HHsearch alignment for GI: 254781011 and conserved domain: TIGR00201
>TIGR00201 comF comF family protein; InterPro: IPR005222 Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system ..
Probab=97.59 E-value=2e-05 Score=56.26 Aligned_cols=107 Identities=25% Similarity=0.303 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHH---HCCCCCCCEEEEEC-------CCHHHHHHHHHHHCCCCE-------EEEECCC--CCCHHH-
Q ss_conf 999999999998664---21756667899822-------312578899985158717-------8763156--420110-
Q gi|254781011|r 57 ARSMIMDLTAKTVLR---NIGFESIDIIAGGE-------TAGIPFATLLAERLNLPM-------IYVRKKS--KKHGQK- 116 (228)
Q Consensus 57 ~~~~i~~~~~~~i~~---~~~~~~~d~I~G~a-------~~Gip~a~~iA~~l~~p~-------~~vRK~~--K~hG~~- 116 (228)
T Consensus 67 I~~~L~~~l~~~~~~~~~T~~L~lp~~iV~vPl~~~R~~~rGFnq~~lL~~~LsR~~~~~n~~~~~~R~~~T~~Q~~~~~ 146 (207)
T TIGR00201 67 IARALASLLALTVSKAKRTTQLDLPDQIVPVPLSKKRKWRRGFNQADLLAQLLSRWLDIFNYSNIVSRLKNTKTQKLLKA 146 (207)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHH
T ss_conf 99998899999986031000235886044057763532115777789987521530002342003432002034666658
Q ss_pred ----HHHHHC--------CCCCCCEEEHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEE
Q ss_conf ----013310--------37334144087887322369999999986-598785688887
Q gi|254781011|r 117 ----SQIEGH--------LFKGARVLVIEDLVTLGNSMFEFVKVIRD-SGGIIQDGIGLF 163 (228)
Q Consensus 117 ----~~iEG~--------~~~g~~vliVDDviTtG~S~~~~i~~l~~-~g~~V~~~~vii 163 (228)
T Consensus 147 ~~R~~nl~n~f~l~~~~~~~~~~~ivL~DD~~TTGatl~~~~~lLl~k~ga~~V~~~~L~ 206 (207)
T TIGR00201 147 KLRKKNLENAFKLKSKKKEFQGRKIVLVDDVVTTGATLAEIAKLLLKKLGAAKVQVWSLA 206 (207)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 777777556665420324688755899704510123689999999864570011441206