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPI 250
L P + + +R + + G+ S D D Q + I + + +D
Sbjct: 190 LGLPASFA-QIDIDRQLGIFKERSMSRFGTNSVSDFSSPDTQDDIIRNFLVLSEMDQFAQ 248
Query: 251 VS 252
S
Sbjct: 249 TS 250
Score = 68.0 bits (164), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 18/172 (10%)
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+++ LD+ + +++ ++ + KI + + L++ + L
Sbjct: 17 LERTLDVQQTAFN--EAPQIERATSYFRENISKITTAEALVADRQ-------------LL 61
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
+ AL A+ L+ + ++ +L D D+ AN+ D R + +F F G
Sbjct: 62 EVALGAFGLDDDINNTYFIKTILEEGTLDDDALANRLADSRYKEFAESFGF---GDFSTP 118
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVD 505
+ S + A + +N S+ L +S D
Sbjct: 119 RTVLSTFPDDIINRFEAGQFEQAVGEQNPDLRLALNFSSTMESILATDSSND 170
>gi|254471377|ref|ZP_05084779.1| flagellar basal-body rod protein flgf [Pseudovibrio sp. JE062]
gi|211959523|gb|EEA94721.1| flagellar basal-body rod protein flgf [Pseudovibrio sp. JE062]
Length = 365
Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats.
Identities = 75/391 (19%), Positives = 147/391 (37%), Gaps = 61/391 (15%)
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQD 406
D ++ IK Y+ K++++D+LL+ F + L
Sbjct: 21 TAKDPEIAREIKYYEENFSKVETVDDLLND-------------YRLYNFMMKTMGLEDMA 67
Query: 407 LDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ +R VL D + AN KD R +L AF FN DG+I
Sbjct: 68 YAKGMVRKVLVEGTDDSGALANTLKDKRFKELAEAFPFNKDGTI---------------- 111
Query: 467 KHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNI-NTIHSFEELLANKR 525
+ + ++E + +T +++ +Y+TL + + ++LA+
Sbjct: 112 -----KGKFDWESEGLDPRMVLWSNTPGEEVDDVDRLAEYFTLKMPRDVIFTTQILADPA 166
Query: 526 ILNFLLESKGIDSQKVREDFLCEIFKSDLK-DPKSFA--NTYKDN--RYKEIISSFNFDI 580
+ + + + + + I D D ++ + KD +Y++ N +I
Sbjct: 167 LYEVITVAFDVPEEIINGPKSERIDWFDENIDIEALKKPSELKDTIAKYRD-----NLEI 221
Query: 581 HGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEI 640
K + Y E+ E E++ + LAL F+RT NI + YEI
Sbjct: 222 READRTKG------------IVEQYIQVSFEEGEGEQNEGVRLALNFQRTGGNITSAYEI 269
Query: 641 LGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQ 700
LG L++VV L +S + ++ + I F+D ++V+ F+ +
Sbjct: 270 LGSPALYQVVRTVLGMSESMVGSDIDNQAAVINEKFDIKKFQDPEEVDKFVKKFVIL--- 326
Query: 701 SIDYKKALFSSPNQNKDPWNNSFDDPQNNVS 731
D + + ++P+ N P+N ++
Sbjct: 327 -YDAQNGIGTAPSVQLFASNPGVGIPENVLT 356
Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats.
Identities = 46/210 (21%), Positives = 96/210 (45%), Gaps = 8/210 (3%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ + + EI E+ YY N + + + ++LL + R+ NF++++ G++ +
Sbjct: 13 DLPGAKERTAKDPEIAREIKYYEENFSKVETVDDLLNDYRLYNFMMKTMGLEDMAYAKGM 72
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ D + ANT KD R+KE+ +F F+ G + K ++ +D L+
Sbjct: 73 VRKVLVEGTDDSGALANTLKDKRFKELAEAFPFNKDGTIKGKFD---WESEGLDPRMVLW 129
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIP-NIRNHYEILGDSKLFKVVSKKLKLSPYFAVLP 664
+ E E D LA YF +P ++ +IL D L++V++ + P
Sbjct: 130 SNTPGE----EVDDVDRLAEYFTLKMPRDVIFTTQILADPALYEVITVAFDVPEEIINGP 185
Query: 665 ERKKIRILKKHIKINDFKDSKKVEDFLYAA 694
+ ++I ++I I K +++D +
Sbjct: 186 KSERIDWFDENIDIEALKKPSELKDTIAKY 215
Score = 160 bits (405), Expect = 6e-37, Method: Composition-based stats.
Identities = 57/362 (15%), Positives = 140/362 (38%), Gaps = 24/362 (6%)
Query: 8 PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDM 67
++D+ +KDP ++ E +YY E + T+D+ + D RL+++ +K GL DM
Sbjct: 8 SMLNRDLPGAK-ERTAKDPEIAREIKYYEENFSKVETVDDLLNDYRLYNFMMKTMGLEDM 66
Query: 68 SHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQS-DIQHKTIIQDY 126
++A+ ++K+L D +L N L +++ A ++ F+ + D + + +
Sbjct: 67 AYAKGMVRKVLVEGTDDSGALANTLKDKRFKELAEAFPFNKDGTIKGKFDWESEGLDPRM 126
Query: 127 ---KQSHQHKEEVALEESKYFRKNIH-KINSVDQLFKDRRLLDYVLQSFSITPKYISLPF 182
+ + + ++YF + + Q+ D L + + +F + + I+ P
Sbjct: 127 VLWSNTPGEEVDDVDRLAEYFTLKMPRDVIFTTQILADPALYEVITVAFDVPEEIINGPK 186
Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFN 242
+ + + + + +R + + R K + + I+
Sbjct: 187 SERI--DWFDENIDIEALKKPSELKDTIAKYRDNLEIREADRTKGIVEQYIQVSFEEGEG 244
Query: 243 NTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
+ V + + ++ +++S + L P L+++++ L + +D
Sbjct: 245 EQNEGVRLALN---FQRTGGNITSAYEILGSPALYQVVRTVLGMSESMVGSD-------- 293
Query: 303 NDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQL 362
D + + F I +D K ++K + LY I +Q + +
Sbjct: 294 IDNQAAVINEKFDIKKFQDPEEVDKF-----VKKFVILYDAQNGIGTAPSVQLFASNPGV 348
Query: 363 PL 364
+
Sbjct: 349 GI 350
>gi|159045898|ref|YP_001534692.1| hypothetical protein Dshi_3358 [Dinoroseobacter shibae DFL 12]
gi|157913658|gb|ABV95091.1| protein of unknown function DUF1217 [Dinoroseobacter shibae DFL 12]
Length = 263
Score = 170 bits (430), Expect = 7e-40, Method: Composition-based stats.
Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 27/247 (10%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
++E + + E DY+ NI I + E+L+A++R+L F L + G+D+ + F
Sbjct: 21 TLEAQKEAFGQSTQYRREEDYFRANIGNIETAEQLVADRRLLAFSLSAFGLDADLPNKFF 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ +I D + +N D Y+E +F ++ K Q D+ Y
Sbjct: 81 IQKILSDGTSDNAALSNRLSDKTYREFSDAFGLGQG------QVRKTQQTSFADEIIQKY 134
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNH--------YEILGDSKLFKVVSKKLKLS 657
+ Q E+ + ++ LAL KR I ++ + + +LG L +L
Sbjct: 135 ETQKFEESVGNVNDDLRLALNLKREISDLASSDMSERAKLFTVLGSPPLRTTFETAFRLP 194
Query: 658 PYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAA------KAMDHQSIDY 704
FA L +++ +L++ + I+ FKD E + + + S
Sbjct: 195 SAFAGLDIDRQVTVLEEKLESAFGDASISQFKDPDLSERLIQKFLLQSELSSFEATSSPA 254
Query: 705 KKALFSS 711
ALF
Sbjct: 255 ATALFLL 261
Score = 111 bits (276), Expect = 6e-22, Method: Composition-based stats.
Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 13/191 (6%)
Query: 20 STVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILE 79
+ EE Y+R I +I T ++ + D+RL +++L AFGL + FI+KIL
Sbjct: 27 EAFGQSTQYRREEDYFRANIGNIETAEQLVADRRLLAFSLSAFGLDADLPNKFFIQKILS 86
Query: 80 SDLSDPKSLVNQLNSLKYQYFARSYDFSPPP-KVIQSDIQHKTIIQDYKQSHQHKEEVAL 138
SD +L N+L+ Y+ F+ ++ + Q IIQ Y+ + +
Sbjct: 87 DGTSDNAALSNRLSDKTYREFSDAFGLGQGQVRKTQQTSFADEIIQKYETQKFEESVGNV 146
Query: 139 EE----SKYFRKNIHKINSVD--------QLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+ + ++ I + S D + L +F + + L + V
Sbjct: 147 NDDLRLALNLKREISDLASSDMSERAKLFTVLGSPPLRTTFETAFRLPSAFAGLDIDRQV 206
Query: 187 LTLGLANPKKY 197
L +
Sbjct: 207 TVLEEKLESAF 217
Score = 73.0 bits (177), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 10/234 (4%)
Query: 127 KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
++ + E YFR NI I + +QL DRRLL + L +F + + F++ +
Sbjct: 25 QKEAFGQSTQYRREEDYFRANIGNIETAEQLVADRRLLAFSLSAFGLDADLPNKFFIQKI 84
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI- 245
L+ G ++ D +R ++ F + D I+K + F ++
Sbjct: 85 LSDGTSDNAALSNRLSDKTYREFSDAFGLGQGQVRKTQQTSFADEIIQKYETQKFEESVG 144
Query: 246 DCVPIVSDQNYYKLAINSVSSFS--------DFLKDPKLFKMLQLSLFPLNPEITADKFL 297
+ + K I+ ++S L P L + + + D
Sbjct: 145 NVNDDLRLALNLKREISDLASSDMSERAKLFTVLGSPPLRTTFETAFRLPSAFAGLDIDR 204
Query: 298 TLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDD 351
+ + + S F D S ++ Q +Q L ++
Sbjct: 205 QVTVLEEKLESAFGDASISQFK-DPDLSERLIQKFLLQSELSSFEATSSPAATA 257
Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 371 DNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKS 430
D + +E L F+L A+ L+ ++ ++ +L+ SD + +N+
Sbjct: 40 DYFRANIGNIETAEQLVADRRLLAFSLSAFGLDADLPNKFFIQKILSDGTSDNAALSNRL 99
Query: 431 KDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRK 473
D + + AF G + Q + ++ Y +K
Sbjct: 100 SDKTYREFSDAFGLGQ----GQVRKTQQTSFADEIIQKYETQK 138
Score = 37.5 bits (85), Expect = 9.3, Method: Composition-based stats.
Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 18/194 (9%)
Query: 246 DCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDP 305
+++Y++ I ++ + + D +L LS F L+ ++ F+ + +
Sbjct: 31 QSTQYRREEDYFRANIGNIETAEQLVADRRLLA-FSLSAFGLDADLPNKFFIQKILSDGT 89
Query: 306 I---------VSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKN---CQILHDDKM 353
+ F F K QQ S +++ Y+ + + +
Sbjct: 90 SDNAALSNRLSDKTYREFSDAFGLGQGQVRKTQQTSFADEIIQKYETQKFEESVGNVNDD 149
Query: 354 QSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD---AYNLNMQDLDRD 410
L + + + + S D +S + +L + T + A A+ D
Sbjct: 150 LRLALNLKREISDLASSD--MSERAKLFTVLGSPPLRTTFETAFRLPSAFAGLDIDRQVT 207
Query: 411 QLRNVLTSNPSDPD 424
L L S D
Sbjct: 208 VLEEKLESAFGDAS 221
>gi|254509607|ref|ZP_05121674.1| flagellar protein, putative [Rhodobacteraceae bacterium KLH11]
gi|221533318|gb|EEE36306.1| flagellar protein, putative [Rhodobacteraceae bacterium KLH11]
Length = 265
Score = 170 bits (429), Expect = 1e-39, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 88/216 (40%), Gaps = 21/216 (9%)
Query: 501 NSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSF 560
E DY+ NI + S E+L++++R+L L + G+++ F+ +I + +
Sbjct: 36 QRETDYFLENIGKVQSAEDLVSDRRLLQVALGAFGLEADLDNRFFIQKILSDGTQAEDAL 95
Query: 561 ANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPN 620
AN D RY++ ++F G++ + + D+ + E E D +
Sbjct: 96 ANRLADGRYRDFANAFGLGP-GDVRKTGLTNEMEKIASDNLVARF-----EISVGEADES 149
Query: 621 IALALYFKRTIPNIR--------NHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRIL 672
+ +AL+ + + I ++++G L ++ L L FA L K++ +
Sbjct: 150 MRIALFTQHALQEIAAQDGSENRKWFDLMGLPPLRSMMETALGLPSAFAQLDIDKQLEVF 209
Query: 673 KKHI-------KINDFKDSKKVEDFLYAAKAMDHQS 701
+ + ++ F DS+ + A +
Sbjct: 210 RDRLQRVTGSSDLSQFTDSEAIGKLTDTYLARSQIA 245
Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/245 (19%), Positives = 90/245 (36%), Gaps = 17/245 (6%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+ D Q + +S + E Y+ E I + + ++ + D+RL AL AFGL
Sbjct: 21 TYDAQLQSYSA---SNVNQRETDYFLENIGKVQSAEDLVSDRRLLQVALGAFGLEADLDN 77
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSH 130
FI+KIL +L N+L +Y+ FA ++ P D++ + + ++
Sbjct: 78 RFFIQKILSDGTQAEDALANRLADGRYRDFANAFGLGPG------DVRKTGLTNEMEKIA 131
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS---LPFLKDVL 187
E S +I LF L + Q S K+ LP L+ ++
Sbjct: 132 SDNLVARFEISVGEADESMRIA----LFTQHALQEIAAQDGSENRKWFDLMGLPPLRSMM 187
Query: 188 TLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDC 247
L P + D + + + + GS ++ + + + I
Sbjct: 188 ETALGLPSAFAQLDIDKQLEVFRDRLQ-RVTGSSDLSQFTDSEAIGKLTDTYLARSQIAQ 246
Query: 248 VPIVS 252
+ ++
Sbjct: 247 LQRIT 251
Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/218 (13%), Positives = 76/218 (34%), Gaps = 28/218 (12%)
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+Q+ D ++ + ++ ++ + +GK++S ++L+S + L
Sbjct: 18 LQRTYDAQLQSYSASNVNQRET--DYFLENIGKVQSAEDLVSDRR-------------LL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
Q AL A+ L +R ++ +L+ D+ AN+ D R +AF G +
Sbjct: 63 QVALGAFGLEADLDNRFFIQKILSDGTQAEDALANRLADGRYRDFANAFGLGP-GDVRKT 121
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINT 513
+ I + E+ Q + Q+ + + ++
Sbjct: 122 GLTNEMEKIASDNLVARFEISVGEADESMRIALFTQHALQEIAAQDGSENRKWF------ 175
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFK 551
+L+ + + + + G+ + + + +
Sbjct: 176 -----DLMGLPPLRSMMETALGL-PSAFAQLDIDKQLE 207
>gi|83944192|ref|ZP_00956648.1| hypothetical protein EE36_02633 [Sulfitobacter sp. EE-36]
gi|83845059|gb|EAP82940.1| hypothetical protein EE36_02633 [Sulfitobacter sp. EE-36]
Length = 274
Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats.
Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 3/204 (1%)
Query: 495 RINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDL 554
R + + + I I S EEL+A+ + +F++ + ++ Q + + ++ +SD
Sbjct: 28 RDSAANKRAEEAFRDRIGDISSPEELIADFEVYSFVMRAFDLEDQIFGKGLIRKMLESDP 87
Query: 555 KDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKE 614
+P S N D+R++E+ + F E + +F D T Y Q I + +
Sbjct: 88 VEPSSLLNRLTDSRFREMHLALGFTT--EAGPQTPDLTDPDFLNDVTTRFYNRQYINEND 145
Query: 615 EEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKK 674
++ + L F+ I N +E+L KL L L + L K+ +L
Sbjct: 146 A-QNETVGTVLEFRDKFSGINNWFEVLASEKLTNFFQVALSLPEQMSALDLDKQKALLAD 204
Query: 675 HIKINDFKDSKKVEDFLYAAKAMD 698
+ D + E + A+
Sbjct: 205 KFDLEKLADPAEREKLIARYVAIS 228
Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/218 (21%), Positives = 94/218 (43%), Gaps = 16/218 (7%)
Query: 10 PSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSH 69
++D Q L + + E +R+RI IS+ +E I D ++S+ ++AF L D
Sbjct: 18 ATRDKQLDLMRDSAAN---KRAEEAFRDRIGDISSPEELIADFEVYSFVMRAFDLEDQIF 74
Query: 70 AEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPP-----PKVIQSDIQHKTIIQ 124
+ I+K+LESD +P SL+N+L +++ + F+ P + D + +
Sbjct: 75 GKGLIRKMLESDPVEPSSLLNRLTDSRFREMHLALGFTTEAGPQTPDLTDPDFLNDVTTR 134
Query: 125 DYKQSHQHKEEVALEESKY---FRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLP 181
Y + + ++ + E FR IN+ ++ +L ++ + S+ + +L
Sbjct: 135 FYNRQYINENDAQNETVGTVLEFRDKFSGINNWFEVLASEKLTNFFQVALSLPEQMSALD 194
Query: 182 FLK-DVLTLGLANPKKYFI----ESRDNRFRAMAENFR 214
K L + +K E R+ A+++
Sbjct: 195 LDKQKALLADKFDLEKLADPAEREKLIARYVAISDAVN 232
Score = 90.7 bits (223), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 4/188 (2%)
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+D + + FR I I+S ++L D + +V+++F + +
Sbjct: 17 DATRDKQLDLMRDSAANKRAEEAFRDRIGDISSPEELIADFEVYSFVMRAFDLEDQIFGK 76
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRD----KILTDMQIEKI 236
++ +L P D+RFR M F + D L D+
Sbjct: 77 GLIRKMLESDPVEPSSLLNRLTDSRFREMHLALGFTTEAGPQTPDLTDPDFLNDVTTRFY 136
Query: 237 VSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKF 296
Y N V ++ + ++++ + L KL Q++L D
Sbjct: 137 NRQYINENDAQNETVGTVLEFRDKFSGINNWFEVLASEKLTNFFQVALSLPEQMSALDLD 196
Query: 297 LTLMQEND 304
D
Sbjct: 197 KQKALLAD 204
Score = 70.7 bits (171), Expect = 9e-10, Method: Composition-based stats.
Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 35/235 (14%)
Query: 348 LHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
+ + ++ +G I S + L++ F + A++L Q
Sbjct: 28 RDSAANKRAEEAFRDRIGDISSPEELIAD-------------FEVYSFVMRAFDLEDQIF 74
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
+ +R +L S+P +P S N+ D R +++ A F + + +
Sbjct: 75 GKGLIRKMLESDPVEPSSLLNRLTDSRFREMHLALGFTTEAGPQTPDLTDPDFLNDVTTR 134
Query: 468 HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRIL 527
Y + + +DA+N++ ++ + + + I+++ E+LA++++
Sbjct: 135 FYNRQYINENDAQNETVGTVLE-----------------FRDKFSGINNWFEVLASEKLT 177
Query: 528 NFLLESKGIDSQKVREDF-LCEIFKSDLKDPKSFANTYKD----NRYKEIISSFN 577
NF + + Q D + +D D + A+ + RY I + N
Sbjct: 178 NFFQVALSLPEQMSALDLDKQKALLADKFDLEKLADPAEREKLIARYVAISDAVN 232
>gi|89056691|ref|YP_512142.1| flagellar protein, putative [Jannaschia sp. CCS1]
gi|88866240|gb|ABD57117.1| flagellar protein putative [Jannaschia sp. CCS1]
Length = 265
Score = 168 bits (424), Expect = 4e-39, Method: Composition-based stats.
Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 22/236 (9%)
Query: 482 KSFNSMEQISTQKRINLEIN-SEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540
K S + + + + +Y+ NI + S E+L+ + R+L L + G+
Sbjct: 16 KVLQSTLDVQQTRFAEDPVQSRDREYFRENIGAVSSAEDLVGDYRLLRVALGAFGLQDDL 75
Query: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600
F+ ++ + D + +N D Y+ +F F Q D
Sbjct: 76 PNRAFVEKVLSDGVLDDDALSNKLADKTYRAFAEAFGFGSP------LPPLTQGPGFADK 129
Query: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSK 652
+ Q E E+D ++ LAL R +P I + +LG L +V
Sbjct: 130 ILARFDEQAFEVAVGEQDTDMRLALEATREVPGIASADTSDTTAWLTVLGKPSLRQVFET 189
Query: 653 KLKLSPYFAVLPERKKIRILK-------KHIKINDFKDSKKVEDFLYAAKAMDHQS 701
L L K++ + + +D VED + A +
Sbjct: 190 AFALPSSIGTLDLDKQLDAFRGGAERVLGSSEFAALQDPTVVEDLVQAFTLQSQAA 245
Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 21/226 (9%)
Query: 10 PSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSH 69
+ D+Q ++DP+ S + Y+RE I +S+ ++ + D RL AL AFGL D
Sbjct: 20 STLDVQQT---RFAEDPVQSRDREYFRENIGAVSSAEDLVGDYRLLRVALGAFGLQDDLP 76
Query: 70 AEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPP-PKVIQSDIQHKTII----Q 124
F++K+L + D +L N+L Y+ FA ++ F P P + Q I+ +
Sbjct: 77 NRAFVEKVLSDGVLDDDALSNKLADKTYRAFAEAFGFGSPLPPLTQGPGFADKILARFDE 136
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVD--------QLFKDRRLLDYVLQSFSITPK 176
+ +++ + + + + I S D + L +F++
Sbjct: 137 QAFEVAVGEQDTDMRLALEATREVPGIASADTSDTTAWLTVLGKPSLRQVFETAFALPSS 196
Query: 177 YISLPFLKDV-----LTLGLANPKKYFIESRDNRFRAMAENFRFQP 217
+L K + + ++ + + F Q
Sbjct: 197 IGTLDLDKQLDAFRGGAERVLGSSEFAALQDPTVVEDLVQAFTLQS 242
Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 9/179 (5%)
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
D +Q+ ++ V + +YFR+NI ++S + L D RLL L +F + + F++
Sbjct: 23 DVQQTRFAEDPVQSRDREYFRENIGAVSSAEDLVGDYRLLRVALGAFGLQDDLPNRAFVE 82
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNT 244
VL+ G+ + + D +RA AE F F + D + + F
Sbjct: 83 KVLSDGVLDDDALSNKLADKTYRAFAEAFGFGSPLPPLTQGPGFADKILARFDEQAFEVA 142
Query: 245 I-DCVPIVSDQNYYKLAINSVSSFS--------DFLKDPKLFKMLQLSLFPLNPEITAD 294
+ + + + ++S L P L ++ + + + T D
Sbjct: 143 VGEQDTDMRLALEATREVPGIASADTSDTTAWLTVLGKPSLRQVFETAFALPSSIGTLD 201
Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/276 (16%), Positives = 87/276 (31%), Gaps = 51/276 (18%)
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+Q LD+ + D + ++ +G + S ++L+ L
Sbjct: 18 LQSTLDVQQTRFA--EDPVQSRDREYFRENIGAVSSAEDLVGD-------------YRLL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
+ AL A+ L +R + VL+ D D+ +NK D AF F +
Sbjct: 63 RVALGAFGLQDDLPNRAFVEKVLSDGVLDDDALSNKLADKTYRAFAEAFGFGS----PLP 118
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINT 513
P+ Q + + + + E T R+ LE EV
Sbjct: 119 PLTQGPGFADKILARFDEQAFEVAVGEQ---------DTDMRLALEATREVP-------G 162
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEII 573
I S + ++ +L + L ++F++ P S D +
Sbjct: 163 IASAD--TSDTTAWLTVLG----------KPSLRQVFETAFALPSSIGTLDLDKQL---- 206
Query: 574 SSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQM 609
+F L + +QD ++D + Q
Sbjct: 207 DAFRGGAERVLGSSEFAALQDPTVVEDLVQAFTLQS 242
>gi|221634512|ref|YP_002523200.1| hypothetical protein RSKD131_4487 [Rhodobacter sphaeroides KD131]
gi|221163385|gb|ACM04347.1| Hypothetical Protein RSKD131_4487 [Rhodobacter sphaeroides KD131]
Length = 262
Score = 168 bits (424), Expect = 4e-39, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 21/224 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ME+ + ++ EV Y+ I T+ + E+L+++ R+L L + G+ +
Sbjct: 21 TMERQRDSHDQSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKAL 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ D + AN D R+ + +F+F D Y
Sbjct: 81 IRKVLGEGAADKGALANRLSDKRWLALAKAFDF------GGASGAGTGTAGFADRIAGQY 134
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLS 657
+ Q E E D N+ LAL R + + + + +LG + L V L
Sbjct: 135 RTQSFEAAIGEVDANLGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLP 194
Query: 658 PYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAA 694
FA L +++ I + + F K E +
Sbjct: 195 REFAALDLDRQVEIYQDRAARMFGSGSASQFAAEDKRETLIKTF 238
Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 13/176 (7%)
Query: 24 KDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLS 83
+ V E Y+ E+I + T ++ + D RL AL AFGL + + + I+K+L +
Sbjct: 31 QSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLGEGAA 90
Query: 84 DPKSLVNQLNSLKYQYFARSYDFSPPPKVIQ-----SDIQHKTIIQDYKQSHQHKEEVAL 138
D +L N+L+ ++ A+++DF +D ++ + + L
Sbjct: 91 DKGALANRLSDKRWLALAKAFDFGGASGAGTGTAGFADRIAGQYRTQSFEAAIGEVDANL 150
Query: 139 EESKYFRKNIHKINSVD--------QLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+ + + + S D + L +F + ++ +L + V
Sbjct: 151 GLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQV 206
Score = 83.8 bits (205), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 9/208 (4%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
+ + E YF + I + + + L D RLL L +F + ++ VL G
Sbjct: 30 DQSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLGEGA 89
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI-DCVPI 250
A+ D R+ A+A+ F F D + + F I +
Sbjct: 90 ADKGALANRLSDKRWLALAKAFDFGGASGAGTGTAGFADRIAGQYRTQSFEAAIGEVDAN 149
Query: 251 VSDQNYYKLAINSVSS--------FSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
+ + +++S + L L + + D +
Sbjct: 150 LGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQVEIY 209
Query: 303 NDPIVSQVKYFFQINFHRDNSSSTKIQQ 330
D F ++ T I+
Sbjct: 210 QDRAARMFGSGSASQFAAEDKRETLIKT 237
Score = 63.7 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 27/216 (12%)
Query: 336 KMLDLYKKNCQILHDDKMQSL--IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+ L + + HD Q + + +G +++ ++L+S L
Sbjct: 16 RFLGRTMERQRDSHDQSQQVQREVAYFAEKIGTVRTPEDLVSD-------------YRLL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
+ AL A+ L + +R VL +D + AN+ D R + L AF+F G
Sbjct: 63 KVALGAFGLGEAINGKALIRKVLGEGAADKGALANRLSDKRWLALAKAFDFGGASGAGTG 122
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINT 513
+ I + + N + +++ E +++
Sbjct: 123 TAGFAD-RIAGQYRTQSFEAAIGEVDANLGLALTLDREMATLASDDMSEEAKWFS----- 176
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
+L + + + G+ + D ++
Sbjct: 177 ------VLGSTSLRAVFDGAFGLPREFAALDLDRQV 206
Score = 47.9 bits (112), Expect = 0.006, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 55/196 (28%), Gaps = 21/196 (10%)
Query: 235 KIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
+ + ++ + + Y+ I +V + D + D +L K+ +
Sbjct: 20 RTMERQRDSHDQSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKA 79
Query: 295 KFLTLMQENDPIVSQVKY--------FFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQ 346
++ E + F +S ++ Y+
Sbjct: 80 LIRKVLGEGAADKGALANRLSDKRWLALAKAFDFGGASGAGTGTAGFADRIAGQYRTQ-- 137
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD-----AYN 401
++ I + LG ++D ++ + A+ + +L A+
Sbjct: 138 -----SFEAAIGEVDANLGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFG 192
Query: 402 LNMQDLDRDQLRNVLT 417
L ++ L +
Sbjct: 193 L-PREFAALDLDRQVE 207
>gi|126464886|ref|YP_001041862.1| hypothetical protein Rsph17029_4159 [Rhodobacter sphaeroides ATCC
17029]
gi|126106701|gb|ABN79226.1| protein of unknown function DUF1217 [Rhodobacter sphaeroides ATCC
17029]
Length = 262
Score = 168 bits (424), Expect = 4e-39, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 21/224 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ME+ + ++ EV Y+ I T+ + E+L+++ R+L L + G+ +
Sbjct: 21 TMERQRDSHDQSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKAL 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ D + AN D R+ + +F+F D Y
Sbjct: 81 IRKVLGEGAADKGALANRLSDKRWLALAKAFDF------GGTSGAGTGTAGFADRIAGQY 134
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLS 657
+ Q E E D N+ LAL R + + + + +LG + L V L
Sbjct: 135 RTQSFEAAIGEVDANLGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLP 194
Query: 658 PYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAA 694
FA L +++ I + + F K E +
Sbjct: 195 REFAALDLDRQVEIYQDRTARMFGSGSASQFAAEDKRETLIKTF 238
Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 13/176 (7%)
Query: 24 KDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLS 83
+ V E Y+ E+I + T ++ + D RL AL AFGL + + + I+K+L +
Sbjct: 31 QSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLGEGAA 90
Query: 84 DPKSLVNQLNSLKYQYFARSYDFSPPPKVIQ-----SDIQHKTIIQDYKQSHQHKEEVAL 138
D +L N+L+ ++ A+++DF +D ++ + + L
Sbjct: 91 DKGALANRLSDKRWLALAKAFDFGGTSGAGTGTAGFADRIAGQYRTQSFEAAIGEVDANL 150
Query: 139 EESKYFRKNIHKINSVD--------QLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+ + + + S D + L +F + ++ +L + V
Sbjct: 151 GLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQV 206
Score = 84.5 bits (207), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 9/208 (4%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
+ + E YF + I + + + L D RLL L +F + ++ VL G
Sbjct: 30 DQSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLGEGA 89
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI-DCVPI 250
A+ D R+ A+A+ F F D + + F I +
Sbjct: 90 ADKGALANRLSDKRWLALAKAFDFGGTSGAGTGTAGFADRIAGQYRTQSFEAAIGEVDAN 149
Query: 251 VSDQNYYKLAINSVSS--------FSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
+ + +++S + L L + + D +
Sbjct: 150 LGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQVEIY 209
Query: 303 NDPIVSQVKYFFQINFHRDNSSSTKIQQ 330
D F ++ T I+
Sbjct: 210 QDRTARMFGSGSASQFAAEDKRETLIKT 237
Score = 64.1 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 27/216 (12%)
Query: 336 KMLDLYKKNCQILHDDKMQSL--IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+ L + + HD Q + + +G +++ ++L+S L
Sbjct: 16 RFLGRTMERQRDSHDQSQQVQREVAYFAEKIGTVRTPEDLVSD-------------YRLL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
+ AL A+ L + +R VL +D + AN+ D R + L AF+F G
Sbjct: 63 KVALGAFGLGEAINGKALIRKVLGEGAADKGALANRLSDKRWLALAKAFDFGGTSGAGTG 122
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINT 513
+ I + + N + +++ E +++
Sbjct: 123 TAGFAD-RIAGQYRTQSFEAAIGEVDANLGLALTLDREMATLASDDMSEEAKWFS----- 176
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
+L + + + G+ + D ++
Sbjct: 177 ------VLGSTSLRAVFDGAFGLPREFAALDLDRQV 206
Score = 47.9 bits (112), Expect = 0.006, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 55/196 (28%), Gaps = 21/196 (10%)
Query: 235 KIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
+ + ++ + + Y+ I +V + D + D +L K+ +
Sbjct: 20 RTMERQRDSHDQSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKA 79
Query: 295 KFLTLMQENDPIVSQVKY--------FFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQ 346
++ E + F +S ++ Y+
Sbjct: 80 LIRKVLGEGAADKGALANRLSDKRWLALAKAFDFGGTSGAGTGTAGFADRIAGQYRTQ-- 137
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD-----AYN 401
++ I + LG ++D ++ + A+ + +L A+
Sbjct: 138 -----SFEAAIGEVDANLGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFG 192
Query: 402 LNMQDLDRDQLRNVLT 417
L ++ L +
Sbjct: 193 L-PREFAALDLDRQVE 207
>gi|83955108|ref|ZP_00963764.1| hypothetical protein NAS141_03346 [Sulfitobacter sp. NAS-14.1]
gi|83840437|gb|EAP79610.1| hypothetical protein NAS141_03346 [Sulfitobacter sp. NAS-14.1]
Length = 274
Score = 168 bits (424), Expect = 4e-39, Method: Composition-based stats.
Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 3/204 (1%)
Query: 495 RINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDL 554
R + + + I I S EEL+A+ + +F++ + ++ Q + + ++ +SD
Sbjct: 28 RDSAANKRAEEAFRNRIGDISSPEELIADFEVYSFVMRAFDLEDQIFGKGLIRKMLESDP 87
Query: 555 KDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKE 614
+P S N D+R++E+ + F E + +F D T Y Q I + +
Sbjct: 88 VEPSSLLNRLTDSRFREMHLALGFTT--EAGPQTPDLTDPDFLNDVTTRFYNRQYINEND 145
Query: 615 EEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKK 674
++ + L F+ I N +E+L + KL L L + L K+ +L
Sbjct: 146 A-QNETVGTVLEFRDKFSGINNWFEVLANEKLTNFFQVALSLPEQMSALDLDKQKALLAD 204
Query: 675 HIKINDFKDSKKVEDFLYAAKAMD 698
+ D + E+ + A+
Sbjct: 205 KFDLEKLADPAERENLIARYVAIS 228
Score = 127 bits (319), Expect = 7e-27, Method: Composition-based stats.
Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 16/218 (7%)
Query: 10 PSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSH 69
++D Q L + + E +R RI IS+ +E I D ++S+ ++AF L D
Sbjct: 18 ATRDKQLDLMRDSAAN---KRAEEAFRNRIGDISSPEELIADFEVYSFVMRAFDLEDQIF 74
Query: 70 AEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPP-----PKVIQSDIQHKTIIQ 124
+ I+K+LESD +P SL+N+L +++ + F+ P + D + +
Sbjct: 75 GKGLIRKMLESDPVEPSSLLNRLTDSRFREMHLALGFTTEAGPQTPDLTDPDFLNDVTTR 134
Query: 125 DYKQSHQHKEEVALEESKY---FRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLP 181
Y + + ++ + E FR IN+ ++ + +L ++ + S+ + +L
Sbjct: 135 FYNRQYINENDAQNETVGTVLEFRDKFSGINNWFEVLANEKLTNFFQVALSLPEQMSALD 194
Query: 182 FLK-DVLTLGLANPKKYFI----ESRDNRFRAMAENFR 214
K L + +K E+ R+ A+++
Sbjct: 195 LDKQKALLADKFDLEKLADPAERENLIARYVAISDAVN 232
Score = 92.2 bits (227), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 4/188 (2%)
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+D + + FR I I+S ++L D + +V+++F + +
Sbjct: 17 DATRDKQLDLMRDSAANKRAEEAFRNRIGDISSPEELIADFEVYSFVMRAFDLEDQIFGK 76
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRD----KILTDMQIEKI 236
++ +L P D+RFR M F + D L D+
Sbjct: 77 GLIRKMLESDPVEPSSLLNRLTDSRFREMHLALGFTTEAGPQTPDLTDPDFLNDVTTRFY 136
Query: 237 VSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKF 296
Y N V ++ + ++++ + L + KL Q++L D
Sbjct: 137 NRQYINENDAQNETVGTVLEFRDKFSGINNWFEVLANEKLTNFFQVALSLPEQMSALDLD 196
Query: 297 LTLMQEND 304
D
Sbjct: 197 KQKALLAD 204
Score = 74.9 bits (182), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 87/237 (36%), Gaps = 39/237 (16%)
Query: 348 LHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
+ + ++ +G I S + L++ F + A++L Q
Sbjct: 28 RDSAANKRAEEAFRNRIGDISSPEELIAD-------------FEVYSFVMRAFDLEDQIF 74
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
+ +R +L S+P +P S N+ D R +++ A F + + +
Sbjct: 75 GKGLIRKMLESDPVEPSSLLNRLTDSRFREMHLALGFTTEAGPQTPDLTDPDFLNDVTTR 134
Query: 468 HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRIL 527
Y + + +DA+N++ ++ + + + I+++ E+LAN+++
Sbjct: 135 FYNRQYINENDAQNETVGTVLE-----------------FRDKFSGINNWFEVLANEKLT 177
Query: 528 NFLLESKGIDSQKVREDF-LCEIFKSD------LKDPKSFANTYKDNRYKEIISSFN 577
NF + + Q D + +D L DP N RY I + N
Sbjct: 178 NFFQVALSLPEQMSALDLDKQKALLADKFDLEKLADPAERENLIA--RYVAISDAVN 232
>gi|260574408|ref|ZP_05842412.1| protein of unknown function DUF1217 [Rhodobacter sp. SW2]
gi|259023304|gb|EEW26596.1| protein of unknown function DUF1217 [Rhodobacter sp. SW2]
Length = 267
Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats.
Identities = 39/224 (17%), Positives = 87/224 (38%), Gaps = 21/224 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+M E +Y+ NI I + E L++++++L L + G+D+ + F
Sbjct: 21 TMTTQKAAFAAVSTSKREEEYFRANIGKIKTAEALVSDRKLLKVALGAFGLDADINSKAF 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ + + AN D +Y+ + F F + Q + D+ Y
Sbjct: 81 IQKVLEGGTLKTGALANKLADKQYQAFSAGFGFG------DFATPRTQLSTFADEILTAY 134
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNI--------RNHYEILGDSKLFKVVSKKLKLS 657
K++ E E++ ++ LA+ +R + + + ++G L V K L
Sbjct: 135 KNRQFETAVGEQNDDMRLAMNVERELVTLAGKSTTEDAKWFTVMGSKPLRAVFEKAFGLP 194
Query: 658 PYFAVLPERKKIRILKKHIK-------INDFKDSKKVEDFLYAA 694
A L +++ + K ++ F D+ K++ +
Sbjct: 195 SSLAALDLDQQLSVFKSAANKAFGATSVSQFADTTKLDKLVKQF 238
Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 15/217 (6%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ + K + + + EE Y+R I I T + + D++L AL A
Sbjct: 9 LGGYAGWSLLKRTMTTQKAAFAAVSTSKREEEYFRANIGKIKTAEALVSDRKLLKVALGA 68
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKV-IQSDIQHK 120
FGL +++ FI+K+LE +L N+L +YQ F+ + F Q
Sbjct: 69 FGLDADINSKAFIQKVLEGGTLKTGALANKLADKQYQAFSAGFGFGDFATPRTQLSTFAD 128
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS- 179
I+ YK + N+ +R L+ +S + K+ +
Sbjct: 129 EILTAYKNRQFETAVGEQNDDMRLAMNV-----------ERELVTLAGKSTTEDAKWFTV 177
Query: 180 --LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFR 214
L+ V P D +
Sbjct: 178 MGSKPLRAVFEKAFGLPSSLAALDLDQQLSVFKSAAN 214
Score = 77.2 bits (188), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 81/245 (33%), Gaps = 19/245 (7%)
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
+++ + E +YFR NI KI + + L DR+LL L +F + S F++
Sbjct: 23 TTQKAAFAAVSTSKREEEYFRANIGKIKTAEALVSDRKLLKVALGAFGLDADINSKAFIQ 82
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTD----MQIEKIVSNY 240
VL G + D +++A + F F + + D +
Sbjct: 83 KVLEGGTLKTGALANKLADKQYQAFSAGFGFGDFATPRTQLSTFADEILTAYKNRQFETA 142
Query: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSD-----FLKDPKLFKMLQLSLFPLNPEITADK 295
D + + + + + S+ D + L + + + + D
Sbjct: 143 VGEQNDDMRLAMNVERELVTLAGKSTTEDAKWFTVMGSKPLRAVFEKAFGLPSSLAALDL 202
Query: 296 FLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQS 355
D +S K F +S ++ +++ K++ + ++ S
Sbjct: 203 --------DQQLSVFKSAANKAFGA--TSVSQFADTTKLDKLVKQFLIRSEVAAGMTSTS 252
Query: 356 LIKDY 360
+
Sbjct: 253 GASNA 257
Score = 58.7 bits (140), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 51/302 (16%)
Query: 332 SQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPII 391
S +++ + K + K + + ++ +GKIK+ + L+S +
Sbjct: 16 SLLKRTMTTQKAAFAAVSTSKRE--EEYFRANIGKIKTAEALVSDRK------------- 60
Query: 392 TLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIG 451
L+ AL A+ L+ + ++ VL + ANK D + + F F G
Sbjct: 61 LLKVALGAFGLDADINSKAFIQKVLEGGTLKTGALANKLADKQYQAFSAGFGF---GDFA 117
Query: 452 PIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNI 511
++L+ + A + R A + + M +R + + +
Sbjct: 118 TPR---TQLSTFADEILTAYKNRQFETAVGEQNDDMRLAMNVERELVTLAGKSTTEDAKW 174
Query: 512 NTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKE 571
T+ + +K + ++ G+ P S A D +
Sbjct: 175 FTV------MGSKPLRAVFEKAFGL--------------------PSSLAALDLDQQL-- 206
Query: 572 IISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTI 631
S F + + + D +D + + + AL + +
Sbjct: 207 --SVFKSAANKAFGATSVSQFADTTKLDKLVKQFLIRSEVAAGMTSTSGASNALQLLQAM 264
Query: 632 PN 633
Sbjct: 265 QG 266
Score = 41.8 bits (96), Expect = 0.40, Method: Composition-based stats.
Identities = 35/263 (13%), Positives = 77/263 (29%), Gaps = 34/263 (12%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+++ ++ ++ Y++ I + + + D KL K+ L F L+ +I
Sbjct: 18 LKRTMTTQKAAFAAVSTSKREEEYFRANIGKIKTAEALVSDRKLLKV-ALGAFGLDADIN 76
Query: 293 ADKFLTLMQENDPIVSQVKY---------FFQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
+ F+ + E + + F F + ++ + Q + ++L YK
Sbjct: 77 SKAFIQKVLEGGTLKTGALANKLADKQYQAFSAGFGFGDFATPRTQLSTFADEILTAYKN 136
Query: 344 NCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLN 403
++ + + + +++ L A+ + L A
Sbjct: 137 RQ-------FETAVGEQNDDMRLAMNVERELVTLAGKSTTEDAKWFTVMGSKPLRA---- 185
Query: 404 MQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIR 463
V P S A D +L A N + +
Sbjct: 186 -----------VFEKAFGLPSSLAALDLDQQLSVFKSAAN--KAFGATSVSQFADTTKLD 232
Query: 464 DNVKHYANRKRSIHDAENKSFNS 486
VK + R + S S
Sbjct: 233 KLVKQFLIRSEVAAGMTSTSGAS 255
>gi|125654647|ref|YP_001033841.1| flagellar basal-body rod protein FLGF [Rhodobacter sphaeroides
2.4.1]
gi|77386307|gb|ABA81736.1| possible flagellar basal-body ROD protein FLGF [Rhodobacter
sphaeroides 2.4.1]
Length = 262
Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats.
Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 21/224 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ME+ + ++ EV Y+ I T+ + E+L+++ R+L L + G+ +
Sbjct: 21 TMERQRDSHDQSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKAL 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ D + AN D R+ + +F+F D Y
Sbjct: 81 IRKVLNEGAADKGALANRLSDKRWLALAKAFDF------GGASGAGTGTAGFADRIAGQY 134
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLS 657
+ Q E E D N+ LAL + + + + +LG + L V L
Sbjct: 135 RTQSFEAAIGEVDANLGLALTLDHEMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLP 194
Query: 658 PYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAA 694
FA L +++ I + + F K E +
Sbjct: 195 REFAALDLDRQVEIYQDRTARMFGSGSASQFAAEDKRETLIKTF 238
Score = 124 bits (311), Expect = 5e-26, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 69/176 (39%), Gaps = 13/176 (7%)
Query: 24 KDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLS 83
+ V E Y+ E+I + T ++ + D RL AL AFGL + + + I+K+L +
Sbjct: 31 QSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLNEGAA 90
Query: 84 DPKSLVNQLNSLKYQYFARSYDFSPPPKVIQ-----SDIQHKTIIQDYKQSHQHKEEVAL 138
D +L N+L+ ++ A+++DF +D ++ + + L
Sbjct: 91 DKGALANRLSDKRWLALAKAFDFGGASGAGTGTAGFADRIAGQYRTQSFEAAIGEVDANL 150
Query: 139 EESKYFRKNIHKINSVD--------QLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+ + + S D + L +F + ++ +L + V
Sbjct: 151 GLALTLDHEMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQV 206
Score = 83.8 bits (205), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 9/208 (4%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
+ + E YF + I + + + L D RLL L +F + ++ VL G
Sbjct: 30 DQSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLNEGA 89
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI-DCVPI 250
A+ D R+ A+A+ F F D + + F I +
Sbjct: 90 ADKGALANRLSDKRWLALAKAFDFGGASGAGTGTAGFADRIAGQYRTQSFEAAIGEVDAN 149
Query: 251 VSDQNYYKLAINSVSS--------FSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
+ + +++S + L L + + D +
Sbjct: 150 LGLALTLDHEMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQVEIY 209
Query: 303 NDPIVSQVKYFFQINFHRDNSSSTKIQQ 330
D F ++ T I+
Sbjct: 210 QDRTARMFGSGSASQFAAEDKRETLIKT 237
Score = 65.3 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 27/216 (12%)
Query: 336 KMLDLYKKNCQILHDDKMQSL--IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+ L + + HD Q + + +G +++ ++L+S L
Sbjct: 16 RFLGRTMERQRDSHDQSQQVQREVAYFAEKIGTVRTPEDLVSD-------------YRLL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
+ AL A+ L + +R VL +D + AN+ D R + L AF+F G
Sbjct: 63 KVALGAFGLGEAINGKALIRKVLNEGAADKGALANRLSDKRWLALAKAFDFGGASGAGTG 122
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINT 513
+ I + + N + +++ E +++
Sbjct: 123 TAGFAD-RIAGQYRTQSFEAAIGEVDANLGLALTLDHEMATLASDDMSEEAKWFS----- 176
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
+L + + + G+ + D ++
Sbjct: 177 ------VLGSTSLRAVFDGAFGLPREFAALDLDRQV 206
Score = 47.6 bits (111), Expect = 0.008, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 56/196 (28%), Gaps = 21/196 (10%)
Query: 235 KIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
+ + ++ + + Y+ I +V + D + D +L K+ +
Sbjct: 20 RTMERQRDSHDQSQQVQREVAYFAEKIGTVRTPEDLVSDYRLLKVALGAFGLGEAINGKA 79
Query: 295 KFLTLMQENDPIVSQVKY--------FFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQ 346
++ E + F +S ++ Y+
Sbjct: 80 LIRKVLNEGAADKGALANRLSDKRWLALAKAFDFGGASGAGTGTAGFADRIAGQYRTQ-- 137
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD-----AYN 401
++ I + LG ++D+ ++ + A+ + +L A+
Sbjct: 138 -----SFEAAIGEVDANLGLALTLDHEMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFG 192
Query: 402 LNMQDLDRDQLRNVLT 417
L ++ L +
Sbjct: 193 L-PREFAALDLDRQVE 207
>gi|56698279|ref|YP_168652.1| flagellar protein, putative [Ruegeria pomeroyi DSS-3]
gi|56680016|gb|AAV96682.1| flagellar protein, putative [Ruegeria pomeroyi DSS-3]
Length = 265
Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats.
Identities = 42/240 (17%), Positives = 91/240 (37%), Gaps = 22/240 (9%)
Query: 484 FNSMEQISTQKRINLEI-NSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVR 542
Q N + N E Y+ I + + E+L++++R+L L + G++
Sbjct: 18 LQRTYDAQAQSFSNSTVRNRESSYFMEKIGQVKTAEDLVSDRRLLQVALGAFGLEDDLNN 77
Query: 543 EDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTC 602
F+ +I + + AN D RY+E +F GE+ + ++D
Sbjct: 78 TYFVRKILEDGTTSSDALANKLSDKRYREFSKAFGLGP-GEIRTTGLVT-----FMEDIV 131
Query: 603 DLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKL 654
+ E+ +D + +ALY + + + + + ++G L K++ L
Sbjct: 132 AKNEAAGFEQAVGAQDETMRIALYAQHELKALADDRSSDNAKWFSLMGIPPLRKMMETAL 191
Query: 655 KLSPYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAAKAMDHQSIDYKKA 707
L + K++ I + + +++ F D + VE A A + + +
Sbjct: 192 GLPSGLGSVDIDKQLEIFQDKLQRLTGSPQVSQFTDPEMVEKVTIAYLARSQINSQFAGS 251
Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/260 (19%), Positives = 105/260 (40%), Gaps = 18/260 (6%)
Query: 1 MIPSHVAPFP----SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFS 56
+I +A + + D Q++ FS + + E Y+ E+I + T ++ + D+RL
Sbjct: 7 LISGGIAGWRFLQRTYDAQAQSFS---NSTVRNRESSYFMEKIGQVKTAEDLVSDRRLLQ 63
Query: 57 YALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSD 116
AL AFGL D + F++KILE + +L N+L+ +Y+ F++++ P
Sbjct: 64 VALGAFGLEDDLNNTYFVRKILEDGTTSSDALANKLSDKRYREFSKAFGLGPGEIRTTGL 123
Query: 117 IQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
+ I ++ ++ V ++ + R ++ + + L DR + S
Sbjct: 124 VTFMEDIVAKNEAAGFEQAVGAQD-ETMRIALYAQHELKALADDRSSDNAKWFSL----- 177
Query: 177 YISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQ-IEK 235
+ +P L+ ++ L P D + + + + S + TD + +EK
Sbjct: 178 -MGIPPLRKMMETALGLPSGLGSVDIDKQLEIFQDKLQ---RLTGSPQVSQFTDPEMVEK 233
Query: 236 IVSNYFNNTIDCVPIVSDQN 255
+ Y +
Sbjct: 234 VTIAYLARSQINSQFAGSSA 253
Score = 84.9 bits (208), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/250 (17%), Positives = 79/250 (31%), Gaps = 19/250 (7%)
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
D + V ES YF + I ++ + + L DRRLL L +F + + F++
Sbjct: 23 DAQAQSFSNSTVRNRESSYFMEKIGQVKTAEDLVSDRRLLQVALGAFGLEDDLNNTYFVR 82
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNT 244
+L G + + D R+R ++ F P + + + K + F
Sbjct: 83 KILEDGTTSSDALANKLSDKRYREFSKAFGLGPGEIRTTGLVTFMEDIVAKNEAAGFEQA 142
Query: 245 IDCVPIVSDQNYYKLA----INSVSSFSD-----FLKDPKLFKMLQLSLFPLNPEITADK 295
+ Y + S + + P L KM++ +L + + D
Sbjct: 143 VGAQDETMRIALYAQHELKALADDRSSDNAKWFSLMGIPPLRKMMETALGLPSGLGSVDI 202
Query: 296 FLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQS 355
L D + F ++K+ Y QI S
Sbjct: 203 DKQLEIFQDKLQRLTGSPQVSQFTD----------PEMVEKVTIAYLARSQINSQFAGSS 252
Query: 356 LIKDYQLPLG 365
++ LG
Sbjct: 253 AAQNALTLLG 262
Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 15/146 (10%)
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+Q+ D ++ +S + +G++K+ ++L+S + L
Sbjct: 18 LQRTYDAQAQSFSNSTVRNRES--SYFMEKIGQVKTAEDLVSDRR-------------LL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
Q AL A+ L + +R +L + D+ ANK D R + + AF
Sbjct: 63 QVALGAFGLEDDLNNTYFVRKILEDGTTSSDALANKLSDKRYREFSKAFGLGPGEIRTTG 122
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDA 479
+ + N + D
Sbjct: 123 LVTFMEDIVAKNEAAGFEQAVGAQDE 148
Score = 39.1 bits (89), Expect = 3.2, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+++ + + + +Y+ I V + D + D +L ++ L F L ++
Sbjct: 18 LQRTYDAQAQSFSNSTVRNRESSYFMEKIGQVKTAEDLVSDRRLLQV-ALGAFGLEDDLN 76
Query: 293 ADKFLTLMQENDPIVSQV 310
F+ + E+ S
Sbjct: 77 NTYFVRKILEDGTTSSDA 94
>gi|163733161|ref|ZP_02140605.1| flagellar protein, putative [Roseobacter litoralis Och 149]
gi|161393696|gb|EDQ18021.1| flagellar protein, putative [Roseobacter litoralis Och 149]
Length = 262
Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats.
Identities = 47/232 (20%), Positives = 98/232 (42%), Gaps = 23/232 (9%)
Query: 497 NLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKD 556
+ ++ +Y+ I+++ + EEL+A++R+ L + G+ F+ ++ + +
Sbjct: 31 SSQLARAAEYFEEKISSVTTAEELVADRRLREVALGAFGLQDDIDNRFFIKKVLEEGTTN 90
Query: 557 PKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEE 616
S AN + D+RYK+ ++F +L K+QD D Y+ E
Sbjct: 91 EDSLANRFSDSRYKDFSAAFGLGPGEQL------KLQDTGFAQDIIAKYRANSFEIATGS 144
Query: 617 KDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPERKK 668
+D ++ +AL+ +R IP + + I+G L V K L L F + ++
Sbjct: 145 QDDSMRVALFAQREIPALATDDTSNDAKWFGIMGQPPLRAVFEKALNLPSSFGQIDIDQQ 204
Query: 669 IRILKKHI-------KINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPN 713
+ + K+ +++ F + V+D + +D A SS +
Sbjct: 205 LVVFKERSRAVFGTDEVSQFAGDEAVQDLVTKYIVRSQ--LDSFNANTSSAS 254
Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/257 (19%), Positives = 95/257 (36%), Gaps = 18/257 (7%)
Query: 3 PSHVAPF-PSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ + + + F+ ++ ++ Y+ E+I ++T +E + D+RL AL A
Sbjct: 8 STGLTGWRFLQRTYDSQFAAFNQSSQLARAAEYFEEKISSVTTAEELVADRRLREVALGA 67
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKV-IQSDIQHK 120
FGL D FIKK+LE ++ SL N+ + +Y+ F+ ++ P ++ +Q +
Sbjct: 68 FGLQDDIDNRFFIKKVLEEGTTNEDSLANRFSDSRYKDFSAAFGLGPGEQLKLQDTGFAQ 127
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYI-- 178
II Y+ + + ++S LF R + S K+
Sbjct: 128 DIIAKYRANSFEIATGSQDDSMRVA-----------LFAQREIPALATDDTSNDAKWFGI 176
Query: 179 -SLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFR--FQPDGSLSKRDKILTDMQIEK 235
P L+ V L P + D + E R F D + K
Sbjct: 177 MGQPPLRAVFEKALNLPSSFGQIDIDQQLVVFKERSRAVFGTDEVSQFAGDEAVQDLVTK 236
Query: 236 IVSNYFNNTIDCVPIVS 252
+ ++ + +
Sbjct: 237 YIVRSQLDSFNANTSSA 253
Score = 78.8 bits (192), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/204 (17%), Positives = 72/204 (35%), Gaps = 9/204 (4%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
++ ++YF + I + + ++L DRRL + L +F + + F+K VL G
Sbjct: 29 NQSSQLARAAEYFEEKISSVTTAEELVADRRLREVALGAFGLQDDIDNRFFIKKVLEEGT 88
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFN-NTIDCVPI 250
N D+R++ + F P L +D I K +N F T
Sbjct: 89 TNEDSLANRFSDSRYKDFSAAFGLGPGEQLKLQDTGFAQDIIAKYRANSFEIATGSQDDS 148
Query: 251 VSDQNYYKLAINSVSS--------FSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
+ + + I ++++ + + P L + + +L + D L+
Sbjct: 149 MRVALFAQREIPALATDDTSNDAKWFGIMGQPPLRAVFEKALNLPSSFGQIDIDQQLVVF 208
Query: 303 NDPIVSQVKYFFQINFHRDNSSST 326
+ + F D +
Sbjct: 209 KERSRAVFGTDEVSQFAGDEAVQD 232
Score = 62.6 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 19/140 (13%)
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+Q+ D ++ + ++ + + + + L++ +
Sbjct: 17 LQRTYDSQFAAFN--QSSQLARAAEYFEEKISSVTTAEELVADRR-------------LR 61
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
+ AL A+ L +R ++ VL ++ DS AN+ D R + AF G
Sbjct: 62 EVALGAFGLQDDIDNRFFIKKVLEEGTTNEDSLANRFSDSRYKDFSAAFGLGP----GEQ 117
Query: 454 PMMQSRLTIRDNVKHYANRK 473
+Q +D + Y
Sbjct: 118 LKLQDTGFAQDIIAKYRANS 137
Score = 44.1 bits (102), Expect = 0.086, Method: Composition-based stats.
Identities = 32/260 (12%), Positives = 82/260 (31%), Gaps = 24/260 (9%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+++ + F + Y++ I+SV++ + + D +L ++ + +
Sbjct: 17 LQRTYDSQFAAFNQSSQLARAAEYFEEKISSVTTAEELVADRRLREVALGAFGLQDDIDN 76
Query: 293 ADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDK 352
+++E + F + ++D S++ + Q++ + ++ +
Sbjct: 77 RFFIKKVLEEGTTNEDSLANRFSDSRYKDFSAAFGLGPGEQLKLQDTGFAQDIIAKYRAN 136
Query: 353 MQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQL 412
+ Q D+ + + A T A + + + + L
Sbjct: 137 SFEIATGSQ---------DDSMRVALFAQREIPALATDDTSNDA-KWFGI----MGQPPL 182
Query: 413 RNVLTSNPSDPDSYANKSKDDRLIKL----NHAFNFNADGSIGPIPMMQSRLTIRDNVKH 468
R V + P S+ D +L+ F + ++D V
Sbjct: 183 RAVFEKALNLPSSFGQIDIDQQLVVFKERSRAVFG------TDEVSQFAGDEAVQDLVTK 236
Query: 469 YANRKRSIHDAENKSFNSME 488
Y R + N S S+
Sbjct: 237 YIVRSQLDSFNANTSSASIA 256
>gi|332561334|ref|ZP_08415649.1| flagellar basal-body rod protein FLGF [Rhodobacter sphaeroides
WS8N]
gi|332274133|gb|EGJ19450.1| flagellar basal-body rod protein FLGF [Rhodobacter sphaeroides
WS8N]
Length = 262
Score = 164 bits (415), Expect = 4e-38, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 82/224 (36%), Gaps = 21/224 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ME+ + ++ EV Y+ I+T+ + E+L+++ R+L L + G+ +
Sbjct: 21 TMERQRDSHDQSQQVQREVAYFAEKIDTVRTPEDLVSDYRLLKVALGAFGLGEAINGKAL 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ D + AN D R+ + +F+F D Y
Sbjct: 81 IRKVLNEGAADKGALANRLSDKRWLALAKAFDF------GGASGAGTGTAGFADRIAGQY 134
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLS 657
+ Q E E D N+ LAL R + + + + +LG + L V L
Sbjct: 135 RTQSFEAAIGEVDANLGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLP 194
Query: 658 PYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAA 694
FA L +++ I + + F K E +
Sbjct: 195 REFAALDLDRQVEIYQDRTARMFGSGSASQFAAEDKRETLIKTF 238
Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 13/176 (7%)
Query: 24 KDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLS 83
+ V E Y+ E+I + T ++ + D RL AL AFGL + + + I+K+L +
Sbjct: 31 QSQQVQREVAYFAEKIDTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLNEGAA 90
Query: 84 DPKSLVNQLNSLKYQYFARSYDFSPPPKVIQ-----SDIQHKTIIQDYKQSHQHKEEVAL 138
D +L N+L+ ++ A+++DF +D ++ + + L
Sbjct: 91 DKGALANRLSDKRWLALAKAFDFGGASGAGTGTAGFADRIAGQYRTQSFEAAIGEVDANL 150
Query: 139 EESKYFRKNIHKINSVD--------QLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+ + + + S D + L +F + ++ +L + V
Sbjct: 151 GLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQV 206
Score = 84.1 bits (206), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 9/208 (4%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
+ + E YF + I + + + L D RLL L +F + ++ VL G
Sbjct: 30 DQSQQVQREVAYFAEKIDTVRTPEDLVSDYRLLKVALGAFGLGEAINGKALIRKVLNEGA 89
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI-DCVPI 250
A+ D R+ A+A+ F F D + + F I +
Sbjct: 90 ADKGALANRLSDKRWLALAKAFDFGGASGAGTGTAGFADRIAGQYRTQSFEAAIGEVDAN 149
Query: 251 VSDQNYYKLAINSVSS--------FSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
+ + +++S + L L + + D +
Sbjct: 150 LGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFGLPREFAALDLDRQVEIY 209
Query: 303 NDPIVSQVKYFFQINFHRDNSSSTKIQQ 330
D F ++ T I+
Sbjct: 210 QDRTARMFGSGSASQFAAEDKRETLIKT 237
Score = 62.6 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/216 (13%), Positives = 69/216 (31%), Gaps = 27/216 (12%)
Query: 336 KMLDLYKKNCQILHDDKMQSL--IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+ L + + HD Q + + + +++ ++L+S L
Sbjct: 16 RFLGRTMERQRDSHDQSQQVQREVAYFAEKIDTVRTPEDLVSD-------------YRLL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
+ AL A+ L + +R VL +D + AN+ D R + L AF+F G
Sbjct: 63 KVALGAFGLGEAINGKALIRKVLNEGAADKGALANRLSDKRWLALAKAFDFGGASGAGTG 122
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINT 513
+ I + + N + +++ E +++
Sbjct: 123 TAGFAD-RIAGQYRTQSFEAAIGEVDANLGLALTLDREMATLASDDMSEEAKWFS----- 176
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEI 549
+L + + + G+ + D ++
Sbjct: 177 ------VLGSTSLRAVFDGAFGLPREFAALDLDRQV 206
Score = 46.4 bits (108), Expect = 0.020, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 56/196 (28%), Gaps = 21/196 (10%)
Query: 235 KIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
+ + ++ + + Y+ I++V + D + D +L K+ +
Sbjct: 20 RTMERQRDSHDQSQQVQREVAYFAEKIDTVRTPEDLVSDYRLLKVALGAFGLGEAINGKA 79
Query: 295 KFLTLMQENDPIVSQVKY--------FFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQ 346
++ E + F +S ++ Y+
Sbjct: 80 LIRKVLNEGAADKGALANRLSDKRWLALAKAFDFGGASGAGTGTAGFADRIAGQYRTQ-- 137
Query: 347 ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD-----AYN 401
++ I + LG ++D ++ + A+ + +L A+
Sbjct: 138 -----SFEAAIGEVDANLGLALTLDREMATLASDDMSEEAKWFSVLGSTSLRAVFDGAFG 192
Query: 402 LNMQDLDRDQLRNVLT 417
L ++ L +
Sbjct: 193 L-PREFAALDLDRQVE 207
>gi|126738585|ref|ZP_01754290.1| flagellar protein, putative [Roseobacter sp. SK209-2-6]
gi|126720384|gb|EBA17090.1| flagellar protein, putative [Roseobacter sp. SK209-2-6]
Length = 268
Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 94/238 (39%), Gaps = 26/238 (10%)
Query: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540
N ++ ++ I E DY+ NI + + E+L+ ++R+L+ L + G++ Q
Sbjct: 16 NFLQSTYDRQFEVFSSGAAIERESDYFLENIGKVETAEDLIKDRRLLSVALGAFGLEDQI 75
Query: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600
+ + ++ + + A D+R+ +F F + ++D +
Sbjct: 76 DMKALVQKVLEEGSSADDALATRLGDDRWVSFTDAFGFGPGESRKTGDLEAMKDVVFTNK 135
Query: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTI------------PNI-RNHYEILGDSKLF 647
T Q E ++ + +ALY +R + P+I Y I+G +L
Sbjct: 136 T------QSFETAVGNQEQTLRVALYAERELVPLVAEGEDGETPSINTQWYNIIGQPQLH 189
Query: 648 KVVSKKLKLSPYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAAKAMD 698
++ L L + ++++I ++ +++F D +K+ + + A
Sbjct: 190 SMMQTALGLPDSIGQVDVDQQVKIFREASERFFGSDDLSEFSDPEKMSNLISTYLARS 247
Score = 134 bits (337), Expect = 6e-29, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 80/237 (33%), Gaps = 32/237 (13%)
Query: 19 FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKIL 78
F S + E Y+ E I + T ++ IKD+RL S AL AFGL D + ++K+L
Sbjct: 26 FEVFSSGAAIERESDYFLENIGKVETAEDLIKDRRLLSVALGAFGLEDQIDMKALVQKVL 85
Query: 79 ESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVAL 138
E S +L +L ++ F ++ F P D++ + ++ + V
Sbjct: 86 EEGSSADDALATRLGDDRWVSFTDAFGFGPGESRKTGDLEAMKDVVFTNKTQSFETAVGN 145
Query: 139 EE-----SKYFRKNIHKI-------------NSVDQLFKDRRLLDYVLQSFSITPKYISL 180
+E + Y + + + + +L + + + +
Sbjct: 146 QEQTLRVALYAERELVPLVAEGEDGETPSINTQWYNIIGQPQLHSMMQTALGLPDSIGQV 205
Query: 181 PFLKDVLT--------------LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSK 223
+ V ++P+K R+ F GS +
Sbjct: 206 DVDQQVKIFREASERFFGSDDLSEFSDPEKMSNLISTYLARSEIAAFNASISGSSAA 262
Score = 84.1 bits (206), Expect = 8e-14, Method: Composition-based stats.
Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 24/236 (10%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
ES YF +NI K+ + + L KDRRLL L +F + + ++ VL G
Sbjct: 30 SSGAAIERESDYFLENIGKVETAEDLIKDRRLLSVALGAFGLEDQIDMKALVQKVLEEGS 89
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRD-KILTDMQIEKIVSNYFNNTIDCVPI 250
+ D+R+ + + F F P S D + + D+ ++ +
Sbjct: 90 SADDALATRLGDDRWVSFTDAFGFGPGESRKTGDLEAMKDVVFTNKTQSFETAVGNQEQT 149
Query: 251 VSDQNYYKLAI------------NSV-SSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
+ Y + + S+ + + + + P+L M+Q +L + D
Sbjct: 150 LRVALYAERELVPLVAEGEDGETPSINTQWYNIIGQPQLHSMMQTALGLPDSIGQVDV-- 207
Query: 298 TLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKM 353
D V + + F D ++ ++ ++ Y +I +
Sbjct: 208 ------DQQVKIFREASERFFGSD--DLSEFSDPEKMSNLISTYLARSEIAAFNAS 255
Score = 66.0 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/250 (16%), Positives = 91/250 (36%), Gaps = 34/250 (13%)
Query: 351 DKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRD 410
++ + +GK+++ ++L+ + L AL A+ L Q +
Sbjct: 33 AAIERESDYFLENIGKVETAEDLIKDRR-------------LLSVALGAFGLEDQIDMKA 79
Query: 411 QLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYA 470
++ VL S D+ A + DDR + AF F S + + + N
Sbjct: 80 LVQKVLEEGSSADDALATRLGDDRWVSFTDAFGFGPGESRKTGDLEAMKDVVFTN--KTQ 137
Query: 471 NRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL 530
+ + ++ + E ++ ++ + + D T +IN + ++ ++ + +
Sbjct: 138 SFETAVGNQEQTLRVALY---AERELVPLVAEGEDGETPSIN--TQWYNIIGQPQLHSMM 192
Query: 531 LESKGIDSQKVREDFLCEI----------FKSD----LKDPKSFANTYKDNRYKEIISSF 576
+ G+ + D ++ F SD DP+ +N + I++F
Sbjct: 193 QTALGLPDSIGQVDVDQQVKIFREASERFFGSDDLSEFSDPEKMSNLISTYLARSEIAAF 252
Query: 577 NFDIHGELSH 586
N I G +
Sbjct: 253 NASISGSSAA 262
>gi|310816824|ref|YP_003964788.1| flagellar protein, putative [Ketogulonicigenium vulgare Y25]
gi|308755559|gb|ADO43488.1| flagellar protein, putative [Ketogulonicigenium vulgare Y25]
Length = 262
Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 24/237 (10%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
++E+ + + E+ Y+ I I + E+LLA++R+L+ L + G+ + F
Sbjct: 21 TLERQTAVFAASGEVAMNSTYFRDTIAKIQTPEDLLADRRLLSVALGAFGLQDDLNAKAF 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ + D +FAN D RY + ++F F G D D Y
Sbjct: 81 IKRVLVEGTDDKTAFANKLSDKRYAALANAFGFGNEGGARTA------DAGFADTILARY 134
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNI--------RNHYEILGDSKLFKVVSKKLKLS 657
+ E E+D + LAL I ++ + ++GDS L V L
Sbjct: 135 TAESFELAVGEQDNTMRLALNLSGGISDVMQHATSDSAQWFAMMGDSPLRSVFETALGFP 194
Query: 658 PYFAVLPERKKIRILKKHIK-------INDFKDSKKVEDFLYAA---KAMDHQSIDY 704
F + ++ + K DF D E + M++ S++
Sbjct: 195 TGFGQIDIDQQKQQFMARAKATFGVESFADFTDPAVQEKLIRLFMLRSEMNNSSLNS 251
Score = 120 bits (300), Expect = 1e-24, Method: Composition-based stats.
Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 13/187 (6%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ + + + + V+ Y+R+ I I T ++ + D+RL S AL A
Sbjct: 9 LSGYTGWRFLSQTLERQTAVFAASGEVAMNSTYFRDTIAKIQTPEDLLADRRLLSVALGA 68
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKT 121
FGL D +A+ FIK++L D + N+L+ +Y A ++ F +D
Sbjct: 69 FGLQDDLNAKAFIKRVLVEGTDDKTAFANKLSDKRYAALANAFGFGNEGGARTADAGFAD 128
Query: 122 IIQDYKQSHQHKEEVALEE-------------SKYFRKNIHKINSVDQLFKDRRLLDYVL 168
I + + V ++ S + + D L
Sbjct: 129 TILARYTAESFELAVGEQDNTMRLALNLSGGISDVMQHATSDSAQWFAMMGDSPLRSVFE 188
Query: 169 QSFSITP 175
+
Sbjct: 189 TALGFPT 195
Score = 98.8 bits (244), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 9/170 (5%)
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
+ + + S YFR I KI + + L DRRLL L +F + + F+K
Sbjct: 23 ERQTAVFAASGEVAMNSTYFRDTIAKIQTPEDLLADRRLLSVALGAFGLQDDLNAKAFIK 82
Query: 185 DVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNT 244
VL G + + + D R+ A+A F F +G D D + + + F
Sbjct: 83 RVLVEGTDDKTAFANKLSDKRYAALANAFGFGNEGGARTADAGFADTILARYTAESFELA 142
Query: 245 IDCVP---------IVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF 285
+ + + A + + + + D L + + +L
Sbjct: 143 VGEQDNTMRLALNLSGGISDVMQHATSDSAQWFAMMGDSPLRSVFETALG 192
Score = 70.3 bits (170), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 13/112 (11%)
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416
++ + KI++ ++LL+ + L AL A+ L + ++ VL
Sbjct: 39 STYFRDTIAKIQTPEDLLADRR-------------LLSVALGAFGLQDDLNAKAFIKRVL 85
Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKH 468
D ++ANK D R L +AF F +G + +
Sbjct: 86 VEGTDDKTAFANKLSDKRYAALANAFGFGNEGGARTADAGFADTILARYTAE 137
Score = 44.9 bits (104), Expect = 0.053, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 36/135 (26%), Gaps = 13/135 (9%)
Query: 245 IDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNP------------EIT 292
+ + Y++ I + + D L D +L + + + E T
Sbjct: 30 AASGEVAMNSTYFRDTIAKIQTPEDLLADRRLLSVALGAFGLQDDLNAKAFIKRVLVEGT 89
Query: 293 ADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDK 352
DK + +D + + F + + + I + D
Sbjct: 90 DDKTAFANKLSDKRYAALANAFGFG-NEGGARTADAGFADTILARYTAESFELAVGEQDN 148
Query: 353 MQSLIKDYQLPLGKI 367
L + + +
Sbjct: 149 TMRLALNLSGGISDV 163
>gi|294679038|ref|YP_003579653.1| flagellar protein [Rhodobacter capsulatus SB 1003]
gi|294477858|gb|ADE87246.1| flagellar protein, putative [Rhodobacter capsulatus SB 1003]
Length = 275
Score = 163 bits (411), Expect = 1e-37, Method: Composition-based stats.
Identities = 41/200 (20%), Positives = 85/200 (42%), Gaps = 13/200 (6%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ME+ + +I + DY+ I +I + E+L++++R+L L + G+DS + F
Sbjct: 21 TMEKQKAAFAASADIKRDEDYFRAKIGSITTAEDLVSDRRLLKVALGAFGLDSDIDNKFF 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ ++ D AN D Y ++ ++F F + Q + D+ Y
Sbjct: 81 IRKVLETAADDKTGLANKLADKTYLKLATAFGFG-----DTPDAPRTQTSGFADEILSKY 135
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNI--------RNHYEILGDSKLFKVVSKKLKLS 657
+ + E E D + LA+ +R + + Y ++G L V+ L L
Sbjct: 136 ETRQFETAVGESDESYRLAMAAQRDLGELVASSSTNNAKWYSVIGSKSLSTVMRTALGLP 195
Query: 658 PYFAVLPERKKIRILKKHIK 677
+ L +++ I + K
Sbjct: 196 ESVSSLDVDQQLVIYTQKAK 215
Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 18/200 (9%)
Query: 3 PSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAF 62
+ K + + + +E Y+R +I I+T ++ + D+RL AL AF
Sbjct: 10 SGYAGWKLLNRTMEKQKAAFAASADIKRDEDYFRAKIGSITTAEDLVSDRRLLKVALGAF 69
Query: 63 GLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKV--IQSDIQHK 120
GL + FI+K+LE+ D L N+L Y A ++ F P Q+
Sbjct: 70 GLDSDIDNKFFIRKVLETAADDKTGLANKLADKTYLKLATAFGFGDTPDAPRTQTSGFAD 129
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKI--------------NSVDQLFKDRRLLDY 166
I+ Y+ E E + +R + + + L
Sbjct: 130 EILSKYETRQF--ETAVGESDESYRLAMAAQRDLGELVASSSTNNAKWYSVIGSKSLSTV 187
Query: 167 VLQSFSITPKYISLPFLKDV 186
+ + + SL + +
Sbjct: 188 MRTALGLPESVSSLDVDQQL 207
Score = 85.7 bits (210), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 16/190 (8%)
Query: 127 KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+++ + YFR I I + + L DRRLL L +F + + F++ V
Sbjct: 25 QKAAFAASADIKRDEDYFRAKIGSITTAEDLVSDRRLLKVALGAFGLDSDIDNKFFIRKV 84
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTID 246
L + + D + +A F F G + T ++I+S Y +
Sbjct: 85 LETAADDKTGLANKLADKTYLKLATAFGF---GDTPDAPRTQTSGFADEILSKYETRQFE 141
Query: 247 CVPIVSDQNY-------------YKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITA 293
SD++Y + + + + + L +++ +L +
Sbjct: 142 TAVGESDESYRLAMAAQRDLGELVASSSTNNAKWYSVIGSKSLSTVMRTALGLPESVSSL 201
Query: 294 DKFLTLMQEN 303
D L+
Sbjct: 202 DVDQQLVIYT 211
Score = 65.7 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 16/166 (9%)
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
+ K+ ++ ++ +G I + ++L+S + L+ AL
Sbjct: 21 TMEKQKAAFAASADIKRDEDYFRAKIGSITTAEDLVSDRR-------------LLKVALG 67
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
A+ L+ ++ +R VL + D ANK D +KL AF F G P Q+
Sbjct: 68 AFGLDSDIDNKFFIRKVLETAADDKTGLANKLADKTYLKLATAFGF---GDTPDAPRTQT 124
Query: 459 RLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEV 504
+ + Y R+ E+ + + + L +S
Sbjct: 125 SGFADEILSKYETRQFETAVGESDESYRLAMAAQRDLGELVASSST 170
Score = 51.0 bits (120), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/188 (14%), Positives = 63/188 (33%), Gaps = 17/188 (9%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ + + I D++Y++ I S+++ D + D +L K+ L F L+ +I
Sbjct: 18 LNRTMEKQKAAFAASADIKRDEDYFRAKIGSITTAEDLVSDRRLLKV-ALGAFGLDSDID 76
Query: 293 ADKFLTLMQEND-----------PIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLY 341
F+ + E + +K F D + + Q ++L Y
Sbjct: 77 NKFFIRKVLETAADDKTGLANKLADKTYLKLATAFGFG-DTPDAPRTQTSGFADEILSKY 135
Query: 342 KKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD-AY 400
+ + + + Y+L + + + L++ + +L + A
Sbjct: 136 ETRQ---FETAVGESDESYRLAMAAQRDLGELVASSSTNNAKWYSVIGSKSLSTVMRTAL 192
Query: 401 NLNMQDLD 408
L
Sbjct: 193 GLPESVSS 200
>gi|126734100|ref|ZP_01749847.1| flagellar protein, putative [Roseobacter sp. CCS2]
gi|126716966|gb|EBA13830.1| flagellar protein, putative [Roseobacter sp. CCS2]
Length = 268
Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats.
Identities = 39/224 (17%), Positives = 84/224 (37%), Gaps = 21/224 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+ E T + I DY+ NI + + +L+ ++++L+ L + G+D F
Sbjct: 21 TAEAQQTAFSNSAPIQRATDYFRENIGDVRTASDLVNDRQLLSIALGAFGLDDDINNRAF 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ +I + + AN DNRY + ++F F I + + D +
Sbjct: 81 IQKILEDGTVAQDALANRLADNRYADFSAAFGFG------DSPIPRTVLGRFPTEIIDRF 134
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLS 657
+ Q + E++ ++ LA + +I + I+G++ L +V L L
Sbjct: 135 EAQQFARAIGEQNNDMRLASNVNSGVADIVAGNATNTGRWFSIMGNAPLREVFQTALGLP 194
Query: 658 PYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAA 694
A + K+ + ++ + K+ E +
Sbjct: 195 NSLAGIDIDKQREVFQERALSVFGTDDVAQIATPKQEEKLIRLF 238
Score = 122 bits (305), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/267 (19%), Positives = 93/267 (34%), Gaps = 19/267 (7%)
Query: 5 HVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGL 64
++ + + S + Y+RE I + T + + D++L S AL AFGL
Sbjct: 12 YIGWRFLERTAEAQQTAFSNSAPIQRATDYFRENIGDVRTASDLVNDRQLLSIALGAFGL 71
Query: 65 SDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQ 124
D + FI+KILE +L N+L +Y F+ ++ F P + T I
Sbjct: 72 DDDINNRAFIQKILEDGTVAQDALANRLADNRYADFSAAFGFGDSPIPRTVLGRFPTEII 131
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFK--DRRLLDYVLQSFSITPKYISL-- 180
D ++ Q F + I + N+ +L + + D V + + T ++ S+
Sbjct: 132 DRFEAQQ------------FARAIGEQNNDMRLASNVNSGVADIVAGNATNTGRWFSIMG 179
Query: 181 -PFLKDVLTLGLANPKKYFIESRDNRFRAMAE-NFR-FQPDGSLSKRDKILTDMQIEKIV 237
L++V L P D + E F D + I +
Sbjct: 180 NAPLREVFQTALGLPNSLAGIDIDKQREVFQERALSVFGTDDVAQIATPKQEEKLIRLFL 239
Query: 238 SNYFNNTIDCVPIVSDQNYYKLAINSV 264
N + + + +
Sbjct: 240 IRSEANDLAASSAGTTALTLLQSAPRL 266
Score = 64.1 bits (154), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 14/148 (9%)
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
+ + +Q ++ +G +++ +L++ + L AL
Sbjct: 21 TAEAQQTAFSNSAPIQRATDYFRENIGDVRTASDLVNDRQ-------------LLSIALG 67
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
A+ L+ +R ++ +L D+ AN+ D+R + AF F D I + +
Sbjct: 68 AFGLDDDINNRAFIQKILEDGTVAQDALANRLADNRYADFSAAFGFG-DSPIPRTVLGRF 126
Query: 459 RLTIRDNVKHYANRKRSIHDAENKSFNS 486
I D + + + S
Sbjct: 127 PTEIIDRFEAQQFARAIGEQNNDMRLAS 154
>gi|170748128|ref|YP_001754388.1| hypothetical protein Mrad2831_1710 [Methylobacterium radiotolerans
JCM 2831]
gi|170654650|gb|ACB23705.1| protein of unknown function DUF1217 [Methylobacterium radiotolerans
JCM 2831]
Length = 472
Score = 160 bits (404), Expect = 9e-37, Method: Composition-based stats.
Identities = 82/495 (16%), Positives = 167/495 (33%), Gaps = 58/495 (11%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
I + ++ N + +D Y+ I V+S DF+ + +LF + F L
Sbjct: 11 ISRDIAKSLKNKAAERAVANDTKYFSEHIGDVTSVDDFIGNARLFNF-AMRAFGLEDMAY 69
Query: 293 ADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDK 352
A F+ + +P + QD++ + + + K
Sbjct: 70 AKSFMKKVLLGEP-------------DANGHVLVDRLQDTRYRDFANAFNFRSYGDDPSK 116
Query: 353 MQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQL 412
++ + + + + + + + FA A +++ + +L
Sbjct: 117 PKTFDNPEVEAMLESVGANKTVDQQKLAYDNQTGRDTQYISDFAAYATSVDD-IVSDPKL 175
Query: 413 RNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANR 472
+++ + P A+++ D A F+A P I + +
Sbjct: 176 SSIVRATVGLP--PASETADPATQAAEIASKFDAATFQNP---AAVDAFIDEYLAMRKEG 230
Query: 473 KRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLE 532
+++I D T + E Y+ +T+ + ++++A+
Sbjct: 231 RKAIIDPY------FRPSGTYANSDAETEKLAAYFRAKASTLQTAQDIVAD--------- 275
Query: 533 SKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKV 592
L +I S L P N KD + + + + N D+ + + +
Sbjct: 276 -----------TTLTDIVWSTLGLPA--TNASKDPKAQAALIAKNLDVASLRDPRTLSQF 322
Query: 593 QDNF------HIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKL 646
D F T D Y Q +E +D LALYFKR I++ Y IL D L
Sbjct: 323 IDRFKDARVAARSATVDAYVRQTLEDDAGAQDQGTRLALYFKRQAGTIKSIYGILADKAL 382
Query: 647 FKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM----DHQSI 702
+VV L A ++ + + + I F+D +K++ F+ M + +
Sbjct: 383 AEVVRTTLGFPAEMARSNLDSQVAQISRKLDITTFQDPEKLDRFIRRFTIMWDAKNDTAA 442
Query: 703 DYKKALFSSPNQNKD 717
+LF + D
Sbjct: 443 QPALSLFGGADGGFD 457
Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats.
Identities = 68/396 (17%), Positives = 149/396 (37%), Gaps = 27/396 (6%)
Query: 1 MIPSHVAP-FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYAL 59
M +++ S+DI +K + + V+ + +Y+ E I ++++D+FI + RLF++A+
Sbjct: 1 MSSTYMDYTLISRDI-AKSLKNKAAERAVANDTKYFSEHIGDVTSVDDFIGNARLFNFAM 59
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPK-SLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQ 118
+AFGL DM++A+ F+KK+L + LV++L +Y+ FA +++F
Sbjct: 60 RAFGLEDMAYAKSFMKKVLLGEPDANGHVLVDRLQDTRYRDFANAFNFRSYGDDPSKPKT 119
Query: 119 HKTIIQDYKQSHQHKEEVA-----------LEESKYFRKNIHKINSVDQLFKDRRLLDYV 167
+ + +++Y SVD + D +L V
Sbjct: 120 FDNPEVEAMLESVGANKTVDQQKLAYDNQTGRDTQYISDFAAYATSVDDIVSDPKLSSIV 179
Query: 168 LQSFSITPKYISLPFLKDVLTLGLA-NPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDK 226
+ + P + + + + + + F E + +G + D
Sbjct: 180 RATVGLPPASETADPATQAAEIASKFDAATFQNPAAVDAFID--EYLAMRKEGRKAIIDP 237
Query: 227 ILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFP 286
+ Y N+ + + Y++ +++ + D + D L ++ +L
Sbjct: 238 YF------RPSGTYANSDAETEKLA---AYFRAKASTLQTAQDIVADTTLTDIVWSTLGL 288
Query: 287 LNPEITAD-KFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNC 345
+ D K + + V+ ++ ++ D ++ S
Sbjct: 289 PATNASKDPKAQAALIAKNLDVASLRDPRTLSQFIDRFKDARVAARSATVDAYVRQTLED 348
Query: 346 QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLE 381
D+ L ++ G IKSI +L+ K E
Sbjct: 349 DAGAQDQGTRLALYFKRQAGTIKSIYGILADKALAE 384
Score = 73.0 bits (177), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/362 (14%), Positives = 115/362 (31%), Gaps = 56/362 (15%)
Query: 20 STVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILE 79
++ D + +Y + + +++D+ + D +L S GL
Sbjct: 141 QKLAYDNQTGRDTQYISDFAAYATSVDDIVSDPKLSSIVRATVGLPP------------A 188
Query: 80 SDLSDPKS----LVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEE 135
S+ +DP + + ++ ++ +Q A F ++ + + I ++ S +
Sbjct: 189 SETADPATQAAEIASKFDAATFQNPAAVDAFIDEYLAMRKEGRKAIIDPYFRPSGTYANS 248
Query: 136 VALEE--SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLAN 193
A E + YFR + + + D L D V + + S L
Sbjct: 249 DAETEKLAAYFRAKASTLQTAQDIVADTTLTDIVWSTLGLPATNASKDPKAQA---ALIA 305
Query: 194 PKKYFIESRDNR-FRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS 252
RD R + F+ D ++ R V Y T++
Sbjct: 306 KNLDVASLRDPRTLSQFIDRFK---DARVAARSA---------TVDAYVRQTLEDDAGAQ 353
Query: 253 DQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIV 307
DQ Y+K ++ S L D L ++++ +L ++ D V
Sbjct: 354 DQGTRLALYFKRQAGTIKSIYGILADKALAEVVRTTLGFPAEMARSNL--------DSQV 405
Query: 308 SQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKI 367
+Q+ I T Q ++ + + + +D Q + + G
Sbjct: 406 AQISRKLDI---------TTFQDPEKLDRFIRRFTIMWDAKNDTAAQPALSLFGGADGGF 456
Query: 368 KS 369
+
Sbjct: 457 DT 458
>gi|260432290|ref|ZP_05786261.1| putative flagellar protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260416118|gb|EEX09377.1| putative flagellar protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 265
Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats.
Identities = 39/225 (17%), Positives = 86/225 (38%), Gaps = 21/225 (9%)
Query: 492 TQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFK 551
+ E E Y+ NI + S E+L++++R+L L++ G+++ F+ ++
Sbjct: 27 QTFSASAENERETQYFLENIRNVRSAEDLVSDRRLLRVALDAFGLEADLDNRYFIQKVLS 86
Query: 552 SDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIE 611
K + AN D+RY+E +F GE+ + + + E
Sbjct: 87 DGTKAEDALANRLADSRYREFSEAFGLGP-GEVRKTALITDMEKIAQKGIVARF-----E 140
Query: 612 KKEEEKDPNIALALYFKRTIPNIR--------NHYEILGDSKLFKVVSKKLKLSPYFAVL 663
E D + +ALY + ++ + Y+++ L ++ L L F L
Sbjct: 141 SAVGESDETMRIALYAQHSLRELAEQTGSETKKWYDLMSLPPLRSMMETALGLPSSFGQL 200
Query: 664 PERKKIRILKKHI-------KINDFKDSKKVEDFLYAAKAMDHQS 701
K++ I + + ++ F ++ ++ A +
Sbjct: 201 DIDKQLEIFRDKLAGLTGSEDLSQFVSTQAIQSLTDTYLARSQIA 245
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 92/244 (37%), Gaps = 17/244 (6%)
Query: 11 SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHA 70
+ D Q + FS +++ E +Y+ E I+++ + ++ + D+RL AL AFGL
Sbjct: 21 TYDAQLQTFSASAEN---ERETQYFLENIRNVRSAEDLVSDRRLLRVALDAFGLEADLDN 77
Query: 71 EKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSH 130
FI+K+L +L N+L +Y+ F+ ++ P + I I K
Sbjct: 78 RYFIQKVLSDGTKAEDALANRLADSRYREFSEAFGLGPGEVRKTALITDMEKIAQ-KGIV 136
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYI---SLPFLKDVL 187
E E + R ++ +S L + Q+ S T K+ SLP L+ ++
Sbjct: 137 ARFESAVGESDETMRIALYAQHS---------LRELAEQTGSETKKWYDLMSLPPLRSMM 187
Query: 188 TLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDC 247
L P + D + + GS + T + + I
Sbjct: 188 ETALGLPSSFGQLDIDKQLEIFRDKLA-GLTGSEDLSQFVSTQAIQSLTDTYLARSQIAQ 246
Query: 248 VPIV 251
+
Sbjct: 247 IQSA 250
Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/292 (12%), Positives = 96/292 (32%), Gaps = 51/292 (17%)
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+Q+ D + +++ ++ + + + ++S ++L+S + L
Sbjct: 18 LQRTYDAQLQTFSASAENERET--QYFLENIRNVRSAEDLVSDRR-------------LL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPI 453
+ ALDA+ L +R ++ VL+ D+ AN+ D R + + AF
Sbjct: 63 RVALDAFGLEADLDNRYFIQKVLSDGTKAEDALANRLADSRYREFSEAFGLGPGEVRKTA 122
Query: 454 PMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINT 513
+ + + A + ++ +++ ++ + + + + SE +
Sbjct: 123 LITDMEKIAQKGIV--ARFESAVGESDETMRIALYAQHSLRELAEQTGSETKKWY----- 175
Query: 514 IHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEII 573
+L++ + + + + G+ P SF D +
Sbjct: 176 -----DLMSLPPLRSMMETALGL--------------------PSSFGQLDIDKQL---- 206
Query: 574 SSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALAL 625
F + G + + + I D Y + + + AL
Sbjct: 207 EIFRDKLAGLTGSEDLSQFVSTQAIQSLTDTYLARSQIAQIQSAVSPAQTAL 258
>gi|89069825|ref|ZP_01157160.1| flagellar protein, putative [Oceanicola granulosus HTCC2516]
gi|89044626|gb|EAR50742.1| flagellar protein, putative [Oceanicola granulosus HTCC2516]
Length = 264
Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 20/222 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
++E + I + + + I S ++LL +++ + +L + G+D F
Sbjct: 21 TLEVQQAAYAASAPIERATESFREKVPQITSIDDLLDDRQAMQVVLGAFGLDDDIDSAAF 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ + P SFA D RY ++ + F G GK Q D Y
Sbjct: 81 VRKVLEEGTVAPDSFAIRLSDKRYLQLADALGFGDLG-----GAGKTQWLGFADVIVARY 135
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNI--------RNHYEILGDSKLFKVVSKKLKLS 657
+ + E+ E+D + +AL R + + + I+G++ L V L S
Sbjct: 136 EARQFERAVGEQDEQLRIALSVSRGVEEVLQGQDGRTARWFAIMGNAPLRSVFETALGFS 195
Query: 658 PYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLY 692
F + +++ ++ DF++ E +
Sbjct: 196 SSFGSIDLDQQLEQFQERTESVLGSGDPADFENEAVQEKLIR 237
Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 85/254 (33%), Gaps = 23/254 (9%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ + + + + +RE++ I++ID+ + D++ L A
Sbjct: 9 LAGYAGYRFLARTLEVQQAAYAASAPIERATESFREKVPQITSIDDLLDDRQAMQVVLGA 68
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDI--QH 119
FGL D + F++K+LE P S +L+ +Y A + F ++
Sbjct: 69 FGLDDDIDSAAFVRKVLEEGTVAPDSFAIRLSDKRYLQLADALGFGDLGGAGKTQWLGFA 128
Query: 120 KTIIQDY----KQSHQHKEEVALEESKYFRKNIHKINS--------VDQLFKDRRLLDYV 167
I+ Y + +++ L + + + ++ + + L
Sbjct: 129 DVIVARYEARQFERAVGEQDEQLRIALSVSRGVEEVLQGQDGRTARWFAIMGNAPLRSVF 188
Query: 168 LQSFSITPKYISLPFLKDVLT--------LGLANPKKYFIESRDNRFRAMAEN-FRFQPD 218
+ + + S+ + + LG +P + E+ + +
Sbjct: 189 ETALGFSSSFGSIDLDQQLEQFQERTESVLGSGDPADFENEAVQEKLIRLYMVRTEMAAS 248
Query: 219 GSLSKRDKILTDMQ 232
SLS LT +Q
Sbjct: 249 QSLSGAAAALTLLQ 262
Score = 87.2 bits (214), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/245 (15%), Positives = 82/245 (33%), Gaps = 20/245 (8%)
Query: 127 KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+Q+ ++ FR+ + +I S+D L DR+ + VL +F + S F++ V
Sbjct: 25 QQAAYAASAPIERATESFREKVPQITSIDDLLDDRQAMQVVLGAFGLDDDIDSAAFVRKV 84
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKR-----DKILTDMQIEKIVSNYF 241
L G P + I D R+ +A+ F G K ++ +
Sbjct: 85 LEEGTVAPDSFAIRLSDKRYLQLADALGFGDLGGAGKTQWLGFADVIVARYEARQFERAV 144
Query: 242 NNTIDCVPIVSD-----QNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKF 296
+ + I + + + + + + L + + +L + + D
Sbjct: 145 GEQDEQLRIALSVSRGVEEVLQGQDGRTARWFAIMGNAPLRSVFETALGFSSSFGSIDLD 204
Query: 297 LTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSL 356
L Q + S + +F + +Q +K++ LY ++ +
Sbjct: 205 QQLEQFQERTESVLGSGDPADFENE-----AVQ-----EKLIRLYMVRTEMAASQSLSGA 254
Query: 357 IKDYQ 361
Sbjct: 255 AAALT 259
Score = 71.4 bits (173), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
L + ++ + ++ + +I SID+LL + +Q L
Sbjct: 21 TLEVQQAAYAASAPIERATESFREKVPQITSIDDLLDDRQ-------------AMQVVLG 67
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIG 451
A+ L+ +R VL PDS+A + D R ++L A F G G
Sbjct: 68 AFGLDDDIDSAAFVRKVLEEGTVAPDSFAIRLSDKRYLQLADALGFGDLGGAG 120
>gi|86139476|ref|ZP_01058045.1| flagellar protein, putative [Roseobacter sp. MED193]
gi|85823979|gb|EAQ44185.1| flagellar protein, putative [Roseobacter sp. MED193]
Length = 268
Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats.
Identities = 38/222 (17%), Positives = 88/222 (39%), Gaps = 26/222 (11%)
Query: 500 INSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKS 559
+ + +Y+ NI + + E+L+++ R+L L + G+ S+ + + ++ + + +
Sbjct: 35 LERDNEYFMENIGNVKTAEDLVSDYRLLEVALNAFGLASEIDSKAMIQKVLEDGSEADDA 94
Query: 560 FANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDP 619
AN D+R+ + +F F K+Q + D Q E +D
Sbjct: 95 LANKLGDDRWIDFTDAFKFGPGLAPVTGLTYKMQ------EIADKNVVQSFEDAVGAQDV 148
Query: 620 NIALALYFKRTIPNIRN-------------HYEILGDSKLFKVVSKKLKLSPYFAVLPER 666
++ +ALY +R + ++ I+G +L ++ L L A+L
Sbjct: 149 SMQIALYAERELVDLVTFDDEGEELSITGQWLNIIGQPQLQSMMQTTLGLPSDLALLDID 208
Query: 667 KKIRILKKHI-------KINDFKDSKKVEDFLYAAKAMDHQS 701
+++ IL+ + F D ++++ + A
Sbjct: 209 QQVDILQDAAKKRFGSDDLKMFSDPEEMKTLINTYLARTELE 250
Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats.
Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 21/227 (9%)
Query: 3 PSHVAPFP-SKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ + + + + F +KDPI+ + Y+ E I ++ T ++ + D RL AL A
Sbjct: 9 STGLTGWAFLQSTYDRQFEHFNKDPILERDNEYFMENIGNVKTAEDLVSDYRLLEVALNA 68
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKT 121
FGL+ ++ I+K+LE +L N+L ++ F ++ F P +
Sbjct: 69 FGLASEIDSKAMIQKVLEDGSEADDALANKLGDDRWIDFTDAFKFGPGLAPVTGLTYKMQ 128
Query: 122 IIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL-----QSFSITPK 176
I D ++ V ++ ++ L+ +R L+D V + SIT +
Sbjct: 129 EIADKNVVQSFEDAVGAQD----------VSMQIALYAERELVDLVTFDDEGEELSITGQ 178
Query: 177 YIS---LPFLKDVLTLGLANPKKYFIESRDNRFRAM--AENFRFQPD 218
+++ P L+ ++ L P + D + + A RF D
Sbjct: 179 WLNIIGQPQLQSMMQTTLGLPSDLALLDIDQQVDILQDAAKKRFGSD 225
Score = 78.8 bits (192), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 85/232 (36%), Gaps = 24/232 (10%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
+K+ + +++YF +NI + + + L D RLL+ L +F + + S ++ VL G
Sbjct: 30 NKDPILERDNEYFMENIGNVKTAEDLVSDYRLLEVALNAFGLASEIDSKAMIQKVLEDGS 89
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIV 251
+ D+R+ + F+F P + +K V F + + +
Sbjct: 90 EADDALANKLGDDRWIDFTDAFKFGPGLAPVTGLTYKMQEIADKNVVQSFEDAVGAQDVS 149
Query: 252 SDQNYY-KLAINSVSSFSD-------------FLKDPKLFKMLQLSLFPLNPEITADKFL 297
Y + + + +F D + P+L M+Q +L +
Sbjct: 150 MQIALYAERELVDLVTFDDEGEELSITGQWLNIIGQPQLQSMMQTTLGLPSDL------- 202
Query: 298 TLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILH 349
+ + D V ++ + F D +++ +++ Y ++
Sbjct: 203 -ALLDIDQQVDILQDAAKKRFGSD--DLKMFSDPEEMKTLINTYLARTELEA 251
Score = 58.7 bits (140), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITL 393
+Q D ++ D ++ + + +G +K+ ++L+S L
Sbjct: 18 LQSTYDRQFEHFN--KDPILERDNEYFMENIGNVKTAEDLVSD-------------YRLL 62
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNA 446
+ AL+A+ L + + ++ VL D+ ANK DDR I AF F
Sbjct: 63 EVALNAFGLASEIDSKAMIQKVLEDGSEADDALANKLGDDRWIDFTDAFKFGP 115
>gi|119384357|ref|YP_915413.1| flagellar protein, putative [Paracoccus denitrificans PD1222]
gi|119374124|gb|ABL69717.1| flagellar protein, putative [Paracoccus denitrificans PD1222]
Length = 264
Score = 148 bits (372), Expect = 5e-33, Method: Composition-based stats.
Identities = 44/237 (18%), Positives = 92/237 (38%), Gaps = 22/237 (9%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
+M + + I S +Y++ + + ++ + + RIL L + G+DS + F
Sbjct: 21 TMLRQRGALSQDHVIRSSKEYFSQRFPLVETADQFVNDYRILTVALRAFGLDSDISNKYF 80
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
L ++ ++D D SF N D RY + + +F + + I + Y
Sbjct: 81 LKKVLEADPNDSGSFINRLSDKRYLRMNQALSFYA-------PLDERGGVIDISSIIEKY 133
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIR--------NHYEILGDSKLFKVVSKKLKLS 657
+ + +EK + P I LAL +R + ++ Y++L L +V L
Sbjct: 134 EIRSLEKNIGGRYPEIELALNARRELSDLAASDASENVKWYQVLSSKPLRRVFEVAYGLG 193
Query: 658 PYFAVLPERKKIRILKKHI-------KINDFKDSKKVEDFLYAAKAMDHQSIDYKKA 707
F+ L +++ LK ++ FK + ++ L ++ +
Sbjct: 194 EGFSALSIDRQLYELKGRTGILTGSNDVSQFKSDEVLDIILKRFLLRSQINVSPVGS 250
Score = 121 bits (303), Expect = 4e-25, Method: Composition-based stats.
Identities = 39/181 (21%), Positives = 77/181 (42%), Gaps = 12/181 (6%)
Query: 21 TVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILES 80
+S+D ++ + Y+ +R + T D+F+ D R+ + AL+AFGL + F+KK+LE+
Sbjct: 28 ALSQDHVIRSSKEYFSQRFPLVETADQFVNDYRILTVALRAFGLDSDISNKYFLKKVLEA 87
Query: 81 DLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKE------ 134
D +D S +N+L+ +Y ++ F P I +II+ Y+ K
Sbjct: 88 DPNDSGSFINRLSDKRYLRMNQALSFYAPLDERGGVIDISSIIEKYEIRSLEKNIGGRYP 147
Query: 135 ------EVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
E S + + Q+ + L ++ + + +L + +
Sbjct: 148 EIELALNARRELSDLAASDASENVKWYQVLSSKPLRRVFEVAYGLGEGFSALSIDRQLYE 207
Query: 189 L 189
L
Sbjct: 208 L 208
Score = 79.5 bits (194), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 9/170 (5%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
++ V +YF + + + DQ D R+L L++F + + FLK VL
Sbjct: 30 SQDHVIRSSKEYFSQRFPLVETADQFVNDYRILTVALRAFGLDSDISNKYFLKKVLEADP 89
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPD----GSLSKRDKILTDMQIEKIVSNYFNNTIDC 247
+ + D R+ M + F G + I+ +I + N +
Sbjct: 90 NDSGSFINRLSDKRYLRMNQALSFYAPLDERGGVIDISSIIEKYEIRSLEKNIGGRYPEI 149
Query: 248 VPIVSDQNYYKLAINSVSS----FSDFLKDPKLFKMLQLSLFPLNPEITA 293
++ + S +S + L L ++ +++ + L +A
Sbjct: 150 ELALNARRELSDLAASDASENVKWYQVLSSKPLRRVFEVA-YGLGEGFSA 198
Score = 72.2 bits (175), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 378 CQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIK 437
+E + L AL A+ L+ ++ L+ VL ++P+D S+ N+ D R ++
Sbjct: 47 PLVETADQFVNDYRILTVALRAFGLDSDISNKYFLKKVLEADPNDSGSFINRLSDKRYLR 106
Query: 438 LNHAFNF----NADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQ 493
+N A +F + G + I + + IR K+ R I A N + ++
Sbjct: 107 MNQALSFYAPLDERGGVIDISSIIEKYEIRSLEKNIGGRYPEIELALNARRELSDLAASD 166
Query: 494 KRINLE 499
N++
Sbjct: 167 ASENVK 172
>gi|163797864|ref|ZP_02191808.1| hypothetical protein BAL199_20070 [alpha proteobacterium BAL199]
gi|159176826|gb|EDP61394.1| hypothetical protein BAL199_20070 [alpha proteobacterium BAL199]
Length = 829
Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats.
Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 6/191 (3%)
Query: 492 TQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFK 551
T ++ ++D + ++ + + ++LL ++R L+F+L + G++S+ L +
Sbjct: 41 TAFAEREDVVRKIDAFKKSVGKLSTVDDLLKDRRTLSFVLSAFGLESEVNNPGKLKAVLN 100
Query: 552 SDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIE 611
SD D SFAN D+R+ E+ + F K + + D + E
Sbjct: 101 SDPDDINSFANRLSDSRFGELAA---FVSAPAFGLKNLTVSDKQSQL---IDKFLTNGFE 154
Query: 612 KKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRI 671
+ ++P AL+F R I ++ N ++ILGD L +V+ L L A K+ +
Sbjct: 155 QSLAAQNPAARDALFFLRRINSVENTFDILGDLPLRSIVTTALNLPAEIARQSVDKQAAL 214
Query: 672 LKKHIKINDFK 682
++ K++ FK
Sbjct: 215 IEAKFKLDSFK 225
Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats.
Identities = 64/540 (11%), Positives = 171/540 (31%), Gaps = 37/540 (6%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
+ VA + Q + ++ V + +++ + +ST+D+ +KD+R S+ L A
Sbjct: 23 MSGLVAFKNYQRDQVAARTAFAEREDVVRKIDAFKKSVGKLSTVDDLLKDRRTLSFVLSA 82
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFAR-----SYDFSPPPKVIQSD 116
FGL + +K +L SD D S N+L+ ++ A ++ +
Sbjct: 83 FGLESEVNNPGKLKAVLNSDPDDINSFANRLSDSRFGELAAFVSAPAFGLKNLTVSDKQS 142
Query: 117 IQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPK 176
+ + + + A ++ +F + I+ + + + D L V + ++ +
Sbjct: 143 QLIDKFLTNGFEQSLAAQNPAARDALFFLRRINSVENTFDILGDLPLRSIVTTALNLPAE 202
Query: 177 YISLPFLKD-VLTLGLANPKKYFIESRDNRFRAMAENFR------FQPDGSLSKRDKILT 229
K L + S N R+ + + + +++ K+
Sbjct: 203 IARQSVDKQAALIEAKFKLDSFKTSSSSNTSRSRLDILQDDLTSISTTNKTINAGLKVAD 262
Query: 230 D--MQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSF----SDFLKDPKLFKMLQLS 283
++E + + Y + P + N + ++ + + + +
Sbjct: 263 SLVAKLESLRTAYTDYDTFVNPAGVNANEITIQQAAIPDLLRQRTLVASANAAVQDTRSA 322
Query: 284 LFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
+ L + + + ++ I ++ D ++ D +L +
Sbjct: 323 ITELEKLFSQARNASSEEDFTEIQAKFTALADTVLGDDGLINSATFTDPNTGLTQNLLRN 382
Query: 344 NCQ---ILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAY 400
D + I + + + I L + + + + +A
Sbjct: 383 GTGGTLPAGTDATPTEIAT-TVNVAGTRVITKSTDLAGFLTDIQTFRDGVSSATYATRQG 441
Query: 401 NLNMQDLDRDQLRNVLTSNPS----DPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMM 456
+L + + ++ + S N + + +
Sbjct: 442 DLTAAESSFTTAKTTFSAAEQRTKINVSSVTNGLSSVKFAA-----------ELDTQALA 490
Query: 457 QSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHS 516
+ +++D + + ++ + ++E + INLE +S V I S
Sbjct: 491 LGQASVKDALTRAGTIGGVLDTIKSLANQALEPDADLAAINLEYDSRVSELQSLIQNAGS 550
>gi|326402279|ref|YP_004282360.1| hypothetical protein ACMV_01310 [Acidiphilium multivorum AIU301]
gi|325049140|dbj|BAJ79478.1| hypothetical protein ACMV_01310 [Acidiphilium multivorum AIU301]
Length = 303
Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 97/244 (39%), Gaps = 4/244 (1%)
Query: 459 RLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFE 518
+ ++ A + + + + + ++ ++ +T +N+ + +
Sbjct: 42 EASYGGATSGTVTSSQNPIIALRIAQQNETKDIQAEAKSPQVQRDIAAFTKAVNSAKTAK 101
Query: 519 ELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNF 578
+LL N +L LL + G+ SQ + S+ DP AN + + ++
Sbjct: 102 QLLQNPTVLKVLLTANGLGSQVGFPALAQKALLSNPSDPNGLANQLSSTNSQWLSTA--- 158
Query: 579 DIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHY 638
+ + K + +Q I + Y + + +++ P ++ ALYF + N
Sbjct: 159 -QIYQFATKGLSIIQKPSSISTLTNAYAEVLWRQSLDKQTPGLSNALYFIQNAQKFTNAT 217
Query: 639 EILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
+ILGDS + VV+ L + A P + + + + ++ F++ + V+ F A+
Sbjct: 218 QILGDSVMRSVVTTALGVPQQIAFQPLLAQEQAITSRLDVSKFQNKQFVQSFADRFLAVT 277
Query: 699 HQSI 702
S
Sbjct: 278 QASN 281
Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 12/239 (5%)
Query: 6 VAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLS 65
+A ++ ++K +K P V + + + + T + +++ + L A GL
Sbjct: 61 IALRIAQQNETKDIQAEAKSPQVQRDIAAFTKAVNSAKTAKQLLQNPTVLKVLLTANGLG 120
Query: 66 DMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARS--YDFSPPP-KVIQSDIQHKTI 122
+K L S+ SDP L NQL+S Q+ + + Y F+ +IQ T+
Sbjct: 121 SQVGFPALAQKALLSNPSDPNGLANQLSSTNSQWLSTAQIYQFATKGLSIIQKPSSISTL 180
Query: 123 IQDYKQSHQH----KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYI 178
Y + K+ L + YF +N K + Q+ D + V + + +
Sbjct: 181 TNAYAEVLWRQSLDKQTPGLSNALYFIQNAQKFTNATQILGDSVMRSVVTTALGVPQQIA 240
Query: 179 SLPFL--KDVLTLGLANP---KKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQ 232
P L + +T L K F++S +RF A+ + GS S + +
Sbjct: 241 FQPLLAQEQAITSRLDVSKFQNKQFVQSFADRFLAVTQASNMNAYGSSSSLVGLAAQAR 299
Score = 68.0 bits (164), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/232 (12%), Positives = 79/232 (34%), Gaps = 7/232 (3%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
+ K + F K ++ + QL ++ +L +L + + + + L
Sbjct: 75 QAEAKSPQVQRDIAAFTKAVNSAKTAKQLLQNPTVLKVLLTANGLGSQVGFPALAQKALL 134
Query: 189 LGLANPKKYFIES--RDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTID 246
++P + ++++ + A+ ++F G + + ++D
Sbjct: 135 SNPSDPNGLANQLSSTNSQWLSTAQIYQFATKGLSIIQKPSSISTLTNAYAEVLWRQSLD 194
Query: 247 -CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDP 305
P +S+ Y+ ++ + L D + ++ +L F L+ +
Sbjct: 195 KQTPGLSNALYFIQNAQKFTNATQILGDSVMRSVVTTALGVPQQI----AFQPLLAQEQA 250
Query: 306 IVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLI 357
I S++ N S + + +Q M + + + +SLI
Sbjct: 251 ITSRLDVSKFQNKQFVQSFADRFLAVTQASNMNAYGSSSSLVGLAAQARSLI 302
Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 36/288 (12%)
Query: 319 HRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKC 378
+++ SQ + + + + + K++++ + K
Sbjct: 43 ASYGGATSGTVTSSQNPIIALRIAQQNETKDIQAEAKSPQVQRDIAAFTKAVNSAKTAKQ 102
Query: 379 QLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSK--DDRLI 436
L+ P L+ L A L Q + L SNPSDP+ AN+ + + +
Sbjct: 103 LLQNPT-------VLKVLLTANGLGSQVGFPALAQKALLSNPSDPNGLANQLSSTNSQWL 155
Query: 437 KLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRI 496
+ F G + ++Q +I YA
Sbjct: 156 STAQIYQFATKG----LSIIQKPSSISTLTNAYAE----------------VLWRQSLDK 195
Query: 497 NLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFL--CEIFKSDL 554
S Y+ N + ++L + + + + + G+ Q + L + S L
Sbjct: 196 QTPGLSNALYFIQNAQKFTNATQILGDSVMRSVVTTALGVPQQIAFQPLLAQEQAITSRL 255
Query: 555 K----DPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHI 598
K F ++ D R+ + + N + +G S Q I
Sbjct: 256 DVSKFQNKQFVQSFAD-RFLAVTQASNMNAYGSSSSLVGLAAQARSLI 302
>gi|218661874|ref|ZP_03517804.1| hypothetical protein RetlI_21473 [Rhizobium etli IE4771]
Length = 133
Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 84/133 (63%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
MI + +A + + V+ V + +YY + I ++++D+F+ D +L+SYA+K
Sbjct: 1 MITASLAYSILSKDMTSSLNKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL DM++A+ F+KK+LESDL+DP S N+L+ +Y+ FA +++F+ P K +Q+D Q
Sbjct: 61 AYGLEDMTYAKAFMKKVLESDLTDPNSYANKLSDARYREFAAAFNFNAPEKDVQTDAQED 120
Query: 121 TIIQDYKQSHQHK 133
+I YKQS
Sbjct: 121 ELIGLYKQSFVDA 133
Score = 108 bits (268), Expect = 6e-21, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 475 SIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
+ A + M + + + YY +IN + S ++ L + ++ ++ +++
Sbjct: 3 TASLAYSILSKDMTSSLNKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAMKAY 62
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
G++ + F+ ++ +SDL DP S+AN D RY+E ++FNF+ VQ
Sbjct: 63 GLEDMTYAKAFMKKVLESDLTDPNSYANKLSDARYREFAAAFNFNA-------PEKDVQT 115
Query: 595 NFHIDDTCDLYKHQMIEK 612
+ D+ LYK ++
Sbjct: 116 DAQEDELIGLYKQSFVDA 133
Score = 88.4 bits (217), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
+ + ++++Y+ +I+K+ SVD D +L Y ++++ + + F+K VL
Sbjct: 20 NKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSYAMKAYGLEDMTYAKAFMKKVLE 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDC 247
L +P Y + D R+R A F F + TD Q ++++ Y + +D
Sbjct: 80 SDLTDPNSYANKLSDARYREFAAAFNFNAP-----EKDVQTDAQEDELIGLYKQSFVDA 133
Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 345 CQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNM 404
++ ++ + Y + K+ S+D+ L +A+ AY L
Sbjct: 20 NKVASQATVKKDAQYYADHINKVTSVDDFLGD-------------YKLYSYAMKAYGLED 66
Query: 405 QDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRD 464
+ ++ VL S+ +DP+SYANK D R + AFNFNA P +Q+ +
Sbjct: 67 MTYAKAFMKKVLESDLTDPNSYANKLSDARYREFAAAFNFNA-----PEKDVQTDAQEDE 121
Query: 465 NVKHYAN 471
+ Y
Sbjct: 122 LIGLYKQ 128
Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ K +++ N + D YY IN V+S DFL D KL+ + + L
Sbjct: 11 LSKDMTSSLNKVASQATVKKDAQYYADHINKVTSVDDFLGDYKLYSY-AMKAYGLEDMTY 69
Query: 293 ADKFLTLMQENDPI---------VSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKK 343
A F+ + E+D F F+ N+ +Q D+Q +++ LYK+
Sbjct: 70 AKAFMKKVLESDLTDPNSYANKLSDARYREFAAAFNF-NAPEKDVQTDAQEDELIGLYKQ 128
Query: 344 NCQIL 348
+
Sbjct: 129 SFVDA 133
>gi|148259125|ref|YP_001233252.1| hypothetical protein Acry_0105 [Acidiphilium cryptum JF-5]
gi|146400806|gb|ABQ29333.1| protein of unknown function DUF1217 [Acidiphilium cryptum JF-5]
Length = 290
Score = 140 bits (352), Expect = 9e-31, Method: Composition-based stats.
Identities = 42/244 (17%), Positives = 97/244 (39%), Gaps = 4/244 (1%)
Query: 459 RLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFE 518
+ ++ A + + + + + ++ ++ +T +N+ + +
Sbjct: 29 EASYGGATSGTVTSSQNPIIALRIAQQNETKDIQAEAKSPQVQRDIAAFTKAVNSAKTAK 88
Query: 519 ELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNF 578
+LL N +L LL + G+ SQ + S+ DP AN + + ++
Sbjct: 89 QLLQNPTVLKVLLTANGLGSQVGFPALAQKALLSNPSDPNGLANQLSSTNSQWLSTA--- 145
Query: 579 DIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHY 638
+ + K + +Q I + Y + + +++ P ++ ALYF + N
Sbjct: 146 -QIYQFATKGLSIIQKPSSISTLTNAYAEVLWRQSLDKQTPGLSNALYFIQNAQKFTNAT 204
Query: 639 EILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMD 698
+ILGDS + VV+ L + A P + + + + ++ F++ + V+ F A+
Sbjct: 205 QILGDSVMRSVVTTALGVPQQIAFQPLLAQEQAITSRLDVSKFQNKQFVQSFADRFLAVT 264
Query: 699 HQSI 702
S
Sbjct: 265 QASN 268
Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 12/239 (5%)
Query: 6 VAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLS 65
+A ++ ++K +K P V + + + + T + +++ + L A GL
Sbjct: 48 IALRIAQQNETKDIQAEAKSPQVQRDIAAFTKAVNSAKTAKQLLQNPTVLKVLLTANGLG 107
Query: 66 DMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARS--YDFSPPP-KVIQSDIQHKTI 122
+K L S+ SDP L NQL+S Q+ + + Y F+ +IQ T+
Sbjct: 108 SQVGFPALAQKALLSNPSDPNGLANQLSSTNSQWLSTAQIYQFATKGLSIIQKPSSISTL 167
Query: 123 IQDYKQSHQH----KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYI 178
Y + K+ L + YF +N K + Q+ D + V + + +
Sbjct: 168 TNAYAEVLWRQSLDKQTPGLSNALYFIQNAQKFTNATQILGDSVMRSVVTTALGVPQQIA 227
Query: 179 SLPFL--KDVLTLGLANP---KKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQ 232
P L + +T L K F++S +RF A+ + GS S + +
Sbjct: 228 FQPLLAQEQAITSRLDVSKFQNKQFVQSFADRFLAVTQASNMNAYGSSSSLVGLAAQAR 286
Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/232 (12%), Positives = 79/232 (34%), Gaps = 7/232 (3%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
+ K + F K ++ + QL ++ +L +L + + + + L
Sbjct: 62 QAEAKSPQVQRDIAAFTKAVNSAKTAKQLLQNPTVLKVLLTANGLGSQVGFPALAQKALL 121
Query: 189 LGLANPKKYFIES--RDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTID 246
++P + ++++ + A+ ++F G + + ++D
Sbjct: 122 SNPSDPNGLANQLSSTNSQWLSTAQIYQFATKGLSIIQKPSSISTLTNAYAEVLWRQSLD 181
Query: 247 -CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDP 305
P +S+ Y+ ++ + L D + ++ +L F L+ +
Sbjct: 182 KQTPGLSNALYFIQNAQKFTNATQILGDSVMRSVVTTALGVPQQI----AFQPLLAQEQA 237
Query: 306 IVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLI 357
I S++ N S + + +Q M + + + +SLI
Sbjct: 238 ITSRLDVSKFQNKQFVQSFADRFLAVTQASNMNAYGSSSSLVGLAAQARSLI 289
Score = 47.9 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 44/288 (15%), Positives = 89/288 (30%), Gaps = 36/288 (12%)
Query: 319 HRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKC 378
+++ SQ + + + + + K++++ + K
Sbjct: 30 ASYGGATSGTVTSSQNPIIALRIAQQNETKDIQAEAKSPQVQRDIAAFTKAVNSAKTAKQ 89
Query: 379 QLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSK--DDRLI 436
L+ P L+ L A L Q + L SNPSDP+ AN+ + + +
Sbjct: 90 LLQNPT-------VLKVLLTANGLGSQVGFPALAQKALLSNPSDPNGLANQLSSTNSQWL 142
Query: 437 KLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRI 496
+ F G + ++Q +I YA
Sbjct: 143 STAQIYQFATKG----LSIIQKPSSISTLTNAYAE----------------VLWRQSLDK 182
Query: 497 NLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFL--CEIFKSDL 554
S Y+ N + ++L + + + + + G+ Q + L + S L
Sbjct: 183 QTPGLSNALYFIQNAQKFTNATQILGDSVMRSVVTTALGVPQQIAFQPLLAQEQAITSRL 242
Query: 555 K----DPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHI 598
K F ++ D R+ + + N + +G S Q I
Sbjct: 243 DVSKFQNKQFVQSFAD-RFLAVTQASNMNAYGSSSSLVGLAAQARSLI 289
>gi|296531762|ref|ZP_06894584.1| possible flagellar protein [Roseomonas cervicalis ATCC 49957]
gi|296267901|gb|EFH13706.1| possible flagellar protein [Roseomonas cervicalis ATCC 49957]
Length = 389
Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/312 (20%), Positives = 105/312 (33%), Gaps = 28/312 (8%)
Query: 388 EPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNAD 447
L AY L+ Q +R VL SNP D +S A + D R +++ N+
Sbjct: 59 ADRRLQTIVLKAYGLDGQIGYDALIRKVLESNPDDSNSVAGRMTDYRYRQISRDLNYG-- 116
Query: 448 GSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFN-SMEQISTQKRINLEINSEVDY 506
G P T A + + A + R +
Sbjct: 117 GIAVPEIPAVPSTTTLQIEGVMAGQSFTAAGASFAGLRIDNVDLQGLTRRQDIAAALQAA 176
Query: 507 YTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKD 566
+ R++ + +++G S + DP S A
Sbjct: 177 FRKADGGAEDISVTALGLRLV--VTDARGRGKGSF----------SFVADPASTA----- 219
Query: 567 NRYKEIISSFNFDIHGE--LSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALA 624
+ + S + G + KV D ID + Y E+ + + A
Sbjct: 220 ---RAFLVS---ETQGSKVVPGSGGPKVGDKETIDFIANRYTQIRFEESLGQSSETLRRA 273
Query: 625 LYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDS 684
+Y KR +P + N + ++ D L +VV L L FA L ++ +L+K + I DFKD
Sbjct: 274 VYAKRMLPQMNNWFSVIADRNLAEVVQNVLGLPDSFASLDVDRQKAVLEKRMSIADFKDP 333
Query: 685 KKVEDFLYAAKA 696
K+ L A
Sbjct: 334 AKLSKLLDRYVA 345
Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats.
Identities = 58/310 (18%), Positives = 112/310 (36%), Gaps = 23/310 (7%)
Query: 2 IPSHVAPFPSKDIQSKL---FSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYA 58
IP+ VA + K +Q K F +KDP++ + Y RE + T + + D+RL +
Sbjct: 10 IPTGVAGW--KLLQGKSPTDFKAFAKDPVLQRDLAYLRETLPTKLTAKDLLADRRLQTIV 67
Query: 59 LKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSP---PPKVIQS 115
LKA+GL + I+K+LES+ D S+ ++ +Y+ +R ++ P
Sbjct: 68 LKAYGLDGQIGYDALIRKVLESNPDDSNSVAGRMTDYRYRQISRDLNYGGIAVPEIPAVP 127
Query: 116 DIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS-FSIT 174
I + + ++ + + L ++
Sbjct: 128 STTTLQIEGVMAGQSFTAAGASFAGLRIDNVDLQGLTRRQDIAA--ALQAAFRKADGGAE 185
Query: 175 PKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQ-PDGSL----SKRDKILT 229
++ L+ V+T K F D + A F GS S K+
Sbjct: 186 DISVTALGLRLVVTDARGRGKGSFSFVADP--ASTARAFLVSETQGSKVVPGSGGPKVGD 243
Query: 230 DMQIEKIVSNYFNNTIDCVPIVSDQN-----YYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
I+ I + Y + S + Y K + ++++ + D L +++Q L
Sbjct: 244 KETIDFIANRYTQIRFEESLGQSSETLRRAVYAKRMLPQMNNWFSVIADRNLAEVVQNVL 303
Query: 285 FPLNPEITAD 294
+ + D
Sbjct: 304 GLPDSFASLD 313
Score = 71.1 bits (172), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 10/164 (6%)
Query: 498 LEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDP 557
+ ++ Y + T + ++LLA++R+ +L++ G+D Q + + ++ +S+ D
Sbjct: 35 PVLQRDLAYLRETLPTKLTAKDLLADRRLQTIVLKAYGLDGQIGYDALIRKVLESNPDDS 94
Query: 558 KSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEK 617
S A D RY++I N +G ++ +I V + +
Sbjct: 95 NSVAGRMTDYRYRQISRDLN---YGGIAVPEIPAVPSTTTLQ--IEGVMAGQSFTAAGAS 149
Query: 618 DPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFA 661
+ + + + +I L K + +
Sbjct: 150 FAGLRID---NVDLQGLTRRQDIAA--ALQAAFRKADGGAEDIS 188
>gi|23011439|ref|ZP_00051796.1| hypothetical protein Magn03006068 [Magnetospirillum magnetotacticum
MS-1]
Length = 325
Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/268 (18%), Positives = 100/268 (37%), Gaps = 7/268 (2%)
Query: 1 MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
M + + + + DP+V+ E YY I + ++D+ + D+RL++YA+K
Sbjct: 1 MTDTLTSYRLIAKDLTASLKRKAADPVVARETAYYEAHIGQVKSVDDLLGDQRLYAYAMK 60
Query: 61 AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
A+GL +M++A+ F++K+LE + S N+L +Y FAR++ F +D
Sbjct: 61 AYGLEEMTYAKAFMRKVLEEGAASSASFANRLADDRYTAFARAFTFGQGFTATGADP--- 117
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
T ++ +AL +S F +++ + + + +S
Sbjct: 118 TTFGSTARNAMLSAPLALADSYDFSGTAEASLTLESRIDAKTTQSV---TIRLNAGILSR 174
Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
+ + + + + DGSL + LTD+ +
Sbjct: 175 QVENLAAVTPTEISQAVMAQIDASPLKGRVQA-GLAADGSLFFQTTALTDLGADGAAGGE 233
Query: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFS 268
N V + +S+
Sbjct: 234 GVNADTVVQAGGAVRTLTIRNAPLSTAD 261
Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 44/97 (45%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRED 544
+ +K + + E YY +I + S ++LL ++R+ + +++ G++ +
Sbjct: 13 KDLTASLKRKAADPVVARETAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEEMTYAKA 72
Query: 545 FLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIH 581
F+ ++ + SFAN D+RY +F F
Sbjct: 73 FMRKVLEEGAASSASFANRLADDRYTAFARAFTFGQG 109
Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 24/175 (13%)
Query: 348 LHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDL 407
D + Y+ +G++KS+D+LL + +A+ AY L
Sbjct: 23 AADPVVARETAYYEAHIGQVKSVDDLLGDQR-------------LYAYAMKAYGLEEMTY 69
Query: 408 DRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVK 467
+ +R VL + S+AN+ DDR AF F Q +
Sbjct: 70 AKAFMRKVLEEGAASSASFANRLADDRYTAFARAFTFG-----------QGFTATGADPT 118
Query: 468 HYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLA 522
+ + R+ + + S +L + S +D T TI +L+
Sbjct: 119 TFGSTARNAMLSAPLALADSYDFSGTAEASLTLESRIDAKTTQSVTIRLNAGILS 173
Score = 94.6 bits (233), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/252 (16%), Positives = 93/252 (36%), Gaps = 19/252 (7%)
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLT 188
+ + V E+ Y+ +I ++ SVD L D+RL Y ++++ + + F++ VL
Sbjct: 20 KRKAADPVVARETAYYEAHIGQVKSVDDLLGDQRLYAYAMKAYGLEEMTYAKAFMRKVLE 79
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
G A+ + D+R+ A A F F + + D + N +
Sbjct: 80 EGAASSASFANRLADDRYTAFARAFTFGQGFTATGADPT--------TFGSTARNAMLSA 131
Query: 249 PIVSDQNY-YKLAI-NSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPI 306
P+ +Y + S++ S ++L+ L+ ++ +T + + +
Sbjct: 132 PLALADSYDFSGTAEASLTLESRIDAKTTQSVTIRLNAGILSRQVENLAAVTPTEISQAV 191
Query: 307 VSQ-----VKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQS--LIKD 359
++Q +K Q D S Q + D + D +Q+ ++
Sbjct: 192 MAQIDASPLKGRVQAGLAADGSLF--FQTTALTDLGADGAAGGEGVNADTVVQAGGAVRT 249
Query: 360 YQLPLGKIKSID 371
+ + + D
Sbjct: 250 LTIRNAPLSTAD 261
Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 46/165 (27%), Gaps = 22/165 (13%)
Query: 224 RDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLS 283
D + + I K ++ + + YY+ I V S D L D +L+ +
Sbjct: 2 TDTLTSYRLIAKDLTASLKRKAADPVVARETAYYEAHIGQVKSVDDLLGDQRLYAY-AMK 60
Query: 284 LFPLNPEITADKFLTLMQEN-------------DPIVSQVKYFFQI--NFHRDNSSSTKI 328
+ L A F+ + E D + F F + T
Sbjct: 61 AYGLEEMTYAKAFMRKVLEEGAASSASFANRLADDRYTAFARAFTFGQGFTATGADPTTF 120
Query: 329 QQDSQIQ------KMLDLYKKNCQILHDDKMQSLIKDYQLPLGKI 367
++ + D Y + ++S I I
Sbjct: 121 GSTARNAMLSAPLALADSYDFSGTAEASLTLESRIDAKTTQSVTI 165
>gi|114800299|ref|YP_758998.1| putative flagellar protein [Hyphomonas neptunium ATCC 15444]
gi|114740473|gb|ABI78598.1| putative flagellar protein [Hyphomonas neptunium ATCC 15444]
Length = 282
Score = 124 bits (310), Expect = 8e-26, Method: Composition-based stats.
Identities = 33/222 (14%), Positives = 80/222 (36%), Gaps = 23/222 (10%)
Query: 495 RINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDL 554
+ ++ ++ DY S E+ L + R++ + + + ++ ++ F+ + +
Sbjct: 30 TNSPQVRNDRDYMIEKFAQPISVEDFLKDSRLVRVTMTAFDLAGEEWKKGFIKKTLEEVS 89
Query: 555 KDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKE 614
+F + +Y + ++ L D I ++ E
Sbjct: 90 DPESTFLARLNNPKYTALANA--------LKPVNDTISLDVDDIAAMAVRFESNSFEIAV 141
Query: 615 EEKDPNIALALYFKRTIPNIRN--------HYEILGDSKLFKVVSKKLKLSPYFAVLPER 666
+ D ++ L+L +K I I Y ++ D + VV L L + LP
Sbjct: 142 GDVDDSMRLSLNYKSEINTIVGSGANEDSIAYRLMADIPAYTVVRSALNLPSDMSNLPVE 201
Query: 667 KKIRILKKHI-------KINDFKDSKKVEDFLYAAKAMDHQS 701
++ ++K + K+++ + V+ + AM S
Sbjct: 202 RQAEMIKDGLKKALGVSKLSEISSPEAVDKMIVRYHAMKSIS 243
Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 13/182 (7%)
Query: 17 KLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKK 76
K + + P V + Y E+ ++++F+KD RL + AF L+ + FIKK
Sbjct: 24 KQLESYTNSPQVRNDRDYMIEKFAQPISVEDFLKDSRLVRVTMTAFDLAGEEWKKGFIKK 83
Query: 77 ILESDLSDPKS-LVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQ---DYKQSHQH 132
LE +SDP+S + +LN+ KY A + + D ++ + +
Sbjct: 84 TLEE-VSDPESTFLARLNNPKYTALANALKPVNDTISLDVDDIAAMAVRFESNSFEIAVG 142
Query: 133 KEEVALEESKYFRKNIHKI--------NSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK 184
+ ++ S ++ I+ I + +L D V + ++ +LP +
Sbjct: 143 DVDDSMRLSLNYKSEINTIVGSGANEDSIAYRLMADIPAYTVVRSALNLPSDMSNLPVER 202
Query: 185 DV 186
Sbjct: 203 QA 204
Score = 63.0 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 19/218 (8%)
Query: 132 HKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGL 191
+ Y + + SV+ KD RL+ + +F + + F+K L
Sbjct: 30 TNSPQVRNDRDYMIEKFAQPISVEDFLKDSRLVRVTMTAFDLAGEEWKKGFIKKTLEEVS 89
Query: 192 ANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIV 251
+ + ++ A+A + D ++S + M + +++ D +
Sbjct: 90 DPESTFLARLNNPKYTALANALKPVND-TISLDVDDIAAMAVRFESNSFEIAVGDVDDSM 148
Query: 252 SDQNYYKLAINSVSS--------FSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQEN 303
YK IN++ + D + +++ +L + L + ++
Sbjct: 149 RLSLNYKSEINTIVGSGANEDSIAYRLMADIPAYTVVRSALNLPSDM----SNLPVERQA 204
Query: 304 DPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLY 341
+ I +K + S ++I + KM+ Y
Sbjct: 205 EMIKDGLKKALGV------SKLSEISSPEAVDKMIVRY 236
Score = 41.0 bits (94), Expect = 0.84, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 31/173 (17%)
Query: 369 SIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDS-YA 427
S+++ L ++ + A++L ++ + ++ L SDP+S +
Sbjct: 51 SVEDFLKDSR-------------LVRVTMTAFDLAGEEWKKGFIKKTLEE-VSDPESTFL 96
Query: 428 NKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSM 487
+ + + L +A + TI +V A + ++
Sbjct: 97 ARLNNPKYTALANA-------------LKPVNDTISLDVDDIAAMAVRFESNSFEI--AV 141
Query: 488 EQISTQKRINLEINSEVDYYTLNINTIHSFE-ELLANKRILNFLLESKGIDSQ 539
+ R++L SE++ + S L+A+ + + + S
Sbjct: 142 GDVDDSMRLSLNYKSEINTIVGSGANEDSIAYRLMADIPAYTVVRSALNLPSD 194
>gi|259417640|ref|ZP_05741559.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
gi|259346546|gb|EEW58360.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
Length = 650
Score = 119 bits (298), Expect = 2e-24, Method: Composition-based stats.
Identities = 39/249 (15%), Positives = 85/249 (34%), Gaps = 49/249 (19%)
Query: 473 KRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLE 532
S N ++ ++ + + ++ +Y+ NI + S E+LL ++R+L ++
Sbjct: 8 PSSGVAGWNFLQSTYDRQYDAFVKSGSLKNDSEYFAENIGGVTSSEDLLNDRRLLQVAVK 67
Query: 533 SKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKV 592
+ G++ + L + ANT D RY E ++F F +
Sbjct: 68 AFGLEEEINYRALLQRALNEGTSASDALANTMNDERYVEFSNAFGFGPGQSPMTSDSKAM 127
Query: 593 QDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTI--------------------- 631
Q D ++ E+ E D + AL+ KR +
Sbjct: 128 Q------AVIDKFQSASFEEAVGEVDETMRTALFAKRAMIEVFGEPDEDDVSQLSVKERA 181
Query: 632 ------------------PNIRN----HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKI 669
P + + +I+ L + L++ A L E ++I
Sbjct: 182 LREFDLSMKEINGKGDDVPGVTSVEDQWQDIVQRDTLREFFDTTLRIPAGAAGLEEDERI 241
Query: 670 RILKKHIKI 678
++ ++ ++
Sbjct: 242 QLYRERAQV 250
Score = 117 bits (293), Expect = 6e-24, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 2/167 (1%)
Query: 3 PSHVAPF-PSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
S VA + + + + K + + Y+ E I +++ ++ + D+RL A+KA
Sbjct: 9 SSGVAGWNFLQSTYDRQYDAFVKSGSLKNDSEYFAENIGGVTSSEDLLNDRRLLQVAVKA 68
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKT 121
FGL + + +++ L S +L N +N +Y F+ ++ F P + SD +
Sbjct: 69 FGLEEEINYRALLQRALNEGTSASDALANTMNDERYVEFSNAFGFGPGQSPMTSDSKAMQ 128
Query: 122 IIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL 168
+ D QS +E V E + R + ++ ++F + D
Sbjct: 129 AVIDKFQSASFEEAVG-EVDETMRTALFAKRAMIEVFGEPDEDDVSQ 174
Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats.
Identities = 87/615 (14%), Positives = 159/615 (25%), Gaps = 84/615 (13%)
Query: 133 KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLA 192
K +S+YF +NI + S + L DRRLL +++F + + L+ L G +
Sbjct: 31 KSGSLKNDSEYFAENIGGVTSSEDLLNDRRLLQVAVKAFGLEEEINYRALLQRALNEGTS 90
Query: 193 NPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS 252
D R+ + F F P S D I+K S F + V
Sbjct: 91 ASDALANTMNDERYVEFSNAFGFGPGQSPMTSDSKAMQAVIDKFQSASFEEAVGEVDETM 150
Query: 253 DQNYYKLAI----------------------------------------NSVSSFSDFLK 272
+ V+S D +
Sbjct: 151 RTALFAKRAMIEVFGEPDEDDVSQLSVKERALREFDLSMKEINGKGDDVPGVTSVEDQWQ 210
Query: 273 DPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDS 332
D L+ F I A E D + + Q+ F D T
Sbjct: 211 DIVQRDTLR-EFFDTTLRIPAGA---AGLEEDERIQLYRERAQVVFGTD--DPTMFFSGE 264
Query: 333 QIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGP-NSAEEPII 391
++ +K + DD + ++ +D ++S L +
Sbjct: 265 NKGIIVSAFKTRATVDGDDAAEIA----KIAKLSEHILDQMVSRDAALNEEWDFISRQEP 320
Query: 392 TLQFALDAYNLNMQDLDR--DQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS 449
+F A L R + + + D + A N +A +
Sbjct: 321 LAEFMKVALELPDDIATRNTSDAMRIYREKAIE----VFGTDDPNI--FASAANLDA--T 372
Query: 450 IGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTL 509
+ + +R + R + + Y +
Sbjct: 373 LNTYRENAAESGMRSSEISGNLRTVETILKFSFGKEDAVDGGDTDAADTAAVDAGWYSIM 432
Query: 510 NINTIHSFEELLANKRILNFLLE-SKGIDSQKVREDFL----------CEIFKSDLKDPK 558
+ R LN L+ S G++ + E + D K
Sbjct: 433 GQTGV---------PRFLNTALDVSSGLEPGETFEALTVEEQLAIYKEKAVEIFGTDDLK 483
Query: 559 SFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
Y+ E + N + GE Q D EK+ EE
Sbjct: 484 ELTGPYQMGAVSEAYRT-NAEAAGESEFFITYYSQIAERELDILFQSDETDAEKEFEEAL 542
Query: 619 PNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKI 678
+ Y I+G + + + L L + + + + ++
Sbjct: 543 EKLRTMNDEDDGPSANSQWYTIMGQQAMTEFMQVALGLPKEVGQMDIDQAVGVYRRKA-- 600
Query: 679 NDFKDSKKVEDFLYA 693
+ K +F+
Sbjct: 601 EQVLGTDKPSEFISR 615
>gi|296535173|ref|ZP_06897395.1| hypothetical protein HMPREF0731_2877 [Roseomonas cervicalis ATCC
49957]
gi|296264501|gb|EFH10904.1| hypothetical protein HMPREF0731_2877 [Roseomonas cervicalis ATCC
49957]
Length = 256
Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 6/224 (2%)
Query: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540
++ + ++ + + + I ++D I+ S EELL + LLES G+ Q+
Sbjct: 31 KQTLKNEDKATERLSKDAAITRDLDRLQKAIDKAKSPEELLKDPTARRVLLESFGLAGQE 90
Query: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600
+ +DL + + + + ++ +F G + K++D +
Sbjct: 91 NNVGLAVKALTADLSKDGNLPSRLTNKAWSAAATTLDFAKSG------LDKLRDPKVFAE 144
Query: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660
Y + + +A AL+ + Y ILGD L +V L
Sbjct: 145 IRANYIEYKRVDEVSAQSQPVADALHVRSMEDKTPGVYNILGDKILRRVALTLAGLPETI 204
Query: 661 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDY 704
A + R L+K I + F + E + M
Sbjct: 205 AFQSIESQARQLEKRIDLKQFATPEGREKLIQRYLVMAGDETTS 248
Score = 80.7 bits (197), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 5/176 (2%)
Query: 8 PFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDM 67
+ + K +SKD ++ + ++ I + +E +KD L++FGL+
Sbjct: 30 YKQTLKNEDKATERLSKDAAITRDLDRLQKAIDKAKSPEELLKDPTARRVLLESFGLAGQ 89
Query: 68 SHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQ-----HKTI 122
+ K L +DLS +L ++L + + A + DF+ D +
Sbjct: 90 ENNVGLAVKALTADLSKDGNLPSRLTNKAWSAAATTLDFAKSGLDKLRDPKVFAEIRANY 149
Query: 123 IQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYI 178
I+ + + + ++ + R K V + D+ L L +
Sbjct: 150 IEYKRVDEVSAQSQPVADALHVRSMEDKTPGVYNILGDKILRRVALTLAGLPETIA 205
Score = 63.0 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/218 (14%), Positives = 71/218 (32%), Gaps = 8/218 (3%)
Query: 104 YDFSPPPKVIQSDIQ------HKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQL 157
+ + + S + +D K+ + +K I K S ++L
Sbjct: 11 FGYGSDGGTVMSGSERIGLYKQTLKNEDKATERLSKDAAITRDLDRLQKAIDKAKSPEEL 70
Query: 158 FKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQP 217
KD +L+SF + + ++ LT L+ + + A A F
Sbjct: 71 LKDPTARRVLLESFGLAGQENNVGLAVKALTADLSKDGNLPSRLTNKAWSAAATTLDFAK 130
Query: 218 DGSLSKRDK-ILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKL 276
G RD + +++ I + V+D + + + + L D L
Sbjct: 131 SGLDKLRDPKVFAEIRANYIEYKRVDEVSAQSQPVADALHVRSMEDKTPGVYNILGDKIL 190
Query: 277 FKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFF 314
++ L+L L I + ++ + + ++
Sbjct: 191 RRV-ALTLAGLPETIAFQSIESQARQLEKRIDLKQFAT 227
>gi|218662936|ref|ZP_03518866.1| CTP synthetase [Rhizobium etli IE4771]
Length = 391
Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 625 LYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDS 684
LYF+R P I + Y+ILGDS LF+ + LS Y + + K+ +++ I I D D
Sbjct: 282 LYFERKAPEISSAYDILGDSALFEFFTTSFNLSSYVSNMDVEKQAEMVENFIDIKDLSDP 341
Query: 685 KKVEDFLYAAKAM------DHQSIDYKKALFSSPNQNKDPWN 720
KV+D + AM + L S + D
Sbjct: 342 DKVDDLIKRFTAMYDMANGTGTTSTALSILTGSAAISADTLL 383
Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 136 VALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKD-------VLT 188
+ + YF + +I+S + D L ++ SF+++ ++ K +
Sbjct: 276 IEAARNLYFERKAPEISSAYDILGDSALFEFFTTSFNLSSYVSNMDVEKQAEMVENFIDI 335
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRF-QPDGSLSKRDKILT 229
L++P K D+ + + G+ S ILT
Sbjct: 336 KDLSDPDKV-----DDLIKRFTAMYDMANGTGTTSTALSILT 372
Score = 42.5 bits (98), Expect = 0.25, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 39/153 (25%), Gaps = 14/153 (9%)
Query: 214 RFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKD 273
F GS K + + V + Y++ +SS D L D
Sbjct: 241 GFGERGSEGKIHAARFARERKVPYFGICFGMQMAVIEAARNLYFERKAPEISSAYDILGD 300
Query: 274 PKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQ 333
LF+ S F L+ ++ + NF S + D
Sbjct: 301 SALFEFFTTS-FNLSSYVSNMDVEK------------QAEMVENFIDIKDLSDPDKVDDL 347
Query: 334 IQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGK 366
I++ +Y I +
Sbjct: 348 IKRFTAMYDMANGTG-TTSTALSILTGSAAISA 379
>gi|162147451|ref|YP_001601912.1| hypothetical protein GDI_1667 [Gluconacetobacter diazotrophicus PAl
5]
gi|209545560|ref|YP_002277789.1| hypothetical protein Gdia_3449 [Gluconacetobacter diazotrophicus
PAl 5]
gi|161786028|emb|CAP55610.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209533237|gb|ACI53174.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 281
Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/239 (16%), Positives = 89/239 (37%), Gaps = 8/239 (3%)
Query: 485 NSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLAN--KRILNFLLESKGIDSQKVR 542
+ + + N I +EV + + ++I S +L++N +L + + S
Sbjct: 20 DEETAAANYTKENPTIQNEVTSFEESASSITSAADLMSNKNYTAEQVVLGAYNLSSISGE 79
Query: 543 EDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTC 602
+ ++ D KS A + + + + F G+ + I
Sbjct: 80 TALVKDLLTQDPTSSKSVAKSSGNATWLAFADA--FSTWGQNGGSASASPFTSDTISSIV 137
Query: 603 DLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKL-SPYFA 661
++ E ++ + ALYF R + + + +I+ ++ L KVV F
Sbjct: 138 TKFEESQYESSTANQNSGVGNALYFTRNMTSSMSLADIMSNATLLKVVETVSGFNPDQFG 197
Query: 662 VLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM---DHQSIDYKKALFSSPNQNKD 717
L +++R+L+ + ++DF + V+ + AM + Q+ D + +
Sbjct: 198 ALDYPEQVRLLQNKVDLSDFSTPEGVQKYAEQYLAMLQINPQTPDTPITMMDLFGGGTN 256
Score = 75.7 bits (184), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 13/189 (6%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFI--KDKRLFSYAL 59
I ++A KD ++ + ++P + E + E I++ + + K+ L
Sbjct: 11 ISLYLA--AEKDEETAAANYTKENPTIQNEVTSFEESASSITSAADLMSNKNYTAEQVVL 68
Query: 60 KAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYD-FSPPPKVIQSDIQ 118
A+ LS +S +K +L D + KS+ + + FA ++ + +
Sbjct: 69 GAYNLSSISGETALVKDLLTQDPTSSKSVAKSSGNATWLAFADAFSTWGQNGGSASASPF 128
Query: 119 HKTIIQDYKQSHQH--------KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQS 170
I + + + + YF +N+ S+ + + LL V
Sbjct: 129 TSDTISSIVTKFEESQYESSTANQNSGVGNALYFTRNMTSSMSLADIMSNATLLKVVETV 188
Query: 171 FSITPKYIS 179
P
Sbjct: 189 SGFNPDQFG 197
Score = 71.4 bits (173), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 7/193 (3%)
Query: 108 PPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLL--D 165
I + + + ++ + E F ++ I S L ++
Sbjct: 6 SGTSPISLYLAAEKDEETAAANYTKENPTIQNEVTSFEESASSITSAADLMSNKNYTAEQ 65
Query: 166 YVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRD 225
VL +++++ +KD+LT + K S + + A A+ F S
Sbjct: 66 VVLGAYNLSSISGETALVKDLLTQDPTSSKSVAKSSGNATWLAFADAFSTWGQNGGSASA 125
Query: 226 KILTDMQIEKIV-----SNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKML 280
T I IV S Y ++T + V + Y+ + S S +D + + L K++
Sbjct: 126 SPFTSDTISSIVTKFEESQYESSTANQNSGVGNALYFTRNMTSSMSLADIMSNATLLKVV 185
Query: 281 QLSLFPLNPEITA 293
+ + A
Sbjct: 186 ETVSGFNPDQFGA 198
Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 29/201 (14%)
Query: 343 KNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNL 402
+ +Q+ + ++ I S +L+S K Q L AYNL
Sbjct: 25 AANYTKENPTIQNEVTSFEESASSITSAADLMSNKNYTAE-----------QVVLGAYNL 73
Query: 403 NMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFN-FNADGSIGPIPMMQSRLT 461
+ + ++++LT +P+ S A S + + AF+ + +G S
Sbjct: 74 SSISGETALVKDLLTQDPTSSKSVAKSSGNATWLAFADAFSTWGQNGGSASASPFTSDTI 133
Query: 462 IRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELL 521
K ++ S +N + Y+T N+ + S +++
Sbjct: 134 SSIVTKFEESQYESSTANQNSGVGNAL-----------------YFTRNMTSSMSLADIM 176
Query: 522 ANKRILNFLLESKGIDSQKVR 542
+N +L + G + +
Sbjct: 177 SNATLLKVVETVSGFNPDQFG 197
>gi|218679039|ref|ZP_03526936.1| hypothetical protein RetlC8_09234 [Rhizobium etli CIAT 894]
Length = 264
Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 50/244 (20%)
Query: 193 NPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTID------ 246
+P ++++A+A F F DG+++ T Q ++ Y N+
Sbjct: 1 DPSSVVNTQGGDKYKALAAQFSFNADGTVT--GTAQTAAQKASVIETYTLNSQSVIIDNS 58
Query: 247 ---------CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
++ YY I ++++ D + D +L + + + + + TA
Sbjct: 59 VGSDVYYVGATAAEYNKAYYTAKIGTITNVDDLVADKRLTSYITTA-YSMGADFTAAALR 117
Query: 298 TLMQENDPIVSQVKYFFQ----INFHRDNSSSTK--IQQDSQIQKMLDLYKKNCQILHDD 351
T++ DP +Q+ F NF D S+S+ +Q Q K+
Sbjct: 118 TVL--TDPGYAQLMGFTNVYNAFNFKADGSTSSTARVQSVDQANKLKSAASSTTNYYSVT 175
Query: 352 KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
S I ++D+LL+ + ++ DAY L
Sbjct: 176 SQSSA----------ITNVDDLLADS-------------VMARYIKDAYGLGT-SFSNAD 211
Query: 412 LRNV 415
L+N+
Sbjct: 212 LKNI 215
Score = 98.0 bits (242), Expect = 5e-18, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 86/244 (35%), Gaps = 32/244 (13%)
Query: 422 DPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAEN 481
DP S N D+ L F+FNADG++ Q+ ++ Y +S+ +
Sbjct: 1 DPSSVVNTQGGDKYKALAAQFSFNADGTVTGT--AQTAAQKASVIETYTLNSQSVIIDNS 58
Query: 482 KSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKV 541
+ +T N YYT I TI + ++L+A+KR+ +++ + +
Sbjct: 59 VGSDVYYVGATAAEYNK------AYYTAKIGTITNVDDLVADKRLTSYITTAYSMG---- 108
Query: 542 REDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDT 601
DF ++ L DP +A + + ++FNF G S +VQ +
Sbjct: 109 -ADFTAAALRTVLTDP-GYAQLM---GFTNVYNAFNFKADG--STSSTARVQSVDQANKL 161
Query: 602 CDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFA 661
+ I N ++L DS + + + L F+
Sbjct: 162 KSAASSTTNYYSVTSQSSA-------------ITNVDDLLADSVMARYIKDAYGLGTSFS 208
Query: 662 VLPE 665
Sbjct: 209 NADL 212
Score = 95.7 bits (236), Expect = 3e-17, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 38/230 (16%)
Query: 84 DPKSLVNQLNSLKYQYFARSYDFSPPPKVI---QSDIQHKTIIQDYKQSHQH-------- 132
DP S+VN KY+ A + F+ V Q+ Q ++I+ Y + Q
Sbjct: 1 DPSSVVNTQGGDKYKALAAQFSFNADGTVTGTAQTAAQKASVIETYTLNSQSVIIDNSVG 60
Query: 133 ------KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
A Y+ I I +VD L D+RL Y+ ++S+ + + L+ V
Sbjct: 61 SDVYYVGATAAEYNKAYYTAKIGTITNVDDLVADKRLTSYITTAYSMGADFTAAA-LRTV 119
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTID 246
LT +P + N + F F+ DGS S ++ + Q K+ S
Sbjct: 120 LT----DPGYAQLMGFTNVY----NAFNFKADGSTSSTARVQSVDQANKLKS-------- 163
Query: 247 CVPIVSDQNYY--KLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD 294
S NYY +++++ D L D + + ++ + AD
Sbjct: 164 --AASSTTNYYSVTSQSSAITNVDDLLADSVMARYIKDAYGLGTSFSNAD 211
Score = 65.7 bits (158), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 18/156 (11%)
Query: 33 RYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQL 92
YY +I I+ +D+ + DKRL SY A+ + A + +L DP +
Sbjct: 76 AYYTAKIGTITNVDDLVADKRLTSYITTAYSMGADFTAAAL-RTVLT----DPG-YAQLM 129
Query: 93 NSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFR--KNIHK 150
+ +++F + + A + Y+
Sbjct: 130 G---FTNVYNAFNFKADGSTSSTARVQSV------DQANKLKSAASSTTNYYSVTSQSSA 180
Query: 151 INSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
I +VD L D + Y+ ++ + S LK++
Sbjct: 181 ITNVDDLLADSVMARYIKDAYGL-GTSFSNADLKNI 215
>gi|99082811|ref|YP_614965.1| hypothetical protein TM1040_2971 [Ruegeria sp. TM1040]
gi|99039091|gb|ABF65703.1| conserved hypothetical protein [Ruegeria sp. TM1040]
Length = 650
Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/249 (16%), Positives = 87/249 (34%), Gaps = 49/249 (19%)
Query: 473 KRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLE 532
S N ++ ++ + ++ ++ +Y+ NI + S E+LL ++R+L ++
Sbjct: 8 PSSGVAGWNFLQSTYDRQYDAFVQSGKLKNDSEYFAENIGEVTSSEDLLNDRRLLQVAVK 67
Query: 533 SKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKV 592
+ G++ + L + ANT D RY E ++F F +
Sbjct: 68 AFGLEEEINYRALLQRALNEGTSASDALANTMNDERYVEFSNAFGFGPGQSPMTSDSKAM 127
Query: 593 QDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTI--------------------- 631
Q D ++ E+ E D + AL+ KR +
Sbjct: 128 Q------AVIDKFQSASFEEAVGEVDETMRTALFAKRAMIEVFGEPDEDDVSQLSVRERA 181
Query: 632 ------------------PNIRN----HYEILGDSKLFKVVSKKLKLSPYFAVLPERKKI 669
P + + +I+ L + L++S A L + ++I
Sbjct: 182 LREFDLAMKEINGKDDDVPGVTSVEDQWEDIIERDTLREFFDTTLRISAGAAGLEDDERI 241
Query: 670 RILKKHIKI 678
++ ++ +I
Sbjct: 242 QLYRERAQI 250
Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 73/167 (43%), Gaps = 2/167 (1%)
Query: 3 PSHVAPF-PSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
S VA + + + + + + + Y+ E I +++ ++ + D+RL A+KA
Sbjct: 9 SSGVAGWNFLQSTYDRQYDAFVQSGKLKNDSEYFAENIGEVTSSEDLLNDRRLLQVAVKA 68
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKT 121
FGL + + +++ L S +L N +N +Y F+ ++ F P + SD +
Sbjct: 69 FGLEEEINYRALLQRALNEGTSASDALANTMNDERYVEFSNAFGFGPGQSPMTSDSKAMQ 128
Query: 122 IIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVL 168
+ D QS +E V E + R + ++ ++F + D
Sbjct: 129 AVIDKFQSASFEEAVG-EVDETMRTALFAKRAMIEVFGEPDEDDVSQ 174
Score = 101 bits (250), Expect = 6e-19, Method: Composition-based stats.
Identities = 82/626 (13%), Positives = 182/626 (29%), Gaps = 88/626 (14%)
Query: 108 PPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYV 167
P V + T + Y Q +S+YF +NI ++ S + L DRRLL
Sbjct: 8 PSSGVAGWNFLQSTYDRQYDAFVQS--GKLKNDSEYFAENIGEVTSSEDLLNDRRLLQVA 65
Query: 168 LQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKI 227
+++F + + L+ L G + D R+ + F F P S D
Sbjct: 66 VKAFGLEEEINYRALLQRALNEGTSASDALANTMNDERYVEFSNAFGFGPGQSPMTSDSK 125
Query: 228 LTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAI-------------------------- 261
I+K S F + V +
Sbjct: 126 AMQAVIDKFQSASFEEAVGEVDETMRTALFAKRAMIEVFGEPDEDDVSQLSVRERALREF 185
Query: 262 --------------NSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIV 307
V+S D +D L+ F I+A E+D +
Sbjct: 186 DLAMKEINGKDDDVPGVTSVEDQWEDIIERDTLR-EFFDTTLRISAGA---AGLEDDERI 241
Query: 308 SQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKI 367
+ QI F D T ++ +K + DD ++ +
Sbjct: 242 QLYRERAQIIFGTD--DPTVFFSAENKDTIISAFKTRATVNGDDAAETA----KTAELSE 295
Query: 368 KSIDNLLSGKCQLEGP-NSAEEPIITLQFALDAYNLNMQDLDR--------DQLRNVLTS 418
+D ++S L + +F A L R + + +
Sbjct: 296 HILDQMISRDAALNEEWDFISRQEPLAEFMKTALELPDDIATRETSEAMRIYREKAIEAF 355
Query: 419 NPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHD 478
DP+ +A+ + D +++ NA + + S L + + ++ +
Sbjct: 356 GTDDPNVFASAANLDATLEVYRE---NATNAGLSSSEISSNLRTAETILKFS-YNQGDAI 411
Query: 479 AENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSF-------EELLANKRILNFLL 531
+ + ++ + V + + S +L ++++ +
Sbjct: 412 DGGDADAAATAEIDAGWYSVMGQTGVPRFLNTALDVSSALAPGEIFSDLTIDEQLTIYKD 471
Query: 532 ESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGK 591
++ + ++ + + + Y+ N S F + +++ +++
Sbjct: 472 KAVELFGTADLKEL------TGPYQIGAVNDAYRTNAEAAGESEFFITYYSDIAERELNT 525
Query: 592 VQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVS 651
+ + D + E+ EE + + I+G + +
Sbjct: 526 LFQSDDTD------AEKAFEEALEE----LRTMNDEDNGPSANSQWFTIMGQQAMTDFMQ 575
Query: 652 KKLKLSPYFAVLPERKKIRILKKHIK 677
L L + + + + K+ +
Sbjct: 576 VALGLPKEVGQMDIDQAVEVYKRKAQ 601
Score = 71.1 bits (172), Expect = 7e-10, Method: Composition-based stats.
Identities = 59/358 (16%), Positives = 115/358 (32%), Gaps = 56/358 (15%)
Query: 352 KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
K+++ + + +G++ S ++LL+ + LQ A+ A+ L + R
Sbjct: 34 KLKNDSEYFAENIGEVTSSEDLLNDRR-------------LLQVAVKAFGLEEEINYRAL 80
Query: 412 LRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN 471
L+ L S D+ AN D+R ++ ++AF F G PM ++ + +
Sbjct: 81 LQRALNEGTSASDALANTMNDERYVEFSNAFGFGP----GQSPMTSDSKAMQAVIDKF-- 134
Query: 472 RKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLL 531
+ S +A + +M KR +E+ E D ++ ++ R + +
Sbjct: 135 QSASFEEAVGEVDETMRTALFAKRAMIEVFGEPDEDDVSQLSVRERA-----LREFDLAM 189
Query: 532 ES-KGIDS-------------QKVREDFLCEIFKSDLKDPKSFANTYKDNR---YKEIIS 574
+ G D + D L E F + L+ A D R Y+E
Sbjct: 190 KEINGKDDDVPGVTSVEDQWEDIIERDTLREFFDTTLRISAGAAGLEDDERIQLYRERAQ 249
Query: 575 SFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY-------F 627
+ D +K + ++ + L
Sbjct: 250 II-------FGTDDPTVFFSAENKDTIISAFKTRATVNGDDAAETAKTAELSEHILDQMI 302
Query: 628 KRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSK 685
R I L + + L+L A + +RI ++ I F
Sbjct: 303 SRDAALNEEWDFISRQEPLAEFMKTALELPDDIATRETSEAMRIYREKA-IEAFGTDD 359
Score = 46.4 bits (108), Expect = 0.019, Method: Composition-based stats.
Identities = 57/491 (11%), Positives = 139/491 (28%), Gaps = 59/491 (12%)
Query: 233 IEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNP--- 289
++ ++ + + +D Y+ I V+S D L D +L ++ +
Sbjct: 18 LQSTYDRQYDAFVQSGKLKNDSEYFAENIGEVTSSEDLLNDRRLLQVAVKAFGLEEEINY 77
Query: 290 ---------EITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDL 340
E T+ ND + F + +S + I K
Sbjct: 78 RALLQRALNEGTSASDALANTMNDERYVEFSNAFGFGPGQSPMTSDSKAMQAVIDKFQSA 137
Query: 341 YKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAY 400
+ D+ M++ + + + D + + E + +
Sbjct: 138 SFEEAVGEVDETMRTALFAKRAMIEVFGEPDEDDVSQLSVRERALREFDLAMKEINGKDD 197
Query: 401 NLNMQDLDRDQLRNVLTSNPSDP--------DSYANKSKDDRLIKLNHAFNFNADGSIGP 452
++ DQ +++ + + A +DD I+L G+ P
Sbjct: 198 DVPGVTSVEDQWEDIIERDTLREFFDTTLRISAGAAGLEDDERIQLYRERAQIIFGTDDP 257
Query: 453 IPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNIN 512
+ + + R D ++ + E + ++ ++ I+
Sbjct: 258 TVFFSAENK-DTIISAFKTRATVNGDDAAETAKTAELSEHILDQMISRDAALNEEWDFIS 316
Query: 513 TIHSFEELLA------NKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKD 566
E + + E+ I +K E F DP FA+
Sbjct: 317 RQEPLAEFMKTALELPDDIATRETSEAMRIYREKAIEAF-------GTDDPNVFASAANL 369
Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626
+ E+ + + + ++ N +T + + + + A
Sbjct: 370 DATLEV-----YRENATNAGLSSSEISSNLRTAETILKFSYNQGDAIDGGDADAAA---- 420
Query: 627 FKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPY------FAVLPERKKIRILKKH----- 675
T Y ++G + + + ++ L +S F+ L +++ I K
Sbjct: 421 ---TAEIDAGWYSVMGQTGVPRFLNTALDVSSALAPGEIFSDLTIDEQLTIYKDKAVELF 477
Query: 676 --IKINDFKDS 684
+ +
Sbjct: 478 GTADLKELTGP 488
>gi|218512422|ref|ZP_03509262.1| hypothetical protein Retl8_01379 [Rhizobium etli 8C-3]
Length = 249
Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/217 (19%), Positives = 82/217 (37%), Gaps = 12/217 (5%)
Query: 242 NNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL-FPLNPEITADKFLTLM 300
T + + + Y + ++++ + + DP + L+ + P + K +
Sbjct: 1 QTTNTKIAAGARTDDYSSRMATIANVDELIADPAITNFLKSTYNLPFDISDAELKSILTD 60
Query: 301 QENDPIVSQVKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIK 358
NF D S + + +Q Q Q D Y D+ ++ +
Sbjct: 61 ATAAAAAGHADLNADFNFAADGSLPAVSSVQTADQAQTTNDNYMARYDDERDEAIEEVAD 120
Query: 359 DYQL---------PLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDR 409
+Y +IK++++ L + S ++ AL A+ L Q++ R
Sbjct: 121 NYSSMMADSTSLLDTAEIKTVNDFLRTNAAADFKKSNDKLPDPYHVALQAFGLTDQEVPR 180
Query: 410 DQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNA 446
+R +LTS+ DP+ Y KD+R+ L AF A
Sbjct: 181 SMMRKILTSDAYDPNGYIASLKDERITNLARAFQLRA 217
Score = 74.1 bits (180), Expect = 7e-11, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 16/243 (6%)
Query: 358 KDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLT 417
+ + D+ S + + F YNL D+ +L+++LT
Sbjct: 1 QTTNTKIAAGARTDDYSSRMATIANVDELIADPAITNFLKSTYNL-PFDISDAELKSILT 59
Query: 418 SNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS----RLTIRDNVKHYANRK 473
+ LN FNF ADGS+ + +Q+ + T + + Y + +
Sbjct: 60 DATAAAA--------AGHADLNADFNFAADGSLPAVSSVQTADQAQTTNDNYMARYDDER 111
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNIN-TIHSFEELLANKRILNFLLE 532
+ +++SM ST EI + D+ N + L + + L+
Sbjct: 112 DEAIEEVADNYSSMMADSTSLLDTAEIKTVNDFLRTNAAADFKKSNDKLPDP--YHVALQ 169
Query: 533 SKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKV 592
+ G+ Q+V + +I SD DP + + KD R + +F G
Sbjct: 170 AFGLTDQEVPRSMMRKILTSDAYDPNGYIASLKDERITNLARAFQLRAPTARPQHLCGAA 229
Query: 593 QDN 595
+ +
Sbjct: 230 RRD 232
Score = 61.4 bits (147), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 40 KHISTIDEFI----------KDKRL---FSYALKAFGLSDMSHAEKFIKKILESDLSDPK 86
I T+++F+ + +L + AL+AFGL+D ++KIL SD DP
Sbjct: 136 AEIKTVNDFLRTNAAADFKKSNDKLPDPYHVALQAFGLTDQEVPRSMMRKILTSDAYDPN 195
Query: 87 SLVNQLNSLKYQYFARSYDFSPPPKVIQ 114
+ L + AR++ P Q
Sbjct: 196 GYIASLKDERITNLARAFQLRAPTARPQ 223
Score = 60.7 bits (145), Expect = 8e-07, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 25/208 (12%)
Query: 32 ERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQ 91
Y R+ I+ +DE I D + ++ + L ++ +K IL + +
Sbjct: 13 TDDYSSRMATIANVDELIADPAITNFLKSTYNLPFDI-SDAELKSILTDATAAAAAGHAD 71
Query: 92 LNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIH-- 149
LN+ FA V +D T + ++E E + + +
Sbjct: 72 LNAD--FNFAADGSLPAVSSVQTADQAQTTNDNYMARYDDERDEAIEEVADNYSSMMADS 129
Query: 150 -------KINSVDQLF----------KDRRL---LDYVLQSFSITPKYISLPFLKDVLTL 189
+I +V+ + +L LQ+F +T + + ++ +LT
Sbjct: 130 TSLLDTAEIKTVNDFLRTNAAADFKKSNDKLPDPYHVALQAFGLTDQEVPRSMMRKILTS 189
Query: 190 GLANPKKYFIESRDNRFRAMAENFRFQP 217
+P Y +D R +A F+ +
Sbjct: 190 DAYDPNGYIASLKDERITNLARAFQLRA 217
Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 18/180 (10%)
Query: 136 VALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPK 195
A + + + I +VD+L D + +++ ++++ P IS LK +LT A
Sbjct: 8 AAGARTDDYSSRMATIANVDELIADPAITNFLKSTYNL-PFDISDAELKSILTDATAAAA 66
Query: 196 KYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQ- 254
+ + F F DGSL + T Q + NY D ++
Sbjct: 67 AGHADLNAD--------FNFAADGSLPAVSSVQTADQAQTTNDNYMARYDDERDEAIEEV 118
Query: 255 -NYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYF 313
+ Y + +S D ++ L AD + + DP ++ F
Sbjct: 119 ADNYSSMMADSTSLLD-------TAEIKTVNDFLRTNAAADFKKSNDKLPDPYHVALQAF 171
Score = 41.8 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 14/148 (9%)
Query: 492 TQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFK 551
+ + D Y+ + TI + +EL+A+ I NFL + + + + L I
Sbjct: 1 QTTNTKIAAGARTDDYSSRMATIANVDELIADPAITNFLKSTYNL-PFDISDAELKSILT 59
Query: 552 SDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIE 611
+ ++ + FNF G L + VQ T D Y + +
Sbjct: 60 DATAAAAAGH--------ADLNADFNFAADGSLPA--VSSVQTADQAQTTNDNYMARYDD 109
Query: 612 KKEEEKDPNIALALYFKRTIPNIRNHYE 639
+++E + +A + + + + +
Sbjct: 110 ERDEAIEE---VADNYSSMMADSTSLLD 134
>gi|190894704|ref|YP_001984997.1| hypothetical protein RHECIAT_PC0000367 [Rhizobium etli CIAT 652]
gi|190700365|gb|ACE94447.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 193
Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 143 YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESR 202
YF +NI I SVD RL +YVL +F ++ +Y S F KDVLT L + + +
Sbjct: 47 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 106
Query: 203 DNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYK 258
D+ + ++A+ F F DGS+ +L++ QI + S Y + V Y++
Sbjct: 107 DDVYVSLAKAFNFNEDGSVDGG--LLSEDQISLVTSAYAVASATIASKVILLRYHR 160
Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
Y+ E I I+++D+F+ RL +Y L AFGLS + F K +L SDL D S VNQL+
Sbjct: 47 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 106
Query: 94 SLKYQYFARSYDFSPPPKVIQSDIQHKTI 122
Y A++++F+ V + I
Sbjct: 107 DDVYVSLAKAFNFNEDGSVDGGLLSEDQI 135
Score = 100 bits (249), Expect = 7e-19, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 506 YYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYK 565
Y+ NI +I S ++ L++ R+ N++L + G+ ++ F ++ SDL D SF N
Sbjct: 47 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 106
Query: 566 DNRYKEIISSFNFDIHGELSHKKIGKVQ 593
D+ Y + +FNF+ G + + + Q
Sbjct: 107 DDVYVSLAKAFNFNEDGSVDGGLLSEDQ 134
Score = 87.2 bits (214), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 359 DYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTS 418
++ + I S+D+ LS + L A+ L+ + ++VLTS
Sbjct: 47 YFEENIASITSVDDFLSSSR-------------LKNYVLTAFGLSTEYTSSSFRKDVLTS 93
Query: 419 NPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ D DS+ N+ DD + L AFNFN DGS+ + + ++++ +
Sbjct: 94 DLDDADSFVNQLDDDVYVSLAKAFNFNEDGSVDGGLLSEDQISLVTSA 141
Score = 57.6 bits (137), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 256 YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQ------ 309
Y++ I S++S DFL +L + + F L+ E T+ F + +D +
Sbjct: 47 YFEENIASITSVDDFLSSSRLKNYVLTA-FGLSTEYTSSSFRKDVLTSDLDDADSFVNQL 105
Query: 310 -----VKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHD 350
V NF+ D S + + QI + Y +
Sbjct: 106 DDDVYVSLAKAFNFNEDGSVDGGLLSEDQISLVTSAYAVASATIAS 151
Score = 47.9 bits (112), Expect = 0.006, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 626 YFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSK 685
YF+ I +I + + L S+L V LS + +K + +D D+
Sbjct: 47 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSS-------FRKDVLTSDLDDAD 99
Query: 686 KVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQNNVSLQLS 735
++ D +L + N N+D + ++ +SL S
Sbjct: 100 ---------SFVNQLDDDVYVSLAKAFNFNEDGSVDGGLLSEDQISLVTS 140
>gi|58038542|ref|YP_190506.1| hypothetical protein GOX0053 [Gluconobacter oxydans 621H]
gi|58000956|gb|AAW59850.1| Hypothetical protein GOX0053 [Gluconobacter oxydans 621H]
Length = 273
Score = 107 bits (266), Expect = 8e-21, Method: Composition-based stats.
Identities = 41/229 (17%), Positives = 81/229 (35%), Gaps = 13/229 (5%)
Query: 494 KRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSD 553
++ ++ V + + +I + E+LL N + L +L + G+ S + L ++ D
Sbjct: 29 EKTSVSAQQAVTAFQKDAASIKTPEQLLKNYKALTVVLGAYGMSSVIGQTAVLKDLMTQD 88
Query: 554 LKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKK 613
KS A T ++ +K ++F S + + + Y E
Sbjct: 89 PTSSKSLAQTSGNSAWKAFANAF--------SDWSTSPLASSDTVQSITQSYLTNSYEDS 140
Query: 614 EEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLS-PYFAVLPERKKIRIL 672
+ + P + ALYF RT ++ D KL KV F L +++R+L
Sbjct: 141 LQTETPGLGDALYFTRTATTDMTLANVMADPKLLKVAEVVSGFDTTQFGALDYDQQVRLL 200
Query: 673 KKHIKINDFKDSKKVEDFLYAAKAMDH----QSIDYKKALFSSPNQNKD 717
+ ++ + ++ F A+ S L
Sbjct: 201 GSKLDMSKLSTKQGIQQFAQQYLALLQIHPVTSTTPASMLTLYGGSGSS 249
Score = 79.5 bits (194), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/181 (16%), Positives = 71/181 (39%), Gaps = 5/181 (2%)
Query: 2 IPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKA 61
IP +V+ +D + + S + +++ I T ++ +K+ + + L A
Sbjct: 11 IPQYVSIIKDEDSSANKWEKTSVSAQQA--VTAFQKDAASIKTPEQLLKNYKALTVVLGA 68
Query: 62 FGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSY-DFSPPPKVIQSDIQ-- 118
+G+S + +K ++ D + KSL + ++ FA ++ D+S P +Q
Sbjct: 69 YGMSSVIGQTAVLKDLMTQDPTSSKSLAQTSGNSAWKAFANAFSDWSTSPLASSDTVQSI 128
Query: 119 HKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYI 178
++ + + + E L ++ YF + ++ + D +LL
Sbjct: 129 TQSYLTNSYEDSLQTETPGLGDALYFTRTATTDMTLANVMADPKLLKVAEVVSGFDTTQF 188
Query: 179 S 179
Sbjct: 189 G 189
Score = 73.7 bits (179), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 69/157 (43%), Gaps = 1/157 (0%)
Query: 137 ALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKK 196
A + F+K+ I + +QL K+ + L VL ++ ++ LKD++T + K
Sbjct: 35 AQQAVTAFQKDAASIKTPEQLLKNYKALTVVLGAYGMSSVIGQTAVLKDLMTQDPTSSKS 94
Query: 197 YFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNY 256
S ++ ++A A F L+ D + + Q + ++Y ++ P + D Y
Sbjct: 95 LAQTSGNSAWKAFANAFSDWSTSPLASSDTVQSITQ-SYLTNSYEDSLQTETPGLGDALY 153
Query: 257 YKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITA 293
+ + + ++ + DPKL K+ ++ + A
Sbjct: 154 FTRTATTDMTLANVMADPKLLKVAEVVSGFDTTQFGA 190
Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 22/192 (11%)
Query: 351 DKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRD 410
D+ S K + + +++ ++ P + L L AY ++
Sbjct: 20 DEDSSANKWEKTSVSAQQAVTAFQKDAASIKTPEQLLKNYKALTVVLGAYGMSSVIGQTA 79
Query: 411 QLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYA 470
L++++T +P+ S A S + +AF+ P+ S T++ + Y
Sbjct: 80 VLKDLMTQDPTSSKSLAQTSGNSAWKAFANAFS-----DWSTSPLASSD-TVQSITQSYL 133
Query: 471 NRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL 530
S+ Q T + Y+T T + ++A+ ++L
Sbjct: 134 TN----------SYEDSLQTETPGL------GDALYFTRTATTDMTLANVMADPKLLKVA 177
Query: 531 LESKGIDSQKVR 542
G D+ +
Sbjct: 178 EVVSGFDTTQFG 189
>gi|218516824|ref|ZP_03513664.1| hypothetical protein Retl8_26089 [Rhizobium etli 8C-3]
Length = 164
Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 143 YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESR 202
YF +NI I SVD RL +YVL +F ++ +Y S F KDVLT L + + +
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 77
Query: 203 DNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYK 258
D+ + ++A+ F F DGS+ +L++ QI + S Y + V Y++
Sbjct: 78 DDVYVSLAKAFNFNEDGSVDGG--LLSEDQISLVTSAYAVASATIASKVILLRYHR 131
Score = 95.7 bits (236), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
Y+ E I I+++D+F+ RL +Y L AFGLS + F K +L SDL D S VNQL+
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 77
Query: 94 SLKYQYFARSYDFSPPPKVIQSDIQHKTI 122
Y A++++F+ V + I
Sbjct: 78 DDVYVSLAKAFNFNEDGSVDGGLLSEDQI 106
Score = 94.6 bits (233), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%)
Query: 506 YYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYK 565
Y+ NI +I S ++ L++ R+ N++L + G+ ++ F ++ SDL D SF N
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQLD 77
Query: 566 DNRYKEIISSFNFDIHGELSHKKIGKVQ 593
D+ Y + +FNF+ G + + + Q
Sbjct: 78 DDVYVSLAKAFNFNEDGSVDGGLLSEDQ 105
Score = 81.5 bits (199), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 359 DYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTS 418
++ + I S+D+ LS + L A+ L+ + ++VLTS
Sbjct: 18 YFEENIASITSVDDFLSSSR-------------LKNYVLTAFGLSTEYTSSSFRKDVLTS 64
Query: 419 NPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ D DS+ N+ DD + L AFNFN DGS+ + + ++++ +
Sbjct: 65 DLDDADSFVNQLDDDVYVSLAKAFNFNEDGSVDGGLLSEDQISLVTSA 112
Score = 53.3 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 12/106 (11%)
Query: 256 YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQ------ 309
Y++ I S++S DFL +L + + F L+ E T+ F + +D +
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTA-FGLSTEYTSSSFRKDVLTSDLDDADSFVNQL 76
Query: 310 -----VKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHD 350
V NF+ D S + + QI + Y +
Sbjct: 77 DDDVYVSLAKAFNFNEDGSVDGGLLSEDQISLVTSAYAVASATIAS 122
Score = 44.1 bits (102), Expect = 0.080, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 626 YFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSK 685
YF+ I +I + + L S+L V LS + +K + +D D+
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSS-------FRKDVLTSDLDDAD 70
Query: 686 KVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQNNVSLQLS 735
++ D +L + N N+D + ++ +SL S
Sbjct: 71 ---------SFVNQLDDDVYVSLAKAFNFNEDGSVDGGLLSEDQISLVTS 111
>gi|218677561|ref|ZP_03525458.1| hypothetical protein RetlC8_01365 [Rhizobium etli CIAT 894]
Length = 251
Score = 89.2 bits (219), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 86/246 (34%), Gaps = 24/246 (9%)
Query: 128 QSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVL 187
+ A + + Y++ I I++VDQL D RL ++V +F I P ++ L+ +L
Sbjct: 26 RKSASTAGKADDAAVYYQATIAGISNVDQLLTDSRLNNFVRNAFGI-PSTVTDVNLRAIL 84
Query: 188 TLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDC 247
T +S + +A F F+ DG+L T QI T D
Sbjct: 85 TD----------QSGTGTYADVAAAFNFKADGTLKDGMAAQTATQIRDTKFAASTRTDD- 133
Query: 248 VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITAD-KFLTLMQENDPI 306
Y ++++ + D L D + L+ + AD K +
Sbjct: 134 ---------YSARMSTIGNVDDLLADDAITNFLKSTYNLPTGISNADLKSILTDATAAAA 184
Query: 307 VSQVKYFFQINFHRDNSSS--TKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPL 364
NF D S + +Q Q Q D Y D+ + + +Y +
Sbjct: 185 AGHADLNADFNFAADGSLPVVSSVQTADQAQTTNDNYMARYDDERDEAIDEVASNYSKMM 244
Query: 365 GKIKSI 370
S+
Sbjct: 245 ADSSSL 250
Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats.
Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 26/221 (11%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
YY+ I IS +D+ + D RL ++ AFG+ +D++ L +Q
Sbjct: 41 YYQATIAGISNVDQLLTDSRLNNFVRNAFGIPSTV-----------TDVNLRAILTDQSG 89
Query: 94 SLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINS 153
+ Y A +++F + + + + A + + + I +
Sbjct: 90 TGTYADVAAAFNFKADGTL------KDGMAAQTATQIRDTKFAASTRTDDYSARMSTIGN 143
Query: 154 VDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENF 213
VD L D + +++ ++++ P IS LK +LT A + + F
Sbjct: 144 VDDLLADDAITNFLKSTYNL-PTGISNADLKSILTDATAAAAAGHADLNAD--------F 194
Query: 214 RFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQ 254
F DGSL + T Q + NY D D+
Sbjct: 195 NFAADGSLPVVSSVQTADQAQTTNDNYMARYDDERDEAIDE 235
Score = 65.3 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 54/182 (29%), Gaps = 28/182 (15%)
Query: 484 FNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVRE 543
F ++ + + YY I I + ++LL + R+ NF+ + GI V +
Sbjct: 19 FTPPRRLRKSASTAGKADDAAVYYQATIAGISNVDQLLTDSRLNNFVRNAFGI-PSTVTD 77
Query: 544 DFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCD 603
L I + Y ++ ++FNF G L + T
Sbjct: 78 VNLRAILT----------DQSGTGTYADVAAAFNFKADGTL---------KDGMAAQTAT 118
Query: 604 LYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVL 663
+ D + + I N ++L D + + L +
Sbjct: 119 QIRDTKFAASTRTDDYSAR--------MSTIGNVDDLLADDAITNFLKSTYNLPTGISNA 170
Query: 664 PE 665
Sbjct: 171 DL 172
Score = 64.5 bits (155), Expect = 6e-08, Method: Composition-based stats.
Identities = 43/247 (17%), Positives = 76/247 (30%), Gaps = 38/247 (15%)
Query: 229 TDMQIEKIVSNYFNNTIDCVPIVSDQN-YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPL 287
TD + D YY+ I +S+ L D +L ++ + F +
Sbjct: 13 TDRSRPFTPPRRLRKSASTAGKADDAAVYYQATIAGISNVDQLLTDSRLNNFVRNA-FGI 71
Query: 288 NPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNS--SSTKIQQDSQIQKMLDLYKKNC 345
+T ++ + + NF D + Q +QI+
Sbjct: 72 PSTVTDVNLRAILTDQSGTGTYADVAAAFNFKADGTLKDGMAAQTATQIRDTKFAASTR- 130
Query: 346 QILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQ 405
DY + I ++D+LL+ F YNL
Sbjct: 131 -----------TDDYSARMSTIGNVDDLLADDA-------------ITNFLKSTYNL-PT 165
Query: 406 DLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDN 465
+ L+++LT + LN FNF ADGS+ + +Q+ +
Sbjct: 166 GISNADLKSILTDATAAAA--------AGHADLNADFNFAADGSLPVVSSVQTADQAQTT 217
Query: 466 VKHYANR 472
+Y R
Sbjct: 218 NDNYMAR 224
Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats.
Identities = 51/285 (17%), Positives = 93/285 (32%), Gaps = 69/285 (24%)
Query: 352 KMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQ 411
K YQ + I ++D LL+ F +A+ + +
Sbjct: 34 KADDAAVYYQATIAGISNVDQLLTDSR-------------LNNFVRNAFGI-PSTVTDVN 79
Query: 412 LRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYAN 471
LR +LT +S + AFNF ADG++ Q+ IRD
Sbjct: 80 LRAILTD----------QSGTGTYADVAAAFNFKADGTLKDGMAAQTATQIRDT------ 123
Query: 472 RKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLL 531
++ D Y+ ++TI + ++LLA+ I NFL
Sbjct: 124 -------------------------KFAASTRTDDYSARMSTIGNVDDLLADDAITNFLK 158
Query: 532 ESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGK 591
+ + + L I + ++ + FNF G L +
Sbjct: 159 STYNL-PTGISNADLKSILTDATAAAAAGH--------ADLNADFNFAADGSL--PVVSS 207
Query: 592 VQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRN 636
VQ T D Y + ++++E D +A + + + + +
Sbjct: 208 VQTADQAQTTNDNYMARYDDERDEAIDE---VASNYSKMMADSSS 249
Score = 41.4 bits (95), Expect = 0.55, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 608 QMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF------A 661
+ + K A+Y++ TI I N ++L DS+L V + A
Sbjct: 23 RRLRKSASTAGKADDAAVYYQATIAGISNVDQLLTDSRLNNFVRNAFGIPSTVTDVNLRA 82
Query: 662 VLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKA 696
+L ++ +FK ++D + A A
Sbjct: 83 ILTDQSGTGTYADVAAAFNFKADGTLKDGMAAQTA 117
>gi|218510514|ref|ZP_03508392.1| hypothetical protein RetlB5_25561 [Rhizobium etli Brasil 5]
Length = 112
Score = 87.2 bits (214), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 143 YFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESR 202
YF +NI I SVD RL +YVL +F ++ +Y S F KDVLT L + + +
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQFD 77
Query: 203 DNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
D+ + ++A+ F F DGS+ +L++ QI + S
Sbjct: 78 DDVYVSLAKAFNFNEDGSVDGG--LLSEDQISLVTSA 112
Score = 85.7 bits (210), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLN 93
Y+ E I I+++D+F+ RL +Y L AFGLS + F K +L SDL D S VNQ +
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQFD 77
Query: 94 SLKYQYFARSYDFSPPPKVIQSDIQHKTI 122
Y A++++F+ V + I
Sbjct: 78 DDVYVSLAKAFNFNEDGSVDGGLLSEDQI 106
Score = 84.9 bits (208), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 506 YYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYK 565
Y+ NI +I S ++ L++ R+ N++L + G+ ++ F ++ SDL D SF N +
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSSFRKDVLTSDLDDADSFVNQFD 77
Query: 566 DNRYKEIISSFNFDIHGELSHKKIGKVQ 593
D+ Y + +FNF+ G + + + Q
Sbjct: 78 DDVYVSLAKAFNFNEDGSVDGGLLSEDQ 105
Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 359 DYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTS 418
++ + I S+D+ LS + L A+ L+ + ++VLTS
Sbjct: 18 YFEENIASITSVDDFLSSSR-------------LKNYVLTAFGLSTEYTSSSFRKDVLTS 64
Query: 419 NPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNV 466
+ D DS+ N+ DD + L AFNFN DGS+ + + ++++ +
Sbjct: 65 DLDDADSFVNQFDDDVYVSLAKAFNFNEDGSVDGGLLSEDQISLVTSA 112
Score = 44.1 bits (102), Expect = 0.099, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 256 YYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQ------ 309
Y++ I S++S DFL +L + + F L+ E T+ F + +D +
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTA-FGLSTEYTSSSFRKDVLTSDLDDADSFVNQF 76
Query: 310 -----VKYFFQINFHRDNSSSTKIQQDSQIQKMLDL 340
V NF+ D S + + QI +
Sbjct: 77 DDDVYVSLAKAFNFNEDGSVDGGLLSEDQISLVTSA 112
Score = 38.3 bits (87), Expect = 4.3, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 626 YFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSK 685
YF+ I +I + + L S+L V LS + +K + +D D+
Sbjct: 18 YFEENIASITSVDDFLSSSRLKNYVLTAFGLSTEYTSSS-------FRKDVLTSDLDDA- 69
Query: 686 KVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQNNVSLQLS 735
+ F+ D +L + N N+D + ++ +SL S
Sbjct: 70 --DSFVNQFD------DDVYVSLAKAFNFNEDGSVDGGLLSEDQISLVTS 111
>gi|218506595|ref|ZP_03504473.1| hypothetical protein RetlB5_02794 [Rhizobium etli Brasil 5]
Length = 235
Score = 85.3 bits (209), Expect = 4e-14, Method: Composition-based stats.
Identities = 54/306 (17%), Positives = 104/306 (33%), Gaps = 81/306 (26%)
Query: 287 LNPEITADKFLTLMQENDPIVSQVKYFFQ----INFHRDNSSSTKI--QQDSQIQKMLDL 340
+ + TA ++ DP +Q+ F NF D S+ST Q Q K+
Sbjct: 1 MGADFTAPALRMVL--TDPSYAQLMGFTNVYNAFNFKADGSTSTTARAQTIDQANKLASA 58
Query: 341 YKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAY 400
I ++D+LL+ + +++ DAY
Sbjct: 59 ASSTANYYSVTSQS----------SGITNVDDLLADS-------------VMVRYIKDAY 95
Query: 401 NLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRL 460
L + + +L+N+LT SY R LN FNFNADGSI +
Sbjct: 96 GLGV-NFSNAELKNILT-----DTSYTAA---HRQAGLNADFNFNADGSINGSVI----- 141
Query: 461 TIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEEL 520
+ + +K + + ++ I + + +++
Sbjct: 142 ---------------------------QTAAQRKSTTDKSAANAAHFNAMIGNVTNVDDI 174
Query: 521 LANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDI 580
+++ +N+L S ++ + ++ L DP + + Y ++ FNF
Sbjct: 175 MSDPVAVNYLRT-----SMQIADSVSDATLRTFLVDPAAASAQS----YSDVHDLFNFKT 225
Query: 581 HGELSH 586
G ++
Sbjct: 226 DGSVAT 231
Score = 70.3 bits (170), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 73/248 (29%), Gaps = 35/248 (14%)
Query: 92 LNSLKYQYF------ARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFR 145
L Y +++F + A + Y+
Sbjct: 14 LTDPSYAQLMGFTNVYNAFNFKADGSTSTTARAQT------IDQANKLASAASSTANYYS 67
Query: 146 --KNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRD 203
I +VD L D ++ Y+ ++ + S LK++LT
Sbjct: 68 VTSQSSGITNVDDLLADSVMVRYIKDAYGL-GVNFSNAELKNILTDTSYTAAH------- 119
Query: 204 NRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINS 263
R + +F F DGS++ I T Q + ++ ++ I +
Sbjct: 120 -RQAGLNADFNFNADGSIN-GSVIQTAAQRKSTTDKS----------AANAAHFNAMIGN 167
Query: 264 VSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIV-SQVKYFFQINFHRDN 322
V++ D + DP L+ S+ + A L+ S NF D
Sbjct: 168 VTNVDDIMSDPVAVNYLRTSMQIADSVSDATLRTFLVDPAAASAQSYSDVHDLFNFKTDG 227
Query: 323 SSSTKIQQ 330
S +T
Sbjct: 228 SVATLYAT 235
Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 60/233 (25%)
Query: 435 LIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQK 494
+ +AFNF ADGS Q+ I
Sbjct: 25 FTNVYNAFNFKADGSTSTTARAQT-------------------------------IDQAN 53
Query: 495 RINLEINSEVDYY--TLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKS 552
++ +S +YY T + I + ++LLA+ ++ ++ ++ G+ L I
Sbjct: 54 KLASAASSTANYYSVTSQSSGITNVDDLLADSVMVRYIKDAYGLG-VNFSNAELKNILT- 111
Query: 553 DLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEK 612
S+ + R + + FNF+ G ++ I Q +
Sbjct: 112 ----DTSYTAAH---RQAGLNADFNFNADGSINGSVI------------------QTAAQ 146
Query: 613 KEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
++ D + A A +F I N+ N +I+ D + ++++ +
Sbjct: 147 RKSTTDKSAANAAHFNAMIGNVTNVDDIMSDPVAVNYLRTSMQIADSVSDATL 199
Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 25/184 (13%)
Query: 40 KHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQY 99
I+ +D+ + D + Y A+GL ++ + +K IL +
Sbjct: 73 SGITNVDDLLADSVMVRYIKDAYGLG-VNFSNAELKNILTDTSYTAA--------HRQAG 123
Query: 100 FARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFK 159
++F+ + S IQ + + + + +F I + +VD +
Sbjct: 124 LNADFNFNADGSINGSVIQTA-------AQRKSTTDKSAANAAHFNAMIGNVTNVDDIMS 176
Query: 160 DRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDG 219
D ++Y+ S I L L +P +S + + + F F+ DG
Sbjct: 177 DPVAVNYLRTSMQIADSVSDAT-----LRTFLVDPAAASAQS----YSDVHDLFNFKTDG 227
Query: 220 SLSK 223
S++
Sbjct: 228 SVAT 231
>gi|218513230|ref|ZP_03510070.1| hypothetical protein Retl8_05741 [Rhizobium etli 8C-3]
Length = 173
Score = 70.3 bits (170), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 82/232 (35%), Gaps = 63/232 (27%)
Query: 361 QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP 420
I ++D+LL+ + ++ DAY L + + +L+N+LT
Sbjct: 5 TSQSSGITNVDDLLADS-------------VMARYIKDAYGLGV-NFSNAELKNILT--- 47
Query: 421 SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE 480
SYA LN FNFNADGSI +
Sbjct: 48 --DSSYAAAQGQ---AGLNADFNFNADGSINGSVI------------------------- 77
Query: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540
+ + +K + + ++ I ++ + ++++++ +++L S +
Sbjct: 78 -------QTAAQRKSTTDKSAANAAHFNAMIGSVTNVDDIMSDPVAVSYLRT-----SMQ 125
Query: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKV 592
+ + ++ L DP + + Y ++ FNF G ++ +
Sbjct: 126 IADSVSDATLRTFLVDPAAASAQ----GYSDVHDLFNFKTDGSVATLYATQT 173
Score = 63.3 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 21/185 (11%)
Query: 149 HKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRA 208
I +VD L D + Y+ ++ + S LK++LT Y
Sbjct: 9 SGITNVDDLLADSVMARYIKDAYGL-GVNFSNAELKNILTD-----SSYAAAQGQ---AG 59
Query: 209 MAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFS 268
+ +F F DGS++ I T Q + ++ ++ I SV++
Sbjct: 60 LNADFNFNADGSIN-GSVIQTAAQRKSTTDKS----------AANAAHFNAMIGSVTNVD 108
Query: 269 DFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIV-SQVKYFFQINFHRDNSSSTK 327
D + DP L+ S+ + A L+ NF D S +T
Sbjct: 109 DIMSDPVAVSYLRTSMQIADSVSDATLRTFLVDPAAASAQGYSDVHDLFNFKTDGSVATL 168
Query: 328 IQQDS 332
+
Sbjct: 169 YATQT 173
Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 68/190 (35%), Gaps = 25/190 (13%)
Query: 40 KHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQY 99
I+ +D+ + D + Y A+GL ++ + +K IL S +
Sbjct: 9 SGITNVDDLLADSVMARYIKDAYGLG-VNFSNAELKNILT-----DSSYA---AAQGQAG 59
Query: 100 FARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFK 159
++F+ + S IQ + + + + +F I + +VD +
Sbjct: 60 LNADFNFNADGSINGSVIQTA-------AQRKSTTDKSAANAAHFNAMIGSVTNVDDIMS 112
Query: 160 DRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDG 219
D + Y+ S I +S L+ L +P + + + + F F+ DG
Sbjct: 113 DPVAVSYLRTSMQIADS-VSDATLRTFL----VDPAAASAQG----YSDVHDLFNFKTDG 163
Query: 220 SLSKRDKILT 229
S++ T
Sbjct: 164 SVATLYATQT 173
Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 27/158 (17%)
Query: 508 TLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDN 567
T + I + ++LLA+ + ++ ++ G+ L I S+A
Sbjct: 5 TSQSSGITNVDDLLADSVMARYIKDAYGLG-VNFSNAELKNILT-----DSSYAAAQGQA 58
Query: 568 RYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYF 627
FNF+ G ++ I Q +++ D + A A +F
Sbjct: 59 GLNA---DFNFNADGSINGSVI------------------QTAAQRKSTTDKSAANAAHF 97
Query: 628 KRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
I ++ N +I+ D + ++++ +
Sbjct: 98 NAMIGSVTNVDDIMSDPVAVSYLRTSMQIADSVSDATL 135
Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/204 (14%), Positives = 71/204 (34%), Gaps = 38/204 (18%)
Query: 258 KLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVS--QVKYFFQ 315
+ +++ D L D + + ++ + L + + ++ ++ + Q
Sbjct: 5 TSQSSGITNVDDLLADSVMARYIK-DAYGLGVNFSNAELKNILTDSSYAAAQGQAGLNAD 63
Query: 316 INFHRDNSS-STKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLL 374
NF+ D S + IQ +Q + DK + + +G + ++D+++
Sbjct: 64 FNFNADGSINGSVIQTAAQRKST------------TDKSAANAAHFNAMIGSVTNVDDIM 111
Query: 375 SGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDR 434
S + ++ + + LR L DP + + +
Sbjct: 112 SDPVAVSYLRTSMQIA--------------DSVSDATLRTFL----VDPAAASAQG---- 149
Query: 435 LIKLNHAFNFNADGSIGPIPMMQS 458
++ FNF DGS+ + Q+
Sbjct: 150 YSDVHDLFNFKTDGSVATLYATQT 173
>gi|85089600|ref|XP_958023.1| hypothetical protein NCU10030 [Neurospora crassa OR74A]
gi|28919331|gb|EAA28787.1| predicted protein [Neurospora crassa OR74A]
Length = 783
Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats.
Identities = 54/313 (17%), Positives = 97/313 (30%), Gaps = 27/313 (8%)
Query: 59 LKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQ 118
+FGL + + + S + K N L + F + P + D
Sbjct: 292 FGSFGLGASFGHQAIFRDLFVSTPTGDKFYANSLTD---KSFLPDFFMGTNPVAVVVDGS 348
Query: 119 HKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYI 178
+ I ++A + N+ I L + F I I
Sbjct: 349 RRDRIAYAGDL-----DIAARSALTSTHNLGSILGSLDLLGSYQ----ATPGFFIPNAKI 399
Query: 179 SLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVS 238
L GL I N A+A F D + +E S
Sbjct: 400 QQEP----LANGLDVNITGLIGYSFNLVTAVAAVFMHTGDVRFATTWAPKVQKLLEWADS 455
Query: 239 NYFNNTI---DCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQ-LSLFPLNPEITAD 294
+N + + D NYY + V + + L L + +Q L+ + P + D
Sbjct: 456 QTLDNGLFNISDASLGGDWNYYDPTQSGVVTKFNVLYAYALQETVQILAAGGIEPTVYQD 515
Query: 295 KFLTLMQENDPIV--SQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDK 352
+ + + D + ++K ++ + T QDS +L +N +
Sbjct: 516 RLEKIREAIDTALWSDELKAYYVSE-----AIPTGFAQDSNALAILAGVNRNPTHSTETI 570
Query: 353 MQSLIKDYQLPLG 365
+ +L KD P+G
Sbjct: 571 LSTLSKDLMSPVG 583
>gi|226294031|gb|EEH49451.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 595
Score = 43.7 bits (101), Expect = 0.12, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 10/100 (10%)
Query: 568 RYKEIISSFNFDIHGELSHKKIGKVQDN---FHIDDTCDLYKHQMIEKKEEEKDPNIALA 624
RY + F F +G +S G+ + T Y E LA
Sbjct: 249 RY--LADRFAFATNGNISTSGQGRDDNGDLLAVAGKTLSRYIVSSFESNIGTNGNGNKLA 306
Query: 625 LYFKRTIPNIR-NHYEILGDSKLFKVVSKKLKLSPYFAVL 663
L F R P + L + L + A +
Sbjct: 307 LVFGRHEPMVAFAALAKLATDRYPNFF----GLPEHGASM 342
>gi|60099458|dbj|BAD89968.1| phototropin [Phaseolus vulgaris]
Length = 996
Score = 43.3 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 12/180 (6%)
Query: 189 LGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCV 248
+A + N++ A A F DG+ +K+DK T+ NY N +
Sbjct: 54 SAIAFSNSVSNKESANKWMAFAGKPNFAVDGNSAKKDKSTTE-------DNYLRNHLKEK 106
Query: 249 PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVS 308
Q + I ++ + + F+ ++ N + D T +D
Sbjct: 107 SSSDQQILTEATIAERAAEWGVVVNTGNFR----AMGEENTGASFDGDRTRNL-SDRFAE 161
Query: 309 QVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIK 368
+ + NF D++S + ++++ L ++ + K I +
Sbjct: 162 STRTSGESNFGSDSTSGLFPRVSQELKEALATLQQTFVVSDATKPDCPIMYASSGFFSMT 221
>gi|320168159|gb|EFW45058.1| hypothetical protein CAOG_03064 [Capsaspora owczarzaki ATCC 30864]
Length = 2624
Score = 42.2 bits (97), Expect = 0.31, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 69/232 (29%), Gaps = 37/232 (15%)
Query: 57 YALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLK---YQYFARSY--------- 104
Y +AF +SDM+ A + IL S L P +L + L+ +K + A +Y
Sbjct: 1120 YGFRAFNMSDMTQARGLVSAIL-SRLDVPSALDDALSVVKAYHHLEEADAYVIRLQNLCP 1178
Query: 105 DFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLL 164
+ P + + + + H + + D LL
Sbjct: 1179 GWLPTDGATIEPSRLEQACVERSTAAARAIGSLTSSKTLCSVASHFLQWLHDTLDDNILL 1238
Query: 165 DYVLQSFSITPKYISLPFLKDVL------------TLGLANPKKYFIESRDNRFRAMAEN 212
+ + S L+ +L + P+ E D+R A+ +
Sbjct: 1239 QEYDKRARLAVMAYSQRVLEALLLQSQDLVLQSAVASACSGPQAAEQEVVDSRLVALRKQ 1298
Query: 213 FRFQPD------------GSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS 252
G ++ TD Q + IV+ F + +
Sbjct: 1299 LSMAIKRLPVCRELQTGFGEIAGLSDWQTDAQQQDIVARLFAAEMSDASLER 1350
>gi|151945114|gb|EDN63365.1| conserved protein [Saccharomyces cerevisiae YJM789]
Length = 604
Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 58/150 (38%), Gaps = 14/150 (9%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
P +D + L + V E +Y++ I + DE + D + AF + +
Sbjct: 385 LPKRDNLTTLTNKSRTLAFVERAESWYQQVIA---SKDEIMTD-------VPAFKI-NKR 433
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQ 128
+ K +L S + S N LN+ +Y ++ +F K D Q I + ++
Sbjct: 434 RSSSNSKTVLSSKVQTKSSNANALNNSRYLANSKE-NFMYKEK--MPDSQANLIDRLRER 490
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLF 158
+ ++ + +Y + K+ V +
Sbjct: 491 ERRSAALLSQRQKRYQQFLAMKMTQVFDIL 520
>gi|317132745|ref|YP_004092059.1| protein of unknown function DUF262 [Ethanoligenens harbinense
YUAN-3]
gi|315470724|gb|ADU27328.1| protein of unknown function DUF262 [Ethanoligenens harbinense
YUAN-3]
Length = 784
Score = 41.8 bits (96), Expect = 0.44, Method: Composition-based stats.
Identities = 47/341 (13%), Positives = 104/341 (30%), Gaps = 40/341 (11%)
Query: 64 LSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTII 123
L DM +++ F KK D++D + + L + ++ P + Q+ + I
Sbjct: 116 LDDMIYSKAFSKKSFNIDVADRGTCMQAL-------LQKDENYVPVNESSQNMLDRYQDI 168
Query: 124 QDYKQSHQHKEEVALEESKYFRK-NIHKINSVD-QLFKDRRLLDYVLQSFSITPKYISLP 181
+D +E+ E YF I K+ ++ D L S
Sbjct: 169 EDIFP-----DELKGEALPYFINWLIEKVLLLEIDTPSDDEAHTIFLTMNDRGLSLNSAE 223
Query: 182 FLKDVLTLGLANPKKY-FIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
+K + +A + + + + G ++ +D + + + Y
Sbjct: 224 MMKAYIIQQVAEADRIEVNRKWQDNINRIKNASSYDTSGMVNTQDVEFISIWLR---AKY 280
Query: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPK---LFKMLQLSLFPLNPEITADKFL 297
N+ D D++Y + L D + + ++ + P+ + L
Sbjct: 281 ANSMRDTKRGAKDEDY------------ELLGDKFHTWVRNNARTAMGLVKPKDYKEFVL 328
Query: 298 TLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLI 357
T M I ++K + +D Q ML + D + +
Sbjct: 329 TEMTRVTDIYLRMKGYGSKLTPGYEEVFYNANRDLTYQTMLAIAAIKNDDTDDIVQKKIQ 388
Query: 358 KDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
+ +D+ + + + L A+
Sbjct: 389 MTAKF-------VDDFATIRILNFKKVNWNTNKYLLFHAMQ 422
>gi|317051654|ref|YP_004112770.1| hypothetical protein Selin_1480 [Desulfurispirillum indicum S5]
gi|316946738|gb|ADU66214.1| hypothetical protein Selin_1480 [Desulfurispirillum indicum S5]
Length = 1041
Score = 41.4 bits (95), Expect = 0.55, Method: Composition-based stats.
Identities = 47/469 (10%), Positives = 110/469 (23%), Gaps = 76/469 (16%)
Query: 175 PKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAEN----FRFQPDGSLSKRDKILTD 230
K F++ + L A+ FR DG ++
Sbjct: 519 GKDFGQNFIQSDVAEALDKQGLLPNNIPGGNMAALGAAGGSTFRIAADGGVADGAINPDT 578
Query: 231 MQIEKIVSNYFNNTIDCVPIVS-------DQNYYKLAINSVSS-----FSDFLKDPKLFK 278
++ ++ D Y +++ + + + +
Sbjct: 579 SKLSTMMITKAGTENPDGTFTGVEKHGTPDLGYLQVSAGTATQQAARDTYQQMDQNQQAA 638
Query: 279 MLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKML 338
+ + F ++ +D Q + + + +T + + +
Sbjct: 639 ARAYTESTSTLDSQRQNFDETVRNSDVYSRQDREALAHVQAQQGTLATGLAKKISDSTGM 698
Query: 339 DLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD 398
D + P G I + L+ AL
Sbjct: 699 DYKDAQSIARALTASVTASASVGTPGGSISPV-------------------KAKLEAALK 739
Query: 399 AYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
A + LD + + L S SD S +F QS
Sbjct: 740 AEG---RSLDEETITRALNSLESDDWSKV------------RSF-----------QETQS 773
Query: 459 RLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFE 518
+ K ++ + A +S++ E N+ + + +
Sbjct: 774 QTYSGLAEKATSSSDENAIAAARGLVHSLDTQRQASEAFTESNTRLSAAGQVLERAET-- 831
Query: 519 ELLANKRILNFLLESKGID--SQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISS- 575
+ N L + +D Q + + + + A D ++
Sbjct: 832 ----DSTSRNSNLSAVVLDRLKQTYGDGAADTLLREANTSGNAAARAKVDEVAAQVAQQE 887
Query: 576 ------FNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKD 618
++ + D Y+++ E + D
Sbjct: 888 IKTEFDRTLGKKMADVQSTTANIEPPKSQAEVADGYENRNYESGVPKSD 936
>gi|241951716|ref|XP_002418580.1| D-lactaldehyde dehydrogenase, putative; NADPH-dependent
methylglyoxal reductase, putative [Candida dubliniensis
CD36]
gi|223641919|emb|CAX43883.1| D-lactaldehyde dehydrogenase, putative [Candida dubliniensis CD36]
Length = 348
Score = 41.4 bits (95), Expect = 0.55, Method: Composition-based stats.
Identities = 42/317 (13%), Positives = 104/317 (32%), Gaps = 20/317 (6%)
Query: 225 DKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
+ + + E++ + D ++ S +F L++ K + +
Sbjct: 32 GSVRSHTKGEQLKELITAHHQDSTGTAKFDYVIVESLTSFGAFDSILQNHKEISIFIHTA 91
Query: 285 FPLN---PEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQ----QDSQIQ-K 336
P+ I D + ++ +K + N R +S+ D Q + K
Sbjct: 92 SPIPFPTDNIERDILNPAIDGTKNVLQSIKKYGNDNIKRVVITSSIAAIKPFGDEQTELK 151
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFA 396
++ N +I Y + + + + + + + ++ F
Sbjct: 152 IISEKDWNPITFEQGLDNPIIAYYASKTLAEREVWKFIDEQSGNDNQINFKLAVVNPSFV 211
Query: 397 L--DAYNLNMQD----LDRDQLRNVLTSNPSDP-DSYANKSKDDRLIKLNHAFNFNADGS 449
A+ + + + + ++L +D S+ D R + H F + +
Sbjct: 212 FGPQAFGIKDKSAVLRSSAEIVNSILKLKSNDSIPSFVASFIDARDVAKAHILAFENNNT 271
Query: 450 IGPIPMMQSRLTIRDNVKHYANRK-RSIHDAENKSFNSMEQISTQKRINLEINSEV---- 504
IG ++ + + ++ + H + S+ E S EQI+ +E
Sbjct: 272 IGQRLLLNNEIFTKELIAHLIKKNFPSLDIPEGDVVKSEEQIANYPWRVDSTKTEKILGF 331
Query: 505 DYYTLNINTIHSFEELL 521
+Y L + I + +L+
Sbjct: 332 EYIPLEKSIIDTVNQLI 348
>gi|319440577|ref|ZP_07989733.1| peptidyl-dipeptidase [Corynebacterium variabile DSM 44702]
Length = 682
Score = 41.4 bits (95), Expect = 0.58, Method: Composition-based stats.
Identities = 36/266 (13%), Positives = 82/266 (30%), Gaps = 17/266 (6%)
Query: 97 YQYFARSYDFSPPPKVIQSDIQHKT----IIQDYKQSHQHKEEVALEESKYFRKNIHKIN 152
A + + ++ Q II +Y + E VA+EE+ +
Sbjct: 43 ITALADAPTWENTMDALELSGQMLQRVLAIIFNYAGTDATDEVVAVEETVAPELSA---- 98
Query: 153 SVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTL------GLANPKKYFIESRDNRF 206
++ +R L V + + L L L + + + D R
Sbjct: 99 HWTRILLNRDLYARVQAMPAQPEGSENEALLAHWLRTFRRGGADLDDAGREELSGIDTRL 158
Query: 207 RAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQN--YYKLAINSV 264
++ +F S + ++TD Q +S+ + ++ +L + SV
Sbjct: 159 AELSTSFGRNLMTSTADHAVLVTDEQRLAGLSSARKAQLREDAASEGEDGWLIRLGLPSV 218
Query: 265 SSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINF-HRDNS 323
+ L D L + + + +D L + + + +F + +
Sbjct: 219 QPILEDLADADLRREVSEASRARGAGNNSDIVLETARLRARRAELLGFGSHADFVAAEET 278
Query: 324 SSTKIQQDSQIQKMLDLYKKNCQILH 349
+ T D ++ + N +
Sbjct: 279 ARTVAAVDELLETVTPAAVDNAHGEY 304
>gi|171060409|ref|YP_001792758.1| outer membrane adhesin-like protein [Leptothrix cholodnii SP-6]
gi|170777854|gb|ACB35993.1| outer membrane adhesin like proteiin [Leptothrix cholodnii SP-6]
Length = 4231
Score = 41.4 bits (95), Expect = 0.64, Method: Composition-based stats.
Identities = 69/594 (11%), Positives = 161/594 (27%), Gaps = 72/594 (12%)
Query: 81 DLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEE 140
D+ D ++ L F+P + + + + +A +
Sbjct: 3211 DVGDTRAYTATLADG--SALPAWLSFNPATRTFSGTPANADVGTLSVKVTATDGALASAD 3268
Query: 141 SKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTL-GLANPKKYFI 199
F + +N L + + S DV + + + Y
Sbjct: 3269 DS-FDIVVANVNDA------PTLAHAIADQAATEDSAFSFTVPADVFADVDVGDTRAYTA 3321
Query: 200 ESRDNR-------FRAMAENFR---------------FQPDGSLSKRDKILTDMQIEKIV 237
D F A F DG+L+ D D+ + +
Sbjct: 3322 TLADGSALPAWLSFDATTRTFSGTPANGDVGTISVKVTATDGALASADDSF-DIVVANVN 3380
Query: 238 SNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFL 297
++ + + + + + + D + + L ++ D
Sbjct: 3381 DAPTLAHAIADQAATEDSAFSFTVPADAFADVDVGDSRSYAATLADGSALPAWLSFDA-A 3439
Query: 298 TLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQ-DSQIQKMLDLYKKNCQILHDDKMQSL 356
T P + V D + ++ D + + D I +
Sbjct: 3440 TRTFSGTPANADVGTLSVKVTATDGALASADDSFDIVVANVNDAPTLAHAIADQAATEDS 3499
Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIIT-LQFALDAYNLNMQDLDRDQLR-- 413
+ +P +D S + + P A ++ + D +
Sbjct: 3500 AFSFTVPADAFADVDVGDSRSYAATLADGSALPAWLSFDAATRTFSGTPANADVGTISVK 3559
Query: 414 ---------------NVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQS 458
+++ ++ +D + AN D + + AF+F + +
Sbjct: 3560 VTATDGSNAFADDSFDIVVADVNDAPAVANPIADQAATE-DSAFSFT------VPADVFA 3612
Query: 459 RLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFE 518
+ + D + A SFN + + N ++ + T + S +
Sbjct: 3613 DVDVGDTRSYVATLADGSALPAWLSFNPATRTFSGTPANADVGTISVKVTATDGSNASAD 3672
Query: 519 E----LLAN----KRILNFLLESKGIDSQKVREDFLCEIFKS-DLKDPKSFANTYKDNRY 569
+ ++A+ + N + + + + F D+ D +S+A T D
Sbjct: 3673 DSFDIVVADVNDAPAVANPIADQAATEDSPFSFTVPADAFADVDVGDTRSYAATLADGSA 3732
Query: 570 KEIISSFNFDI---HGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPN 620
SFN G ++ +G + F D + + + +
Sbjct: 3733 LPAWLSFNAATRTFSGTPANADVGTISVKFTATDGSNASADDTFDIVVADVNDA 3786
>gi|119486646|ref|ZP_01620696.1| hypothetical protein L8106_12885 [Lyngbya sp. PCC 8106]
gi|119456263|gb|EAW37395.1| hypothetical protein L8106_12885 [Lyngbya sp. PCC 8106]
Length = 1471
Score = 41.0 bits (94), Expect = 0.74, Method: Composition-based stats.
Identities = 45/333 (13%), Positives = 104/333 (31%), Gaps = 11/333 (3%)
Query: 72 KFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQ 131
I+ + +++ +DP +L Y + Q+ + + +Q Y+Q+
Sbjct: 394 GLIRSLGKNNSTDPNVEAERL----YNQGVELFGQGTAESKKQAIVALEKALQLYQQARN 449
Query: 132 HKEEVA--LEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTL 189
+ + L + + +K ++D + L V ++ + D L
Sbjct: 450 LQGQAISLLGLGRIYSDLGNKQTALDYYNQSLPLWRQVGDKAGEATILSNIGAVYDAL-G 508
Query: 190 GLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVP 249
Y+ +S R + + ++ L D Q +Y+N ++
Sbjct: 509 DSQQALNYYNQSLSLRQQVGDKALEANTLNNIGLVYNALGDRQ---TALDYYNQSLPLSR 565
Query: 250 IVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQEN-DPIVS 308
V D+ ++++ + D L D ++ PL+ ++ N +
Sbjct: 566 QVGDKAGEANTLSNIGAVYDALGDKQIALDFYNQSLPLSRQVGNKALEAATLNNIGAVYD 625
Query: 309 QVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIK 368
+ Q + S + Q + + L Q + + L +
Sbjct: 626 ALGDKQQALDFYNQSLPLRRQVGDKEGEANTLNNIGGVYYTLGDSQRALNYFNQSLSLTR 685
Query: 369 SIDNLLSGKCQLEGPNSAEEPIITLQFALDAYN 401
+ L S + + Q AL+ YN
Sbjct: 686 QVGIKAGVAATLNNIGSVYDDLGDSQQALEYYN 718
>gi|259147510|emb|CAY80762.1| Tah11p [Saccharomyces cerevisiae EC1118]
Length = 604
Score = 41.0 bits (94), Expect = 0.78, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 14/150 (9%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
P +D + L + V E +Y++ I + DE + D + AF + +
Sbjct: 385 LPKRDNLTTLTNKSRTLAFVERAESWYQQVIA---SKDEIMTD-------VPAFKI-NKR 433
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQ 128
+ K +L S + S N LN+ +Y ++ +F K D Q + + ++
Sbjct: 434 RSSSNSKTVLSSKVQAKSSNANALNNSRYLANSKE-NFMYKEK--MPDSQANLMDRLRER 490
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLF 158
+ ++ + +Y + K+ V +
Sbjct: 491 ERRSAALLSQRQKRYQQFLAMKMTQVFDIL 520
>gi|327273443|ref|XP_003221490.1| PREDICTED: protein piccolo-like [Anolis carolinensis]
Length = 5030
Score = 41.0 bits (94), Expect = 0.79, Method: Composition-based stats.
Identities = 50/426 (11%), Positives = 112/426 (26%), Gaps = 44/426 (10%)
Query: 15 QSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFI 74
Q+KL S D I + + Y +I ++ D+ KD +L L + D ++
Sbjct: 1031 QAKLAKIPSADHIQKGDSKLYETKIVKTASADQLPKDTKLQEVKLAKIPMDDSLSSKAMS 1090
Query: 75 KKI-LESDLSDPKSLVNQL-------NSLKYQYFA--RSYDFSPPPKVIQSDIQHKTIIQ 124
+ L D + L + K F ++ Q +I+ + +I
Sbjct: 1091 DQAQLIKREEDDTKFSHSLESLHLSESKPKVAQFTGDKAEPKGLTETRRQEEIKREDLII 1150
Query: 125 DYKQSHQHKEEVALEESKYFRKNIHKINSVDQLF---------KDRRLLDYVLQSFSITP 175
++ ++ EE + K + V+ + D ++
Sbjct: 1151 GIPETISKDQKYPKEEISSPTVPLPKPDHVEAIREKAEKEDDKSDTSSSQQQKSPQGLSD 1210
Query: 176 KYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEK 235
S + L + + E ++ A S +D+ +
Sbjct: 1211 TGYSSDGISGSLGEIPSLIQSEEKEMLKESYKKEAI--------SQESSPTSPSDLAKLE 1262
Query: 236 IVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADK 295
+ S QL + + + D
Sbjct: 1263 STVLSILEAQASTLVEQKSG----KTKGSYSVYSEPSRDPHKTKTQLVISEPHSVVEEDF 1318
Query: 296 FLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQS 355
+Q D + Q + + + + + + ++
Sbjct: 1319 VKQNLQGKDRGPPEEGSKPQKGYKE---------KADPTEDTPTRRQCYDSVEDSSESEN 1369
Query: 356 LIKDYQLPLGKI--KSIDNLLSGKCQLEGPNSA--EEPIITLQFALDAYNLNMQDLDRDQ 411
+ + S D+ G + I+ + DA + R+Q
Sbjct: 1370 SPVPRRKRRTSVGSSSSDDYKPEDSPGSGDEEEFIRKQIMVMSADEDASGSEDDEFIRNQ 1429
Query: 412 LRNVLT 417
L+ + T
Sbjct: 1430 LKEIST 1435
>gi|68536900|ref|YP_251605.1| putative iron utilization protein [Corynebacterium jeikeium K411]
gi|68264499|emb|CAI37987.1| putative iron utilization protein [Corynebacterium jeikeium K411]
Length = 685
Score = 41.0 bits (94), Expect = 0.81, Method: Composition-based stats.
Identities = 28/268 (10%), Positives = 79/268 (29%), Gaps = 24/268 (8%)
Query: 13 DIQSKLFSTVSKDPIVSCEERYYRERIKHIS---------TIDEFIKDKRLFSYALKAFG 63
D +L + ++ Y E + ++ + ++ + D+R L A G
Sbjct: 334 DRVDQLAAATGLQQELALRIARYLEAVGLVTLSADAALDSSAED-VADQRAVRIGLTALG 392
Query: 64 LSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTII 123
S++++ + ++ + + + + QL + + + I+
Sbjct: 393 -SELANPDSPVRDWITGPAAAKTAALGQLGQ------------ALQNPADTGEHRWDYIV 439
Query: 124 QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFL 183
Q Q + E A +++ +I S +L + + L
Sbjct: 440 QTQPQLAVEEHEQAASSAQWSAPAAAEILSS-KLLARQDAGSLRCAVGGPAAAVYADEIL 498
Query: 184 KDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNN 243
+ + + D R A G+ ++ + + + Y
Sbjct: 499 RKMPQANAVVLGSFSEAEDDARISVGATTAAMTEPGASAEEVMLHDIAPRRRDRARYSAL 558
Query: 244 TIDCVPIVSDQNYYKLAINSVSSFSDFL 271
V + + +V++ + +
Sbjct: 559 HAPTVGRSGEDVHRADWAGTVATLCEQV 586
>gi|190409523|gb|EDV12788.1| hypothetical protein SCRG_03698 [Saccharomyces cerevisiae RM11-1a]
gi|256270800|gb|EEU05951.1| Tah11p [Saccharomyces cerevisiae JAY291]
Length = 604
Score = 41.0 bits (94), Expect = 0.84, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 14/150 (9%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
P +D + L + V E +Y++ I + DE + D + AF + +
Sbjct: 385 LPKRDNLTTLTNKSRTLAFVERAESWYQQVIA---SKDEIMTD-------VPAFKI-NKR 433
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQ 128
+ K +L S + S N LN+ +Y ++ +F K D Q + + ++
Sbjct: 434 RSSSNSKTVLSSKVQTKSSNANALNNSRYLANSKE-NFMYKEK--MPDSQANLMDRLRER 490
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLF 158
+ ++ + +Y + K+ V +
Sbjct: 491 ERRSAALLSQRQKRYQQFLAMKMTQVFDIL 520
>gi|6322506|ref|NP_012580.1| Tah11p [Saccharomyces cerevisiae S288c]
gi|1352882|sp|P47112|YJ16_YEAST RecName: Full=Uncharacterized protein YJR046W
gi|1015703|emb|CAA89574.1| unnamed protein product [Saccharomyces cerevisiae]
gi|1197074|gb|AAA88748.1| ORF; putative [Saccharomyces cerevisiae]
gi|285812935|tpg|DAA08833.1| TPA: Tah11p [Saccharomyces cerevisiae S288c]
Length = 604
Score = 41.0 bits (94), Expect = 0.85, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 14/150 (9%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
P +D + L + V E +Y++ I + DE + D + AF + +
Sbjct: 385 LPKRDNLTTLTNKSRTLAFVERAESWYQQVIA---SKDEIMTD-------VPAFKI-NKR 433
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQ 128
+ K +L S + S N LN+ +Y ++ +F K D Q + + ++
Sbjct: 434 RSSSNSKTVLSSKVQTKSSNANALNNSRYLANSKE-NFMYKEK--MPDSQANLMDRLRER 490
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLF 158
+ ++ + +Y + K+ V +
Sbjct: 491 ERRSAALLSQRQKRYQQFLAMKMTQVFDIL 520
>gi|323347854|gb|EGA82115.1| Tah11p [Saccharomyces cerevisiae Lalvin QA23]
Length = 604
Score = 41.0 bits (94), Expect = 0.86, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 14/150 (9%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
P +D + L + V E +Y++ I + DE + D + AF + +
Sbjct: 385 LPKRDNLTTLTNKSRTLAFVERAESWYQQVIA---SKDEIMTD-------VPAFKI-NKR 433
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQ 128
+ K +L S + S N LN+ +Y ++ +F K D Q + + ++
Sbjct: 434 RSSSNSKTVLSSKVQXKSSNANALNNSRYLANSKE-NFMYKEK--MPDSQANLMDRLRER 490
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLF 158
+ ++ + +Y + K+ V +
Sbjct: 491 ERRSAALLSQRQKRYQQFLAMKMTQVFDIL 520
>gi|323354242|gb|EGA86085.1| Tah11p [Saccharomyces cerevisiae VL3]
Length = 604
Score = 40.6 bits (93), Expect = 0.88, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 14/150 (9%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
P +D + L + V E +Y++ I + DE + D + AF + +
Sbjct: 385 LPKRDNLTTLTNKSRTLAFVERAESWYQQVIA---SKDEIMTD-------VPAFKI-NKR 433
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQ 128
+ K +L S + S N LN+ +Y ++ +F K D Q + + ++
Sbjct: 434 RSSSNSKTVLSSKVQTKSSNANALNNSRYLANSKE-NFMYKEK--MPDSQANLMDRLRER 490
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLF 158
+ ++ + +Y + K+ V +
Sbjct: 491 ERRSAALLSQRQKRYQQFLAMKMTQVFDIL 520
>gi|298710741|emb|CBJ32162.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1778
Score = 40.6 bits (93), Expect = 0.88, Method: Composition-based stats.
Identities = 75/630 (11%), Positives = 156/630 (24%), Gaps = 85/630 (13%)
Query: 7 APFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSD 66
A + DI+S V D ++ Y I D+ + R +S AF
Sbjct: 371 ADYDLADIRSYSGDKVFADDRLAYTRAYSGANI----VADDGLTHTRFYS-GTNAFTDGG 425
Query: 67 MSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDY 126
+++ + P + + + ++ +Y F D
Sbjct: 426 LAYTRAY---------YGPNAFADD-GISYTRAYSGAYSFPDNGLASTRAYFGANAFADD 475
Query: 127 KQSHQHK---EEVALEESKYFRKNIHKINSV-DQLFKDRRLLDYVLQSFSITPKYISLPF 182
+ V ++ + + N V D R+ +F+ + +
Sbjct: 476 DLADIRAHSGANVFADDRLAYTRAYSGANIVADDGLAHTRVYS-GTAAFTDDGLAYTRAY 534
Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFN 242
+ R A F D +S Y
Sbjct: 535 SGTNIVADDG--------LAYTRTYPGANAF---ADDGVSYTRAYSGANAFANDGLAYTR 583
Query: 243 NTIDCVPIVSDQNYYKLAINS------VSSFSDFLKDPKLFKMLQLSLFPLNPEITADKF 296
+ D Y I S +D + + L +
Sbjct: 584 TYLGTNAFADDGLAYTSMIAKPLAYRAAFSGADAVANDGLA--------------YTRAY 629
Query: 297 LTLMQENDPIVSQVKYFFQIN-FHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQS 355
D ++ ++ + N F D + T++ + I +
Sbjct: 630 SGAHAFADDGLAYIRVYSGANAFTDDGIACTRVNTGANIFADDGVVYTRAYSGASAFADD 689
Query: 356 LIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALD---AYNLNMQDLDRDQL 412
+ + G DN L+ G N+ + + A A+ + R
Sbjct: 690 GVSYTRAYYGANAFTDNGLANTRAYSGANTFTDDGLAYTRAYSGANAFAHDDNAYTRVY- 748
Query: 413 RNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANR 472
S AN DD L F +A G + +
Sbjct: 749 ------------SGANAFADDHLAYTRAYFRVHAFADDGLAYNSRVYSGVNAFADDGLAY 796
Query: 473 KRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLE 532
R+ + + + + N + + Y ++ LA R+ +
Sbjct: 797 IRAYYGPHVFADDGIVSTRAYFGTNAFADGGLAYTRAYSGANTFADDRLAYTRVY-YGPH 855
Query: 533 SKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKV 592
D + S AN + D+R + + + ++ +I
Sbjct: 856 VFADDRLAYARAY-------------SGANAFADDR---LANIRAYSGPNAVADFRINHA 899
Query: 593 QDNFHIDDTCDLYKHQMIEKKEEEKDPNIA 622
+ + + E +P++A
Sbjct: 900 RQQGFRPFVIPPTETPIPSTTSPEVNPSVA 929
>gi|254787875|ref|YP_003075304.1| glycoside hydrolase family 9 domain-containing protein
[Teredinibacter turnerae T7901]
gi|237687015|gb|ACR14279.1| glycoside hydrolase family 9 domain protein [Teredinibacter
turnerae T7901]
Length = 860
Score = 40.6 bits (93), Expect = 0.91, Method: Composition-based stats.
Identities = 44/385 (11%), Positives = 113/385 (29%), Gaps = 35/385 (9%)
Query: 175 PKYISLPFLKDVLTLGLANPK--KYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQ 232
+ S + T G +P Y D++ A N+ G+ + +
Sbjct: 243 KQLFSFAYQTKDFTHGGNDPAPGSYTNSLVDDQGNNYAMNYYNASSGAKDEIPWAAGWLY 302
Query: 233 IEKIVSNYFNNTIDC-VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEI 291
+ ++Y + I + ++ S+ D + +
Sbjct: 303 LATGDADYLHKAEAGYNDIAGNTGHFAWY----PSWD----DTRNAVYYLMEKVAATSGY 354
Query: 292 TADKFLTLMQENDPIVSQVKYFFQI--------NFHRDNS---SSTKIQQDSQIQKMLDL 340
AD ++ Q D + N+ + + + M+ L
Sbjct: 355 AADTLISDSQRIDGYYDYEAHCTNYLNELLHNKNYTPGGMIYLDGFASARATAMASMVAL 414
Query: 341 YKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAY 400
+N + + + ++ I L L + ++
Sbjct: 415 VHRNYLVQQSKQADFQSELADFATNQMNYI--LGDNPNNLSYMVGFGDSWQLAAHHRSSH 472
Query: 401 N-----LNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPM 455
+N ++ R+ L + P+D DSY++ D + ++ N G++ +
Sbjct: 473 GSSRNDINDPEIPRNILFGAIAGGPADDDSYSSDRADFPMTEVATDMNAGLTGALAGLVD 532
Query: 456 MQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIH 515
+ + + D + S + + +N+++ +E ++ I +
Sbjct: 533 IHGGMPLADFPPAVDTSIPEAFVKAKVGYPSGDDRQSGALLNIQMINESNFPPKEIADVS 592
Query: 516 ------SFEELLANKRILNFLLESK 534
+E++A N +L +
Sbjct: 593 FRYFLDLSDEIIAGYDPANLVLSAY 617
>gi|87201005|ref|YP_498262.1| hypothetical protein Saro_2993 [Novosphingobium aromaticivorans DSM
12444]
gi|87136686|gb|ABD27428.1| hypothetical protein Saro_2993 [Novosphingobium aromaticivorans DSM
12444]
Length = 961
Score = 40.6 bits (93), Expect = 0.93, Method: Composition-based stats.
Identities = 33/255 (12%), Positives = 74/255 (29%), Gaps = 21/255 (8%)
Query: 271 LKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQ 330
L DP + L T + D + + + S ++Q
Sbjct: 29 LPDPDKQADNARADQGLKNSTTQTDIAVRGEGRDVVKDAINNLTSLQ-----SRYEQLQP 83
Query: 331 DSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPI 390
+ + +L + + Q+ D + + + S+ + Q N A
Sbjct: 84 VKEYRVVLPQFMQALQLPDDPTADNTLLYAYAKIMDPGSV---VRESEQGAAANGANYWD 140
Query: 391 ITLQFALDAYNLNMQDLD--RDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADG 448
++ + + R +L+ + + + + +R K FN +
Sbjct: 141 RAVEAVKKQFGVGGNLTPEVRARLKRDIETRVQ-AMGKVYRLQRERYAKTAEKFNIDPAD 199
Query: 449 SIGP----------IPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINL 498
IGP + Q + Y R DA + F+ E + +
Sbjct: 200 VIGPDDFDPFRADWERLTQGKANQPTTQDIYGGGVRFNMDAPERPFDRAEYLRSMGIPPE 259
Query: 499 EINSEVDYYTLNINT 513
+ + + ++T N
Sbjct: 260 KEDQIIGFWTANSGN 274
>gi|323332857|gb|EGA74260.1| Tah11p [Saccharomyces cerevisiae AWRI796]
Length = 298
Score = 40.2 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 14/150 (9%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
P +D + L + V E +Y++ I + DE + D + AF + +
Sbjct: 143 LPKRDNLTTLTNKSRTLAFVERAESWYQQVIA---SKDEIMTD-------VPAFKI-NKR 191
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQ 128
+ K +L S + S N LN+ +Y ++ +F K D Q + + ++
Sbjct: 192 RSSSNSKTVLSSKVQTKSSNANALNNSRYLANSKE-NFMYKEK--MPDSQANLMDRLRER 248
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLF 158
+ ++ + +Y + K+ V +
Sbjct: 249 ERRSAALLSQRQKRYQQFLAMKMTQVFDIL 278
>gi|303253666|ref|ZP_07339804.1| prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|307248077|ref|ZP_07530106.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 2
str. S1536]
gi|302647586|gb|EFL77804.1| prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|306855475|gb|EFM87649.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 2
str. S1536]
Length = 385
Score = 40.2 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 67/169 (39%), Gaps = 9/169 (5%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL-LESKGIDSQKVREDFLCE 548
++ + R+ ++ + + I +ELL + +++ E+ +D Q V + F
Sbjct: 23 LAERHRLAFDVVRSKEITQKPLRDIEREKELL--QALVSHAEAENYQLDPQYVTQIFQRI 80
Query: 549 IFKSDLKDPKSFANTYKDNRYKEIISSF--NFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
I S L N + + + I +F + ++ ++ K I+ +CD ++
Sbjct: 81 IEDSVLTQQNYLQNKLNEQKEQNISIAFLGMRGSYSNMASRQFAKKYQGSLIELSCDSFQ 140
Query: 607 HQMIEKKEEEKDPNIALALYFKR-TIPNIRNHYEILGDSKLFKVVSKKL 654
+ E E + + L + T +I + Y++L + L V
Sbjct: 141 QVFDKVSEGEAEFGV---LPLENTTSGSINDVYDLLQHTDLAVVGELAY 186
>gi|190150358|ref|YP_001968883.1| P-protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|307263701|ref|ZP_07545309.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 13
str. N273]
gi|189915489|gb|ACE61741.1| P-protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|306870955|gb|EFN02691.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 13
str. N273]
Length = 385
Score = 39.9 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 67/169 (39%), Gaps = 9/169 (5%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL-LESKGIDSQKVREDFLCE 548
++ + R+ ++ + + I +ELL + +++ E+ +D Q V + F
Sbjct: 23 LAERHRLAFDVVRSKEITQKPLRDIEREKELL--QALVSHAEAENYQLDPQYVTQIFQRI 80
Query: 549 IFKSDLKDPKSFANTYKDNRYKEIISSF--NFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
I S L N + + + I +F + ++ ++ K I+ +CD ++
Sbjct: 81 IEDSVLTQQNYLQNKLNEQKEQNISIAFLGMRGSYSNMASRQFAKKYQGSLIELSCDSFQ 140
Query: 607 HQMIEKKEEEKDPNIALALYFKR-TIPNIRNHYEILGDSKLFKVVSKKL 654
+ E E + + L + T +I + Y++L + L V
Sbjct: 141 QVFDKVSEGEAEFGV---LPLENTTSGSINDVYDLLQHTDLAVVGELAY 186
>gi|303251034|ref|ZP_07337220.1| prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|307252671|ref|ZP_07534563.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|302650044|gb|EFL80214.1| prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|306859847|gb|EFM91868.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
Length = 385
Score = 39.9 bits (91), Expect = 1.6, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 67/169 (39%), Gaps = 9/169 (5%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL-LESKGIDSQKVREDFLCE 548
++ + R+ ++ + + I +ELL + +++ E+ +D Q V + F
Sbjct: 23 LAERHRLAFDVVRSKEITQKPLRDIEREKELL--QALVSHAEAENYQLDPQYVTQIFQRI 80
Query: 549 IFKSDLKDPKSFANTYKDNRYKEIISSF--NFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
I S L N + + + I +F + ++ ++ K I+ +CD ++
Sbjct: 81 IEDSVLTQQNYLQNKLNEQKEQNISIAFLGMRGSYSNMASRQFAKKYQGSLIELSCDSFQ 140
Query: 607 HQMIEKKEEEKDPNIALALYFKR-TIPNIRNHYEILGDSKLFKVVSKKL 654
+ E E + + L + T +I + Y++L + L V
Sbjct: 141 QVFDKVSEGEAEFGV---LPLENTTSGSINDVYDLLQHTDLAVVGELAY 186
>gi|166033201|ref|ZP_02236030.1| hypothetical protein DORFOR_02926 [Dorea formicigenerans ATCC
27755]
gi|166027558|gb|EDR46315.1| hypothetical protein DORFOR_02926 [Dorea formicigenerans ATCC
27755]
Length = 727
Score = 39.9 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 38/315 (12%), Positives = 97/315 (30%), Gaps = 11/315 (3%)
Query: 85 PKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHK------EEVAL 138
++ ++ + + + V Q+ ++ ++ + +
Sbjct: 143 ENAIAPKVTVKGANAVQQQINDTFVQTVSQTALEAFQLVNNVADETDDQTIADNLSAALA 202
Query: 139 EESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLK--DVLTLGLANPKK 196
+ S + + + ++ F + + V G+ +
Sbjct: 203 QISTDLSSAAGTVQAFSDMANSAAIMLNTTTEFLSQSGSGTKASVNALGVAGNGIDSLNS 262
Query: 197 YFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNY 256
+ D+ +A++++ F S + + + + +N N V + D
Sbjct: 263 ALTGTTDSINQALSQSASFYSAVSTCVGNALDSYNSDAQACANALNAVSGRVQNLIDG-- 320
Query: 257 YKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQI 316
Y+ NS+S +D + +P L ML ++ + + + + ND
Sbjct: 321 YQSLENSLSQIADSITEPNLKGMLMQAIGNIQKAKASQEAIRDAI-NDAATGITSATANA 379
Query: 317 NFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSG 376
++N Q +S I + Y+ N + DD L + +DN L
Sbjct: 380 TELKNNIDGLIAQSNSSISTVKKDYENNVKGSLDDLANDLTSTGSSITSLLGQLDNSLKD 439
Query: 377 KCQLEGPNSAEEPII 391
+ G + +
Sbjct: 440 ISGVTGSAAGNLTEV 454
>gi|282165466|ref|YP_003357851.1| hypothetical protein MCP_2796 [Methanocella paludicola SANAE]
gi|282157780|dbj|BAI62868.1| hypothetical protein [Methanocella paludicola SANAE]
Length = 930
Score = 39.5 bits (90), Expect = 2.3, Method: Composition-based stats.
Identities = 51/345 (14%), Positives = 105/345 (30%), Gaps = 44/345 (12%)
Query: 58 ALKAFGLSDMSHAEKFIKKILESDLSDPKSLVN-QLNSLKYQYF-------ARSYDFSPP 109
A+ A S + F ILE L +P VN L++ + + + P
Sbjct: 471 AIGALTFSPGEFTKSFKVPILEDSLYEPDETVNLTLSAPTGGAIIGTPGSAVLTINDNDP 530
Query: 110 PKVIQSDIQHKTIIQDYKQ---SHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDY 166
V+ + +D + + + S + + L +
Sbjct: 531 APVVYFSSSTYGVDEDGGVVAITVSRANDAEGQVSVDYATSDGTATQGKDYTAASGTLTF 590
Query: 167 VLQSFS-------------ITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENF 213
FS + ++L G+ P + RD+R +A
Sbjct: 591 SKGEFSKSFEVRILDDGLYEPDETVNLALSNAAGGAGIGTPGSAVLTIRDDRGNDLAPVI 650
Query: 214 RF-------QPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSS 266
+F DG ++ + I +Y +P D++Y++ + +++
Sbjct: 651 QFSMSEYFVSEDGHIATITATRVNDAQNPITVSYTTKPGTAIP---DEDYFETS-GTLTF 706
Query: 267 FSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSST 326
+ K F + L+ P + D L+ + Q I DN +
Sbjct: 707 SQGEMS--KTFDVTILNDADAEPTESVDLELSAPTGGAVLGEQKTAVLNI---LDNDQND 761
Query: 327 KIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSID 371
+ Q++K +L L +D + + + + S D
Sbjct: 762 QQSFTIQLKKGWNLISF---PLVNDSVW-ASQFTGTAISTVLSYD 802
>gi|207343865|gb|EDZ71193.1| YJR046Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 294
Score = 39.5 bits (90), Expect = 2.3, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 58/150 (38%), Gaps = 14/150 (9%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
P +D + L + V E +Y++ I + DE + D + AF + +
Sbjct: 75 LPKRDNLTTLTNKSRTLAFVERAESWYQQVIA---SKDEIMTD-------VPAFKI-NKR 123
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQ 128
+ K +L S + S N LN+ +Y ++ +F K D Q + + ++
Sbjct: 124 RSSSNSKTVLSSKVQTKSSNANALNNSRYLANSKE-NFMYKEK--MPDSQANLMDRLRER 180
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLF 158
+ ++ + +Y + K+ V +
Sbjct: 181 ERRSAALLSQRQKRYQQFLAMKMTQVFDIL 210
>gi|291455903|ref|ZP_06595293.1| hypothetical membrane protein [Bifidobacterium breve DSM 20213]
gi|291382312|gb|EFE89830.1| hypothetical membrane protein [Bifidobacterium breve DSM 20213]
Length = 720
Score = 39.5 bits (90), Expect = 2.4, Method: Composition-based stats.
Identities = 43/378 (11%), Positives = 107/378 (28%), Gaps = 29/378 (7%)
Query: 73 FIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQH 132
F K I + L SL +QL++ + +++ + Q + + +
Sbjct: 166 FAKTITSAGLEIASSLADQLSTPAVKEQLNTFNTNIAGFATQLESTADLLGTYGSLTDSA 225
Query: 133 KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLA 192
+ + + + L ++ + V + S T + +S L
Sbjct: 226 GALLDTANALITQASSAAQQGSTDLKGAKQGVSDVAGALSTTTEAMSNA---------LD 276
Query: 193 NPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVS 252
F D+ + A+ + + + + K + Y ++
Sbjct: 277 TSASSFGAVSDSIDKLYADA---NSGATTTADELEHQATAVGKQTAQYTEIRNTLAGLLG 333
Query: 253 DQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKY 312
D + A++ + +L + L + + + ++ +Q
Sbjct: 334 DDSSIVKALDR-----SITRQTRLQQALNTTASDIRQGNQDAQNQRAQVKDLAKQAQNSI 388
Query: 313 FFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDN 372
+ D +S+ + Q +S + D D + + L S +
Sbjct: 389 A---SITADYASNVQPQIESLSATVADA------SSVLDTSAAKLNTTLGDLRSTSSDAD 439
Query: 373 LLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKD 432
+ A + + L+ + V +DP++ A+
Sbjct: 440 SMLADAHATLDKVANKLRSASSELTSFNGKLSEALNSGDMSMVKEVLGNDPETLASTLAA 499
Query: 433 DRLIKLNHAF---NFNAD 447
+K F NF +
Sbjct: 500 PVQLKRKAVFPVANFGSS 517
>gi|154294181|ref|XP_001547533.1| hypothetical protein BC1G_13981 [Botryotinia fuckeliana B05.10]
gi|150845028|gb|EDN20221.1| hypothetical protein BC1G_13981 [Botryotinia fuckeliana B05.10]
Length = 1146
Score = 39.5 bits (90), Expect = 2.4, Method: Composition-based stats.
Identities = 86/646 (13%), Positives = 200/646 (30%), Gaps = 86/646 (13%)
Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQ--LFKDRRLLDYVLQSFSITPKYI 178
I +Q+ + + + ++ S+ + D + + ++P
Sbjct: 117 NAIGHLQQAFTSTNDDVKVVNHNVIAGLGRMESIYDKAVLISNHTKDLIKEFKPVSPDLS 176
Query: 179 SLPFLKDVLTLGLANPKKYF-----IESRDNRFRAMAENFRFQPDGSLSKRDKILTD--- 230
S L++ + L+N KK +S N + +LS+ + +
Sbjct: 177 SQKSLRENIDDTLSNTKKLITDMAGNKSFFNTIIETNREVNYTNTKTLSESINHVAENIE 236
Query: 231 ------MQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKD--PKLFKMLQL 282
+I N +V D + S+ + + + D L L +
Sbjct: 237 KINDILPKIFTQTEATGNIFPKIQSLVIDNKVMSEKLPSLFTNTTIISDSIKDLHIKLGV 296
Query: 283 SLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYK 342
+ + D L + D I + K F D S +++ I +
Sbjct: 297 VQGNVGKQFG-DFLKNLEGKIDGIPAATKTKF------DPSLDDLVKKVDDISDSANTKF 349
Query: 343 KNCQILHDDKMQSLIKDYQLPLGK-----IKSIDNLLSGKCQLEGPNSAEEPIITLQFAL 397
K+ + + ++ + K K +D+ + + E + E + A+
Sbjct: 350 NISIEAMTKKVDDMPQTTKIEMDKFFQVLTKKLDD-IPQTTKNELHTNFEALKEQVDHAM 408
Query: 398 DAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQ 457
N+ + + + + + K KL+ FN+ A + IP
Sbjct: 409 KNTNIELDNSSNVLTKKI--EDI----------KQGTKTKLDECFNYLAK-KVDEIPQ-- 453
Query: 458 SRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSF 517
N K S+ + ME+I + + + + +
Sbjct: 454 -------------NTKTSLDSSFEAFTKKMEEIPLEFKSSFDATK------------KNI 488
Query: 518 EELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFN 577
++ +N R ES + V IF+ + + + NT D +
Sbjct: 489 DDFPSNLR--KEFDESFDLVQITVDRF--PGIFRKEFDESFAVLNTAMDG----FPDAMK 540
Query: 578 FDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNH 637
+I + + + D + + L F +I ++
Sbjct: 541 KNIDSIPGILRKEFDEYFAVLKTAMDGFPDATKNNVDGITS---GLRQEFDDSIGELKTV 597
Query: 638 YEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAM 697
+ D+ + + + L + K + K F++ +E+ +++
Sbjct: 598 IDQFPDT-VKTIFKELLDAVQQKFKQNDLKAEELRKLREDYAKFQN--HIEELTSNVQSL 654
Query: 698 DH-QSIDYKKALFSSPNQNKDPWNNSFDDPQNNVSLQLSPQKKSNG 742
S DY ++ + ++ + +NNSF+D N ++L + + +G
Sbjct: 655 VPITSEDYNTSITEAFDKFQKSFNNSFNDQSNQINLANTKEAYESG 700
>gi|323304244|gb|EGA58018.1| Tah11p [Saccharomyces cerevisiae FostersB]
Length = 604
Score = 39.1 bits (89), Expect = 2.8, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 14/150 (9%)
Query: 9 FPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMS 68
P +D + L + V E +Y++ I + DE + D + AF + +
Sbjct: 385 LPKRDNLTTLTNKSRTLAFVERAESWYQQVIA---SKDEIMTD-------VPAFKI-NKR 433
Query: 69 HAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQ 128
+ K +L S + S N LN+ +Y ++ +F K D Q + ++
Sbjct: 434 RSSSNSKTVLSSKVQTKSSNANALNNSRYLANSKE-NFMYKEK--MPDSQANLXDRLRER 490
Query: 129 SHQHKEEVALEESKYFRKNIHKINSVDQLF 158
+ ++ + +Y + K+ V +
Sbjct: 491 ERRSAALLSQRQKRYQQFLAMKMTQVFDIL 520
>gi|208434825|ref|YP_002266491.1| vacuolating cytotoxin (VacA)-like protein [Helicobacter pylori G27]
gi|208432754|gb|ACI27625.1| vacuolating cytotoxin (VacA)-like protein [Helicobacter pylori G27]
Length = 2506
Score = 39.1 bits (89), Expect = 2.8, Method: Composition-based stats.
Identities = 42/323 (13%), Positives = 95/323 (29%), Gaps = 34/323 (10%)
Query: 308 SQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKI 367
+ + + + + QD +Q+ + Q L DD Q K YQ L
Sbjct: 379 DKAISHVGVGNNTYDVTFDINGQDETLQETFNKQSIITQFLGDDLQQQAQKTYQEDLTHS 438
Query: 368 KSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYA 427
++ N ++ + +++ A DA L + Q L + + A
Sbjct: 439 QNALNNVTSDNTIANNDTSYTQSKNATIAKDAQGLENTNQKIAQDEQALEKDLAQIKQLA 498
Query: 428 NKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSM 487
N + F+ Q N + N ++ + +
Sbjct: 499 NSTT-----------GFSEQAFTQAQKQEQQDEQTLQNEEKTFNSEQEGLKQAIQQAQAQ 547
Query: 488 EQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILN------FLLESKGIDSQKV 541
+Q Q++ ++ +N S ++ + +++ +++
Sbjct: 548 QQKQEQQQAQQTYQQDLSNSQSALNNAASDSKIANSDTDYTKNKNTAIATDAQNLENTNQ 607
Query: 542 REDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDT 601
+ + + DL K AN + E +FN + Q D+
Sbjct: 608 QIAQDEQALEKDLAQIKQLAN--STTGFSE--QAFN-------------QAQSTEQQDEQ 650
Query: 602 CDLYKHQMIEKKEEEKDPNIALA 624
+ + ++E +A A
Sbjct: 651 TLQNEEKTFNAEQEGLKQALANA 673
>gi|308809017|ref|XP_003081818.1| Myosin class II heavy chain (ISS) [Ostreococcus tauri]
gi|116060285|emb|CAL55621.1| Myosin class II heavy chain (ISS) [Ostreococcus tauri]
Length = 5463
Score = 39.1 bits (89), Expect = 2.9, Method: Composition-based stats.
Identities = 75/657 (11%), Positives = 208/657 (31%), Gaps = 56/657 (8%)
Query: 83 SDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALE-ES 141
S+ +LV++L+ L+ A S DF +++ + + + S Q + + ALE E
Sbjct: 4433 SELDALVSKLHELEEVQVASSSDFDAQRATLEAQLAARDADLERVLSDQAERQSALESER 4492
Query: 142 KYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIES 201
R + ++ V + + S + + L+ + +
Sbjct: 4493 DGLRAELAELERVR--------AELIESQASGESRSARIAELESERASLQSELDALVSKL 4544
Query: 202 RDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAI 261
+ +A + F + + D +E+++S + + S+++ + +
Sbjct: 4545 HELEEVQVASSSDFDAQRATLEAQLAARDADLERVLS---DQAERQSALESERDGLRAEL 4601
Query: 262 NSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRD 321
+ L + + + + A +L E D +VS++ ++
Sbjct: 4602 AELERVRAELIESQASGESRSARIAELESERA----SLQSELDALVSKLHELEEVQVASS 4657
Query: 322 NSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLE 381
+ D+Q + D ++ ++ D ++S + L +
Sbjct: 4658 SDF------DAQRATLEAQLAAR-----DADLERVLSDQAERQSALESERDGLRAELAEL 4706
Query: 382 GPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHA 441
AE + + + +R L++ L D+ +K + +++ +
Sbjct: 4707 ERVRAELIESQASGESRSARIAELESERASLQSEL-------DALVSKLHELEEVQVASS 4759
Query: 442 FNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEIN 501
+F+A + + + + A R+ ++ + ++ + + +
Sbjct: 4760 SDFDAQRATLEAQLAARDADLERVLSDQAERQSALESERDGLRAELDVLLCKLDRHELAE 4819
Query: 502 SEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFA 561
+ + I + L + +DS +V +F+
Sbjct: 4820 AAQLSTGSDAEHIALLSQ-LKDAE--------FELDSMRVALANDRVVFE---------- 4860
Query: 562 NTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNI 621
+++ + EI + E + K +D L Q +E K + D +
Sbjct: 4861 -AERNSLHAEIDRLLEVETKSEQALKTAEVARDQALATVETLLRTQQELEDKLRDSDSAL 4919
Query: 622 ALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKKHIKINDF 681
AL R + + Y++ D ++ + + + ++L+ +
Sbjct: 4920 DEALADMRALQTEKQRYQLDVDLARSELTRSRQDVDAEQVARLHDQVSKLLEDKSSLEAA 4979
Query: 682 --KDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWNNSFDDPQNNVSLQLSP 736
++E + ++ ++ L + P+++ + P
Sbjct: 4980 LRARDIELEQERGKQDELTKENSKLREELLEAKELADHYMLQYSSGPESSARFDVLP 5036
>gi|26554057|ref|NP_757991.1| integral membrane protein [Mycoplasma penetrans HF-2]
gi|26454065|dbj|BAC44395.1| predicted integral membrane protein [Mycoplasma penetrans HF-2]
Length = 634
Score = 39.1 bits (89), Expect = 2.9, Method: Composition-based stats.
Identities = 54/345 (15%), Positives = 109/345 (31%), Gaps = 26/345 (7%)
Query: 156 QLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRF 215
QL R + QS T +I K+ T + + NF F
Sbjct: 73 QLVFTRDVTLVYQQSLIFTNYWIEEDNFKNATTSDSNTEPRIVWLANQTDVNNKKWNFDF 132
Query: 216 QPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPK 275
S + K++T+ ++N ID + +YY I+S F ++ D
Sbjct: 133 YNLSPASSKVKLITNTNFNNGPDLKYSNWIDDQMLDELVSYYTTKISSSVKFDLWVSDIN 192
Query: 276 LFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQ 335
+ + + K++ + Q +F Q R N S+ K ++
Sbjct: 193 IEDLWKGDNSVSFYNFL--KYVNKINIISDGNYQTIFFAQYFQDRTNESNYKQLTSTEAS 250
Query: 336 KMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQF 395
++ Y+ D K + + ++ NS +
Sbjct: 251 NLIKQYQT------DTNNSLYSKFQNTKIYDFLLASDFITMFNVESYSNSPYYLLGNNSV 304
Query: 396 ALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPM 455
D Y ++ + + S+ + +S+ N R FNF++ SI
Sbjct: 305 FYDVYPIDYDYYNMG--KTFFGSDATKFNSFIN-----RYQSF---FNFSSIHSITDFF- 353
Query: 456 MQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEI 500
N Y++ K++I + ++ +Q++ L+
Sbjct: 354 -------ERNAISYSSSKKNIIWIGDSLITDPSEMYSQRQEELQA 391
>gi|269955152|ref|YP_003324941.1| DNA topoisomerase I [Xylanimonas cellulosilytica DSM 15894]
gi|269303833|gb|ACZ29383.1| DNA topoisomerase I [Xylanimonas cellulosilytica DSM 15894]
Length = 924
Score = 39.1 bits (89), Expect = 3.0, Method: Composition-based stats.
Identities = 56/431 (12%), Positives = 125/431 (29%), Gaps = 69/431 (16%)
Query: 207 RAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSS 266
+A+A+ DG+ + T K + + +T+ + + + + S
Sbjct: 256 QAVAQAVVTGLDGADFAVRSLETKPYTRKPAAPFTTSTLQQEASRKLRMNARATMRTAQS 315
Query: 267 FSDFLKDPKLFKMLQLSLFPLNPEI-------TADKFLTLMQENDPIVSQVKYF-FQINF 318
+ ++ L+ E A+ + + P + Q K Q
Sbjct: 316 LYE----NGYITYMRTDSPALSAEAIDAARRQAAELYGSEFVPGTPRLYQSKSAGAQEAH 371
Query: 319 HRDNSSSTKIQQDSQIQKMLDLYKKN-CQILHDDKMQSLIKDYQLPLGKIK---SIDNLL 374
+ + +Q+ + L + +++ + S + D + ++ +
Sbjct: 372 EAIRPAGDSFRTPAQVARELSGDQFRLYELIWKRTVASQMADAKGSTASVRLGAVLSAAA 431
Query: 375 SGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDR 434
+ SA +IT + L AY D P++ A KD R
Sbjct: 432 GDLAGKDAIFSASGTVITFRGFLAAYEEGTDTED-------------SPEARAATPKDAR 478
Query: 435 LIKLNH-----AFNFNADGSIGPIPMMQSRLTIRDNVKH--------------YANRKRS 475
L ++ A + ADG P + ++ ++ +
Sbjct: 479 LPRMAQGDGLDARDLTADGHSTTPPARYTEASLVKALEELGIGRPSTYAATISTIQDRGY 538
Query: 476 IHDAENKSFNSMEQISTQKRINLEINSEVDY-YTLNINTIHSFEELLANKRILNFLLESK 534
+ + + + K + S VDY +T + +E+ +R LE
Sbjct: 539 VRTSGQAMIPTWLAFAVTKLLEDHFGSLVDYRFTAEME--QDLDEIAEGRRARGAWLEEF 596
Query: 535 GIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQD 594
++ SD T + K ++ GE+ + V+
Sbjct: 597 YFGDREAAAG-------SDA------VGTLATSGLKGLVDGL-----GEIDPVAVNSVEL 638
Query: 595 NFHIDDTCDLY 605
+ Y
Sbjct: 639 GEGLRLRVGRY 649
>gi|163761015|ref|ZP_02168093.1| hypothetical protein HPDFL43_03229 [Hoeflea phototrophica DFL-43]
gi|162281796|gb|EDQ32089.1| hypothetical protein HPDFL43_03229 [Hoeflea phototrophica DFL-43]
Length = 633
Score = 39.1 bits (89), Expect = 3.1, Method: Composition-based stats.
Identities = 55/382 (14%), Positives = 117/382 (30%), Gaps = 44/382 (11%)
Query: 66 DMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFS--PPPKVIQSDIQHKTII 123
D +A +F K LE D + +K + + + ++ +
Sbjct: 62 DTVNAIEFYTKALEFDPEN--------IDVKQRLMVALFTDGRFSEGVALARQLKDDPAV 113
Query: 124 QDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFL 183
Q E E + + + RLL+ +L++++ L
Sbjct: 114 AQVSQLAMAVEATTKRE----YRKAASLLNPADNNPIDRLLNTLLKAWADFGDGKGEEAL 169
Query: 184 KDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPD-GSLSKRDKILTDMQIEKIVSNYFN 242
+ V+ GL P Y + R+ A A + G+ ++ ++ D Q + +
Sbjct: 170 QSVV--GLEGPTWYPV---FTRYHAGAMSLALGDKAGARTQFTDLIADPQGGGAAPDTYI 224
Query: 243 NTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQE 302
T+ + + + + D L + F L L I AD +
Sbjct: 225 RTVMALAS------MEARDGNKRAALDALAAGEDFSPNYAPLAALRQLIEADGKPEPGVK 278
Query: 303 NDPIVSQVKYFF-QINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQ 361
+ F +RD + + + + + D ++ +
Sbjct: 279 TAQQGAAAALFTLGAALNRDGA--------EETVAVYLQFARTLNP-DDAATLVILGSLK 329
Query: 362 LPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNPS 421
LGK++ L + E + L A ++ +D L++++ S+P
Sbjct: 330 ERLGKMEDAIALYQMVPETSPMRRVSELQLGLALA----DMGRSAEAKDHLKSLIESDPK 385
Query: 422 DPDSYANKSK----DDRLIKLN 439
D SY D ++
Sbjct: 386 DLRSYLAYGSVLSQDKDYAEMA 407
>gi|194899231|ref|XP_001979164.1| GG13930 [Drosophila erecta]
gi|190650867|gb|EDV48122.1| GG13930 [Drosophila erecta]
Length = 1128
Score = 39.1 bits (89), Expect = 3.1, Method: Composition-based stats.
Identities = 29/273 (10%), Positives = 78/273 (28%), Gaps = 16/273 (5%)
Query: 145 RKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDN 204
N I L D + Y F + D+ T L+N
Sbjct: 633 SDNADDIKK--SLLSDTTVKKYS-NLFGLKSAQGRGASEADISTGLLSNQANGTQSEAGP 689
Query: 205 RFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSV 264
+++ F GS L D + ++ F+N + + + ++ + +
Sbjct: 690 KYQQ------FPQIGSTGSTIGALADKPETRKIAQIFSNALSSY--LENPATFRAELAAR 741
Query: 265 SSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSS 324
+ ++ P + + T + + +IN D++
Sbjct: 742 AHPTEPPSTPNFKPVTTTDPSLFSDGTAKYYLPTKGLPDATTPTPNSIAAEINHKFDSTL 801
Query: 325 STKIQQDSQIQKMLD----LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQL 380
+ + +++ + + D + ++ Q +KS ++LL
Sbjct: 802 APEFSTTTELYEGSTNRGLEFSGELSPPSQDSGEEFLQQQQTQ-SFVKSRNDLLKDARPQ 860
Query: 381 EGPNSAEEPIITLQFALDAYNLNMQDLDRDQLR 413
+ + + L+ ++ ++
Sbjct: 861 KLVTTHKPTEHPWALKSQTDFLDPLTINDGLMK 893
>gi|224535303|ref|ZP_03675842.1| hypothetical protein BACCELL_00164 [Bacteroides cellulosilyticus DSM
14838]
gi|224523080|gb|EEF92185.1| hypothetical protein BACCELL_00164 [Bacteroides cellulosilyticus DSM
14838]
Length = 1371
Score = 39.1 bits (89), Expect = 3.2, Method: Composition-based stats.
Identities = 57/412 (13%), Positives = 124/412 (30%), Gaps = 32/412 (7%)
Query: 127 KQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDV 186
+ Q+ + V E+ +Y+ + + + +D+ +L IT + L++
Sbjct: 806 QTEAQYNKAVLAEDQRYYTERLEALKKLDKTTAKTKLKTLAEIQSKITES--NKKLLENQ 863
Query: 187 LTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTID 246
N E RD + ++ Q ++ T
Sbjct: 864 RKQD-ENEISLLKEQRDKKLLVQESVYKSTKTKIELDYANQQITQQARDMLLLALEETNT 922
Query: 247 CVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPI 306
+ +NY V + K+ + + L E+ + Q+
Sbjct: 923 RERLNILKNYQTE----VGKAEIQTGNVKVTAVKEAGQAVLEAELANAQSRAKQQKE--- 975
Query: 307 VSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGK 366
+ + F+ F + ++ + D Q++ + Y+ QI+ D Q LI Q
Sbjct: 976 IESLLSSFKKEF---SLTNLPDETDLQLKVLEASYQARLQIIRDSLKQELITKEQAAAQ- 1031
Query: 367 IKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNL----NMQDLDRDQLRNVLTSNPSD 422
+ L+ N ++ L+ Y L ++ D LR
Sbjct: 1032 ----EKALNEAKGTAELNIVKDAENRKNGILEKYGLAGFQQRYNMQMDALRREKQQGLIS 1087
Query: 423 PDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENK 482
YA K +L AF++ G G I + Y +
Sbjct: 1088 AKDYAAAEKQIKLTAWKEAFDY-FSGLFGDAITALQDAEIANMEAKYDVEIEAAQGNA-- 1144
Query: 483 SFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESK 534
E++ + E E++ ++ +++AN + ++ +
Sbjct: 1145 -----EEVERLENEKAEKKLEIEKKYADVQFAVKASQIIANTAM--AIMTAM 1189
>gi|167760340|ref|ZP_02432467.1| hypothetical protein CLOSCI_02714 [Clostridium scindens ATCC 35704]
gi|167662013|gb|EDS06143.1| hypothetical protein CLOSCI_02714 [Clostridium scindens ATCC 35704]
Length = 1852
Score = 38.7 bits (88), Expect = 3.3, Method: Composition-based stats.
Identities = 50/400 (12%), Positives = 118/400 (29%), Gaps = 54/400 (13%)
Query: 73 FIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHKTIIQDYKQSHQH 132
+ K+ L +P L+ ++N + + F Q + I+ +
Sbjct: 492 LLAKVENQYLKNPDYLLGKVNEI----VTKVSQFGVGSLDGQEKTLYDFIVLLLTSHYAG 547
Query: 133 KEEV---ALEESKYFRKNIHKINSVDQLFKDRR--LLDYVLQSFSITPKYISLPFLKDVL 187
E E++ + ++ I + + +++ + + +I K +
Sbjct: 548 GENPPAWVTEQALPYLRSGAVIKDLMDMLVGDVVVIVNDIAANLNIDTGIAFSGLWKTAI 607
Query: 188 TLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDC 247
++ + + + F + I ++S Y +++
Sbjct: 608 DS----------QTNNGNLATILKQFNLN------------VEELINGLISEYMSDSFLT 645
Query: 248 VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEI------TADKFLTLMQ 301
NY + S D L D + + P+ P+ A + + Q
Sbjct: 646 GMGGLLDNYASSFLYDTESPDDILNDENGRTITWSTSTPVTPQEPSVANGLAPTQIAMTQ 705
Query: 302 ENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQ 361
++++ S T + Q S+ D + K ++L+
Sbjct: 706 GESADSRYLRWYTGA-----GVSGTAVAQISESGDFADAATFTAETQEVVKPKTLLNLGL 760
Query: 362 LPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFAL----DAYNLNMQDLDRDQLRNVLT 417
+ + + LE + + + A+ + ++ NV
Sbjct: 761 MATYTTQKARKYTAKITGLETGKTYYYRVGISETGNFSTPVAFTVKNEETSGFTFINVND 820
Query: 418 SN---PSDPDSYANKSKDDRLIKLNHAF-----NFNADGS 449
S SD ++Y N + + AF +F DGS
Sbjct: 821 SQGMIASDYETYLNTLAEAKSQFAGAAFVLHAGDFVDDGS 860
>gi|254779523|ref|YP_003057629.1| putative toxin-like outer membrane protein/vacuolating cytotoxin
(VacA) paralogue [Helicobacter pylori B38]
gi|254001435|emb|CAX29430.1| Putative toxin-like outer membrane protein/vacuolating cytotoxin
(VacA) paralogue [Helicobacter pylori B38]
Length = 2524
Score = 38.7 bits (88), Expect = 3.7, Method: Composition-based stats.
Identities = 40/277 (14%), Positives = 86/277 (31%), Gaps = 21/277 (7%)
Query: 330 QDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEP 389
QD +Q+ + Q L DD Q + YQ L ++ N ++ + +++
Sbjct: 420 QDETLQETFNKQSIITQFLGDDLQQQAQQTYQEDLTHSQNALNNVTSDNTIANNDTSYTQ 479
Query: 390 IITLQFALDAYNLNMQDLDRDQLRNVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGS 449
A DA L + Q L + + AN F+
Sbjct: 480 SKNTTVAKDAQGLENTNQKIQQDEQALEKDLAQIKQLANSPT-----------GFSEQAF 528
Query: 450 IGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTL 509
Q N ++ N K+ + + +Q Q++ ++ +
Sbjct: 529 NQAQKQEQQDEQTLQNDENAFNTKQEGLKQAIQQAQAQQQKQEQQQAQQTYQEDLTHSQN 588
Query: 510 NINTIHSFEELLANKRIL------NFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANT 563
+N + S + N +++G+++ + + + DL K AN
Sbjct: 589 ALNNVTSDNTIANNDTSYTQSKNTTVAKDAQGLENTNQKIQQDEQALEKDLAQIKQLAN- 647
Query: 564 YKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600
+ E +FN E ++ + + +
Sbjct: 648 -SPTGFSE--QAFNQAQKQEQQDEQTLQNDEKTFNAE 681
>gi|307250283|ref|ZP_07532236.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 4
str. M62]
gi|306857665|gb|EFM89768.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 4
str. M62]
Length = 385
Score = 38.3 bits (87), Expect = 4.4, Method: Composition-based stats.
Identities = 28/169 (16%), Positives = 66/169 (39%), Gaps = 9/169 (5%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL-LESKGIDSQKVREDFLCE 548
++ + R+ ++ + + I + LL + +++ E+ +D Q V + F
Sbjct: 23 LAERHRLAFDVVRSKEITQKPLRDIEREKALL--QALVSHAEAENYQLDPQYVTQIFQRI 80
Query: 549 IFKSDLKDPKSFANTYKDNRYKEIISSF--NFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
I S L N + + + I +F + ++ ++ K I+ +CD ++
Sbjct: 81 IEDSVLTQQNYLQNKLNEQKEQNISIAFLGMRGSYSNMASRQFAKKYQGSLIELSCDSFQ 140
Query: 607 HQMIEKKEEEKDPNIALALYFKR-TIPNIRNHYEILGDSKLFKVVSKKL 654
+ E E + + L + T +I + Y++L + L V
Sbjct: 141 QVFDKVSEGEAEFGV---LPLENTTSGSINDVYDLLQHTDLAVVGELAY 186
>gi|165976458|ref|YP_001652051.1| prephenate dehydratase / chorismate mutase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|165876559|gb|ABY69607.1| prephenate dehydratase / chorismate mutase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 385
Score = 38.3 bits (87), Expect = 4.4, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 65/169 (38%), Gaps = 9/169 (5%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL-LESKGIDSQKVREDFLCE 548
++ + R+ ++ + + I + LL + +++ E+ +D Q V + F
Sbjct: 23 LAERHRLAFDVVRSKEITQKPLRDIEREKALL--QALVSHAEAENYQLDPQYVTQIFQRI 80
Query: 549 IFKSDLKDPKSFANTYKDNRYKEIISSF--NFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
I S L N + + + +F + ++ ++ K I+ +CD ++
Sbjct: 81 IEDSVLTQQNYLQNKLNAQKEQNVSIAFLGMRGSYSNMASRQFAKKYQGSLIELSCDSFQ 140
Query: 607 HQMIEKKEEEKDPNIALALYFKR-TIPNIRNHYEILGDSKLFKVVSKKL 654
+ E E + + L + T +I + Y++L + L V
Sbjct: 141 QVFDKVSEGEAEFGV---LPLENTTSGSINDVYDLLQHTDLAVVGELAY 186
>gi|307257079|ref|ZP_07538854.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 10
str. D13039]
gi|306864450|gb|EFM96358.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 10
str. D13039]
Length = 385
Score = 38.3 bits (87), Expect = 4.6, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 65/169 (38%), Gaps = 9/169 (5%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL-LESKGIDSQKVREDFLCE 548
++ + R+ ++ + + I + LL + +++ E+ +D Q V + F
Sbjct: 23 LAERHRLAFDVVRSKEITQKPLRDIEREKALL--QALVSHAEAENYQLDPQYVTQIFQRI 80
Query: 549 IFKSDLKDPKSFANTYKDNRYKEIISSF--NFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
I S L N + + + +F + ++ ++ K I+ +CD ++
Sbjct: 81 IEDSVLTQQNYLQNKLNAQKEQNVSIAFLGMRGSYSNMASRQFAKKYQGSLIELSCDSFQ 140
Query: 607 HQMIEKKEEEKDPNIALALYFKR-TIPNIRNHYEILGDSKLFKVVSKKL 654
+ E E + + L + T +I + Y++L + L V
Sbjct: 141 QVFDKVSEGEAEFGV---LPLENTTSGSINDVYDLLQHTDLAVVGELAY 186
>gi|223558007|gb|ACM91013.1| DNA primase [uncultured bacterium URE4]
Length = 658
Score = 38.3 bits (87), Expect = 5.3, Method: Composition-based stats.
Identities = 38/268 (14%), Positives = 87/268 (32%), Gaps = 15/268 (5%)
Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAM--AENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
+K VL +P Y + A A F + + D + N
Sbjct: 333 VKVVLIPDGDDPDSYARKHTLEEVEAFIAANEQDFIAFKADLLLGEAGNDPLKRANLIND 392
Query: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFS-DFLKDPKLFKMLQLSLFPLNPEITADKFLTL 299
+++ +P ++ Y AI++ D L D ++ + + + +
Sbjct: 393 IADSVAGIPDAVKRSVYTDAISAKFRIDTDILTD-RVRRTREKIQGEERTQAQREAIRAR 451
Query: 300 MQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKD 359
+E+ P + Y +N R + + I S+ + + + L + +
Sbjct: 452 REEDVPRTQEATYTPPVNELRALETQSPILAPSERELLRFILMDGSTPLVFESDSEFYSE 511
Query: 360 YQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSN 419
+ + ID L+G + ++ + + L ++D++ L +
Sbjct: 512 SPQTVAEF--IDTALAGDGIVFANDAYQRTYEAY------FALYDAGKEQDEIVRDLLNG 563
Query: 420 PSDPDSY-ANKSKDDRLIKLNHAFNFNA 446
P D + ++ D+ NF A
Sbjct: 564 PDDAVRFVVSQLSGDKYELTVK--NFQA 589
>gi|307261516|ref|ZP_07543185.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 12
str. 1096]
gi|306868799|gb|EFN00607.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 12
str. 1096]
Length = 385
Score = 38.3 bits (87), Expect = 5.5, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 65/169 (38%), Gaps = 9/169 (5%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL-LESKGIDSQKVREDFLCE 548
++ + R+ ++ + + I + LL + +++ E+ +D Q V + F
Sbjct: 23 LAERHRLAFDVVRSKEITQKPLRDIEREKALL--QALVSHAEAENYQLDPQYVTQIFQRI 80
Query: 549 IFKSDLKDPKSFANTYKDNRYKEIISSF--NFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
I S L N + + + +F + ++ ++ K I+ +CD ++
Sbjct: 81 IEDSVLTQQNYLQNKLNAQKEQNVSIAFLGMRGSYSNMASRQFAKKYQGSLIELSCDSFQ 140
Query: 607 HQMIEKKEEEKDPNIALALYFKR-TIPNIRNHYEILGDSKLFKVVSKKL 654
+ E E + + L + T +I + Y++L + L V
Sbjct: 141 QVFDKVSEGEAEFGV---LPLENTTSGSINDVYDLLQHTDLAVVGELAY 186
>gi|307245943|ref|ZP_07528026.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|307254917|ref|ZP_07536739.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|307259358|ref|ZP_07541085.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 11
str. 56153]
gi|306853162|gb|EFM85384.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|306862158|gb|EFM94130.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|306866594|gb|EFM98455.1| Prephenate dehydratase [Actinobacillus pleuropneumoniae serovar 11
str. 56153]
Length = 385
Score = 38.3 bits (87), Expect = 5.5, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL-LESKGIDSQKVREDFLCE 548
++ + R+ ++ + + I + LL + +++ E+ +D Q V + F
Sbjct: 23 LAERHRLAFDVVRSKEITQKPLRDIEREKALL--QALVSHAEAENYQLDPQYVTQIFQRI 80
Query: 549 IFKSDLKDPKSFANTYKDNRYKEIISSF--NFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
I S L N + + + +F + ++ ++ K I+ +CD ++
Sbjct: 81 IEDSVLTQQNYLQNKLNAQKEQNVSIAFLGMRGSYSNMASRQFAKKYQGSLIELSCDSFQ 140
Query: 607 HQMIEKKEEEKDPNIALALYFKR-TIPNIRNHYEILGDSKLFKVVSKKL 654
+ E + + L + T +I + Y++L + L V
Sbjct: 141 QVFDKVSGGEAEFGV---LPLENTTSGSINDVYDLLQHTDLAVVGELAY 186
>gi|32033952|ref|ZP_00134208.1| COG0077: Prephenate dehydratase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208507|ref|YP_001053732.1| P-protein [Actinobacillus pleuropneumoniae L20]
gi|126097299|gb|ABN74127.1| P-protein [Actinobacillus pleuropneumoniae serovar 5b str. L20]
Length = 385
Score = 37.9 bits (86), Expect = 5.7, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 64/169 (37%), Gaps = 9/169 (5%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL-LESKGIDSQKVREDFLCE 548
++ + R+ ++ + + I + LL + +++ E+ +D Q V + F
Sbjct: 23 LAERHRLAFDVVRSKEITQKPLRDIEREKALL--QALVSHAEAENYQLDPQYVTQIFQRI 80
Query: 549 IFKSDLKDPKSFANTYKDNRYKEIISSF--NFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
I S L N + + + +F + ++ ++ K I+ +CD ++
Sbjct: 81 IEDSVLTQQNYLQNKLNAQKEQNVSIAFLGMRGSYSNMASRQFAKKYQGSLIELSCDSFQ 140
Query: 607 HQMIEKKEEEKDPNIALALYFKR-TIPNIRNHYEILGDSKLFKVVSKKL 654
+ E + + L + T +I + Y++L + L V
Sbjct: 141 QVFDKVSGGEAEFGV---LPLENTTSGSINDVYDLLQHTDLAVVGELAY 186
>gi|34556675|ref|NP_906490.1| hypothetical protein WS0233 [Wolinella succinogenes DSM 1740]
gi|34482389|emb|CAE09390.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 485
Score = 37.9 bits (86), Expect = 5.8, Method: Composition-based stats.
Identities = 38/369 (10%), Positives = 116/369 (31%), Gaps = 46/369 (12%)
Query: 57 YALKAFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQY----------------- 99
++AF + + + +K+LE + P + L+
Sbjct: 120 VKMEAFHVEGKFDDKTY-RKVLEENHYKPAAFERALHDSLLLEKLGVILTPSVTELEKES 178
Query: 100 FARSY--DFSPPPKVIQSDIQHKTIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQL 157
++ K + S + + +S + + + + I+ ++ D++
Sbjct: 179 LGAAFYIQDKLSIKTLSSTSLKPVVSDEEVKSFWGENQDVYMTDRVYDI-IYSLSKNDEI 237
Query: 158 FKDRRLLDYVLQSF-----SITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAEN 212
L SF + + + + + + + + + +
Sbjct: 238 SASDEELKIHYDSFKNNYLGLDGRPLEFELARTRVEKDYKDAQAEKNALKT--YIEFKK- 294
Query: 213 FRFQPDGS---LSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSD 269
P+G+ L++ D+ L D + ++ T+ VP S + Y + + + S+
Sbjct: 295 -SPTPEGTRYSLAESDETLGDELLYRLSEAKVGETLKPVP--SPEGYLTIKLMGIKE-SE 350
Query: 270 FLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQ 329
+K ++ + L ++ E+ +V F + D + + ++
Sbjct: 351 PMKFEAAKELARNDLLAQKKRDLLEEMAKKELES--FKGEVIGFIGRD---DVAKISSLE 405
Query: 330 QDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSID-----NLLSGKCQLEGPN 384
+ + + +++ + + + + L +KS + + ++
Sbjct: 406 TEEAAEFLAQVFQSSEPKGYVLLDEKAVLFEILEQKLLKSEEMIKNLDFIAQNVTQIKER 465
Query: 385 SAEEPIITL 393
AE +
Sbjct: 466 LAEGAFLEY 474
>gi|85704510|ref|ZP_01035612.1| uncharacterized conserved protein [Roseovarius sp. 217]
gi|85670918|gb|EAQ25777.1| uncharacterized conserved protein [Roseovarius sp. 217]
Length = 1236
Score = 37.9 bits (86), Expect = 6.2, Method: Composition-based stats.
Identities = 52/367 (14%), Positives = 102/367 (27%), Gaps = 49/367 (13%)
Query: 184 KDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNN 243
+ L + + N DNR RAMA +F SL+ + D+ +K+
Sbjct: 55 RSFLEIDVDN--------FDNRMRAMAPRAQFSVPNSLTGEGSLAVDLTFKKMSDFTPQG 106
Query: 244 TIDC-----------VPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT 292
+ + Y + + L P L + L + +
Sbjct: 107 IAEQFDPLRPLLEARRQLTDLMAYMDGKAGAEALIEQLLAQPGLLQALTGTGTSSDDRQA 166
Query: 293 ADKFLTL--------MQENDPIVSQVKYFFQINFHRDNSSSTKIQQ-------DSQIQKM 337
A + L D ++ + ++ D S + + + Q
Sbjct: 167 ALESLRAPISALDGPEDTTDDTLANLAAQAPVDAPPDTSVADALNSLGPAPEPEEQDDVS 226
Query: 338 LDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSG----KCQLEGPNSAEEPIITL 393
L + D + +I++ ++L S E A P T
Sbjct: 227 AALTGLRVAEMIQSPETDTAGDVLSGITRIETPEDLDSTADVLSALAEYAEDAPPPRATS 286
Query: 394 QFALDAYNLNMQDLDRDQLRNVLTSNPS--------DPDSYANKSKD-DRLIKLNHAFNF 444
L A + Q VL S + DS A+ DR+ ++ +
Sbjct: 287 NDILYAIARVPETEPESQTVAVL-SGLTPVADAEEVGEDSAADVLSAIDRVAEIAPEDDL 345
Query: 445 NADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINLEINSEV 504
++ G P+++ D + A+ + + + I +
Sbjct: 346 DSI-FSGIEPVVEPETAENDTGNVLSGIASVASAAQADAIDDILDALELPEIAEVSTASS 404
Query: 505 DYYTLNI 511
D I
Sbjct: 405 DAVLSGI 411
>gi|322515213|ref|ZP_08068211.1| chorismate mutase [Actinobacillus ureae ATCC 25976]
gi|322118718|gb|EFX90924.1| chorismate mutase [Actinobacillus ureae ATCC 25976]
Length = 385
Score = 37.9 bits (86), Expect = 6.7, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 66/169 (39%), Gaps = 9/169 (5%)
Query: 490 ISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFL-LESKGIDSQKVREDFLCE 548
++ + R+ ++ + + I + LL + +++ E+ +D Q V + F
Sbjct: 23 LAERHRLAFDVVRSKEITQKPLRDIEREKALL--QALVSHAEAENYQLDPQYVTQIFQRI 80
Query: 549 IFKSDLKDPKSFANTYKDNRYKEIISSF--NFDIHGELSHKKIGKVQDNFHIDDTCDLYK 606
I S L N + + + + +F + ++ ++ K I+ +CD ++
Sbjct: 81 IEDSVLTQQNYLQNKLNEQKEQNVSIAFLGMRGSYSNMASRQFAKKYQGSLIELSCDSFQ 140
Query: 607 HQMIEKKEEEKDPNIALALYFKR-TIPNIRNHYEILGDSKLFKVVSKKL 654
+ E E + + L + T +I + Y++L + L V
Sbjct: 141 QVFDKVSEGEAEFGV---LPLENTTSGSINDVYDLLQHTDLAVVGELAY 186
>gi|283850852|ref|ZP_06368138.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B]
gi|283573775|gb|EFC21749.1| protein of unknown function DUF1078 [Desulfovibrio sp. FW1012B]
Length = 551
Score = 37.5 bits (85), Expect = 7.5, Method: Composition-based stats.
Identities = 28/212 (13%), Positives = 63/212 (29%), Gaps = 19/212 (8%)
Query: 157 LFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQ 216
+ D S S+ F + + K + + A NF F
Sbjct: 71 VVSDYSQGGLETTSNSLDMAINGNGFFMVKQKSQVGSNGKMLNTGNQTNYYSRAGNFSFD 130
Query: 217 PDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKL 276
DG L + +Q K+ + ++S + S ++D +L
Sbjct: 131 SDGYLVTPQGL--AVQGWKVDQERIDAANASGTVLSQ-----------TPVSGEIQDIRL 177
Query: 277 FKMLQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQK 336
+ F + T+ L ++D + + N++ + S QD +
Sbjct: 178 SQ------FTSPAKATSSVTLITNLDSDTKSASTRSASNANYYYAMTESWDGTQDPAMPS 231
Query: 337 MLDLYKKNCQILHDDKMQSLIKDYQLPLGKIK 368
Y+ ++ ++ + Y + +
Sbjct: 232 TAYSYQTTVKVYDENGSPHTLTTYYDKVADVN 263
>gi|315640129|ref|ZP_07895251.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus italicus DSM 15952]
gi|315484106|gb|EFU74580.1| ABC superfamily ATP binding cassette transporter, membrane protein
[Enterococcus italicus DSM 15952]
Length = 872
Score = 37.5 bits (85), Expect = 8.3, Method: Composition-based stats.
Identities = 37/302 (12%), Positives = 84/302 (27%), Gaps = 35/302 (11%)
Query: 85 PKSLVNQLN--------SLKYQY---FARSY---DFSPPPKVIQSDIQHKTIIQDYKQSH 130
S +NQL +++Y ++ ++ I +T +
Sbjct: 532 SSSYLNQLGFRSSGTNLNIRYNNNTLLMDAFTGIKYNIASTPISKYGFTQTTTKGNYSLF 591
Query: 131 QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLG 190
++ + ++L D L L++Y+ + Y +L ++ + T
Sbjct: 592 ENTDALSLGYLASTDDQAVTTYDNDNLLNQTTLMNYLS---GLDLNYFTLYPIRVINT-- 646
Query: 191 LANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTIDCVPI 250
N + ++ +A D + T + SNY + V I
Sbjct: 647 --NNTTIETQGNQTTYKEVAS--NLAKDVTWDVTIPANTQAYLSLYPSNYNDLQSSTVTI 702
Query: 251 VSDQNYYKLAINSVSSFSDF--LKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDPIVS 308
+ K +N + D + + F ++T + +
Sbjct: 703 RVNGTERKTQLNINGQYYDLGYYANETTVTF--AASFYGTDQVTFQTPKVVGLDTIAYQE 760
Query: 309 QVKYFFQIN--FHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGK 366
V N N ++ + Q ++ I +D I + +
Sbjct: 761 AVDAIQSQNVSMTTTNRGASATITTGKEQALITT------IPYDKGWSVAIDGKKATVSS 814
Query: 367 IK 368
K
Sbjct: 815 FK 816
>gi|153809496|ref|ZP_01962164.1| hypothetical protein BACCAC_03814 [Bacteroides caccae ATCC 43185]
gi|149127877|gb|EDM19100.1| hypothetical protein BACCAC_03814 [Bacteroides caccae ATCC 43185]
Length = 474
Score = 37.5 bits (85), Expect = 9.2, Method: Composition-based stats.
Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 5/176 (2%)
Query: 280 LQLSLFPLNPEITADKFLTLMQENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLD 339
L L+ ++T KF+ + ++ ++ +N+ T + + D
Sbjct: 185 LTLAASMNRFQVTGTKFIKVTWKDGKKAEAEQWCKTWLGKAENNGKTSADAWTAFKAAAD 244
Query: 340 LYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLSGKC---QLEGPNSAEEPIITLQFA 396
+ D + L + + S + + L P E +A
Sbjct: 245 GFNNEVWDGKSDLSKKAALSKWLQVVDVTSANQGILMNRFSRTLSIPALTVEEEANWFWA 304
Query: 397 LDAYNLNMQDLDRDQLRNVLTSNPSDPDSY-ANKSKDDRLIKLNHAFNFNADGSIG 451
Y + D + ++ SD SY + D K AFNF ++G G
Sbjct: 305 -KTYAGDRYDFTNGTFKPDGKTDLSDVSSYFTATAFDFGAGKKAAAFNFFSNGITG 359
>gi|269216996|ref|ZP_06160850.1| hypothetical membrane protein [Slackia exigua ATCC 700122]
gi|269129803|gb|EEZ60887.1| hypothetical membrane protein [Slackia exigua ATCC 700122]
Length = 728
Score = 37.5 bits (85), Expect = 9.3, Method: Composition-based stats.
Identities = 36/248 (14%), Positives = 77/248 (31%), Gaps = 13/248 (5%)
Query: 323 SSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDYQLPLGKIKSIDNLLS--GKCQL 380
++ ++ + L D L G + SI + S
Sbjct: 215 DAARDMRSAEGDMRAFSSLMTAASGLSDASASMLSSSKDASSGAVSSITDAASGLSDASD 274
Query: 381 EGPNSAEEPIITLQFALDAY-NLNMQDLDRDQLRNVLTSNPSDP-DSYANKSKDDRLIKL 438
+ L +L + L+ + +S+ S S A +++D R+
Sbjct: 275 SFDAATGAVQGALAQSLAGFDGLDAEVTSALDDAQGRSSDASAILRSAAQEAEDSRV--- 331
Query: 439 NHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAENKSFNSMEQISTQKRINL 498
A+ D ++ I + A ++++ DA + S Q
Sbjct: 332 --AYESVRDAVAAADTSGEATAAIDRVIAELAALQQNLGDAADALDAGTSDASAQ---ID 386
Query: 499 EINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPK 558
+ S + +I+ + ++L + L L S V D L ++ S ++
Sbjct: 387 TVRSSIADAKASISDVSGSDDLRKSLDALTASLGDISTKSSTVASD-LADVAGSLSRNAG 445
Query: 559 SFANTYKD 566
S ++ D
Sbjct: 446 SLSSRLSD 453
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.303 0.117 0.274
Lambda K H
0.267 0.0362 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,329,329,555
Number of Sequences: 14124377
Number of extensions: 386134367
Number of successful extensions: 1274985
Number of sequences better than 10.0: 638
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 997
Number of HSP's that attempted gapping in prelim test: 1269417
Number of HSP's gapped (non-prelim): 3487
length of query: 750
length of database: 4,842,793,630
effective HSP length: 147
effective length of query: 603
effective length of database: 2,766,510,211
effective search space: 1668205657233
effective search space used: 1668205657233
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 85 (37.5 bits)