BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781010|ref|YP_003065423.1| hypothetical protein
CLIBASIA_04560 [Candidatus Liberibacter asiaticus str. psy62]
         (195 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781010|ref|YP_003065423.1| hypothetical protein CLIBASIA_04560 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 195

 Score =  389 bits (1000), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/195 (100%), Positives = 195/195 (100%)

Query: 1   MKSKNILIVSTLVICVLSISSCDLGDSIAKKRNTIGNTIKKSINRVIQENNKPRNMTIFK 60
           MKSKNILIVSTLVICVLSISSCDLGDSIAKKRNTIGNTIKKSINRVIQENNKPRNMTIFK
Sbjct: 1   MKSKNILIVSTLVICVLSISSCDLGDSIAKKRNTIGNTIKKSINRVIQENNKPRNMTIFK 60

Query: 61  TEVKRDIRRASRLSLEEKSKNADKPTVIENQADNINIEVEVATNLNPNHQASEIDIAIEN 120
           TEVKRDIRRASRLSLEEKSKNADKPTVIENQADNINIEVEVATNLNPNHQASEIDIAIEN
Sbjct: 61  TEVKRDIRRASRLSLEEKSKNADKPTVIENQADNINIEVEVATNLNPNHQASEIDIAIEN 120

Query: 121 LPDLKSNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDHQVDRNHTLSNLRGACYQP 180
           LPDLKSNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDHQVDRNHTLSNLRGACYQP
Sbjct: 121 LPDLKSNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDHQVDRNHTLSNLRGACYQP 180

Query: 181 SLVSNSSLKLWDVAF 195
           SLVSNSSLKLWDVAF
Sbjct: 181 SLVSNSSLKLWDVAF 195


>gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 200

 Score = 28.5 bits (62), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 4  KNILIVSTLVICVLSISSCDLGDS 27
          K + IVS L+  VL +S+CD  DS
Sbjct: 11 KKLGIVSVLIPVVLGVSNCDHSDS 34


>gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 384

 Score = 22.7 bits (47), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 2   KSKNILIVSTLVICVLSISSCDLG 25
           KS+  L VS+ V C L+ S C  G
Sbjct: 111 KSRGTLCVSSQVGCSLTCSFCYTG 134


>gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 673

 Score = 21.9 bits (45), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 73  LSLEEKSKNADKPTVIENQADN-INIEVEVATNLNPNHQASEIDIAIENLPD--LKSNHQ 129
           L LEE+   ++ P ++ N  +  +NI+  V  +L  N    E D  +  L D  +K+ H+
Sbjct: 365 LKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVKTAHK 424

Query: 130 AS 131
            +
Sbjct: 425 TA 426


>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 467

 Score = 21.6 bits (44), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 16/65 (24%), Positives = 28/65 (43%)

Query: 90  NQADNINIEVEVATNLNPNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDLKSNHQA 149
           N   N+ +   +A  L     A +ID  +   PD+  +  +    +   N  + K +HQ 
Sbjct: 63  NGTKNVKVNTPIAAILQEGETALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDHQK 122

Query: 150 SEIDI 154
           S+ DI
Sbjct: 123 SKNDI 127


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.312    0.128    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,767
Number of Sequences: 1233
Number of extensions: 4436
Number of successful extensions: 22
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 13
length of query: 195
length of database: 328,796
effective HSP length: 69
effective length of query: 126
effective length of database: 243,719
effective search space: 30708594
effective search space used: 30708594
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 36 (18.5 bits)