BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781010|ref|YP_003065423.1| hypothetical protein CLIBASIA_04560 [Candidatus Liberibacter asiaticus str. psy62] (195 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781010|ref|YP_003065423.1| hypothetical protein CLIBASIA_04560 [Candidatus Liberibacter asiaticus str. psy62] Length = 195 Score = 389 bits (1000), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/195 (100%), Positives = 195/195 (100%) Query: 1 MKSKNILIVSTLVICVLSISSCDLGDSIAKKRNTIGNTIKKSINRVIQENNKPRNMTIFK 60 MKSKNILIVSTLVICVLSISSCDLGDSIAKKRNTIGNTIKKSINRVIQENNKPRNMTIFK Sbjct: 1 MKSKNILIVSTLVICVLSISSCDLGDSIAKKRNTIGNTIKKSINRVIQENNKPRNMTIFK 60 Query: 61 TEVKRDIRRASRLSLEEKSKNADKPTVIENQADNINIEVEVATNLNPNHQASEIDIAIEN 120 TEVKRDIRRASRLSLEEKSKNADKPTVIENQADNINIEVEVATNLNPNHQASEIDIAIEN Sbjct: 61 TEVKRDIRRASRLSLEEKSKNADKPTVIENQADNINIEVEVATNLNPNHQASEIDIAIEN 120 Query: 121 LPDLKSNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDHQVDRNHTLSNLRGACYQP 180 LPDLKSNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDHQVDRNHTLSNLRGACYQP Sbjct: 121 LPDLKSNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDHQVDRNHTLSNLRGACYQP 180 Query: 181 SLVSNSSLKLWDVAF 195 SLVSNSSLKLWDVAF Sbjct: 181 SLVSNSSLKLWDVAF 195 >gi|255764500|ref|YP_003064987.2| hypothetical protein CLIBASIA_02305 [Candidatus Liberibacter asiaticus str. psy62] Length = 200 Score = 28.5 bits (62), Expect = 0.081, Method: Compositional matrix adjust. Identities = 12/24 (50%), Positives = 16/24 (66%) Query: 4 KNILIVSTLVICVLSISSCDLGDS 27 K + IVS L+ VL +S+CD DS Sbjct: 11 KKLGIVSVLIPVVLGVSNCDHSDS 34 >gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str. psy62] Length = 384 Score = 22.7 bits (47), Expect = 4.5, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 2 KSKNILIVSTLVICVLSISSCDLG 25 KS+ L VS+ V C L+ S C G Sbjct: 111 KSRGTLCVSSQVGCSLTCSFCYTG 134 >gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 673 Score = 21.9 bits (45), Expect = 7.9, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 73 LSLEEKSKNADKPTVIENQADN-INIEVEVATNLNPNHQASEIDIAIENLPD--LKSNHQ 129 L LEE+ ++ P ++ N + +NI+ V +L N E D + L D +K+ H+ Sbjct: 365 LKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVKTAHK 424 Query: 130 AS 131 + Sbjct: 425 TA 426 >gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 467 Score = 21.6 bits (44), Expect = 9.6, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 90 NQADNINIEVEVATNLNPNHQASEIDIAIENLPDLKSNHQASEIDIAIENLPDLKSNHQA 149 N N+ + +A L A +ID + PD+ + + + N + K +HQ Sbjct: 63 NGTKNVKVNTPIAAILQEGETALDIDKMLLEKPDVAISPSSKNTTLVFSNEDNDKVDHQK 122 Query: 150 SEIDI 154 S+ DI Sbjct: 123 SKNDI 127 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.312 0.128 0.347 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 115,767 Number of Sequences: 1233 Number of extensions: 4436 Number of successful extensions: 22 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 13 length of query: 195 length of database: 328,796 effective HSP length: 69 effective length of query: 126 effective length of database: 243,719 effective search space: 30708594 effective search space used: 30708594 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 36 (18.5 bits)