Query gi|254781010|ref|YP_003065423.1| hypothetical protein CLIBASIA_04560 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 195
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:03:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781010.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dyja1 d.52.7.1 (A:4-94) Ribo 8.8 46 0.0033 11.7 0.7 36 35-70 5-42 (91)
2 d1ml9a_ b.85.7.1 (A:) Dim-5 {F 5.9 51 0.0037 11.4 -0.2 22 42-64 114-135 (284)
3 d1my7a_ b.1.18.1 (A:) p65 subu 5.5 37 0.0027 12.3 -1.2 14 10-23 2-15 (107)
4 d1gjia1 b.1.18.1 (A:182-281) p 5.1 41 0.003 12.0 -1.1 14 10-23 2-15 (100)
5 d1mvha_ b.85.7.1 (A:) SET doma 4.6 55 0.004 11.2 -0.8 22 42-64 125-146 (269)
6 d1josa_ d.52.7.1 (A:) Ribosome 4.5 83 0.0061 10.2 0.9 37 34-70 4-43 (100)
7 d2etda1 a.29.9.1 (A:35-183) Hy 4.3 66 0.0048 10.8 -0.6 16 114-129 77-92 (149)
8 d1nvpd1 a.32.1.1 (D:3-53) Smal 4.1 90 0.0066 9.9 2.4 26 31-56 5-30 (51)
9 d1nr0a2 b.69.4.1 (A:313-611) A 4.1 91 0.0066 9.9 1.5 11 185-195 289-299 (299)
10 d1nh2d1 a.32.1.1 (D:5-54) Smal 3.9 95 0.0069 9.8 2.6 26 31-56 7-32 (50)
No 1
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]}
Probab=8.84 E-value=46 Score=11.70 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHCCCCC--CEEEEHHHHHHHHHHH
Q ss_conf 56779999999986148875--1266426777876676
Q gi|254781010|r 35 IGNTIKKSINRVIQENNKPR--NMTIFKTEVKRDIRRA 70 (195)
Q Consensus 35 igntikksinrviqennkpr--nmtifktevkrdirra 70 (195)
+.-.|++.|...|++...|+ ..||-+.++-.|.+.|
T Consensus 5 le~~i~r~is~il~~~~d~~~~~vtIt~V~~S~Dl~~a 42 (91)
T d2dyja1 5 LEAQLKRALAEEIQALEDPRLFLLTVEAVRLSKDGSVL 42 (91)
T ss_dssp HHHHHHHHHHHHHHTCCCGGGTTCEEEEEEECTTSSEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCE
T ss_conf 99999999999999806866594599799988980037
No 2
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}
Probab=5.94 E-value=51 Score=11.41 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=16.4
Q ss_pred HHHHHHHHCCCCCCEEEEHHHHH
Q ss_conf 99999861488751266426777
Q gi|254781010|r 42 SINRVIQENNKPRNMTIFKTEVK 64 (195)
Q Consensus 42 sinrviqennkprnmtifktevk 64 (195)
-.|||+|..-+++ +.||+|+.|
T Consensus 114 C~Nr~~q~g~~~~-lev~kt~~k 135 (284)
T d1ml9a_ 114 CPNRVVERGRTVP-LQIFRTKDR 135 (284)
T ss_dssp CTTCHHHHCCCSC-EEEEECSSS
T ss_pred CCCEECCCCCCCC-EEEEECCCC
T ss_conf 8982243898457-799985897
No 3
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.52 E-value=37 Score=12.27 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=9.8
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 21474352024353
Q gi|254781010|r 10 STLVICVLSISSCD 23 (195)
Q Consensus 10 stlvicvlsisscd 23 (195)
|.|.||-+|..||-
T Consensus 2 ~~L~I~r~s~~s~s 15 (107)
T d1my7a_ 2 AELKICRVNRRSGS 15 (107)
T ss_dssp CSCCEEEESCSEEE
T ss_pred CCCEEEECCCCCEE
T ss_conf 85589982477201
No 4
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]}
Probab=5.08 E-value=41 Score=11.98 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=9.0
Q ss_pred HHHHHHHHCCCCCC
Q ss_conf 21474352024353
Q gi|254781010|r 10 STLVICVLSISSCD 23 (195)
Q Consensus 10 stlvicvlsisscd 23 (195)
+.|.||-+|..||-
T Consensus 2 ~~L~I~r~s~~s~s 15 (100)
T d1gjia1 2 AELRICRVNKNCGS 15 (100)
T ss_dssp SCCCEEEESCSEEE
T ss_pred CCCEEEEECCCCEE
T ss_conf 85389981387211
No 5
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=4.56 E-value=55 Score=11.23 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=15.8
Q ss_pred HHHHHHHHCCCCCCEEEEHHHHH
Q ss_conf 99999861488751266426777
Q gi|254781010|r 42 SINRVIQENNKPRNMTIFKTEVK 64 (195)
Q Consensus 42 sinrviqennkprnmtifktevk 64 (195)
-.|||+|..-+++ +.||+|..+
T Consensus 125 C~Nr~~q~g~~~~-leV~~t~~~ 146 (269)
T d1mvha_ 125 CPNRVVQRGRTLP-LEIFKTKEK 146 (269)
T ss_dssp CTTCTGGGCCCSC-EEEEECSSS
T ss_pred CCCEECCCCCCCC-EEEEECCCC
T ss_conf 9784647888348-799980787
No 6
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=4.50 E-value=83 Score=10.15 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHH-HCCCCC--CEEEEHHHHHHHHHHH
Q ss_conf 456779999999986-148875--1266426777876676
Q gi|254781010|r 34 TIGNTIKKSINRVIQ-ENNKPR--NMTIFKTEVKRDIRRA 70 (195)
Q Consensus 34 tigntikksinrviq-ennkpr--nmtifktevkrdirra 70 (195)
-++..|++.|..+++ +-..|+ +.||-..++-.|.+.|
T Consensus 4 rv~~~i~~~is~il~~~i~d~~l~~vtIt~V~~S~Dl~~A 43 (100)
T d1josa_ 4 RVAQEIQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYA 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTTTCCEEEEEEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEE
T ss_conf 9999999999999997565866680589899976983427
No 7
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=4.27 E-value=66 Score=10.77 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=9.2
Q ss_pred EEEEECCCCCCCCCCC
Q ss_conf 3353103733101463
Q gi|254781010|r 114 IDIAIENLPDLKSNHQ 129 (195)
Q Consensus 114 idiaienlpdlksnhq 129 (195)
+-...|+.||||++-.
T Consensus 77 l~~~~E~yP~Lka~~~ 92 (149)
T d2etda1 77 LLAIAENYPNLKADAN 92 (149)
T ss_dssp HHHHHTTCHHHHHCHH
T ss_pred HHHHHHHCCCCCCHHH
T ss_conf 9999871665344088
No 8
>d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.10 E-value=90 Score=9.94 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 42245677999999998614887512
Q gi|254781010|r 31 KRNTIGNTIKKSINRVIQENNKPRNM 56 (195)
Q Consensus 31 krntigntikksinrviqennkprnm 56 (195)
.+.|+|++...++...|++..-+..+
T Consensus 5 R~sTlG~tL~dtLDeli~~~~I~p~L 30 (51)
T d1nvpd1 5 RNTTLGNSLQESLDELIQSQQITPQL 30 (51)
T ss_dssp GSSHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 10428888999999999859989999
No 9
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=4.07 E-value=91 Score=9.92 Aligned_cols=11 Identities=45% Similarity=1.223 Sum_probs=7.9
Q ss_pred CCCEEEEEECC
Q ss_conf 68414643129
Q gi|254781010|r 185 NSSLKLWDVAF 195 (195)
Q Consensus 185 nsslklwdvaf 195 (195)
...+++|||.|
T Consensus 289 D~~i~iWdl~~ 299 (299)
T d1nr0a2 289 DSNIKFWNVPF 299 (299)
T ss_dssp TSCEEEEECCC
T ss_pred CCEEEEEECCC
T ss_conf 99799994449
No 10
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.94 E-value=95 Score=9.82 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 42245677999999998614887512
Q gi|254781010|r 31 KRNTIGNTIKKSINRVIQENNKPRNM 56 (195)
Q Consensus 31 krntigntikksinrviqennkprnm 56 (195)
.+.|||++...++...|++..-+..+
T Consensus 7 R~stlG~~L~dtLDeli~~~~I~p~L 32 (50)
T d1nh2d1 7 RRSTIGNSLVDALDTLISDGRIEASL 32 (50)
T ss_dssp GGSHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 43438788999999999859989899
Done!