RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62] (750 letters) >2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Agrobacterium tumefaciens str} (A:69-192) Length = 124 Score = 116 bits (291), Expect = 1e-26 Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 3/126 (2%) Query: 16 SKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFIK 75 K VSK P V+ E YYRE+I + +ID+F D RL++YALKA GL D ++A+ FI+ Sbjct: 1 GKSLERVSKQPDVARETEYYREKIGSVKSIDDFXADTRLYNYALKAHGLEDXAYAKAFIR 60 Query: 76 KILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKV-IQSDIQHKTIIQDYKQSHQHKE 134 K+L SD + N+L+ +Y A+S DF+ ++ +I +Y Q E Sbjct: 61 KVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYA--RQTLE 118 Query: 135 EVALEE 140 + A ++ Sbjct: 119 QEAGDD 124 Score = 105 bits (265), Expect = 1e-23 Identities = 24/113 (21%), Positives = 49/113 (43%) Query: 133 KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLA 192 K+ E++Y+R+ I + S+D D RL +Y L++ + + F++ VLT G + Sbjct: 9 KQPDVARETEYYREKIGSVKSIDDFXADTRLYNYALKAHGLEDXAYAKAFIRKVLTEGAS 68 Query: 193 NPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNYFNNTI 245 + + + DNR+ +A++ F G+ + + I Sbjct: 69 DKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQTLEQEA 121 Score = 101 bits (253), Expect = 4e-22 Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 10/131 (7%) Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545 S+E++S Q ++ E +YY I ++ S ++ A+ R+ N+ L++ G++ + F Sbjct: 3 SLERVSKQP----DVARETEYYREKIGSVKSIDDFXADTRLYNYALKAHGLEDXAYAKAF 58 Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605 + ++ D +FAN DNRY E+ S +F G Y Sbjct: 59 IRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAA------ATATEAAKSGVIGNY 112 Query: 606 KHQMIEKKEEE 616 Q +E++ + Sbjct: 113 ARQTLEQEAGD 123 Score = 76.7 bits (189), Expect = 8e-15 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 13/94 (13%) Query: 357 IKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVL 416 + Y+ +G +KSID+ + +L +AL A+ L + +R VL Sbjct: 17 TEYYREKIGSVKSIDDFXADT-RL------------YNYALKAHGLEDXAYAKAFIRKVL 63 Query: 417 TSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSI 450 T SD +++ANK D+R +L + +F G+ Sbjct: 64 TEGASDKNAFANKLSDNRYAELAKSLDFAGLGAA 97 Score = 38.6 bits (90), Expect = 0.003 Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 10/104 (9%) Query: 250 IVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLMQENDP---- 305 + + YY+ I SV S DF D +L+ L L A F+ + Sbjct: 13 VARETEYYREKIGSVKSIDDFXADTRLYNYA-LKAHGLEDXAYAKAFIRKVLTEGASDKN 71 Query: 306 -IVSQVKYFFQINFHR----DNSSSTKIQQDSQIQKMLDLYKKN 344 +++ + + ++ ++ Y + Sbjct: 72 AFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQ 115 >2o8s_A AGR_C_984P; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Agrobacterium tumefaciens str} (A:1-68,A:193-323) Length = 199 Score = 93.9 bits (233), Expect = 7e-20 Identities = 24/77 (31%), Positives = 39/77 (50%) Query: 615 EEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIRILKK 674 ++ + + LALYF+R P I++ + L D L +V L FA K+ +++K Sbjct: 66 QDINNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALIEK 125 Query: 675 HIKINDFKDSKKVEDFL 691 I I D +D +KV L Sbjct: 126 SINIKDLQDPEKVGKLL 142 Score = 28.8 bits (64), Expect = 2.4 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 11/77 (14%) Query: 34 YYRERIKHISTIDEFIKDKRLFSYALKAFGLSD-MS------HAEKFIKKILESDLSDPK 86 Y+ + I + +F+ D L F L D + A K I DL DP+ Sbjct: 77 YFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALIEKSINIKDLQDPE 136 Query: 87 SLVNQLNSLKYQYFARS 103 ++ L ++ Sbjct: 137 ----KVGKLLERFTIXW 149 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 29.4 bits (66), Expect = 1.6 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 23/49 (46%) Query: 364 LGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAY-NLNMQD-LDRD 410 L + SI++L+ ++ F Y + MQ + RD Sbjct: 2 LADVMSIESLVE--------------VV---F----YRGMTMQVAVPRD 29 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 29.1 bits (65), Expect = 2.2 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 16/55 (29%) Query: 12 KDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEF---IKDKRLFSYALKAFG 63 + ++ + S+D + + ER + I E ++ A + +G Sbjct: 49 EALKLEAEEIPSED-----QNEFLLERTREIHN--EAESQLRA------AQQQWG 90 >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} (A:532-659) Length = 128 Score = 26.9 bits (59), Expect = 8.2 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 10/74 (13%) Query: 611 EKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPERKKIR 670 ++E+E L K EILGD VVS KL +P + Sbjct: 7 AEREKEIKEYEPLTKALK----------EILGDQVEKVVVSYKLLDAPAAIRTGQFGWSA 56 Query: 671 ILKKHIKINDFKDS 684 +++ +K +DS Sbjct: 57 NMERIMKAQALRDS 70 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.135 0.381 Gapped Lambda K H 0.267 0.0542 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 5,475,158 Number of extensions: 256243 Number of successful extensions: 664 Number of sequences better than 10.0: 1 Number of HSP's gapped: 663 Number of HSP's successfully gapped: 23 Length of query: 750 Length of database: 4,956,049 Length adjustment: 95 Effective length of query: 655 Effective length of database: 1,744,574 Effective search space: 1142695970 Effective search space used: 1142695970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.5 bits)