RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781010|ref|YP_003065423.1| hypothetical protein
CLIBASIA_04560 [Candidatus Liberibacter asiaticus str. psy62]
(195 letters)
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate and
acetyl-CoA. This enzyme performs the second of seven
steps in that pathway for catechol degradation.
Length = 481
Score = 29.3 bits (66), Expect = 0.69
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 69 RASRLSLE---EKSKNADKPTVIENQADNIN------IEVEVATNLNPNHQASEIDIA 117
A+R +L+ K A++ ++ AD I + EVA P AS +DI
Sbjct: 43 AAARAALKGPWGKMTVAERADLLYAVADEIERRFDDFLAAEVADTGKPRSLASHLDIP 100
>gnl|CDD|179522 PRK02998, prsA, peptidylprolyl isomerase; Reviewed.
Length = 283
Score = 28.8 bits (64), Expect = 0.93
Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 1 MKSKNILIVSTLVICVLSISSCDLGDSIAKKRNTIGNTIKKSINRVIQENNKPRNMTIFK 60
MK K + + + + VL++S+C D++ + +GN +K +++ +++ + ++
Sbjct: 1 MKKKKLFLGTIISCVVLALSACGSSDNVVTSK--VGNITEKELSKELRQKYGESTL--YQ 56
Query: 61 TEVKRDIRRASRLSLEEKSKNADKPTVIENQADNINIEVE 100
+ + + ++S EE K ++ + DN +E
Sbjct: 57 MVLSKALLDKYKVSDEEAKKQVEEAK--DKMGDNFKSTLE 94
>gnl|CDD|114945 pfam06253, MTTB, Trimethylamine methyltransferase (MTTB). This
family consists of several trimethylamine
methyltransferase (MTTB) (EC:2.1.1.-) proteins from
numerous Rhizobium and Methanosarcina species.
Length = 505
Score = 28.1 bits (63), Expect = 1.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 168 HTLSNLRGACYQPSLVSNSSLKLW 191
HTL+ + A YQP+L ++ + W
Sbjct: 434 HTLARYQTAFYQPALSDWNNFEQW 457
>gnl|CDD|178848 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 197
Score = 27.8 bits (63), Expect = 1.7
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 10/60 (16%)
Query: 43 INRVIQENNKPRNMTIFKTEVKRDIRRASRLSLEEKSKNADKPTVIENQADNINIEVEVA 102
+ R++ + ++ + E + AS++ EEK AD VI+N D + +V
Sbjct: 139 LERLMARDG----LS--EEEAEA--IIASQMPREEKLARADD--VIDNNGDLEELRKQVE 188
>gnl|CDD|162713 TIGR02122, TRAP_TAXI, TRAP transporter solute receptor, TAXI
family. This family is one of at least three major
families of extracytoplasmic solute receptor (ESR) for
TRAP (Tripartite ATP-independent Periplasmic
Transporter) transporters. The others are the DctP
(TIGR00787) and SmoM (pfam03480) families. These
transporters are secondary (driven by an ion gradient)
but composed of three polypeptides, although in some
species the 4-TM and 12-TM integral membrane proteins
are fused. Substrates for this transporter family are
not fully characterized but, besides C4 dicarboxylates,
may include mannitol and other compounds.
Length = 320
Score = 27.7 bits (62), Expect = 2.3
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 118 IENLPDLKSNHQASE---IDIAIENLP 141
ENL +LK H A++ ++ AI+ LP
Sbjct: 279 FENLDELKDAHPAAQDIALETAIKGLP 305
Score = 27.7 bits (62), Expect = 2.3
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 137 IENLPDLKSNHQASE---IDIAIENLP 160
ENL +LK H A++ ++ AI+ LP
Sbjct: 279 FENLDELKDAHPAAQDIALETAIKGLP 305
>gnl|CDD|132375 TIGR03332, salvage_mtnW, 2,3-diketo-5-methylthiopentyl-1-phosphate
enolase. Members of this family are the methionine
salvage pathway enzyme
2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a
homolog of RuBisCO. This protein family seems restricted
to Bacillus subtilis and close relatives, where two
separate proteins carry the enolase and phosphatase
activities that in other species occur in a single
protein, MtnC (TIGR01691).
Length = 407
Score = 27.1 bits (60), Expect = 3.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 43 INRVIQENNKPRNMTIFKTEVKRDI 67
I +++ + +P M+IFK + RD+
Sbjct: 130 IRKLLGVHERPLLMSIFKGMIGRDL 154
>gnl|CDD|162742 TIGR02171, Fb_sc_TIGR02171, Fibrobacter succinogenes paralogous
family TIGR02171. This model describes a paralogous
family of the rumen bacterium Fibrobacter succinogenes.
Eleven members are found in Fibrobacter succinogenes
S85, averaging over 900 amino acids in length. More than
half are predicted lipoproteins. The function is
unknown.
Length = 912
Score = 26.3 bits (58), Expect = 5.6
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 117 AIENLPDLKSNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDHQVDRNH 168
AI + LK + +E D N + + P D NH
Sbjct: 698 AIPHAKKLKY--------VVVELSLDFWWNTATEDTNAKYLLYPGFVYDENH 741
>gnl|CDD|139579 PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Provisional.
Length = 135
Score = 26.3 bits (58), Expect = 5.6
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 111 ASEIDIAIENLPDLKSNHQASEIDIAIENLPDLKSNHQA 149
A+ I L E+D AIE L KS
Sbjct: 94 AATIAEMEAQLA----GKVGDELDRAIERLDHFKSIQHQ 128
Score = 25.9 bits (57), Expect = 7.3
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 107 PNHQASEIDIAIENLPDLKSNHQA 130
E+D AIE L KS
Sbjct: 105 AGKVGDELDRAIERLDHFKSIQHQ 128
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 26.0 bits (57), Expect = 7.0
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 29 AKKRNTIGNTIKKSINRVIQENNKPRNMTIFKTEVKRDIRRASRLSLEEKSKNADKPTVI 88
KK I + + + +E + R + + +R +A + L + S N D P+
Sbjct: 346 RKKE--IAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPS-- 401
Query: 89 ENQADNINIEVEVATN 104
EN+ + AT
Sbjct: 402 ENEESKGSPPQVEATT 417
>gnl|CDD|150614 pfam09960, DUF2194, Uncharacterized protein conserved in bacteria
(DUF2194). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 573
Score = 25.9 bits (57), Expect = 7.9
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 112 SEIDIAIENLPDLKSNHQASEIDIAIENLPDLKS--NHQASEIDIAIENLPDH 162
S + I +N P L+ N SE A++ LK + ++++I ++N +
Sbjct: 494 SFLYIIKKNYPWLR-NMTGSEAANAVKRYFTLKPFIKYTDNKLEIDLKNFHNL 545
>gnl|CDD|150572 pfam09916, DUF2145, Uncharacterized protein conserved in bacteria
(DUF2145). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 200
Score = 25.7 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 164 VDRNHTLSNLRGACYQPSLVSNSSLKL 190
DR + LR A YQP + LK
Sbjct: 137 DDRAQAQAWLRLAYYQPQPLHIGPLKR 163
>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 458
Score = 25.8 bits (57), Expect = 8.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 94 NINIEVEVATNLNPNH 109
+++ EV V TNL+PNH
Sbjct: 182 DVSPEVAVVTNLSPNH 197
>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated.
Length = 256
Score = 25.5 bits (56), Expect = 8.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 1 MKSKNILIVSTLVICVLSISSC 22
+KS ++VS ++ VL +S C
Sbjct: 2 LKSYRAVLVSLSLLLVLVLSGC 23
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 25.7 bits (56), Expect = 9.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 29 AKKRNTIGNTIKKSINRVIQENNKPRNMTIFKTEVKRDIRRASRLSLE 76
AKK+ N I + N++I+++ K NM EV D R S L LE
Sbjct: 576 AKKQYKFYNQIIYNANKLIEQSKKIDNMI---DEVSADNNRLSTLPLE 620
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.312 0.128 0.347
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,857,601
Number of extensions: 169461
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 39
Length of query: 195
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 107
Effective length of database: 4,092,969
Effective search space: 437947683
Effective search space used: 437947683
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)