Query gi|254781010|ref|YP_003065423.1| hypothetical protein CLIBASIA_04560 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 195
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 23:22:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781010.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qne_A Putative methyltransfer 20.0 10 0.00042 17.1 -1.3 31 161-191 416-446 (495)
2 1q0v_A Hydrophilic protein; ha 17.6 27 0.0011 14.6 0.4 18 63-80 11-28 (81)
3 2xgl_A Colicin-M immunity prot 9.4 79 0.0033 11.7 2.4 29 60-88 18-47 (103)
4 2kzf_A RBFA, ribosome-binding 9.2 73 0.0031 11.9 0.6 38 33-70 9-50 (106)
5 2klz_A Ataxin-3; UIM, ubiquiti 7.4 97 0.0041 11.2 0.7 20 64-83 27-46 (52)
6 2jt1_A PEFI protein; solution 7.2 79 0.0033 11.7 0.1 37 36-75 2-38 (77)
7 1ikn_C P50D, protein (NF-kappa 6.3 54 0.0023 12.7 -1.2 14 10-23 2-15 (119)
8 2pzz_A UPF0201 protein MJ1564; 6.2 52 0.0022 12.8 -1.3 20 54-75 77-96 (147)
9 1jgn_B PAIP2, polyadenylate-bi 5.9 1.2E+02 0.0049 10.7 0.4 10 101-110 2-11 (26)
10 2kz0_A BOLA family protein; BO 5.7 1.2E+02 0.005 10.7 1.1 18 53-70 1-18 (76)
No 1
>2qne_A Putative methyltransferase; ZP_00558420.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Desulfitobacterium hafniense Y51}
Probab=19.98 E-value=10 Score=17.08 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=17.6
Q ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCEEEE
Q ss_conf 3201223322110122114310036841464
Q gi|254781010|r 161 DHQVDRNHTLSNLRGACYQPSLVSNSSLKLW 191 (195)
Q Consensus 161 dhqvdrnhtlsnlrgacyqpslvsnsslklw 191 (195)
.|-....||+.+.|.+-|+|.|...++..-|
T Consensus 416 GhfLg~~hT~~~~~~~~~~P~l~dr~~~e~W 446 (495)
T 2qne_A 416 GHFLTQKHTRKNHKREFYTPTLSDRSAYDTW 446 (495)
T ss_dssp CCSTTSHHHHHHHHHHCCCCSSCCCCCHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 9888978999998643168855343497889
No 2
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=17.57 E-value=27 Score=14.55 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=14.1
Q ss_pred HHHHHHHHHHCCHHHHCC
Q ss_conf 778766764123133203
Q gi|254781010|r 63 VKRDIRRASRLSLEEKSK 80 (195)
Q Consensus 63 vkrdirrasrlsleeksk 80 (195)
---|+|||-.|||+|-.-
T Consensus 11 ~DEDLrrAlelSLeEs~~ 28 (81)
T 1q0v_A 11 EEELIRKAIELSLKESRN 28 (81)
T ss_dssp HHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHHHCC
T ss_conf 269999999987998646
No 3
>2xgl_A Colicin-M immunity protein; antibiotic, bacterial cell WALL, bacteriocin immunity, bacte immunity; 2.70A {Escherichia coli}
Probab=9.42 E-value=79 Score=11.72 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred HHHHHHH-HHHHHHCCHHHHCCCCCCCEEE
Q ss_conf 2677787-6676412313320367887233
Q gi|254781010|r 60 KTEVKRD-IRRASRLSLEEKSKNADKPTVI 88 (195)
Q Consensus 60 ktevkrd-irrasrlsleeksknadkptvi 88 (195)
-+.|||| +.|-.|-..+.|.-..++|.|.
T Consensus 18 aa~VKrDflqRI~RW~~Dkk~LGt~~PvVa 47 (103)
T 2xgl_A 18 RTFVKNDYLQRMKRWDNDVQLLGTEIPKIT 47 (103)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTCSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 999989999862323420553498998289
No 4
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-2, protein struc initiative; NMR {Thermotoga maritima}
Probab=9.20 E-value=73 Score=11.94 Aligned_cols=38 Identities=26% Similarity=0.429 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC--C--EEEEHHHHHHHHHHH
Q ss_conf 2456779999999986148875--1--266426777876676
Q gi|254781010|r 33 NTIGNTIKKSINRVIQENNKPR--N--MTIFKTEVKRDIRRA 70 (195)
Q Consensus 33 ntigntikksinrviqennkpr--n--mtifktevkrdirra 70 (195)
.-++..|++.|...+++...|+ + .||-+.++..|.+.|
T Consensus 9 ~rv~~~i~~~is~il~~i~dp~l~~~~VtIt~V~~S~Dl~~A 50 (106)
T 2kzf_A 9 AMLESEIQKLLMEALQQLRDPRLKKDFVTFSRVELSKDKRYA 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCCGGGCCEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCEE
T ss_conf 999999999999999985484446864899599989998627
No 5
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=7.37 E-value=97 Score=11.19 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=16.0
Q ss_pred HHHHHHHHHCCHHHHCCCCC
Q ss_conf 78766764123133203678
Q gi|254781010|r 64 KRDIRRASRLSLEEKSKNAD 83 (195)
Q Consensus 64 krdirrasrlsleeksknad 83 (195)
..|.|||-.||....|.|-.
T Consensus 27 eaDLrRAIqlSMQGss~n~e 46 (52)
T 2klz_A 27 EADLRRAIQLSMQGSSRNLE 46 (52)
T ss_dssp HHHHHHHHHHHHTTCCSCCC
T ss_pred HHHHHHHHHHHHCCCCCCCC
T ss_conf 88899999987215777732
No 6
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcription regulatory protein, plasmid, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=7.24 E-value=79 Score=11.70 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCH
Q ss_conf 6779999999986148875126642677787667641231
Q gi|254781010|r 36 GNTIKKSINRVIQENNKPRNMTIFKTEVKRDIRRASRLSL 75 (195)
Q Consensus 36 gntikksinrviqennkprnmtifktevkrdirrasrlsl 75 (195)
++.|-..|-+.+||.+..++-.-.|| |||-.|..||.
T Consensus 2 ~~~~~~kIis~m~er~~~~~~~Pvkt---R~IADaaglsi 38 (77)
T 2jt1_A 2 SESIVTKIISIVQERQNMDDGAPVKT---RDIADAAGLSI 38 (77)
T ss_dssp CCTHHHHHHHHHHHHHHHHTTSCEEH---HHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHCCCH
T ss_conf 42689999999999863577897213---33343424209
No 7
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=6.25 E-value=54 Score=12.70 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=9.6
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 21474352024353
Q gi|254781010|r 10 STLVICVLSISSCD 23 (195)
Q Consensus 10 stlvicvlsisscd 23 (195)
|.|.||-+|..||-
T Consensus 2 ~~L~I~r~s~~s~s 15 (119)
T 1ikn_C 2 SNLKIVRMDRTAGC 15 (119)
T ss_dssp CCCCEEEESCSEEE
T ss_pred CCCEEEEECCCCEE
T ss_conf 97799983188230
No 8
>2pzz_A UPF0201 protein MJ1564; methanococcus jannaschii, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Methanocaldococcus jannaschii DSM2661} SCOP: d.77.1.2
Probab=6.24 E-value=52 Score=12.82 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=8.5
Q ss_pred CCEEEEHHHHHHHHHHHHHCCH
Q ss_conf 5126642677787667641231
Q gi|254781010|r 54 RNMTIFKTEVKRDIRRASRLSL 75 (195)
Q Consensus 54 rnmtifktevkrdirrasrlsl 75 (195)
.|.|.|. +.+.---+.++++
T Consensus 77 ~~~t~F~--lnKQAAf~GkVsf 96 (147)
T 2pzz_A 77 ENATKFY--LNKQAAYVGAVNF 96 (147)
T ss_dssp SSEEEEE--ECHHHHHTTCCCC
T ss_pred CCEEEEE--EECHHHHCCCCCC
T ss_conf 9989999--8505865873023
No 9
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=5.87 E-value=1.2e+02 Score=10.70 Aligned_cols=10 Identities=60% Similarity=0.939 Sum_probs=6.1
Q ss_pred EECCCCCCCC
Q ss_conf 8416788763
Q gi|254781010|r 101 VATNLNPNHQ 110 (195)
Q Consensus 101 vatnlnpnhq 110 (195)
|..|||||..
T Consensus 2 vksnlnpnak 11 (26)
T 1jgn_B 2 VKSNLNPNAK 11 (26)
T ss_dssp CCCSSCTTCC
T ss_pred CCCCCCCCHH
T ss_conf 3366898853
No 10
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=5.75 E-value=1.2e+02 Score=10.66 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=14.4
Q ss_pred CCCEEEEHHHHHHHHHHH
Q ss_conf 751266426777876676
Q gi|254781010|r 53 PRNMTIFKTEVKRDIRRA 70 (195)
Q Consensus 53 prnmtifktevkrdirra 70 (195)
|.+|++-+.+++.-|+.+
T Consensus 1 p~~m~~~~~~Ie~~l~~~ 18 (76)
T 2kz0_A 1 PGSMTVTQSQLELLIRNA 18 (76)
T ss_dssp CCCSSCTTHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
T ss_conf 998877899999999955
Done!