RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781009|ref|YP_003065422.1| hypothetical protein
CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62]
(750 letters)
>d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 225
Score = 179 bits (456), Expect = 7e-46
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 10/206 (4%)
Query: 486 SMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQKVREDF 545
S+E++S Q ++ E +YY I ++ S ++ +A+ R+ N+ L++ G++ + F
Sbjct: 18 SLERVSKQP----DVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYAKAF 73
Query: 546 LCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLY 605
+ ++ D +FAN DNRY E+ S +F G Y
Sbjct: 74 IRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAA------ATATEAAKSGVIGNY 127
Query: 606 KHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYFAVLPE 665
Q +E++ + + + LALYF+R P I++ + L D L +V L FA
Sbjct: 128 ARQTLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADV 187
Query: 666 RKKIRILKKHIKINDFKDSKKVEDFL 691
K+ +++K I I D +D +KV L
Sbjct: 188 DKQAALIEKSINIKDLQDPEKVGKLL 213
Score = 150 bits (381), Expect = 3e-37
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 14/209 (6%)
Query: 15 QSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALKAFGLSDMSHAEKFI 74
K VSK P V+ E YYRE+I + +ID+F+ D RL++YALKA GL DM++A+ FI
Sbjct: 15 IGKSLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYAKAFI 74
Query: 75 KKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPP-PKVIQSDIQHKTIIQDYKQSH--- 130
+K+L SD + N+L+ +Y A+S DF+ ++ +I +Y +
Sbjct: 75 RKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQTLEQ 134
Query: 131 -QHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISLP-------F 182
+ + + YF + I S D L +F++ + +
Sbjct: 135 EAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTFNLPDAFAAADVDKQAALI 194
Query: 183 LKDVLTLGLANPKKYFIESRDNRFRAMAE 211
K + L +P+K + RF M E
Sbjct: 195 EKSINIKDLQDPEK--VGKLLERFTIMWE 221
Score = 102 bits (255), Expect = 1e-22
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 3/166 (1%)
Query: 122 IIQDYKQSHQH--KEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYIS 179
I QD +S + K+ E++Y+R+ I + S+D D RL +Y L++ + +
Sbjct: 11 ISQDIGKSLERVSKQPDVARETEYYREKIGSVKSIDDFMADTRLYNYALKAHGLEDMAYA 70
Query: 180 LPFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSN 239
F++ VLT G ++ + + DNR+ +A++ F G+ + + I
Sbjct: 71 KAFIRKVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGAAATATEAAKSGVIGNYARQ 130
Query: 240 YFNNTIDCV-PIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSL 284
V Y++ ++ S DFL D L ++ + +
Sbjct: 131 TLEQEAGDDNNGVRLALYFERKAPTIKSGLDFLADDALAQVFRTTF 176
Score = 87.2 bits (216), Expect = 5e-18
Identities = 40/213 (18%), Positives = 79/213 (37%), Gaps = 40/213 (18%)
Query: 354 QSLIKDYQLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLR 413
+ Y+ +G +KSID+ ++ +L +AL A+ L + +R
Sbjct: 29 ARETEYYREKIGSVKSIDDFMADT-RL------------YNYALKAHGLEDMAYAKAFIR 75
Query: 414 NVLTSNPSDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRK 473
VLT SD +++ANK D+R +L + +F G+ + + +Y +
Sbjct: 76 KVLTEGASDKNAFANKLSDNRYAELAKSLDFAGLGA----AATATEAAKSGVIGNY--AR 129
Query: 474 RSIHDAENKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLES 533
+++ N + R+ L Y+ TI S + LA+ + +
Sbjct: 130 QTLEQEAGDDNNGV-------RLAL-------YFERKAPTIKSGLDFLADDALAQVFRTT 175
Query: 534 KGIDSQKVREDFL--CEIFK-----SDLKDPKS 559
+ D + + DL+DP+
Sbjct: 176 FNLPDAFAAADVDKQAALIEKSINIKDLQDPEK 208
>g1d4m.1 b.121.4.1 (4:,2:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 320
Score = 36.7 bits (85), Expect = 0.007
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 239 NYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLN-PEITADKFL 297
+Y N NYYK A ++ ++ DF +DP F + + P + +D+
Sbjct: 25 HYTN-----------INYYKDAASNSANRQDFTQDPSKFTEPVKDVMIKSLPALNSDRVR 73
Query: 298 TLMQENDPIVSQ 309
++ N I +Q
Sbjct: 74 SITLGNSTITTQ 85
>g1bev.1 b.121.4.1 (4:,2:) Bovine enterovirus coat proteins {Bovine
enterovirus, VG-5-27 [TaxId: 12064]}
Length = 284
Score = 34.5 bits (79), Expect = 0.035
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 239 NYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEIT-ADKFL 297
NY N NYY A ++ + DF +DP F Q + +D+
Sbjct: 4 NYNNI-----------NYYSHAASAAQNKQDFTQDPSKFT--QPIADVIKEACGYSDRVA 50
Query: 298 TLMQENDPIVSQ 309
L N I +Q
Sbjct: 51 QLTLGNSTITTQ 62
>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
3, strain Sabin [TaxId: 12086]}
Length = 334
Score = 33.3 bits (76), Expect = 0.077
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
Query: 236 IVSNYFNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLF-----PLNPE 290
NY NYYK + ++ +S D+ +DP F + LN
Sbjct: 22 STINYTT-----------INYYKDSASNAASKQDYSQDPSKFTEPLKDVLIKTAPALNAC 70
Query: 291 ITADKFLTLMQENDPIVSQ 309
+D+ L L N I +Q
Sbjct: 71 GYSDRVLQLTLGNSTITTQ 89
>g1ncq.1 b.121.4.1 (D:,B:) Rhinovirus coat proteins {Human
rhinovirus B 14 (HRV-14) [TaxId: 12131]}
Length = 295
Score = 30.2 bits (68), Expect = 0.58
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 255 NYYKLAINSVSSFSDFLKDPKLF-----KMLQLSLFPLNPEITADKFLTLMQENDPIVSQ 309
NYYK A ++ S+ DP F ++ LN +D+ + N I +Q
Sbjct: 2 NYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALNG--YSDRVQQITLGNSTITTQ 59
>d2hnga1 d.33.1.2 (A:5-128) Hypothetical protein SP1558
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 124
Score = 29.0 bits (65), Expect = 1.4
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626
R +E +S ++FD + G + ++ Q+++ +E + ++ + L
Sbjct: 4 KREQEFVSQYHFDARNFEWENENGAPETKVDVNF-------QLLQHDQENQVTSLIVILS 56
Query: 627 F 627
F
Sbjct: 57 F 57
>d2o2aa1 d.33.1.2 (A:1-124) Hypothetical protein gbs1413
{Streptococcus agalactiae [TaxId: 1311]}
Length = 124
Score = 27.1 bits (60), Expect = 5.0
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 567 NRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDDTCDLYKHQMIEKKEEEKDPNIALALY 626
R +E ++ +++D ++ G + NF + Q+ + E K +I L
Sbjct: 4 IREQEFVNQYHYDARNLEWEEENGTPKTNFEVT-------FQLANRDEAAKVTSIVAVLQ 56
Query: 627 F 627
F
Sbjct: 57 F 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.381
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,766,392
Number of extensions: 136507
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 23
Length of query: 750
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 658
Effective length of database: 1,144,436
Effective search space: 753038888
Effective search space used: 753038888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)