BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781009|ref|YP_003065422.1| hypothetical protein
CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62]
         (750 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 750

 Score = 1515 bits (3923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 750/750 (100%), Positives = 750/750 (100%)

Query: 1   MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60
           MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK
Sbjct: 1   MIPSHVAPFPSKDIQSKLFSTVSKDPIVSCEERYYRERIKHISTIDEFIKDKRLFSYALK 60

Query: 61  AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120
           AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK
Sbjct: 61  AFGLSDMSHAEKFIKKILESDLSDPKSLVNQLNSLKYQYFARSYDFSPPPKVIQSDIQHK 120

Query: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180
           TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL
Sbjct: 121 TIIQDYKQSHQHKEEVALEESKYFRKNIHKINSVDQLFKDRRLLDYVLQSFSITPKYISL 180

Query: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240
           PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY
Sbjct: 181 PFLKDVLTLGLANPKKYFIESRDNRFRAMAENFRFQPDGSLSKRDKILTDMQIEKIVSNY 240

Query: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM 300
           FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM
Sbjct: 241 FNNTIDCVPIVSDQNYYKLAINSVSSFSDFLKDPKLFKMLQLSLFPLNPEITADKFLTLM 300

Query: 301 QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY 360
           QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY
Sbjct: 301 QENDPIVSQVKYFFQINFHRDNSSSTKIQQDSQIQKMLDLYKKNCQILHDDKMQSLIKDY 360

Query: 361 QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP 420
           QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP
Sbjct: 361 QLPLGKIKSIDNLLSGKCQLEGPNSAEEPIITLQFALDAYNLNMQDLDRDQLRNVLTSNP 420

Query: 421 SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE 480
           SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE
Sbjct: 421 SDPDSYANKSKDDRLIKLNHAFNFNADGSIGPIPMMQSRLTIRDNVKHYANRKRSIHDAE 480

Query: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540
           NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK
Sbjct: 481 NKSFNSMEQISTQKRINLEINSEVDYYTLNINTIHSFEELLANKRILNFLLESKGIDSQK 540

Query: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600
           VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD
Sbjct: 541 VREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFDIHGELSHKKIGKVQDNFHIDD 600

Query: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660
           TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF
Sbjct: 601 TCDLYKHQMIEKKEEEKDPNIALALYFKRTIPNIRNHYEILGDSKLFKVVSKKLKLSPYF 660

Query: 661 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN 720
           AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN
Sbjct: 661 AVLPERKKIRILKKHIKINDFKDSKKVEDFLYAAKAMDHQSIDYKKALFSSPNQNKDPWN 720

Query: 721 NSFDDPQNNVSLQLSPQKKSNGRFSILNLF 750
           NSFDDPQNNVSLQLSPQKKSNGRFSILNLF
Sbjct: 721 NSFDDPQNNVSLQLSPQKKSNGRFSILNLF 750


>gi|254780997|ref|YP_003065410.1| hypothetical protein CLIBASIA_04490 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 78

 Score = 25.4 bits (54), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 141 SKYFRKNIHKINSVDQ--LFKDRRLLDYVLQSFSITPKYISLPFLKDVLTLGLANP 194
           S ++      + SVDQ  L   ++ L Y+L    + P     PFL D   LGL +P
Sbjct: 22  SGFYAIRFSLLRSVDQSLLPPWQQFLFYLLPVAVLVPFISFFPFLIDAFALGLQDP 77


>gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score = 23.9 bits (50), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 549 IFKSDLKDPKSFAN--TYKDNRYKEIISSFNFDIHG 582
           +   D+KDP        Y D R +E+  S +FD+ G
Sbjct: 28  VIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDG 63


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 702

 Score = 23.9 bits (50), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 520 LLANKRILNFLLESKGIDSQKVREDFLCEIFKSDLKDPKSFANTYKDNRYKEIISSFNFD 579
           LL+ KRI   L     I+ +K RE          L+    +     + R   +IS F   
Sbjct: 590 LLSAKRIFQIL----AIEEKKNRE--------ISLEISPQYLLLEAEKRLYAVISDFGTH 637

Query: 580 IHGELSHKKIGKVQDNFH-IDDTCDLYKHQMIEKKE--EEKDPNIALALYFKRTIPNIRN 636
           I   + HK+  ++ D  H I +  +++  Q++   +  E +D  ++L  Y K  I  + N
Sbjct: 638 IQESMDHKRYHQIGDLLHSICEPIEIFFDQVLVNVDDREVRDNRLSLLQYIKNIILIVIN 697

Query: 637 HYEIL 641
             +I+
Sbjct: 698 VQKIV 702


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,652
Number of Sequences: 1233
Number of extensions: 22114
Number of successful extensions: 95
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 14
length of query: 750
length of database: 328,796
effective HSP length: 81
effective length of query: 669
effective length of database: 228,923
effective search space: 153149487
effective search space used: 153149487
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)