Query gi|254781010|ref|YP_003065423.1| hypothetical protein CLIBASIA_04560 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 195
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 20:14:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781010.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2qne_A Putative methyltransfe 32.9 5.9 0.00018 19.4 -1.3 35 159-193 117-151 (174)
2 >2grj_A Dephospho-COA kinase; 32.7 25 0.00074 15.6 1.9 32 60-93 75-106 (126)
3 >1q0v_A Hydrophilic protein; h 18.8 49 0.0014 13.9 1.2 27 62-88 10-36 (81)
4 >1u2z_A Histone-lysine N-methy 16.2 66 0.002 13.1 1.4 41 37-77 47-87 (104)
5 >1t46_A HOMO sapiens V-KIT har 15.2 73 0.0022 12.8 1.5 41 1-49 63-103 (108)
6 >1w8k_A Apical membrane antige 12.2 52 0.0015 13.7 -0.1 17 56-72 23-39 (55)
7 >2ohf_A Protein OLA1, GTP-bind 12.0 79 0.0023 12.6 0.8 35 153-194 9-43 (70)
8 >3jvf_C Interleukin-17 recepto 11.3 96 0.0028 12.1 1.6 11 167-177 73-83 (123)
9 >2uy1_A Cleavage stimulation f 10.4 63 0.0019 13.2 -0.1 38 139-177 170-207 (216)
10 >1chl_A Chlorotoxin; neurotoxi 7.6 1.1E+02 0.0033 11.7 0.3 7 174-180 25-31 (36)
No 1
>>2qne_A Putative methyltransferase; ZP_00558420.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Desulfitobacterium hafniense Y51} (A:114-181,A:366-471)
Probab=32.91 E-value=5.9 Score=19.37 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 87320122332211012211431003684146431
Q gi|254781010|r 159 LPDHQVDRNHTLSNLRGACYQPSLVSNSSLKLWDV 193 (195)
Q Consensus 159 lpdhqvdrnhtlsnlrgacyqpslvsnsslklwdv 193 (195)
...|-....||+.+.|.+-|+|.|..+.+..-|.-
T Consensus 117 pgGHfLg~~HT~~~~~taf~~P~l~Dr~~~e~W~~ 151 (174)
T 2qne_A 117 PGGHFLTQKHTRKNHKREFYTPTLSDRSAYDTWAK 151 (174)
T ss_dssp TTCCSTTSHHHHHHHHHHCCCCSSCCCCCHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99988897899989755024885534359888983
No 2
>>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} (A:1-43,A:110-192)
Probab=32.70 E-value=25 Score=15.64 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCC
Q ss_conf 2677787667641231332036788723302456
Q gi|254781010|r 60 KTEVKRDIRRASRLSLEEKSKNADKPTVIENQAD 93 (195)
Q Consensus 60 ktevkrdirrasrlsleeksknadkptvienqad 93 (195)
.+.++|-+.|-+.+|.|||.+.|| .||+|..+
T Consensus 75 e~riqRLm~RdsQ~s~eeK~~~AD--~VIdNngs 106 (126)
T 2grj_A 75 ETILKRNREADRRLKFQEDIVPQG--IVVANNST 106 (126)
T ss_dssp HHHHHHCSSHHHHHTTCTTCCCCS--EEEECSSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCC--EEEECCCC
T ss_conf 999999999997824667899799--99989999
No 3
>>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} (A:)
Probab=18.82 E-value=49 Score=13.90 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHCCHHHHCCCCCCCEEE
Q ss_conf 777876676412313320367887233
Q gi|254781010|r 62 EVKRDIRRASRLSLEEKSKNADKPTVI 88 (195)
Q Consensus 62 evkrdirrasrlsleeksknadkptvi 88 (195)
..--|++||-+|||+|-.-......++
T Consensus 10 ~~dedL~rAIeLSL~e~~~~~~~~~~~ 36 (81)
T 1q0v_A 10 DEEELIRKAIELSLKESRNSASSEPIV 36 (81)
T ss_dssp SHHHHHHHHHHHHHHCCCCCSCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 732999999998799864788999888
No 4
>>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} (A:71-174)
Probab=16.16 E-value=66 Score=13.10 Aligned_cols=41 Identities=15% Similarity=-0.017 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCHHH
Q ss_conf 77999999998614887512664267778766764123133
Q gi|254781010|r 37 NTIKKSINRVIQENNKPRNMTIFKTEVKRDIRRASRLSLEE 77 (195)
Q Consensus 37 ntikksinrviqennkprnmtifktevkrdirrasrlslee 77 (195)
.-|.|.+.-|.|.---..--..|.+++.|.+|||...+=+.
T Consensus 47 ~eI~kvie~v~~~Ylpe~~~~~f~~~i~r~L~rA~~~~d~~ 87 (104)
T 1u2z_A 47 SEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTK 87 (104)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCCHH
T ss_conf 99999999999973974024773786511036640569879
No 5
>>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} (A:109-193,A:291-313)
Probab=15.19 E-value=73 Score=12.82 Aligned_cols=41 Identities=34% Similarity=0.639 Sum_probs=23.9
Q ss_pred CCCCCEEEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9876168302147435202435320256654224567799999999861
Q gi|254781010|r 1 MKSKNILIVSTLVICVLSISSCDLGDSIAKKRNTIGNTIKKSINRVIQE 49 (195)
Q Consensus 1 mksknilivstlvicvlsisscdlgdsiakkrntigntikksinrviqe 49 (195)
.|..|||+-+..++.+ ||.| .|+||.|... |-.-|..-|.|
T Consensus 63 LKp~NILi~~~~~vKI-----~DFG--lAR~~~~~~~-~~~~~~~~~~~ 103 (108)
T 1t46_A 63 LAARNILLTHGRITKI-----CDFG--LARKRPTFKQ-IVQLIEKQISE 103 (108)
T ss_dssp CSGGGEEEETTTEEEE-----CCCG--GGSGSCCHHH-HHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCC-----CCCH--HEEHCCCHHH-HHHHHHHHHHC
T ss_conf 5423434122565333-----5530--2037929999-99999987412
No 6
>>1w8k_A Apical membrane antigen 1; plasmodium antigen, malaria vaccine candidate; 1.8A {Plasmodium vivax} PDB: 1w81_A 2j4w_D (A:1-22,A:348-380)
Probab=12.21 E-value=52 Score=13.72 Aligned_cols=17 Identities=41% Similarity=0.868 Sum_probs=11.3
Q ss_pred EEEEHHHHHHHHHHHHH
Q ss_conf 26642677787667641
Q gi|254781010|r 56 MTIFKTEVKRDIRRASR 72 (195)
Q Consensus 56 mtifktevkrdirrasr 72 (195)
..|+|.|..|.|+..||
T Consensus 23 csiykde~ere~~kqsr 39 (55)
T 1w8k_A 23 CSIYKDEIEREIKKQSR 39 (55)
T ss_dssp TTHHHHHHHHHHTTC--
T ss_pred CEECCCCCCCCCCCHHC
T ss_conf 51134664565521110
No 7
>>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} (A:52-100,A:304-324)
Probab=11.97 E-value=79 Score=12.63 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=24.2
Q ss_pred EEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 454204873201223322110122114310036841464312
Q gi|254781010|r 153 DIAIENLPDHQVDRNHTLSNLRGACYQPSLVSNSSLKLWDVA 194 (195)
Q Consensus 153 diaienlpdhqvdrnhtlsnlrgacyqpslvsnsslklwdva 194 (195)
.+++-..||-..|. ...||+|.-+-.+.++++|+|
T Consensus 9 N~gvV~VPD~RLd~-------L~~~~~pkk~VPA~ie~vDIA 43 (70)
T 2ohf_A 9 NESRVPVPDERFDF-------LCQYHKPASKIPAFLNVVDIA 43 (70)
T ss_dssp SEEEEECCCHHHHH-------HHHHHCCSEEECCEEEEEECC
T ss_pred EEEEEECCCHHHHH-------HHHHCCCCCCCCEEEEEEECC
T ss_conf 26788468521667-------876427775221279998447
No 8
>>3jvf_C Interleukin-17 receptor A; cytokine, cysteine-knot growth factor, receptor-cytokine complex, alternative splicing, disulfide bond, glycoprotein; HET: MLY NAG; 3.30A {Homo sapiens} (C:164-286)
Probab=11.34 E-value=96 Score=12.14 Aligned_cols=11 Identities=55% Similarity=1.029 Sum_probs=7.3
Q ss_pred CCCHHHCCCCC
Q ss_conf 33221101221
Q gi|254781010|r 167 NHTLSNLRGAC 177 (195)
Q Consensus 167 nhtlsnlrgac 177 (195)
-.+|++.+|+|
T Consensus 73 t~~l~~~~~cc 83 (123)
T 3jvf_C 73 TLTLRNLKGCC 83 (123)
T ss_dssp EECCCCCTTCC
T ss_pred EEECCCCCCCC
T ss_conf 99626552000
No 9
>>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B (A:169-316,A:426-493)
Probab=10.39 E-value=63 Score=13.24 Aligned_cols=38 Identities=39% Similarity=0.489 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCC
Q ss_conf 373310146321134542048732012233221101221
Q gi|254781010|r 139 NLPDLKSNHQASEIDIAIENLPDHQVDRNHTLSNLRGAC 177 (195)
Q Consensus 139 nlpdlksnhqaseidiaienlpdhqvdrnhtlsnlrgac 177 (195)
|.-|||-.....-.|--.||||.-. ..|..|||||-.-
T Consensus 170 nfldlkirdnsrlldefmenlpkis-qqnnvlsnlrvek 207 (216)
T 2uy1_A 170 NFLDLKIRDNSRLLDEFMENLPKIS-QQNNVLSNLRVEK 207 (216)
T ss_dssp CBTTBCCCCTTCCCTTTTC--------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf 9997748114999999999999876-4688998635999
No 10
>>1chl_A Chlorotoxin; neurotoxin; NMR {Leiurus quinquestriatus} (A:)
Probab=7.63 E-value=1.1e+02 Score=11.70 Aligned_cols=7 Identities=71% Similarity=1.749 Sum_probs=0.0
Q ss_pred CCCCCCC
Q ss_conf 1221143
Q gi|254781010|r 174 RGACYQP 180 (195)
Q Consensus 174 rgacyqp 180 (195)
||.||.|
T Consensus 25 rgkcygp 31 (36)
T 1chl_A 25 RGKCYGP 31 (36)
T ss_dssp SCEEETT
T ss_pred CCCCCCC
T ss_conf 8667485
Done!