Query         gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 228
No_of_seqs    150 out of 1959
Neff          6.2 
Searched_HMMs 39220
Date          Mon May 30 03:04:25 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781011.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK13809 orotate phosphoribosy 100.0       0       0  378.7  21.2  199    7-214     4-204 (206)
  2 PRK05500 bifunctional orotidin 100.0       0       0  369.2  19.5  190   13-211   287-476 (478)
  3 PRK00455 pyrE orotate phosphor 100.0       0       0  356.8  18.5  198   10-216     2-199 (200)
  4 PRK13810 orotate phosphoribosy 100.0       0       0  349.0  15.6  178    7-193    10-187 (187)
  5 COG0461 PyrE Orotate phosphori 100.0       0       0  341.6  19.4  197   12-216     2-200 (201)
  6 PRK13812 orotate phosphoribosy 100.0       0       0  337.8  15.2  170   13-193     3-172 (174)
  7 PRK13811 orotate phosphoribosy 100.0       0       0  337.3  14.5  169   12-193     1-169 (170)
  8 TIGR00336 pyrE orotate phospho 100.0       0       0  328.2  11.5  170   18-191     1-187 (187)
  9 TIGR01367 pyrE_Therm orotate p 100.0 4.6E-35 1.2E-39  249.5   6.7  165   16-189     2-181 (205)
 10 PRK02277 orotate phosphoribosy  99.9 9.1E-25 2.3E-29  182.3  12.0  169    5-188    23-197 (201)
 11 TIGR01090 apt adenine phosphor  99.9 1.6E-23   4E-28  174.3  11.4  154   25-188     4-175 (175)
 12 PRK02304 adenine phosphoribosy  99.9 1.5E-23 3.7E-28  174.5  10.7  144   37-189    17-174 (174)
 13 PRK12560 adenine phosphoribosy  99.9 2.1E-22 5.4E-27  166.9  10.3  147   36-189    10-174 (184)
 14 PRK08558 adenine phosphoribosy  99.9 6.5E-21 1.7E-25  157.2  13.0  139   45-189    83-238 (238)
 15 PRK09219 xanthine phosphoribos  99.9 1.4E-20 3.6E-25  155.1  14.4  133   54-191    31-181 (189)
 16 COG0503 Apt Adenine/guanine ph  99.8 4.6E-20 1.2E-24  151.7  10.1  144   37-188    20-177 (179)
 17 COG0856 Orotate phosphoribosyl  99.8 6.1E-20 1.6E-24  150.9   9.1  167    5-188    23-197 (203)
 18 PRK07322 adenine phosphoribosy  99.8   2E-19   5E-24  147.6  10.5  117   45-166    25-160 (178)
 19 TIGR01743 purR_Bsub pur operon  99.8 1.5E-18 3.7E-23  141.9   7.9  161    8-189    77-255 (269)
 20 KOG1712 consensus               99.8 5.3E-18 1.4E-22  138.2   8.9  156   24-189    13-182 (183)
 21 PRK09213 purine operon repress  99.7 2.7E-17 6.8E-22  133.7  12.1  135   48-192   105-256 (274)
 22 TIGR01744 XPRTase xanthine pho  99.7 7.8E-17   2E-21  130.7  10.9  137   48-191    27-181 (191)
 23 pfam00156 Pribosyltran Phospho  99.7 1.9E-16 4.8E-21  128.2  10.0  112   50-163     2-123 (123)
 24 KOG1377 consensus               99.7   4E-17   1E-21  132.5   4.5  201   14-223    37-258 (261)
 25 PRK06031 phosphoribosyltransfe  99.4 1.3E-12 3.4E-17  103.0   8.9  117   61-179    68-205 (233)
 26 PRK00553 ribose-phosphate pyro  99.2 9.5E-10 2.4E-14   84.4  15.2  151   12-178   122-277 (340)
 27 PRK01259 ribose-phosphate pyro  99.2 9.7E-10 2.5E-14   84.4  12.6  115   65-184   148-265 (309)
 28 PRK02812 ribose-phosphate pyro  99.1 2.1E-09 5.4E-14   82.2  12.8  151   13-180   127-283 (331)
 29 PRK06827 phosphoribosylpyropho  99.1 1.8E-09 4.5E-14   82.7  11.6  154   13-177   149-314 (381)
 30 PRK04117 consensus              99.1 3.3E-09 8.5E-14   80.9  12.4  114   65-183   151-267 (309)
 31 PRK05259 consensus              99.1 1.8E-09 4.5E-14   82.7  10.4  115   66-184   149-266 (310)
 32 PRK02458 ribose-phosphate pyro  99.1 3.8E-09 9.7E-14   80.5  12.0  101   80-183   172-274 (323)
 33 PRK01999 consensus              99.1 1.9E-09 4.9E-14   82.5  10.5  102   79-183   164-268 (311)
 34 PRK02039 consensus              99.1 3.3E-09 8.4E-14   80.9  11.7  105   79-186   166-273 (316)
 35 PRK01506 consensus              99.1 2.8E-09 7.1E-14   81.4  11.2  105   79-186   169-276 (317)
 36 COG0462 PrsA Phosphoribosylpyr  99.1 3.7E-09 9.4E-14   80.6  11.8  150   12-180   109-267 (314)
 37 PRK04554 consensus              99.1 3.1E-09   8E-14   81.1  11.2  154   13-183   113-271 (327)
 38 PRK02269 ribose-phosphate pyro  99.1 3.5E-09 8.8E-14   80.8  11.2  161   13-186   111-276 (321)
 39 PRK04923 ribose-phosphate pyro  99.0   6E-09 1.5E-13   79.2  10.4  102   79-183   168-273 (319)
 40 PRK05038 consensus              99.0 9.3E-09 2.4E-13   78.0  11.1  104   79-185   164-271 (315)
 41 PRK03092 ribose-phosphate pyro  99.0 8.4E-09 2.1E-13   78.3  10.7  116   64-183   136-257 (304)
 42 PRK00934 ribose-phosphate pyro  99.0 8.3E-09 2.1E-13   78.3  10.6  113   65-183   145-260 (286)
 43 PRK07199 phosphoribosylpyropho  99.0 9.4E-09 2.4E-13   78.0  10.8  102   79-183   162-267 (301)
 44 PTZ00145 phosphoribosylpyropho  99.0 1.4E-08 3.5E-13   76.9  11.4  156   12-183   228-395 (443)
 45 PRK01132 consensus              98.9 6.9E-09 1.8E-13   78.8   9.3  109   77-191   153-264 (286)
 46 PRK03675 consensus              98.9   2E-08   5E-13   75.9  10.7  110   65-181   142-254 (279)
 47 PRK02270 consensus              98.9 7.9E-08   2E-12   71.9  12.9  150   13-180   111-267 (327)
 48 PRK11595 gluconate periplasmic  98.9 1.7E-08 4.4E-13   76.2   9.4  111   53-163    85-224 (227)
 49 PRK09246 amidophosphoribosyltr  98.8   4E-07   1E-11   67.4  14.0  165   56-221   272-489 (503)
 50 PRK05205 bifunctional pyrimidi  98.8 1.4E-07 3.7E-12   70.2  11.1  116   50-166     5-136 (176)
 51 COG1926 Predicted phosphoribos  98.6 1.2E-06   3E-11   64.3  11.2  149   62-217    11-212 (220)
 52 COG1040 ComFC Predicted amidop  98.6 2.3E-07 5.8E-12   68.9   7.4  106   56-163    92-221 (225)
 53 COG0034 PurF Glutamine phospho  98.6 1.9E-07 4.8E-12   69.5   6.9  137   55-197   266-437 (470)
 54 COG2065 PyrR Pyrimidine operon  98.5 7.4E-07 1.9E-11   65.6   9.1  116   50-166     5-137 (179)
 55 PTZ00271 hypoxanthine-guanine   98.5 1.9E-06   5E-11   62.9  10.7  132   29-165     7-157 (211)
 56 COG2236 Predicted phosphoribos  98.5 3.1E-07 7.9E-12   68.1   6.3   98   49-151     4-112 (192)
 57 PRK06388 amidophosphoribosyltr  98.4 1.8E-06 4.6E-11   63.1   7.5  135   56-195   275-443 (474)
 58 PRK08525 amidophosphoribosyltr  98.3 1.7E-06 4.4E-11   63.2   6.6  136   55-195   258-427 (445)
 59 PRK07349 amidophosphoribosyltr  98.3 1.8E-06 4.6E-11   63.1   6.6  100   56-161   291-407 (495)
 60 PRK09177 xanthine-guanine phos  98.3 1.7E-06 4.2E-11   63.3   6.4   96   52-151    10-109 (156)
 61 PRK06781 amidophosphoribosyltr  98.3 2.9E-06 7.3E-11   61.8   7.5  135   55-195   266-435 (471)
 62 PRK07272 amidophosphoribosyltr  98.3 1.8E-06 4.5E-11   63.1   6.3  135   55-195   268-437 (484)
 63 PRK07631 amidophosphoribosyltr  98.3 2.3E-06 5.9E-11   62.3   6.7  134   56-195   267-435 (475)
 64 PRK09162 hypoxanthine-guanine   98.3 1.1E-05 2.8E-10   58.0  10.1  111   51-165    16-136 (181)
 65 PRK07847 amidophosphoribosyltr  98.3 3.3E-06 8.5E-11   61.3   7.4  135   56-196   261-430 (489)
 66 PRK09123 amidophosphoribosyltr  98.3 4.4E-06 1.1E-10   60.5   8.0  100   56-161   270-386 (480)
 67 PRK05793 amidophosphoribosyltr  98.3 2.5E-06 6.3E-11   62.2   6.4  101   56-161   275-391 (472)
 68 PRK08341 amidophosphoribosyltr  98.3 3.1E-06 7.9E-11   61.5   6.9  102   55-161   254-369 (442)
 69 COG0634 Hpt Hypoxanthine-guani  98.2 2.8E-05 7.1E-10   55.3   9.7  114   50-165    10-132 (178)
 70 KOG1448 consensus               98.1 1.9E-05 4.7E-10   56.5   8.4  152   11-180   107-267 (316)
 71 TIGR01203 HGPRTase hypoxanthin  98.0 3.8E-05 9.7E-10   54.4   8.3  110   52-164     3-139 (183)
 72 TIGR01251 ribP_PPkin ribose-ph  97.8 0.00054 1.4E-08   46.9  10.7  154   10-179   104-264 (316)
 73 TIGR01134 purF amidophosphorib  97.8 8.3E-05 2.1E-09   52.2   6.3  138   55-196   274-448 (467)
 74 KOG0572 consensus               97.7 9.1E-05 2.3E-09   52.0   5.8   87   74-161   288-391 (474)
 75 TIGR00201 comF comF family pro  97.6   2E-05 5.1E-10   56.3   1.1  107   57-163    67-206 (207)
 76 PTZ00149 hypoxanthine phosphor  97.4 0.00096 2.4E-08   45.3   8.2  112   50-165    43-176 (231)
 77 KOG3367 consensus               96.8   0.006 1.5E-07   40.1   7.2  109   52-164    37-163 (216)
 78 TIGR01091 upp uracil phosphori  96.5  0.0033 8.3E-08   41.8   3.8  113   80-201    75-198 (213)
 79 PRK00129 upp uracil phosphorib  96.2   0.096 2.4E-06   32.3   9.9  113   82-201    74-193 (208)
 80 COG0035 Upp Uracil phosphoribo  95.2   0.079   2E-06   32.8   6.3   72  123-201   121-195 (210)
 81 TIGR01078 arcA arginine deimin  86.3    0.37 9.5E-06   28.4   1.6   53  134-186   341-398 (421)
 82 KOG1503 consensus               82.0     4.6 0.00012   21.3   8.9  103   80-185   170-305 (354)
 83 TIGR02782 TrbB_P P-type conjug  81.9     4.3 0.00011   21.5   5.5   95    9-111     7-110 (315)
 84 pfam00456 Transketolase_N Tran  79.2     1.5 3.8E-05   24.5   2.3   34   11-46     30-70  (333)
 85 PRK07105 pyridoxamine kinase;   78.1     6.2 0.00016   20.5   7.3   35  186-220   222-256 (284)
 86 PRK01388 arginine deiminase; P  76.3       4  0.0001   21.7   3.9   51  135-185   334-386 (410)
 87 COG2235 ArcA Arginine deiminas  73.5     3.7 9.4E-05   21.9   3.1   54  134-187   331-387 (409)
 88 TIGR00502 nagB glucosamine-6-p  71.6     4.9 0.00012   21.1   3.4   37   58-94      9-49  (260)
 89 pfam06616 BsuBI_PstI_RE BsuBI/  70.8     9.4 0.00024   19.3   5.1   41  125-165   224-268 (306)
 90 cd01976 Nitrogenase_MoFe_alpha  66.0      12  0.0003   18.7   6.2   69   91-160   121-205 (421)
 91 PTZ00089 transketolase; Provis  65.1     9.6 0.00024   19.2   3.7   29   16-45     38-73  (670)
 92 PRK12753 transketolase; Review  64.0      13 0.00033   18.4   4.2   35   10-46     30-71  (662)
 93 KOG1017 consensus               63.5      12 0.00032   18.5   4.1   60  126-187   189-248 (267)
 94 TIGR03029 EpsG chain length de  61.8      14 0.00036   18.2   8.5   19  141-159   252-270 (274)
 95 PRK09841 cryptic autophosphory  61.3      14 0.00036   18.1   8.6   14  144-157   683-696 (726)
 96 TIGR01082 murC UDP-N-acetylmur  59.0     8.7 0.00022   19.5   2.6  123   92-214   305-466 (491)
 97 pfam04989 CmcI Cephalosporin h  56.9      17 0.00043   17.6   4.1   44   48-100    11-58  (202)
 98 COG0773 MurC UDP-N-acetylmuram  56.5     6.9 0.00018   20.2   1.8  121   92-215   288-430 (459)
 99 PRK12754 transketolase; Review  55.7     7.2 0.00018   20.0   1.8   34   11-46     32-73  (663)
100 cd00316 Oxidoreductase_nitroge  55.4      18 0.00046   17.5   8.1   33  128-160   154-186 (399)
101 PRK08574 cystathionine gamma-s  54.7      18 0.00047   17.4   4.0   32  123-157    89-120 (384)
102 TIGR01007 eps_fam capsular exo  54.7      18 0.00047   17.4   8.9   90   32-163    98-190 (207)
103 KOG0425 consensus               52.4      18 0.00045   17.5   3.3   63  160-222    91-155 (171)
104 TIGR00021 rpiA ribose 5-phosph  52.4      13 0.00034   18.3   2.7   65   14-106     6-70  (236)
105 KOG3111 consensus               52.1      20 0.00051   17.1   5.1  137   10-159    17-196 (224)
106 PRK09311 bifunctional 3,4-dihy  49.4      22 0.00056   16.9   5.7   42  120-164   241-294 (400)
107 PRK00014 ribB 3,4-dihydroxy-2-  49.3      22 0.00057   16.9   6.0   63  135-200   152-219 (230)
108 TIGR01464 hemE uroporphyrinoge  48.3      21 0.00052   17.1   3.1  127   16-151   124-282 (351)
109 PRK04042 rpl4lp 50S ribosomal   47.5      24  0.0006   16.7   4.2   25  130-154   141-165 (254)
110 TIGR03672 rpl4p_arch 50S ribos  46.8      24 0.00062   16.6   4.5   58  130-189   140-224 (251)
111 cd00532 MGS-like MGS-like doma  45.7      25 0.00064   16.5   5.0   27   77-109    25-51  (112)
112 cd00992 PDZ_signaling PDZ doma  45.1      15 0.00039   17.9   2.1   37  121-157    42-78  (82)
113 PRK07671 cystathionine beta-ly  44.2      18 0.00045   17.5   2.3   14  122-135   130-143 (377)
114 pfam11382 DUF3186 Protein of u  43.4      27  0.0007   16.3   4.4   18  146-163   103-120 (307)
115 PRK07504 O-succinylhomoserine   43.3      17 0.00042   17.7   2.0   15  121-135   145-159 (397)
116 PRK13435 response regulator; P  43.0      23  0.0006   16.7   2.7   19   88-106    62-80  (141)
117 pfam02233 PNTB NAD(P) transhyd  43.0      28  0.0007   16.2   3.3   68  124-192   306-378 (464)
118 PRK05994 O-acetylhomoserine am  42.8      26 0.00067   16.4   3.0   12  122-133   144-155 (426)
119 pfam00551 Formyl_trans_N Formy  42.6      28 0.00072   16.2   5.0   10   77-86     79-88  (181)
120 pfam01343 Peptidase_S49 Peptid  41.6      29 0.00074   16.1   3.1   14  184-197   136-149 (154)
121 PRK00115 hemE uroporphyrinogen  41.4      19 0.00049   17.3   2.1   39   31-69    146-189 (347)
122 pfam04189 Gcd10p Gcd10p family  41.2      29 0.00075   16.1   3.8   52  121-179   198-249 (300)
123 cd00717 URO-D Uroporphyrinogen  40.3      22 0.00056   16.9   2.3   15  172-186   244-258 (335)
124 pfam02477 Nairo_nucleo Nucleoc  40.3      24  0.0006   16.7   2.4   65  146-222   295-359 (442)
125 COG0120 RpiA Ribose 5-phosphat  39.8      28 0.00072   16.2   2.7   27   79-107    47-73  (227)
126 PRK13978 ribose-5-phosphate is  39.5      31  0.0008   15.9   3.2   73    6-106     1-74  (228)
127 PRK07206 hypothetical protein;  38.4      32 0.00083   15.8   3.6   27   77-103    70-96  (415)
128 PRK00830 consensus              38.1      30 0.00075   16.0   2.6   77  138-215   171-266 (273)
129 PRK13745 anaerobic sulfatase-m  37.3      34 0.00086   15.7   2.8   47  140-187   153-202 (412)
130 TIGR03161 ribazole_CobZ alpha-  37.2      34 0.00086   15.7   2.9   15   50-64     42-56  (140)
131 cd01523 RHOD_Lact_B Member of   36.8      34 0.00088   15.6   3.2   33  122-157    57-89  (100)
132 cd07022 S49_Sppa_36K_type Sign  36.8      34 0.00088   15.6   3.6   86  129-219    77-165 (214)
133 KOG3124 consensus               36.5      15 0.00039   17.9   1.0   79   77-156   162-248 (267)
134 PRK11070 ssDNA exonuclease Rec  36.4      35 0.00089   15.6   4.2  129   11-157    18-154 (574)
135 KOG2311 consensus               36.2      22 0.00056   16.9   1.7   84  129-222   437-520 (679)
136 PRK09191 two-component respons  35.7      36 0.00091   15.5   4.0   63  127-192   138-223 (261)
137 PRK06084 O-acetylhomoserine am  35.4      23 0.00058   16.8   1.7   37  118-154   135-174 (424)
138 PRK06518 hypothetical protein;  35.1      19 0.00047   17.4   1.2   13  214-226   174-186 (192)
139 TIGR01372 soxA sarcosine oxida  35.0      37 0.00094   15.4   5.9   54  123-183   328-383 (1026)
140 PRK05802 hypothetical protein;  34.6      37 0.00095   15.4   4.3  146   32-215    99-252 (328)
141 TIGR02173 cyt_kin_arch cytidyl  34.2      35 0.00089   15.6   2.5  122   80-214     4-173 (173)
142 PRK09019 translation initiatio  34.0      38 0.00097   15.3   5.0   71  102-183    31-104 (108)
143 TIGR00313 cobQ cobyric acid sy  33.8      38 0.00098   15.3   3.5  162   23-217    70-245 (502)
144 TIGR01469 cobA_cysG_Cterm urop  33.8      35 0.00089   15.6   2.4  149    5-198    60-223 (242)
145 cd01480 vWA_collagen_alpha_1-V  33.7      38 0.00098   15.3   6.3   61  127-193   110-177 (186)
146 smart00448 REC cheY-homologous  33.5      35  0.0009   15.5   2.4   27  128-157     2-28  (55)
147 TIGR01857 FGAM-synthase phosph  33.2      25 0.00064   16.5   1.6  122   24-166   352-497 (1279)
148 cd07213 Pat17_PNPLA8_PNPLA9_li  33.1      39   0.001   15.2   4.2   21   76-97     33-53  (288)
149 pfam00595 PDZ PDZ domain (Also  32.7      31 0.00078   15.9   2.0   38  121-158    40-77  (80)
150 cd07023 S49_Sppa_N_C Signal pe  32.4      29 0.00073   16.1   1.8   89  126-219    66-158 (208)
151 TIGR00432 arcsn_tRNA_tgt archa  32.3      41   0.001   15.1   2.9   29  122-150   613-644 (658)
152 cd07216 Pat17_PNPLA8_PNPLA9_li  31.7      41  0.0011   15.1   4.1   19   77-96     42-60  (309)
153 pfam00573 Ribosomal_L4 Ribosom  31.6      42  0.0011   15.1   2.6   83  125-210   103-188 (190)
154 PRK08134 O-acetylhomoserine am  31.2      41   0.001   15.1   2.5   17  120-136   143-159 (433)
155 TIGR02159 PA_CoA_Oxy4 phenylac  30.7      43  0.0011   15.0   4.4   36  146-181    50-91  (152)
156 PRK08064 cystathionine beta-ly  30.4      20 0.00051   17.1   0.7   12  123-134   135-146 (390)
157 TIGR02128 G6PI_arch bifunction  30.3      44  0.0011   14.9   4.2   83   70-159    19-125 (338)
158 COG1433 Uncharacterized conser  30.3      44  0.0011   14.9   6.7   53  142-199    54-108 (121)
159 PRK13949 shikimate kinase; Pro  30.3      21 0.00054   17.0   0.8   27   80-106     5-32  (169)
160 COG0108 RibB 3,4-dihydroxy-2-b  30.1      44  0.0011   14.9   6.2   61  135-198   136-201 (203)
161 PRK09028 cystathionine beta-ly  30.0      27  0.0007   16.3   1.4   16  120-135   140-155 (394)
162 pfam04659 Arch_fla_DE Archaeal  29.9      44  0.0011   14.9   4.0   32  186-217    36-67  (99)
163 PRK08249 cystathionine gamma-s  29.8      26 0.00067   16.4   1.3   64  119-188   142-211 (398)
164 KOG0337 consensus               29.4      35  0.0009   15.5   1.9   67   93-163   229-295 (529)
165 PRK05968 hypothetical protein;  29.3      28 0.00072   16.2   1.4   30  125-154   146-178 (389)
166 PRK02747 consensus              29.1      43  0.0011   15.0   2.2   78  137-215   153-249 (257)
167 smart00228 PDZ Domain present   29.0      43  0.0011   15.0   2.2   35  123-157    44-78  (85)
168 PRK09314 bifunctional 3,4-dihy  29.0      46  0.0012   14.8   6.3   54  141-197   142-200 (339)
169 PRK12485 bifunctional 3,4-dihy  28.9      46  0.0012   14.8   5.8   42  120-164   240-294 (369)
170 PRK08248 O-acetylhomoserine am  28.8      30 0.00077   16.0   1.4   16  121-136   144-159 (431)
171 cd03768 SR_ResInv Serine Recom  28.8      46  0.0012   14.8   2.8   79  103-186     2-91  (126)
172 smart00114 CARD Caspase recrui  28.6      38 0.00096   15.4   1.9   41  174-214     8-48  (88)
173 cd01985 ETF The electron trans  28.4      34 0.00087   15.6   1.6   59   39-104    59-119 (181)
174 PRK13937 phosphoheptose isomer  28.4      47  0.0012   14.7   8.2  115   54-181    24-160 (192)
175 COG5016 Pyruvate/oxaloacetate   28.3      47  0.0012   14.7   5.0   16  139-154   301-316 (472)
176 KOG1993 consensus               28.1      39   0.001   15.2   1.9   21  206-226   387-407 (978)
177 PRK07811 cystathionine gamma-s  27.4      32 0.00082   15.8   1.4   18  120-137   137-154 (386)
178 COG3387 SGA1 Glucoamylase and   27.0      39 0.00098   15.3   1.7   20  182-202   535-554 (612)
179 PRK08058 DNA polymerase III su  27.0      50  0.0013   14.6   9.7   74   90-163    67-148 (329)
180 KOG0741 consensus               27.0      50  0.0013   14.6  10.9  149   64-216   525-703 (744)
181 pfam11000 DUF2840 Protein of u  26.8      39   0.001   15.2   1.7   62   98-159    38-114 (149)
182 pfam09756 DDRGK DDRGK domain.   26.7      50  0.0013   14.5   5.1   72  124-209   109-183 (189)
183 smart00829 PKS_ER Enoylreducta  26.4      51  0.0013   14.5   3.8   75   80-155   108-201 (288)
184 TIGR01426 MGT glycosyltransfer  26.0      52  0.0013   14.4   5.1   53   52-104    74-126 (429)
185 PRK13288 pyrophosphatase PpaX;  25.6      53  0.0013   14.4   5.2   58  127-198   156-213 (214)
186 cd03785 GT1_MurG MurG is an N-  25.6      53  0.0013   14.4   3.1   28   76-105    88-117 (350)
187 PRK00939 translation initiatio  25.6      53  0.0013   14.4   3.9   62  124-185    34-98  (99)
188 PRK06476 pyrroline-5-carboxyla  25.5      41   0.001   15.1   1.6   16   79-95     87-102 (255)
189 cd04882 ACT_Bt0572_2 C-termina  25.4      53  0.0014   14.4   5.4   43  140-182    11-64  (65)
190 PRK10693 response regulator of  25.2      54  0.0014   14.4   4.5   30   77-106    51-85  (337)
191 PRK05319 rplD 50S ribosomal pr  25.2      54  0.0014   14.3   5.2   86  125-214   118-206 (206)
192 PRK09444 pntB pyridine nucleot  24.4      34 0.00086   15.7   1.0   66  125-191   302-372 (459)
193 PRK03731 aroL shikimate kinase  24.3      29 0.00074   16.1   0.7   86   80-177     6-113 (172)
194 PRK08508 biotin synthase; Prov  24.3      30 0.00077   16.0   0.8   14  143-156   140-153 (279)
195 COG2025 FixB Electron transfer  24.3      56  0.0014   14.2   3.4   62   42-103    45-107 (313)
196 COG0532 InfB Translation initi  24.2      56  0.0014   14.2   4.5   66  127-195   307-396 (509)
197 KOG3209 consensus               24.1      56  0.0014   14.2   3.4   58  104-163   758-835 (984)
198 cd07039 TPP_PYR_POX Pyrimidine  23.9      57  0.0014   14.2   8.9   93   61-163     2-96  (164)
199 TIGR00070 hisG ATP phosphoribo  23.8      46  0.0012   14.8   1.6   19  134-159   183-201 (317)
200 pfam08679 DsrD Dissimilatory s  23.7      51  0.0013   14.5   1.9   31   36-66     10-43  (65)
201 PRK13633 cobalt transporter AT  23.5      58  0.0015   14.1   3.4   36  121-157   158-200 (281)
202 PRK11880 pyrroline-5-carboxyla  23.4      39 0.00099   15.3   1.2   14   52-65     69-82  (267)
203 TIGR02823 oxido_YhdH putative   23.2      59  0.0015   14.1   5.8  121   76-199    27-194 (330)
204 pfam01053 Cys_Met_Meta_PP Cys/  23.2      57  0.0015   14.2   2.0   10  179-188   190-199 (381)
205 COG0616 SppA Periplasmic serin  23.1      55  0.0014   14.3   1.9   88  127-219   130-220 (317)
206 pfam10761 DUF2590 Protein of u  22.8      59  0.0015   14.1   2.8   22   30-52      6-27  (103)
207 PRK11778 putative periplasmic   22.8      17 0.00045   17.5  -0.7   86  129-219   137-225 (317)
208 PRK13938 phosphoheptose isomer  22.7      60  0.0015   14.0   5.6   97   55-159    28-146 (196)
209 PRK06531 yajC preprotein trans  22.5      24 0.00061   16.6  -0.0   31  100-130    14-44  (120)
210 PRK07449 2-succinyl-6-hydroxy-  22.4      61  0.0015   14.0   7.2   18  178-195   495-512 (548)
211 TIGR00064 ftsY signal recognit  22.2      57  0.0014   14.2   1.8   66  125-194   203-274 (284)
212 pfam01012 ETF Electron transfe  22.2      61  0.0016   14.0   3.1   39   62-104    76-115 (161)
213 PRK00910 ribB 3,4-dihydroxy-2-  22.0      62  0.0016   14.0   6.6   61  135-198   148-213 (218)
214 cd06381 PBP1_iGluR_delta_like   21.9      62  0.0016   13.9   4.5   43   62-109    52-95  (363)
215 TIGR00739 yajC preprotein tran  21.9      21 0.00053   17.1  -0.5   29  103-131    18-46  (86)
216 CHL00189 infB translation init  21.7      63  0.0016   13.9   5.3   84  125-220   321-410 (770)
217 cd06391 PBP1_iGluR_delta_2 N-t  21.5      63  0.0016   13.9   4.4   41   62-107    52-93  (400)
218 cd01574 PBP1_LacI Ligand-bindi  21.5      63  0.0016   13.9   9.9   90   77-183    56-150 (264)
219 PRK04004 translation initiatio  21.4      63  0.0016   13.9   4.5   63  129-194   355-442 (592)
220 pfam05783 DLIC Dynein light in  21.4      63  0.0016   13.9   4.5   47  176-225   212-258 (490)
221 cd00227 CPT Chloramphenicol (C  21.4      47  0.0012   14.7   1.3   43  120-163    79-121 (175)
222 PRK13222 phosphoglycolate phos  21.3      64  0.0016   13.9   2.5   56  126-195   166-221 (228)
223 cd06394 PBP1_iGluR_Kainate_KA1  21.3      64  0.0016   13.9   4.3   42   63-109    56-99  (333)
224 TIGR02386 rpoC_TIGR DNA-direct  21.1      64  0.0016   13.8   2.2   85    8-111   342-436 (1552)
225 PRK05585 yajC preprotein trans  21.0      37 0.00094   15.4   0.7   43   89-140    23-65  (107)
226 TIGR00213 GmhB_yaeD D,D-heptos  21.0      65  0.0016   13.8   3.9   16  198-213    56-71  (178)
227 PRK12463 chorismate synthase;   20.9      65  0.0017   13.8   3.0   12  119-130   296-307 (390)
228 PRK09310 aroDE bifunctional 3-  20.7      66  0.0017   13.8   6.2   53  125-187   331-384 (477)
229 PRK08674 bifunctional phosphog  20.6      66  0.0017   13.8   3.9   57   51-107     5-68  (328)
230 TIGR01011 rpsB_bact ribosomal   20.6      66  0.0017   13.8   3.4  159   18-189     5-190 (227)
231 PRK03971 putative deoxyhypusin  20.5      33 0.00085   15.7   0.3   12  125-136   142-153 (334)
232 TIGR01364 serC_1 phosphoserine  20.4      25 0.00064   16.5  -0.3   37  157-193   219-258 (391)
233 PRK07451 translation initiatio  20.3      67  0.0017   13.7   4.2   69  104-183    37-108 (112)
234 TIGR02483 PFK_mixed phosphofru  20.2      33 0.00083   15.8   0.2   40   67-108    96-138 (339)
235 COG0371 GldA Glycerol dehydrog  20.1      67  0.0017   13.7   4.9   41   68-108    75-116 (360)
236 KOG0743 consensus               20.0      68  0.0017   13.7   7.4  100   37-138   185-298 (457)

No 1  
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=378.74  Aligned_cols=199  Identities=21%  Similarity=0.312  Sum_probs=188.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             89789999999999865976820789867311872640142621357989999999999998664217566678998223
Q gi|254781011|r    7 PQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGET   86 (228)
Q Consensus         7 ~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~   86 (228)
                      .+..+|++++++.|+++||++|   |+|+|+||++||||||||++++||+.++.+++++.+.. ..   .++|.|+|+|+
T Consensus         4 ~~~~~~~~~~~~~L~e~ga~kf---G~FtL~SG~kSp~Y~D~r~~~s~P~~~~~i~~~~~~~~-~~---~~~d~i~Gv~~   76 (206)
T PRK13809          4 YEDAKLRGQAVAILYQIGAIKF---GKHILASGEETPLYVDMRLVISSPEVLQTVATLIWRLR-PS---FNSSLLCGVPY   76 (206)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEE---CCEEECCCCCCCEEEECEECCCCHHHHHHHHHHHHHHH-HC---CCCCEEECCCH
T ss_conf             2789999999999998699896---98787878878997879523069999999999999986-25---58678984313


Q ss_pred             CHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH--HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf             125788999851587178763156420110013--310373341440878873223699999999865987856888874
Q gi|254781011|r   87 AGIPFATLLAERLNLPMIYVRKKSKKHGQKSQI--EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF  164 (228)
Q Consensus        87 ~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~i--EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~  164 (228)
                      +|||+|+.+|.++++|++|+||++|+||+++++  ||.+.+|+||++||||+|||+|+++++++||++|++|.+++|++ 
T Consensus        77 ggip~A~~ia~~~~~P~~~vRke~K~~g~~~~i~iEG~~~~G~kVvvIEDViTTGgSil~ai~~lr~~G~~V~~v~viv-  155 (206)
T PRK13809         77 TALTLATSISLKYNIPMVLRRKELQNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEENGLVVREALVFL-  155 (206)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEE-
T ss_conf             3899999999860998388744545678676025335778998899997334468009999999998799699999999-


Q ss_pred             CCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             17632489999977980999632999999999888999899999999997
Q gi|254781011|r  165 YDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLD  214 (228)
Q Consensus       165 ~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~  214 (228)
                       ||+++|.++|+++|+++|||+||++|++++.+.|+|++++.+.++.|++
T Consensus       156 -DReegg~e~l~~~Gi~l~sl~t~~~ll~~l~~~g~ise~e~~~~~k~~e  204 (206)
T PRK13809        156 -DRRKEACQPLGPQGIKVSSVFTVPTLIKALIAYGKLSSGDLTLANKISE  204 (206)
T ss_pred             -ECCCCHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             -2651679999977991899677999999999849969999999999986


No 2  
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=100.00  E-value=0  Score=369.17  Aligned_cols=190  Identities=26%  Similarity=0.361  Sum_probs=181.5

Q ss_pred             HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH
Q ss_conf             99999999865976820789867311872640142621357989999999999998664217566678998223125788
Q gi|254781011|r   13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFA   92 (228)
Q Consensus        13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a   92 (228)
                      .++++..|+++||+||   |+|+|+||+.||||||+|.++|+|..++.+++.+++.+..    .+||.|+|+||+|+|+|
T Consensus       287 ~~~li~~L~dig~lkF---GeFtLkSG~~SPyYiDlr~~~S~P~ll~~v~~~ya~~~~~----~~fD~i~GvpY~glP~A  359 (478)
T PRK05500        287 HQDLILQLYDIGCILF---GEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKN----LTFDRIAGIPYGSLPTA  359 (478)
T ss_pred             HHHHHHHHHHCCCEEE---ECEEECCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCC----CCCCEEECCCCCHHHHH
T ss_conf             6899999974585785---0468767885776886145138899999999999998608----99767966665409999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHH
Q ss_conf             99985158717876315642011001331037334144087887322369999999986598785688887417632489
Q gi|254781011|r   93 TLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVP  172 (228)
Q Consensus        93 ~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~  172 (228)
                      +.+|..+++||+|+|||+|+||++++|||.+.+|++|+|||||+|||+|++++++.|+++|++|.+++|++  ||.+++.
T Consensus       360 T~lSl~~~~Pm~~~RKE~K~hGt~~~IeG~~~~G~~vlIIdDViTsG~Si~e~i~~L~~~G~~V~~~vV~l--DReeg~~  437 (478)
T PRK05500        360 TGLALHLHHPMIFPRKEVKAHGTRRLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFI--DHEQGVK  437 (478)
T ss_pred             HHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEE--ECCCCHH
T ss_conf             99999828976996164356688872565338998899996012677879999999998799387799999--3542368


Q ss_pred             HHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             999977980999632999999999888999899999999
Q gi|254781011|r  173 ARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRC  211 (228)
Q Consensus       173 ~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~  211 (228)
                      ++|+++||++||++|+++|++.|++.|.|++++++.+.+
T Consensus       438 ~~L~~~Gi~l~sv~tl~ei~~~L~~~g~i~~~q~~~~~~  476 (478)
T PRK05500        438 DKLQSHGYQAYSVLTISEITETLYQAGRINEEQYQALTE  476 (478)
T ss_pred             HHHHHCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             899867936999730999999999839989999998873


No 3  
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=100.00  E-value=0  Score=356.80  Aligned_cols=198  Identities=35%  Similarity=0.553  Sum_probs=187.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
Q ss_conf             89999999999865976820789867311872640142621357989999999999998664217566678998223125
Q gi|254781011|r   10 NIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGI   89 (228)
Q Consensus        10 ~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gi   89 (228)
                      ...++++++.|+++||++|   |||+|+||++||||||+|++++||+.++.+++++++.|.+    .++|.|+|||+|||
T Consensus         2 ~~~~~~~~~~l~~~~al~~---G~F~L~SG~~S~~Y~d~~~l~~~p~~~~~i~~~~~~~i~~----~~~d~I~G~a~ggi   74 (200)
T PRK00455          2 KMYAREFLEFLLEIGALLF---GHFTLSSGRKSPYYFDCRKLFNYPEALALLGRFLAEAIKD----SGIDFVAGPATGGI   74 (200)
T ss_pred             CHHHHHHHHHHHHCCCEEE---CCEEECCCCCCHHHHCCHHHHHCHHHHHHHHHHHHHHHHH----CCCCEEEECCCCHH
T ss_conf             0789999999998899597---9688677475616718889886999999999999999754----49989973331068


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH
Q ss_conf             78899985158717876315642011001331037334144087887322369999999986598785688887417632
Q gi|254781011|r   90 PFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP  169 (228)
Q Consensus        90 p~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~  169 (228)
                      |+|+.+|..+++|++|+||++|+||+++++||.+.+|+||+|||||+|||+|+++++++|+++|++|++++|++||+ ++
T Consensus        75 pia~~ia~~l~~p~~~~Rke~K~hG~~~~ieG~~~~g~~VliVeDViTtG~S~~~ai~~l~~~G~~V~~v~vivDR~-~~  153 (200)
T PRK00455         75 PLAAAVARALDLPMIFVRKEAKDHGEGRQIEGALLKGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRE-LS  153 (200)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHCCCEEEEEEEEEECC-CH
T ss_conf             99999999729987999705775565866642445545348876301047019999999998799799999999567-35


Q ss_pred             HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             48999997798099963299999999988899989999999999729
Q gi|254781011|r  170 EVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNP  216 (228)
Q Consensus       170 ~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP  216 (228)
                      ++.+.+++.|+++|||+||+++++.+ +...+++++...++.|++++
T Consensus       154 ~~~~~~~~~gi~l~sl~tl~~~~~~~-~~~~~~~~~~~~i~~~~~~~  199 (200)
T PRK00455        154 AAQEVEADAGVPLISLITLDDLLEYA-EEGPLCEEGLPAVKPYRRNY  199 (200)
T ss_pred             HHHHHHHHCCCCEEEEEEHHHHHHHH-HHCCCCHHHHHHHHHHHHHC
T ss_conf             66778986599789997638989989-86976643048777788627


No 4  
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=349.01  Aligned_cols=178  Identities=28%  Similarity=0.410  Sum_probs=170.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             89789999999999865976820789867311872640142621357989999999999998664217566678998223
Q gi|254781011|r    7 PQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGET   86 (228)
Q Consensus         7 ~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~   86 (228)
                      +|.++.++++++.|.++||++|   |+|+|+||++||||||||+++++|+.+.++++.+++.|..    .++|.|+|||+
T Consensus        10 ~~m~~~k~~ll~~l~~~gal~~---G~F~L~SG~~S~~Y~d~r~~~~~p~~~~~i~~~~~~~i~~----~~~d~I~G~a~   82 (187)
T PRK13810         10 NNIENQKQELIAALKACGAVRY---GDFTLASGKKSKYYIDIKKASTDPKTLKLIARQAALRIKE----MDVDTIAGVEL   82 (187)
T ss_pred             CCHHHHHHHHHHHHHHCCCEEE---CEEEECCCCCCCHHCCCHHHHCCHHHHHHHHHHHHHHCCC----CCCCEEECCCC
T ss_conf             7778999999999998899696---9289477576712351944547899999999999984411----49877943110


Q ss_pred             CHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC
Q ss_conf             12578899985158717876315642011001331037334144087887322369999999986598785688887417
Q gi|254781011|r   87 AGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD  166 (228)
Q Consensus        87 ~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~  166 (228)
                      ||||+|+.+|..+++|++|+||++|+||+++++||.+.+|+||+|||||+|||+|+++++++++++|++|++++|++  |
T Consensus        83 Ggipla~~va~~~~~p~~~vRke~K~~G~~~~ieG~~~~g~rVlvVEDViTTGgS~~eai~~l~~~G~~V~~v~~iv--D  160 (187)
T PRK13810         83 GGVPLATAVSLETGLPLLIVRKSVKDYGTKSRFVGDLKPEDRIVMLEDVTTSGGSVRDAIEVVREAGAIVKYVITVV--D  160 (187)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE--E
T ss_conf             12799999999819986999833776443435885047998899998543568239999999998899799999999--7


Q ss_pred             CCHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf             632489999977980999632999999
Q gi|254781011|r  167 IFPEVPARFRENNIKLHYLATWNDILT  193 (228)
Q Consensus       167 ~~~~~~~~l~~~gi~~~sl~t~~~il~  193 (228)
                      |.+++.++++++|++++||+|++||++
T Consensus       161 R~~g~~e~l~~~gv~~~sl~t~~dlle  187 (187)
T PRK13810        161 REEGATENLKEADVELVPLVSASDLLK  187 (187)
T ss_pred             CCCCHHHHHHHCCCCEEEECCHHHHHC
T ss_conf             784769999977990999461989619


No 5  
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=100.00  E-value=0  Score=341.59  Aligned_cols=197  Identities=29%  Similarity=0.419  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH
Q ss_conf             99999999986597682078986731187264014262135798999999999999866421756667899822312578
Q gi|254781011|r   12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPF   91 (228)
Q Consensus        12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~   91 (228)
                      +++++++.|++.+|++|   |+|+|+||++||||||+|+++++|+.++.++..+++.+.+.   .++|+|+|||++|||+
T Consensus         2 ~~~~~~~~l~~~~a~~f---G~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~---~~~d~v~G~a~ggiP~   75 (201)
T COG0461           2 YKRELAELLLEKGALKF---GEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEA---LEFDVVAGPALGGIPL   75 (201)
T ss_pred             HHHHHHHHHHHCCCEEC---CCEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCC---CCCCEEEECCCCCHHH
T ss_conf             36999999997597561---75542578857768865210479889999999999975416---7876897523345489


Q ss_pred             HHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH
Q ss_conf             89998515-871-7876315642011001331037334144087887322369999999986598785688887417632
Q gi|254781011|r   92 ATLLAERL-NLP-MIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP  169 (228)
Q Consensus        92 a~~iA~~l-~~p-~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~  169 (228)
                      |+++|..+ ..| |+|+||++|+||+++++||...+|+||+|||||+|||+|+++++++||++|++|.++++++||+  +
T Consensus        76 A~~~a~~l~~~~~~~~~Rke~K~hG~~~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~--~  153 (201)
T COG0461          76 AAATALALAHLPPMAYVRKEAKDHGTGGLIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQ--S  153 (201)
T ss_pred             HHHHHHHHCCCCCEEEEECEECCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEECC--H
T ss_conf             99999984548827998220004787651574378998999997201678769999999998698598999999520--6


Q ss_pred             HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             48999997798099963299999999988899989999999999729
Q gi|254781011|r  170 EVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNP  216 (228)
Q Consensus       170 ~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP  216 (228)
                      ++.+.++++|++++||+|++|+++++.+.+.++.+......+|..+|
T Consensus       154 ~~~~~~~~~g~~~~sl~tl~dl~~~~~~~~~~~~~~~~~~~~~~~~~  200 (201)
T COG0461         154 GAKEVLKEYGVKLVSLVTLSDLLEVLYEAGDIPLEELAIPAEAYRSR  200 (201)
T ss_pred             HHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             67888986599668874699999998752689878887899752247


No 6  
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=337.79  Aligned_cols=170  Identities=25%  Similarity=0.379  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH
Q ss_conf             99999999865976820789867311872640142621357989999999999998664217566678998223125788
Q gi|254781011|r   13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFA   92 (228)
Q Consensus        13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a   92 (228)
                      ++++++.|++++|++|   |||+|+||++||||||||+++++|+.+.++++.+++.+.+      .+.|+|+|+||||+|
T Consensus         3 ~~~li~~l~e~~al~~---G~F~L~SG~~S~~Y~d~~~~~~~P~~~~~i~~~~~~~i~~------~~~i~G~~~ggip~a   73 (174)
T PRK13812          3 TDDLVAALRDADAVQF---GEFELSHGGTSEYYVDKYLFETDPECLSAIAAAFADRIDE------DTTLAGVALGAVPLV   73 (174)
T ss_pred             HHHHHHHHHHCCCEEE---CEEEECCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHCC------CCEEECCCCCCHHHH
T ss_conf             7999999998898696---6389477885723443804417999999999999986042------163867552439999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHH
Q ss_conf             99985158717876315642011001331037334144087887322369999999986598785688887417632489
Q gi|254781011|r   93 TLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVP  172 (228)
Q Consensus        93 ~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~  172 (228)
                      +.+|..+++|++|+||++|+||+++++||.+.+|+||+|||||+|||+|+++++++++++|++|.+++|++  ||.+++.
T Consensus        74 ~~ia~~~~~p~~~vRke~K~hG~~~~ieG~~~~g~rVlivEDViTTG~S~~eai~~l~~~G~~V~~v~viv--DR~eg~~  151 (174)
T PRK13812         74 AATATEAGVPYVIARKQAKEYGTGNRIEGRLDDGEEVVVLEDIATTGQSAVDAVEALRDAGATVNRVLVVV--DREEGAR  151 (174)
T ss_pred             HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE--ECCCCHH
T ss_conf             99999829988999843677664430313235786699998644578019999999998799799999999--7785658


Q ss_pred             HHHHHCCCEEEEECCHHHHHH
Q ss_conf             999977980999632999999
Q gi|254781011|r  173 ARFRENNIKLHYLATWNDILT  193 (228)
Q Consensus       173 ~~l~~~gi~~~sl~t~~~il~  193 (228)
                      ++++++|+++|||+|++||+.
T Consensus       152 e~l~~~gv~~~sl~t~~dlla  172 (174)
T PRK13812        152 ENLAEHDVEMEALVTASDLLA  172 (174)
T ss_pred             HHHHHCCCEEEEEECHHHHHC
T ss_conf             999977980999702999714


No 7  
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=100.00  E-value=0  Score=337.27  Aligned_cols=169  Identities=29%  Similarity=0.451  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH
Q ss_conf             99999999986597682078986731187264014262135798999999999999866421756667899822312578
Q gi|254781011|r   12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPF   91 (228)
Q Consensus        12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~   91 (228)
                      |+++++++|++++|++|   |||+|+||++||||||||+++++|+.+..++..+++    .   .++|.|+|||+||||+
T Consensus         1 M~~~~~e~L~~~~al~~---G~F~L~SG~~S~~Y~d~~~~~~~P~~~~~i~~~l~~----~---~~~d~I~G~a~ggipl   70 (170)
T PRK13811          1 MVNTIADLLISYKAIEF---GDFTLASGAKSTYYIDIKTAITSPAILKEIAAEVAK----S---YDFDAVAGVAVGGVPL   70 (170)
T ss_pred             CHHHHHHHHHHCCCEEE---CCEEECCCCCCCEEECCCHHHCCHHHHHHHHHHHHC----C---CCCCEEECCCHHHHHH
T ss_conf             91899999997899696---968817647785025490366499999999999853----7---7988997141007999


Q ss_pred             HHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHH
Q ss_conf             89998515871787631564201100133103733414408788732236999999998659878568888741763248
Q gi|254781011|r   92 ATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEV  171 (228)
Q Consensus        92 a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~  171 (228)
                      |+.+|..+++|++|+||++|+||+++++||.+ +|+||+|||||+|||+|+++++++++++|++|++++|++  ||.+++
T Consensus        71 a~~va~~~~~p~~~vRke~K~~G~~~~ieG~~-~G~~VlvVEDViTTG~S~~e~i~~l~~~G~~V~~v~~iv--DR~eg~  147 (170)
T PRK13811         71 AVAVSLASDKPYAIIRKEQKDHGKASLIIGDV-AGKRVLLVEDVTTSGGSALYGIEQLRSAGAVVDDVVTVV--DREEGA  147 (170)
T ss_pred             HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE--ECCCCH
T ss_conf             99999983998799997455413455201234-899899999644578118999999998899799999999--777477


Q ss_pred             HHHHHHCCCEEEEECCHHHHHH
Q ss_conf             9999977980999632999999
Q gi|254781011|r  172 PARFRENNIKLHYLATWNDILT  193 (228)
Q Consensus       172 ~~~l~~~gi~~~sl~t~~~il~  193 (228)
                      .+++++.|+++|||+|++|+++
T Consensus       148 ~e~l~~~Gv~~~sl~t~~dlld  169 (170)
T PRK13811        148 EELLAELDITLTPLVRVSELLN  169 (170)
T ss_pred             HHHHHHCCCEEEEEEEHHHHHC
T ss_conf             9999966990999532899428


No 8  
>TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=100.00  E-value=0  Score=328.16  Aligned_cols=170  Identities=32%  Similarity=0.579  Sum_probs=157.8

Q ss_pred             HHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf             99986597682078986731187264014262135798999999999999866421756667899822312578899985
Q gi|254781011|r   18 KMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAE   97 (228)
Q Consensus        18 ~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~   97 (228)
                      ++|++++|++|+|..||+|+||++||||||.++..+.|+.++.+...++..+.+++  +++|+|+|+|++|||+|+++|.
T Consensus         1 ~~lle~~al~frPG~PF~L~SG~~S~yy~d~kl~~t~~~~~~~~~~~~~~~~~~~l--Pe~d~iaG~alggiPiA~~vs~   78 (187)
T TIGR00336         1 ELLLEVQALKFRPGEPFILSSGRKSPYYFDIKLANTGPELANLIAEYIAAIIKDHL--PEFDVIAGPALGGIPIATAVSV   78 (187)
T ss_pred             CCCCCCCEEEECCCCCCEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHH
T ss_conf             93100330452685963416886055378212301668999999999999864128--9524664242352258999999


Q ss_pred             HCCCC---------EEEEECCCCCCHHHHHHHH-CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf             15871---------7876315642011001331-0373341440878873223699999999865987856888874176
Q gi|254781011|r   98 RLNLP---------MIYVRKKSKKHGQKSQIEG-HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDI  167 (228)
Q Consensus        98 ~l~~p---------~~~vRK~~K~hG~~~~iEG-~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~  167 (228)
                      .+..|         ++|+|||+|+||+++.||| ...+|+||+|||||+|||+|+++|++.|+++|++|.++++++||+ 
T Consensus        79 ~~~~~~~~kf~~~~~~~~RKe~KdhG~g~~i~GP~~~eG~kvvvveDV~TtG~s~~~A~~~i~~ag~~V~~v~~~vDR~-  157 (187)
T TIGR00336        79 KLAKPEGSKFLDIPLLIVRKEAKDHGEGGNIEGPELLEGDKVVVVEDVITTGGSILEAVEAIQEAGGEVAGVIVIVDRQ-  157 (187)
T ss_pred             HHHCCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECC-
T ss_conf             9835588600050489983361455689814567657896389995143424799999999986188899999998267-


Q ss_pred             CH------HHHHHHHHC-CCEEEEECCHHHH
Q ss_conf             32------489999977-9809996329999
Q gi|254781011|r  168 FP------EVPARFREN-NIKLHYLATWNDI  191 (228)
Q Consensus       168 ~~------~~~~~l~~~-gi~~~sl~t~~~i  191 (228)
                       +      +|.+++.+. |+++.||+++.|+
T Consensus       158 -e~~~~E~~A~~~f~~~y~~~~~sl~~~~d~  187 (187)
T TIGR00336       158 -ERGKGELSAGQEFEKEYGLPLISLITLKDL  187 (187)
T ss_pred             -CCCCCCCCHHHHHHHHHCCEEEEEEEEECC
T ss_conf             -243310133455465528644323132129


No 9  
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273   This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=100.00  E-value=4.6e-35  Score=249.51  Aligned_cols=165  Identities=23%  Similarity=0.326  Sum_probs=143.3

Q ss_pred             HHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf             99999865976820789867311872640142621357989999999999998664217566678998223125788999
Q gi|254781011|r   16 VAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLL   95 (228)
Q Consensus        16 ~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~i   95 (228)
                      +-+++-++||..   +|||.|+||+|||||+|+.+++.+|+....+++.|+++|.....  ++|.|+|||+|||.+++.+
T Consensus         2 v~~~y~~aGA~~---EGhFlLsSG~hS~~flQ~~~ll~~P~~~~~lg~~LA~~i~~~~~--~~d~ivsPA~GGv~~~Ye~   76 (205)
T TIGR01367         2 VLDIYKKAGALL---EGHFLLSSGKHSPYFLQSAKLLEDPELAEKLGEELAKKILKYKL--EVDVIVSPAMGGVILGYEV   76 (205)
T ss_pred             HHHHHHHCCCCC---CCCEEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--CCCEEECCCCCHHHHHHHH
T ss_conf             358887717421---37122405761423665656761636899999999999998278--7015864730004688899


Q ss_pred             HHHCC-----CCEEEEECCCCCCHHHHHHHH-CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH
Q ss_conf             85158-----717876315642011001331-037334144087887322369999999986598785688887417632
Q gi|254781011|r   96 AERLN-----LPMIYVRKKSKKHGQKSQIEG-HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP  169 (228)
Q Consensus        96 A~~l~-----~p~~~vRK~~K~hG~~~~iEG-~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~  169 (228)
                      |..++     +|++|+-|+.  .|..++.+| .+++|++|++||||+|||+|++++|++|++.|++|+++++|+||+ |.
T Consensus        77 AR~L~etlPd~R~iF~Er~g--sg~mkLRrgF~v~pGek~v~vEDvvTTGGS~~e~~~~i~~~GG~vvg~a~iidRG-fC  153 (205)
T TIGR01367        77 ARALSETLPDVRSIFAEREG--SGGMKLRRGFEVKPGEKVVVVEDVVTTGGSLLEAIKAIEELGGQVVGLACIIDRG-FC  153 (205)
T ss_pred             HHHHHHCCCCCCEEEEEEEC--CCCCEECCCEEECCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEHHCCC-HH
T ss_conf             98741006888526777607--8752011120336997799996211047448999999985798279842112041-11


Q ss_pred             HHHHHH---------HHCCCEEEEECCHH
Q ss_conf             489999---------97798099963299
Q gi|254781011|r  170 EVPARF---------RENNIKLHYLATWN  189 (228)
Q Consensus       170 ~~~~~l---------~~~gi~~~sl~t~~  189 (228)
                      . -++.         .+.|+|+.||..++
T Consensus       154 a-ven~~sPrkd~~k~~~g~PL~sL~~L~  181 (205)
T TIGR01367       154 A-VENSKSPRKDGGKVDVGVPLISLKELE  181 (205)
T ss_pred             H-HHCCCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf             1-110368632478888775156564236


No 10 
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.92  E-value=9.1e-25  Score=182.35  Aligned_cols=169  Identities=19%  Similarity=0.224  Sum_probs=137.9

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             89897899999999998659768207898673118726401426213579899999999999986642175666789982
Q gi|254781011|r    5 YFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGG   84 (228)
Q Consensus         5 ~~~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~   84 (228)
                      ..-|+.+++++++.||+....      +  ..++-.-.++|+|+|.+-+++..+..|+..|++++.++....+||.|+|+
T Consensus        23 eIAdELnvS~eT~~WLl~~~~------~--~~~~~~P~Di~v~W~sig~~~~Rl~~Ia~~maD~~~e~~~~~evD~vvGI   94 (201)
T PRK02277         23 EIADELNVSRETATWLLTRSK------K--LEKAPAPKDIHIDWSSVGKSSSRLRYIALAMADMLLLNKEGVEVDVVVGI   94 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHCCC------C--CCCCCCCCCEEECCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             635554026999999983476------7--66788996268778255777789999999999999875337876479875


Q ss_pred             CCCHHHHHHHHHHHCCCCEEE------EECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             231257889998515871787------63156420110013310373341440878873223699999999865987856
Q gi|254781011|r   85 ETAGIPFATLLAERLNLPMIY------VRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD  158 (228)
Q Consensus        85 a~~Gip~a~~iA~~l~~p~~~------vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~  158 (228)
                      +++|||||+++|..++..|..      .|++.|.||..+..-|.+ .|+||+|||||+|||+|+.+++++++++|+++++
T Consensus        95 a~~GIPlAt~vA~~l~~~l~iy~P~k~~~~e~~~~G~~s~nfa~V-~Gk~VlIVDDViTTG~T~~e~ie~l~~~Ga~vv~  173 (201)
T PRK02277         95 AISGVPLATLMADELGKDLAIYHPKKHQHDEGKKTGSISRNFASV-AGKRCVIVDDVITSGNTMKETIEYLKEHGAKPVA  173 (201)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf             236841899999985276115613555666678776213410343-7878999970237782499999999986997999


Q ss_pred             EEEEEECCCCHHHHHHHHHCCCEEEEECCH
Q ss_conf             888874176324899999779809996329
Q gi|254781011|r  159 GIGLFFYDIFPEVPARFRENNIKLHYLATW  188 (228)
Q Consensus       159 ~~vii~~~~~~~~~~~l~~~gi~~~sl~t~  188 (228)
                      ++|++|+.   +..   +-.|+|++||+..
T Consensus       174 ~~VlvDk~---g~~---ei~gVPl~sLiri  197 (201)
T PRK02277        174 VVVLVDKR---GID---EIDGVPVESLFRI  197 (201)
T ss_pred             EEEEEECC---CCC---CCCCCCCHHEEEE
T ss_conf             99999789---886---4569763233898


No 11 
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764    Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes.  AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate  ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=99.90  E-value=1.6e-23  Score=174.32  Aligned_cols=154  Identities=25%  Similarity=0.410  Sum_probs=134.1

Q ss_pred             CEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--EEEEECCCHHHHHHHHHHHCCCC
Q ss_conf             7682078986731187264014262135798999999999999866421756667--89982231257889998515871
Q gi|254781011|r   25 AVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESID--IIAGGETAGIPFATLLAERLNLP  102 (228)
Q Consensus        25 ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d--~I~G~a~~Gip~a~~iA~~l~~p  102 (228)
                      +||-.|+-|   +-|.   .|-|-..++.+|+.++.+++.|++.+.+...  .+|  .|+|++.+|.-|++++|++||+|
T Consensus         4 ~Ir~ipDfP---~~GI---lFrDITplL~~~~~f~~~id~l~~~~~~~~~--~id~d~iVG~EaRGFifG~~LA~~LgvG   75 (175)
T TIGR01090         4 SIRSIPDFP---KKGI---LFRDITPLLNNPELFRFLIDLLVERYKDANG--EIDADLIVGLEARGFIFGAALAYKLGVG   75 (175)
T ss_pred             CCCCCCCCC---CCCE---EEEECCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHHHHHCCC
T ss_conf             256257887---7966---7766170106877899999999999986079--5151368767667257788999970898


Q ss_pred             EEEEECCCC------------CCHHHHHHH---HCCC-CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC
Q ss_conf             787631564------------201100133---1037-334144087887322369999999986598785688887417
Q gi|254781011|r  103 MIYVRKKSK------------KHGQKSQIE---GHLF-KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD  166 (228)
Q Consensus       103 ~~~vRK~~K------------~hG~~~~iE---G~~~-~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~  166 (228)
                      |+-|||..|            +||+. .+|   ..++ +|+|||||||++.||||+..++++|++.|++|++++-++.-.
T Consensus        76 FVPVRK~GKLP~~t~~~~Y~LEYG~d-~lEIh~DA~~~~g~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~aFliEL~  154 (175)
T TIGR01090        76 FVPVRKPGKLPGETVSASYDLEYGKD-SLEIHKDAIKIPGQRVLIVDDLLATGGTAEATLELIKKLGGEVVEAAFLIELK  154 (175)
T ss_pred             EEEEECCCCCCCCEEEEEECEECCCC-EEEEEHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECC
T ss_conf             06754787668422667403004730-35341113640789089983220126789999999998596168745554224


Q ss_pred             CCHHHHHHHHHCCCEEEEECCH
Q ss_conf             6324899999779809996329
Q gi|254781011|r  167 IFPEVPARFRENNIKLHYLATW  188 (228)
Q Consensus       167 ~~~~~~~~l~~~gi~~~sl~t~  188 (228)
                       +-.|+++|++.+++++||+.+
T Consensus       155 -~L~G~~~L~~~~~~~~~Ll~~  175 (175)
T TIGR01090       155 -DLNGRKKLEPNGVPVFSLLEY  175 (175)
T ss_pred             -CCCCHHHHHCCCCCEEEEEEC
T ss_conf             -478521001036857898509


No 12 
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.90  E-value=1.5e-23  Score=174.50  Aligned_cols=144  Identities=23%  Similarity=0.327  Sum_probs=125.3

Q ss_pred             ECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC-----
Q ss_conf             118726401426213579899999999999986642175666789982231257889998515871787631564-----
Q gi|254781011|r   37 TSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK-----  111 (228)
Q Consensus        37 ~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K-----  111 (228)
                      +-|.   .|-|...++.+|+.++.+++.+++.+..    .++|+|+|++.+|+++|+++|.++++||+++||+.|     
T Consensus        17 ~~Gi---~F~Ditpll~dp~~~~~~~~~l~~~~~~----~~vD~IvgiEarGfi~a~alA~~l~~p~v~iRK~gKLPg~~   89 (174)
T PRK02304         17 KPGI---LFRDITPLLADPEALREVIDALVERYKD----ADIDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPGET   89 (174)
T ss_pred             CCCC---EEEECHHHHCCHHHHHHHHHHHHHHHCC----CCCCEEEEECCCCEECCHHHHHHHCCCEEEEECCCCCCCCE
T ss_conf             9994---6885824765999999999999998434----89989999865552101588998299879997289899856


Q ss_pred             -------CCHHHHH-H-HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEE
Q ss_conf             -------2011001-3-310373341440878873223699999999865987856888874176324899999779809
Q gi|254781011|r  112 -------KHGQKSQ-I-EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKL  182 (228)
Q Consensus       112 -------~hG~~~~-i-EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~  182 (228)
                             +||+... + .+.+.+|+||+||||+++||||+..++++++++|++|++++++++.. +.+++++|+ .|+++
T Consensus        90 ~s~~y~lEYG~~~lei~~~~i~~g~~VlivDDvlaTGGT~~a~~~Lv~~~ga~v~~~~~liel~-~l~G~~~L~-~~~~v  167 (174)
T PRK02304         90 ISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELP-DLGGREKLE-AGYPV  167 (174)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCEEEEEEEEEECC-CCCCHHHHC-CCCCE
T ss_conf             4512673676216999823558999999997154307179999999998799899999999818-788488746-99946


Q ss_pred             EEECCHH
Q ss_conf             9963299
Q gi|254781011|r  183 HYLATWN  189 (228)
Q Consensus       183 ~sl~t~~  189 (228)
                      +||+.++
T Consensus       168 ~sLi~y~  174 (174)
T PRK02304        168 YSLVKFE  174 (174)
T ss_pred             EEEEEEC
T ss_conf             8999869


No 13 
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.88  E-value=2.1e-22  Score=166.92  Aligned_cols=147  Identities=20%  Similarity=0.206  Sum_probs=112.2

Q ss_pred             EECCCCCCEEEE---CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             311872640142---62135798999999999999866421756667899822312578899985158717876315642
Q gi|254781011|r   36 LTSGIVSPLYID---CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKK  112 (228)
Q Consensus        36 L~SG~~Sp~Y~d---~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~  112 (228)
                      .+||. .+||+.   --.=...|+.+..++..+.+    ..+ .++|.|+|+|++|||+|+++|...++|++++||.+.+
T Consensus        10 v~~g~-~~~~ihpitDgvP~l~p~~l~~i~~~ii~----~~D-~~iDkIv~iEa~GipiatalSl~t~iPlviiRKr~yg   83 (184)
T PRK12560         10 VNSGK-ALTTVNEFTDQLPALRPAVLLEVAHKVIQ----IID-MDIDKIVTEEDKGAPLATAVSLLSGKPLAMARWYPYS   83 (184)
T ss_pred             EECCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHH----HCC-CCCCEEEEHHHCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             65065-42475676688757798999999999998----616-6876897413356388999999759988999814678


Q ss_pred             --------------CHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH-HHH
Q ss_conf             --------------01100133103733414408788732236999999998659878568888741763248999-997
Q gi|254781011|r  113 --------------HGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR-FRE  177 (228)
Q Consensus       113 --------------hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~-l~~  177 (228)
                                    |.++....+.+.+|+||+|||||++||||+..++++++++|++|+++++++++. ++.|+++ +++
T Consensus        84 l~~~~e~~~~~~Tgys~g~iy~n~I~~GdrVlIVDDvlaTGGTl~a~~~ll~~~Ga~V~~i~~vIEk~-~~~Gr~~l~~~  162 (184)
T PRK12560         84 LSELNNNVVNISSEYFEGVVYLNGISAGDRVAIIDDTLSTGGTVIALIKAIQNSGGIVKDLICAVEKI-QNNGKKNIFTQ  162 (184)
T ss_pred             CCCCCEEEEEEECCEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECC-CCCCHHHHHHC
T ss_conf             88785288875155577689704679999899995120567589999999998699899999999816-65657777552


Q ss_pred             CCCEEEEECCHH
Q ss_conf             798099963299
Q gi|254781011|r  178 NNIKLHYLATWN  189 (228)
Q Consensus       178 ~gi~~~sl~t~~  189 (228)
                      .|+++.||.+++
T Consensus       163 ~G~~v~sLv~I~  174 (184)
T PRK12560        163 TGINVKTLMKIS  174 (184)
T ss_pred             CCCCEEEEEEEE
T ss_conf             598458999999


No 14 
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.86  E-value=6.5e-21  Score=157.21  Aligned_cols=139  Identities=22%  Similarity=0.311  Sum_probs=118.8

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH----
Q ss_conf             1426213579899999999999986642175666789982231257889998515871787631564201100133----
Q gi|254781011|r   45 YIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE----  120 (228)
Q Consensus        45 Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iE----  120 (228)
                      |+|+..++++|..++++...++..+..    .++|.|..+|++|||+|+++|..++.|++++||. |+-|..+.++    
T Consensus        83 yid~s~il~dP~~L~l~~~~~a~rF~~----~~idkVlT~at~GIplA~~~A~~l~vplviakk~-k~~~~~~~~~~~v~  157 (238)
T PRK08558         83 YVDNMSVVSDPSLLRLYEEYVAERFMG----LRVDKVLTAATDGIPLAVAAASRFGADLVYAKQY-KEPGVEKFYEEYQY  157 (238)
T ss_pred             EEEEHHHHCCHHHHHHHHHHHHHHHCC----CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEC-CCCCCCCEEEEEEE
T ss_conf             697278756989999999999998177----8985899846888539999999809978999813-67774652899997


Q ss_pred             -------------HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECC
Q ss_conf             -------------1037334144087887322369999999986598785688887417632489999977980999632
Q gi|254781011|r  121 -------------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLAT  187 (228)
Q Consensus       121 -------------G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t  187 (228)
                                   ..+.+|+||+||||++.||+|+..++++++++|++|+|+++++..+ ..++++.++++|+++.+|++
T Consensus       158 ~~~~~~~tl~l~k~~l~~g~~VLIVDD~~~tG~T~~~~~~l~~~~ga~v~G~~~li~~~-~~~~~~~~e~~~~pV~~l~~  236 (238)
T PRK08558        158 LASGRPVTLYLPAWALKRGERVLIVDDIIRSGETQRALLELCRQAGADVVGVFFLIAVG-DVGIDRLREEYNFPVDALYT  236 (238)
T ss_pred             CCCCCEEEEEEEHHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEECC-CHHHHHHHHHCCCCEEEEEE
T ss_conf             48995799995589979998699983563437389999999998699799999999847-33778888761996589985


Q ss_pred             HH
Q ss_conf             99
Q gi|254781011|r  188 WN  189 (228)
Q Consensus       188 ~~  189 (228)
                      ++
T Consensus       237 ~e  238 (238)
T PRK08558        237 LE  238 (238)
T ss_pred             CC
T ss_conf             39


No 15 
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.86  E-value=1.4e-20  Score=155.06  Aligned_cols=133  Identities=19%  Similarity=0.241  Sum_probs=113.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC-----------CH-HHHHH--
Q ss_conf             98999999999999866421756667899822312578899985158717876315642-----------01-10013--
Q gi|254781011|r   54 FVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKK-----------HG-QKSQI--  119 (228)
Q Consensus        54 ~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~-----------hG-~~~~i--  119 (228)
                      +|.+++.+.+.+++.+..    .++|.|+++|++|||+|+++|..+++|++++||..+-           |+ +++..  
T Consensus        31 Dp~l~~~iG~~fa~~F~~----~~IdkIvTiEasGI~~A~~~A~~l~vPlV~aRK~~~~t~~~~~~~~~v~S~Tk~~~~~  106 (189)
T PRK09219         31 DPKLMNEIGKEFARRFKD----AGITKILTIEASGIAPAVMAALALGVPVVFAKKKKSLTLTDNVYTATVYSFTKQVTST  106 (189)
T ss_pred             CHHHHHHHHHHHHHHHCC----CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEE
T ss_conf             999999999999998457----8998899984158578999999859999999736886788976899999315670899


Q ss_pred             --H--HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHH
Q ss_conf             --3--10373341440878873223699999999865987856888874176324899999779809996329999
Q gi|254781011|r  120 --E--GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI  191 (228)
Q Consensus       120 --E--G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~i  191 (228)
                        .  -.+.+|+||+||||+++||+|+...+++++++||+|+++.+++... |++|++.+++.|++++||+.++.+
T Consensus       107 ~~vsk~~l~~gdrVliIDDflatGgt~~~~~~l~~~~ga~v~g~~~viEk~-fq~Gr~~l~~~g~~v~sLa~I~~~  181 (189)
T PRK09219        107 VSVSKKFLSEEDKVLIIDDFLANGQAALGLIDIIEQAGAEVAGVGIVIEKS-FQDGRKLLEDKGYRVESLARIASL  181 (189)
T ss_pred             EEEEHHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEEEC-CCCHHHHHHHCCCCEEEEEEEEEE
T ss_conf             997465479987599874545446789999999998799899999999936-756389998789966989999997


No 16 
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.83  E-value=4.6e-20  Score=151.67  Aligned_cols=144  Identities=24%  Similarity=0.384  Sum_probs=119.8

Q ss_pred             ECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC----
Q ss_conf             1187264014262135798999999999999866421756667899822312578899985158717876315642----
Q gi|254781011|r   37 TSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKK----  112 (228)
Q Consensus        37 ~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~----  112 (228)
                      ++|.   .|+|.-.++++|......++.+++.+..    .++|.|+|++.+|+|+|+++|.++++||+++||..|-    
T Consensus        20 ~~g~---~f~d~~~~~~~~~~~~~~i~~~~~~~~~----~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~   92 (179)
T COG0503          20 KGGI---LFVDITLLLGDPELLAKLIDELAERYKD----DGIDKIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEES   92 (179)
T ss_pred             CCCE---EEEEECHHHCCCHHHHHHHHHHHHHHCC----CCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf             7771---6897104426717899999999998400----59989999737784049999998599889999568788643


Q ss_pred             --------CHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEE
Q ss_conf             --------01100--13310373341440878873223699999999865987856888874176324899999779809
Q gi|254781011|r  113 --------HGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKL  182 (228)
Q Consensus       113 --------hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~  182 (228)
                              +|...  ...+.+.+|+||+||||++.||||+...+++++++|++|+++.+++... +..++..+...++++
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~-~~~gr~~l~~~~~~v  171 (179)
T COG0503          93 VVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELG-ELDGRKKLEDDGLPV  171 (179)
T ss_pred             EEEEEEECCCEEEEEEEHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEC-CCCCCEECCCCCEEE
T ss_conf             5789986064179998720068999899996540156789999999998899899999999724-555502034586227


Q ss_pred             EEECCH
Q ss_conf             996329
Q gi|254781011|r  183 HYLATW  188 (228)
Q Consensus       183 ~sl~t~  188 (228)
                      .++..+
T Consensus       172 ~~l~~~  177 (179)
T COG0503         172 FSLVRI  177 (179)
T ss_pred             EEEEEC
T ss_conf             997611


No 17 
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.82  E-value=6.1e-20  Score=150.88  Aligned_cols=167  Identities=20%  Similarity=0.346  Sum_probs=129.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             89897899999999998659768207898673118726--4014262135798999999999999866421756667899
Q gi|254781011|r    5 YFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVS--PLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIA   82 (228)
Q Consensus         5 ~~~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~S--p~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~   82 (228)
                      ..-|+.+.+.+++.||+. ++        |+ .-+..+  ++|+|+|.+-..+..+..|..+|++++.+... .++|.|+
T Consensus        23 EIAdELNvSreTa~WL~~-r~--------~~-~~~~~~p~Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~-~evDvVv   91 (203)
T COG0856          23 EIADELNVSRETATWLLT-RA--------FK-KESVPAPVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVS-FEVDVVV   91 (203)
T ss_pred             HHHHHHCCHHHHHHHHHH-HH--------HH-CCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf             767664104877888875-44--------31-1478887525873267256347899999999889998605-4046899


Q ss_pred             EECCCHHHHHHHHHHHCCCCE-EEE-ECCCCCCHHH--HHHHHCC--CCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             822312578899985158717-876-3156420110--0133103--733414408788732236999999998659878
Q gi|254781011|r   83 GGETAGIPFATLLAERLNLPM-IYV-RKKSKKHGQK--SQIEGHL--FKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII  156 (228)
Q Consensus        83 G~a~~Gip~a~~iA~~l~~p~-~~v-RK~~K~hG~~--~~iEG~~--~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V  156 (228)
                      |+|..|+|+|+++|+.|+..| +|. ||..|+-|..  +.+--+|  .+|+||+|||||+|||.|+.++|+.|+++|++.
T Consensus        92 GIa~sGvPlAt~vA~elg~elaiY~PrK~~~de~~~~~G~iS~NFasV~gK~cvIVDDvittG~Ti~E~Ie~l~e~g~kP  171 (203)
T COG0856          92 GIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKP  171 (203)
T ss_pred             EEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             88506862899999973784699813566543357767623123211157548998322256721999999999759974


Q ss_pred             EEEEEEEECCCCHHHHHHHHHCCCEEEEECCH
Q ss_conf             56888874176324899999779809996329
Q gi|254781011|r  157 QDGIGLFFYDIFPEVPARFRENNIKLHYLATW  188 (228)
Q Consensus       157 ~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~  188 (228)
                      +.|.|+++..   +..   +=.|+++.||+.+
T Consensus       172 v~v~VL~dK~---G~~---ei~gvPi~sLiri  197 (203)
T COG0856         172 VLVVVLADKK---GVD---EIEGVPVESLLRI  197 (203)
T ss_pred             EEEEEEECCC---CCC---CCCCCCHHHHHHE
T ss_conf             7999997267---765---3368445784420


No 18 
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.81  E-value=2e-19  Score=147.59  Aligned_cols=117  Identities=24%  Similarity=0.390  Sum_probs=98.1

Q ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH----
Q ss_conf             1426213579899999999999986642175666789982231257889998515871787631564201100133----
Q gi|254781011|r   45 YIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE----  120 (228)
Q Consensus        45 Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iE----  120 (228)
                      .+..-.++.+++..+..++.++..+.     .++|+|+|++++|||+|+.+|.++++||+++||..|.|......+    
T Consensus        25 ~ia~~~~lGD~El~~~~a~~la~~~p-----~~vD~Ivt~EarGiplA~~lA~~Lg~p~V~vRK~~K~ym~~~~~~~~~S   99 (178)
T PRK07322         25 AIASFVILGDTELTEAAAEALAPRLP-----TEVDVLVTAEAKGIPLAHELSRILGLPYVVARKSVKPYMQDPLIQEVLS   99 (178)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHCC-----CCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEE
T ss_conf             58999971878999999999997679-----9887999864314588999999979998999857876788877899888


Q ss_pred             ------------H---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC
Q ss_conf             ------------1---037334144087887322369999999986598785688887417
Q gi|254781011|r  121 ------------G---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD  166 (228)
Q Consensus       121 ------------G---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~  166 (228)
                                  +   ...+|+||+|||||++||||+..+.++++++|++|+++++++..+
T Consensus       100 itt~~~q~l~ld~~~~~~l~G~rVlivDDvi~tGgt~~a~~~l~~~~Ga~vvg~~ai~~eG  160 (178)
T PRK07322        100 ITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGSLTAMERLVERAGGEVVAKAAILAEG  160 (178)
T ss_pred             EEECCCEEEEEECHHHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHCCCEEEEEEEEEEEC
T ss_conf             7504553898500022113798599996344238379999999998699899999999756


No 19 
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078   This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=99.76  E-value=1.5e-18  Score=141.89  Aligned_cols=161  Identities=24%  Similarity=0.369  Sum_probs=128.0

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf             97899999999998659768207898673118726401426213579899999999999986642175666789982231
Q gi|254781011|r    8 QQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETA   87 (228)
Q Consensus         8 ~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~   87 (228)
                      +..++=+++-+.|-+..=|  -| |.|.+.+=           +++.|...++++..++..+.+.    ++|+|.++||+
T Consensus        77 ~~~~fv~~l~~~l~~s~Ri--~P-GgflY~~D-----------ll~~Psi~ski~~ila~~F~d~----~ID~V~TV~TK  138 (269)
T TIGR01743        77 EAKEFVEELCEKLSESERI--LP-GGFLYLTD-----------LLFKPSILSKIGKILASVFIDK----EIDAVMTVETK  138 (269)
T ss_pred             HHHHHHHHHHHHHCCCCCC--CC-CCHHHHHH-----------HHCCCCHHHHHHHHHHHHCCCC----CCCEEEEEECC
T ss_conf             5688999999862288840--37-74755534-----------5417815777888875432685----57878995218


Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCC---------CC--HHH-HHHHH------CCCCCCCEEEHHHHHHHHHHHHHHHHHH
Q ss_conf             257889998515871787631564---------20--110-01331------0373341440878873223699999999
Q gi|254781011|r   88 GIPFATLLAERLNLPMIYVRKKSK---------KH--GQK-SQIEG------HLFKGARVLVIEDLVTLGNSMFEFVKVI  149 (228)
Q Consensus        88 Gip~a~~iA~~l~~p~~~vRK~~K---------~h--G~~-~~iEG------~~~~g~~vliVDDviTtG~S~~~~i~~l  149 (228)
                      |||+|..+|..||+|++.+||..|         .|  |.. +.|+-      .+..|.|||+|||.+-.|||+-..+++|
T Consensus       139 GvPLA~~~A~~LnV~lvivRkD~kvTEGStVSiNYVSGssG~~I~~M~LarrSLk~GS~vL~vDDFmkaGGT~~Gm~~LL  218 (269)
T TIGR01743       139 GVPLAYAVAKVLNVPLVIVRKDSKVTEGSTVSINYVSGSSGDRIQKMSLARRSLKKGSKVLIVDDFMKAGGTVKGMIELL  218 (269)
T ss_pred             CHHHHHHHHHHCCCCEEEEECCCCEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHH
T ss_conf             82389899876496179998468121053289955676874367888888888860890899953555487026788888


Q ss_pred             HHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHH
Q ss_conf             8659878568888741763248999997798099963299
Q gi|254781011|r  150 RDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWN  189 (228)
Q Consensus       150 ~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~  189 (228)
                      +|..++|+|+.|++  |- +...+++.+.-+.+..|.+++
T Consensus       219 ~EFda~l~GiGVli--~~-~~~~~~~~~~Y~SLl~~~~i~  255 (269)
T TIGR01743       219 KEFDAELAGIGVLI--DN-EESEEKLVDDYVSLLKLKNIN  255 (269)
T ss_pred             HHHCCCCEEEEEEE--EC-CCCCCCHHHCCEEEEEEEEEE
T ss_conf             76271102322133--23-553100010244467877753


No 20 
>KOG1712 consensus
Probab=99.75  E-value=5.3e-18  Score=138.25  Aligned_cols=156  Identities=22%  Similarity=0.351  Sum_probs=129.9

Q ss_pred             CCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE
Q ss_conf             97682078986731187264014262135798999999999999866421756667899822312578899985158717
Q gi|254781011|r   24 KAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM  103 (228)
Q Consensus        24 ~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~  103 (228)
                      .+++..|+  |- +-|.   .|-|-..++.+|.+++.+++.+++.+++.. ..++|+|+|++.+|.-|+..+|..++.+|
T Consensus        13 ~~ir~~pd--FP-k~GI---~F~Di~pll~dP~af~~lidlf~~h~~~~~-~~~Id~iaGlEaRGFLFGP~iAlalG~~f   85 (183)
T KOG1712          13 TAIRVVPD--FP-KKGI---MFQDITPLLLDPKAFKKLIDLFVDHYRETF-EMKIDVIAGLEARGFLFGPSIALALGAGF   85 (183)
T ss_pred             HHHEECCC--CC-CCCE---EHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEEEECCEECCCHHHHHHCCCE
T ss_conf             75040789--99-8860---020006664397999999999999999873-67612998541044002838999838975


Q ss_pred             EEEECCCC------------CCHHHHH--HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH
Q ss_conf             87631564------------2011001--331037334144087887322369999999986598785688887417632
Q gi|254781011|r  104 IYVRKKSK------------KHGQKSQ--IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP  169 (228)
Q Consensus       104 ~~vRK~~K------------~hG~~~~--iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~  169 (228)
                      +-+||..|            +||+...  -.|.+++|+||+||||++.||||+..|.+++++.|++|+.++|++.-... 
T Consensus        86 VPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~L-  164 (183)
T KOG1712          86 VPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPEL-  164 (183)
T ss_pred             EECCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCEEEEEEEEEECCCC-
T ss_conf             6614689898754677876502700112112456998758998300113741899999999725478878999970653-


Q ss_pred             HHHHHHHHCCCEEEEECCHH
Q ss_conf             48999997798099963299
Q gi|254781011|r  170 EVPARFRENNIKLHYLATWN  189 (228)
Q Consensus       170 ~~~~~l~~~gi~~~sl~t~~  189 (228)
                      .|+++|  .+.++++|+++.
T Consensus       165 kGr~kL--~~~pl~~Ll~~~  182 (183)
T KOG1712         165 KGREKL--KGKPLFSLLEYQ  182 (183)
T ss_pred             CCCCCC--CCCCCEEEEECC
T ss_conf             780005--898618996147


No 21 
>PRK09213 purine operon repressor; Provisional
Probab=99.75  E-value=2.7e-17  Score=133.69  Aligned_cols=135  Identities=23%  Similarity=0.333  Sum_probs=110.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC-----------CHHH
Q ss_conf             62135798999999999999866421756667899822312578899985158717876315642-----------0110
Q gi|254781011|r   48 CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKK-----------HGQK  116 (228)
Q Consensus        48 ~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~-----------hG~~  116 (228)
                      ..-++.+|..++++...++....+    .++|+|+.+|++|||+|.++|..|++|++++||+.|-           .|..
T Consensus       105 msDil~~P~~~~~iG~~fA~~f~~----~~id~VmTveTkGIplA~~vA~~L~VP~Vi~Rk~~kvTeG~tvsinYvSgss  180 (274)
T PRK09213        105 LSDLLGNPSILRKIGRIIASAFAD----KKIDAVMTVATKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSS  180 (274)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHH----CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCC
T ss_conf             026226989999999999987515----5998899983358618999999809989999767887679708999996366


Q ss_pred             HHHH------HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHH
Q ss_conf             0133------1037334144087887322369999999986598785688887417632489999977980999632999
Q gi|254781011|r  117 SQIE------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWND  190 (228)
Q Consensus       117 ~~iE------G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~  190 (228)
                      +.++      -.+++|+|||||||.+..||++...++++++++++|+|+.+++  +-. ...+++-+   ++.||+++++
T Consensus       181 ~ri~tM~Lskr~L~~gsrVLiIDDFmk~Ggt~~Gm~~L~~Ef~a~vvGigV~i--e~~-~~~~klV~---dY~SL~~l~~  254 (274)
T PRK09213        181 KRIETMSLSKRSLKEGSNVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLV--ENK-EPEERLVD---DYVSLLKLSE  254 (274)
T ss_pred             CEEEEEEEEHHHCCCCCEEEEECHHHHCCCHHHHHHHHHHHCCCEEEEEEEEE--ECC-CCHHHHHH---HEEEEEEEEE
T ss_conf             51899998763369998399983454476088999999997198797899999--548-80330022---1014689740


Q ss_pred             HH
Q ss_conf             99
Q gi|254781011|r  191 IL  192 (228)
Q Consensus       191 il  192 (228)
                      +-
T Consensus       255 vd  256 (274)
T PRK09213        255 VD  256 (274)
T ss_pred             CC
T ss_conf             15


No 22 
>TIGR01744 XPRTase xanthine phosphoribosyltransferase; InterPro: IPR010079   This entry represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; Bacillus subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.; GO: 0016763 transferase activity transferring pentosyl groups, 0043101 purine salvage, 0046110 xanthine metabolic process.
Probab=99.72  E-value=7.8e-17  Score=130.65  Aligned_cols=137  Identities=19%  Similarity=0.230  Sum_probs=115.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-------
Q ss_conf             6213579899999999999986642175666789982231257889998515871787631564201100133-------
Q gi|254781011|r   48 CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE-------  120 (228)
Q Consensus        48 ~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iE-------  120 (228)
                      |.++  ||.+++.+++.|+..+.+.    .+..|+.+|..||..|-++|..+|+|++|+||+.-.--+.++.+       
T Consensus        27 NHQ~--d~~Lm~~vG~~Fa~~Fa~~----g~tKilTIE~SGIAPAiM~a~~l~vP~vFakK~kp~Tl~~~~lta~~~SfT  100 (191)
T TIGR01744        27 NHQI--DPKLMREVGEEFARRFADK----GITKILTIEASGIAPAIMTALELGVPVVFAKKKKPLTLTDQLLTASVHSFT  100 (191)
T ss_pred             HHCC--CHHHHHHHHHHHHHHHHCC----CCCEEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEE
T ss_conf             0013--8788999999999851115----897499980158417889878549976999827898765681689999986


Q ss_pred             -----------HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHH
Q ss_conf             -----------103733414408788732236999999998659878568888741763248999997798099963299
Q gi|254781011|r  121 -----------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWN  189 (228)
Q Consensus       121 -----------G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~  189 (228)
                                 -.+.+.+|||+|||.+..|++....+.+++++||+++|+-+|+.. .|++|+++|.+.|++++||+.+.
T Consensus       101 K~~~~~v~vS~~fL~~~D~vl~IDDFLA~G~a~~gL~~i~~qA~A~~~G~G~viEK-~Fq~Gr~~L~~~g~~v~sLA~i~  179 (191)
T TIGR01744       101 KSKTSTVIVSKEFLSDQDRVLIIDDFLANGDAARGLVDIAEQAGAKIAGIGIVIEK-SFQNGRQELEELGVRVESLAKIR  179 (191)
T ss_pred             CCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE-CCCCCHHHHHHCCCCEEEEEEEE
T ss_conf             38679999861437899889999513466616788999998619958854479981-45784699984899366237887


Q ss_pred             HH
Q ss_conf             99
Q gi|254781011|r  190 DI  191 (228)
Q Consensus       190 ~i  191 (228)
                      .|
T Consensus       180 sL  181 (191)
T TIGR01744       180 SL  181 (191)
T ss_pred             EE
T ss_conf             62


No 23 
>pfam00156 Pribosyltran Phosphoribosyl transferase domain. This family includes a range of diverse phosphoribosyl transferase enzymes. This family includes: Adenine phosphoribosyltransferase EC:2.4.2.7. Hypoxanthine-guanine-xanthine phosphoribosyltransferase. Hypoxanthine phosphoribosyltransferase EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyltransferase EC:2.4.2.10. Uracil phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis, At the very N-terminus of this domain is the ATP-GTP-binding domain.
Probab=99.69  E-value=1.9e-16  Score=128.15  Aligned_cols=112  Identities=27%  Similarity=0.422  Sum_probs=93.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC------CHHHHH----H
Q ss_conf             135798999999999999866421756667899822312578899985158717876315642------011001----3
Q gi|254781011|r   50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKK------HGQKSQ----I  119 (228)
Q Consensus        50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~------hG~~~~----i  119 (228)
                      .++.+|+..+.+++.+++.|.+..  .++|.|+|++.||+|+|+.+|..++.|+.+.|+..+.      ++.+..    .
T Consensus         2 ~ll~~~~~~~~~~~~la~~i~~~~--~~~d~ivgi~~gG~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (123)
T pfam00156         2 NLLLDPEELRELIEALAEKIREEG--IDPDVIVGIARGGIPLATALARELGIPLVLVRKRISLPSSIKSRGGESVTLLSR   79 (123)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHC--CCCCEEEECHHCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEECCCCEEEEEC
T ss_conf             332699999999999999999868--999999991118698999999986999489998876377660551772699842


Q ss_pred             HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             31037334144087887322369999999986598785688887
Q gi|254781011|r  120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus       120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii  163 (228)
                      .....+|++|+||||+++||+|+.++++.|+++|+++++++|++
T Consensus        80 ~~~~~~g~~VliVDDv~~tG~Tl~~~~~~l~~~g~~~v~~~vli  123 (123)
T pfam00156        80 LPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAVLV  123 (123)
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf             43236999999984876843899999999994799099999989


No 24 
>KOG1377 consensus
Probab=99.67  E-value=4e-17  Score=132.54  Aligned_cols=201  Identities=14%  Similarity=0.145  Sum_probs=147.4

Q ss_pred             HHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE--EEEECCCHHHH
Q ss_conf             9999999865976820789867311872640142621357989999999999998664217566678--99822312578
Q gi|254781011|r   14 ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDI--IAGGETAGIPF   91 (228)
Q Consensus        14 ~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~--I~G~a~~Gip~   91 (228)
                      ..+.+..++..|.+|   |||+|+||+|||||+|.+... +++.+..++..++..|.+...  .+|+  ++|++|+|+|+
T Consensus        37 d~~~~~~ll~~~~~~---Gpf~l~sk~h~di~~df~~~~-~~k~L~aLA~a~~f~I~edrk--ffDigntvg~qY~gg~~  110 (261)
T KOG1377          37 DLFLERELLQLALRF---GPFILKSKTHSDIFFDFSLFN-SGKDLRALAQAYAFLIFEDRK--FFDIGNTVGLQYKGGPL  110 (261)
T ss_pred             HHHHHHHHHHHHHHH---CCEEEECCCCCCEEECCCCCC-CHHHHHHHHHHHHHHHHHHHH--CCCCCCEECCCCCCCHH
T ss_conf             999999999999964---975863166573012352001-379999999988899885421--03511100310055217


Q ss_pred             HHHH-HHHC---CCC-----EEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             8999-8515---871-----787631564201100133103733414408788732236999999998659878568888
Q gi|254781011|r   92 ATLL-AERL---NLP-----MIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL  162 (228)
Q Consensus        92 a~~i-A~~l---~~p-----~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vi  162 (228)
                      +++. |...   ++|     ..|.||+.|+||.++.+-+.--+++++|+.+|+.++|..+.+.  .+.-..+.|++..+.
T Consensus       111 kia~wadl~n~h~v~g~~i~~g~~rk~~k~~~egG~lllAems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~  188 (261)
T KOG1377         111 KIASWADLVNAHGVPGRGIIKGLNRKLLKDHGEGGVLLLAELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVA  188 (261)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHH--HHCHHEEEEEEEEEE
T ss_conf             888999888456856603899886500446887725999872467714602488999999984--312110488421440


Q ss_pred             EECCC---CH-----HHHHHHH-HCCCEEEEECCHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             74176---32-----4899999-779809996329999999998889998-99999999997299778860
Q gi|254781011|r  163 FFYDI---FP-----EVPARFR-ENNIKLHYLATWNDILTIAEKLKIFNH-DVLEEVRCFLDNPMQWSKKN  223 (228)
Q Consensus       163 i~~~~---~~-----~~~~~l~-~~gi~~~sl~t~~~il~~l~~~~~I~~-~~~~~I~~~l~dP~~W~~~~  223 (228)
                      ++++.   .+     .+..++. .++.+.+++.+..+.+-+. .++..++ +.+..++.||+-+|.=-.+|
T Consensus       189 ldrq~l~~tpgv~~d~~~d~lgqqy~~p~e~I~~~~~dIiiv-grglt~a~~~~~~~e~YRq~~w~a~~~r  258 (261)
T KOG1377         189 LDRQELIMTPGVELDAAGDNLGQQYRLPVEVIVSLGSDIIIV-GRGLTAASKPVQAIERYRQAYWAAYQRR  258 (261)
T ss_pred             CCHHHHCCCCCCCCCHHHCCHHHHHCCCHHHHEECCCEEEEE-CCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             567762168887633000002213167377520157618997-6864435484799999999999999875


No 25 
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.41  E-value=1.3e-12  Score=103.02  Aligned_cols=117  Identities=21%  Similarity=0.278  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC----CCEEEEECCC--------------CCCHHHHHHHH-
Q ss_conf             9999999866421756667899822312578899985158----7178763156--------------42011001331-
Q gi|254781011|r   61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN----LPMIYVRKKS--------------KKHGQKSQIEG-  121 (228)
Q Consensus        61 i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~----~p~~~vRK~~--------------K~hG~~~~iEG-  121 (228)
                      +.+.+++.+.+++.-.++|+|+|.++-|+++|..+|.+|+    +|+-|-||--              ++-|+.-++.- 
T Consensus        68 V~daLA~~lA~k~~~~~pdvv~GlpTLGl~lA~~Var~LG~~rYVplg~SrKfwy~d~Ls~~vsSITtp~~~krlylDp~  147 (233)
T PRK06031         68 VLDALAEELAAKARPFRPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYDDELSVPLSSITTPDQGKRLYIDPR  147 (233)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHCCCEECCCCCCCCCEEEECHH
T ss_conf             99999999998741569867871465540458999997097636765647753313443551000358887731567744


Q ss_pred             --CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCC
Q ss_conf             --0373341440878873223699999999865987856888874176324899999779
Q gi|254781011|r  122 --HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENN  179 (228)
Q Consensus       122 --~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~g  179 (228)
                        .+.+|+||++|||||+||.|+..+.++|+.+|++|+++.+....  -+.-++.+...|
T Consensus       148 ~lpLl~GrRV~lVDDVISSG~Si~a~l~LL~~~G~e~v~igvaM~Q--~erWre~l~a~g  205 (233)
T PRK06031        148 MLPLLRGRRVALIDDVISSGASIVAALRLLATCGIEPAGIGAAMLQ--SERWRESLAALG  205 (233)
T ss_pred             HHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEEEEHH--HHHHHHHHHHCC
T ss_conf             4124328779998212215565999999999759973788763214--456778775127


No 26 
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.24  E-value=9.5e-10  Score=84.44  Aligned_cols=151  Identities=20%  Similarity=0.321  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
Q ss_conf             999999999865976820789867311872640142621--357989999999999998664217566678998223125
Q gi|254781011|r   12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRK--LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGI   89 (228)
Q Consensus        12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~--~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gi   89 (228)
                      -++.+|++|-..|+=++   =-+.|-++..- -|||.-.  +-..|.        +.+.+.+..+..+ -+|++|..||.
T Consensus       122 sak~vA~lL~~~G~drv---itvDlH~~qiq-gfF~iPvd~l~a~~~--------~~~~~~~~~~~~~-~vVVsPD~G~~  188 (340)
T PRK00553        122 TSKLVADLLTKAGVTRV---TLTDIHSDQTQ-GFFDIPVDILRTYHV--------FLSRVLELLGKKD-LVVVSPDYGGV  188 (340)
T ss_pred             CHHHHHHHHHHCCCCEE---EEECCCHHHHH-HCCCCCCCCCCCCHH--------HHHHHHHHCCCCC-CEEECCCCCHH
T ss_conf             39999856763588569---98435658885-216998652106288--------9999998649766-48988996389


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf             7889998515871787631564201100--13310373341440878873223699999999865987856888874176
Q gi|254781011|r   90 PFATLLAERLNLPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDI  167 (228)
Q Consensus        90 p~a~~iA~~l~~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~  167 (228)
                      ..|..+|..++.|+.++.|+...++...  .+.|.+ +|+.|+||||++.||||+.++++.|+++||.-+  .+...++.
T Consensus       189 krA~~~A~~L~~~~a~~~K~R~~~~~~e~~~~iGdV-~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V--~a~aTHgv  265 (340)
T PRK00553        189 KRARLIAESLELPLAIIDKRRPKHNVAESINVLGEV-KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKV--CVMATHGL  265 (340)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE--EEEEECCC
T ss_conf             999999998299679985345789864113445554-685489525244312569999999998799879--99997951


Q ss_pred             CH-HHHHHHHHC
Q ss_conf             32-489999977
Q gi|254781011|r  168 FP-EVPARFREN  178 (228)
Q Consensus       168 ~~-~~~~~l~~~  178 (228)
                      |. .+.+++.+.
T Consensus       266 fsg~A~eri~~~  277 (340)
T PRK00553        266 FNKNAIQLFDEA  277 (340)
T ss_pred             CCHHHHHHHHHC
T ss_conf             485799999852


No 27 
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.17  E-value=9.7e-10  Score=84.38  Aligned_cols=115  Identities=13%  Similarity=0.309  Sum_probs=87.9

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHH
Q ss_conf             99986642175666789982231257889998515871787631564201100--1331037334144087887322369
Q gi|254781011|r   65 TAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSM  142 (228)
Q Consensus        65 ~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~  142 (228)
                      +++.|.+. ...+ -+|++|..||...|..+|..++.|+.++.|+..+.+...  .+.|.+ +|+.|+||||++.||||+
T Consensus       148 l~~~i~~~-~~~~-~vvVsPD~G~~~ra~~~A~~lg~~~~~~~K~R~~~~~~~~~~~iGdV-~Gk~vIIvDDiI~TGgTl  224 (309)
T PRK01259        148 LLEDIKKK-NLEN-LVVVSPDVGGVVRARALAKRLDTDLAIIDKRRPRANVSEVMNIIGDV-EGRDCILVDDMIDTGGTL  224 (309)
T ss_pred             HHHHHHHC-CCCC-CEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC-CCCEEEEECCHHHCCHHH
T ss_conf             99999863-8887-38991498689999999997299879999860688833334446775-664399976534345659


Q ss_pred             HHHHHHHHHCCCEEEEEEEEEECCCCHH-HHHHHHHCCCEEEE
Q ss_conf             9999999865987856888874176324-89999977980999
Q gi|254781011|r  143 FEFVKVIRDSGGIIQDGIGLFFYDIFPE-VPARFRENNIKLHY  184 (228)
Q Consensus       143 ~~~i~~l~~~g~~V~~~~vii~~~~~~~-~~~~l~~~gi~~~s  184 (228)
                      .++++.|+++||.-+  .++..++.|.+ +.+++.+.++.-.-
T Consensus       225 ~~aa~~Lk~~GA~~V--~~~~THglfs~~A~~rl~~s~i~~iv  265 (309)
T PRK01259        225 CKAAEALKERGAKSV--FAYATHPVLSGGAAERIANSVLDELV  265 (309)
T ss_pred             HHHHHHHHHCCCCEE--EEEEECHHCCHHHHHHHHHCCCCEEE
T ss_conf             999999975699669--99987631394599998708998899


No 28 
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.13  E-value=2.1e-09  Score=82.18  Aligned_cols=151  Identities=17%  Similarity=0.336  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEEC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH
Q ss_conf             999999998659768207898673118726401426--213579899999999999986642175666789982231257
Q gi|254781011|r   13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDC--RKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIP   90 (228)
Q Consensus        13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~--r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip   90 (228)
                      ++.+|++|-..|+=++-   .+-|-+....- |||.  ..+...|..        ++.+... ...+ -+|++|..||..
T Consensus       127 aklvA~lL~~aG~d~vi---tvDlH~~qiqg-fF~iPvd~l~a~~~l--------~~yi~~~-~~~~-~vVVsPD~G~~k  192 (331)
T PRK02812        127 AKLVANLITKAGVDRVL---AMDLHSAQIQG-YFDIPCDHIYGSPVL--------IDYLASK-NLED-IVVVSPDVGGVA  192 (331)
T ss_pred             HHHHHHHHHHCCCCEEE---EECCCHHHHHH-CCCCCCCCEECCCHH--------HHHHHHC-CCCC-CEEECCCCCHHH
T ss_conf             99999788734887588---73466288863-369974314676067--------9999862-8887-179747940899


Q ss_pred             HHHHHHHHC-CCCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf             889998515-871787631564201100--13310373341440878873223699999999865987856888874176
Q gi|254781011|r   91 FATLLAERL-NLPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDI  167 (228)
Q Consensus        91 ~a~~iA~~l-~~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~  167 (228)
                      -|..+|..+ +.|+.++.|+..+++...  .+.|.+ +|+.|+||||++.||+|+.++++.|+++||.-+  .+...++.
T Consensus       193 rA~~~A~~L~~~~~a~~~K~R~~~~~~~~~~~vGdV-~Gr~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V--~a~aTHgv  269 (331)
T PRK02812        193 RARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDV-KGKTAILVDDMIDTGGTICEGARLLRKEGAKRV--YACATHAV  269 (331)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCCEECCCCCCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE--EEEEECCC
T ss_conf             999999972799589994245788842102444554-565189962144227999999999985799878--99998965


Q ss_pred             CHH-HHHHHHHCCC
Q ss_conf             324-8999997798
Q gi|254781011|r  168 FPE-VPARFRENNI  180 (228)
Q Consensus       168 ~~~-~~~~l~~~gi  180 (228)
                      |.+ +.+++.+.++
T Consensus       270 fsg~A~~rl~~s~i  283 (331)
T PRK02812        270 FSPPAIERLSASGL  283 (331)
T ss_pred             CCHHHHHHHHHCCC
T ss_conf             58779999972897


No 29 
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.11  E-value=1.8e-09  Score=82.70  Aligned_cols=154  Identities=14%  Similarity=0.217  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECC---CCCCCHHHHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCH
Q ss_conf             9999999986597682078986731187264014262---1357989999999999998664-21756667899822312
Q gi|254781011|r   13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCR---KLISFVRARSMIMDLTAKTVLR-NIGFESIDIIAGGETAG   88 (228)
Q Consensus        13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r---~~~s~P~~~~~i~~~~~~~i~~-~~~~~~~d~I~G~a~~G   88 (228)
                      ++++|++|...|+=++   =.|-|-++..--+| +..   .+...|..    .+.+.+.... ..+. +--+|+.|..||
T Consensus       149 AkLvA~lL~~aGvdrv---iT~DLHa~qIQgfF-~i~pvDnl~~~~~~----~~~l~~~~~~~~~~~-~~~vVVSPD~Gg  219 (381)
T PRK06827        149 CALALQELEELGVDHI---LTFDIHDPNIQNAI-PLMSFENLYPSYEI----VKSLLENEKLLELDK-ENLVVISPDTGA  219 (381)
T ss_pred             HHHHHHHHHHCCCCEE---EEEECCCCCCCCCC-CCCCCCCCCCCHHH----HHHHHHHCCCCCCCC-CCCEEEECCCCC
T ss_conf             9999999997199969---99757872247787-78875467753899----999998453123686-777799269973


Q ss_pred             HHHHHHHHHHCCCCEEEEECCCC----CCHHHHHH----HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             57889998515871787631564----20110013----31037334144087887322369999999986598785688
Q gi|254781011|r   89 IPFATLLAERLNLPMIYVRKKSK----KHGQKSQI----EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI  160 (228)
Q Consensus        89 ip~a~~iA~~l~~p~~~vRK~~K----~hG~~~~i----EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~  160 (228)
                      ..-|..+|..|+.|+.++-|+..    .+|.+...    -|.-.+|+.|+||||.+.||||+..++++|++.||+-  ++
T Consensus       220 v~RA~~~A~~L~~~laii~KrR~~s~v~~~~n~i~~~~~lggdV~GK~~IIvDDmIdTggTl~~aA~~Lk~~GA~~--V~  297 (381)
T PRK06827        220 MDRAKYYSSVLKVPLGLFYKRRDYSTVVNGKNPIVVHELLGRDVEGKDVFIVDDMIASGGSVLDAAKELKSRGAKK--II  297 (381)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCE--EE
T ss_conf             8999999997198989999764676445667843675241355679889997243145268999999999879988--99


Q ss_pred             EEEECCCCHHHHHHHHH
Q ss_conf             88741763248999997
Q gi|254781011|r  161 GLFFYDIFPEVPARFRE  177 (228)
Q Consensus       161 vii~~~~~~~~~~~l~~  177 (228)
                      +...++.|.+|.+++.+
T Consensus       298 a~aTHgvfS~a~e~~~~  314 (381)
T PRK06827        298 CAVSFPFFTEGLEKFDK  314 (381)
T ss_pred             EEEECHHCCCHHHHHHH
T ss_conf             99973660476999976


No 30 
>PRK04117 consensus
Probab=99.09  E-value=3.3e-09  Score=80.88  Aligned_cols=114  Identities=18%  Similarity=0.354  Sum_probs=87.9

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHH
Q ss_conf             9998664217566678998223125788999851587178763156420110--01331037334144087887322369
Q gi|254781011|r   65 TAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSM  142 (228)
Q Consensus        65 ~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~  142 (228)
                      +++.+... ...+ .+|++|..||...|..+|..++.|+.+..|+....++.  ..+.|.+ +|+.|+||||++.||+|+
T Consensus       151 ~~~~i~~~-~~~~-~vvVsPD~Ga~~ra~~~A~~Lg~~~~~~~K~R~~~~~~~~~~~~gdV-~Gk~vIIVDDiI~TGgTi  227 (309)
T PRK04117        151 FRDYIKSK-NLKN-PIIASPDIGGVARARYFAKKLGLDMVIVDKRREKANESEVMNIIGDV-KGKDVILVDDMIDTAGTI  227 (309)
T ss_pred             HHHHHHHH-CCCC-CEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCEEEEECCHHHHHHHH
T ss_conf             78999961-8887-46971593199999999874278879985113788854323445664-898689757256527999


Q ss_pred             HHHHHHHHHCCCEEEEEEEEEECCCCH-HHHHHHHHCCCEEE
Q ss_conf             999999986598785688887417632-48999997798099
Q gi|254781011|r  143 FEFVKVIRDSGGIIQDGIGLFFYDIFP-EVPARFRENNIKLH  183 (228)
Q Consensus       143 ~~~i~~l~~~g~~V~~~~vii~~~~~~-~~~~~l~~~gi~~~  183 (228)
                      .++++.|+++||.-+  .+...++.|. .+.+++.+.+++-.
T Consensus       228 ~~aa~~L~~~GA~~V--~~~~THglfs~~A~~rl~~s~i~~i  267 (309)
T PRK04117        228 VKAAEALKEKGATSV--MACCTHAVLSGPAYERIAKGALDEL  267 (309)
T ss_pred             HHHHHHHHHCCCCEE--EEEEECCCCCCHHHHHHHHCCCCEE
T ss_conf             999999986699748--9999455458369999983899789


No 31 
>PRK05259 consensus
Probab=99.08  E-value=1.8e-09  Score=82.70  Aligned_cols=115  Identities=18%  Similarity=0.356  Sum_probs=87.7

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHH
Q ss_conf             9986642175666789982231257889998515871787631564201100--13310373341440878873223699
Q gi|254781011|r   66 AKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMF  143 (228)
Q Consensus        66 ~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~  143 (228)
                      ++.+.++....+ -+|++|-.||...|..+|..++.|+.++.|+....|+..  .+.|.+ +|+.|+||||++.||||+.
T Consensus       149 ~~~i~~~~~~~~-~vvVsPD~G~~~ra~~~a~~l~~~~~~~~K~R~~~~~~~~~~~~gdV-~Gk~~IIvDDiIdTGgTl~  226 (310)
T PRK05259        149 ARDIKARYDLGN-VMVVSPDVGGVVRARALAKRLDAPLAIVDKRRERPGESEVMNVIGDV-SGRDCILIDDIVDSGGTLC  226 (310)
T ss_pred             HHHHHHHCCCCC-EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCC-CCCEEEEECCHHHCHHHHH
T ss_conf             678986389766-39991492699999999998199678999860689954334545662-3124895173441688999


Q ss_pred             HHHHHHHHCCCEEEEEEEEEECCCCHH-HHHHHHHCCCEEEE
Q ss_conf             999999865987856888874176324-89999977980999
Q gi|254781011|r  144 EFVKVIRDSGGIIQDGIGLFFYDIFPE-VPARFRENNIKLHY  184 (228)
Q Consensus       144 ~~i~~l~~~g~~V~~~~vii~~~~~~~-~~~~l~~~gi~~~s  184 (228)
                      ++++.|+++||+-+-  +...++.|.+ +.+++.+.+++-.-
T Consensus       227 ~aa~~Lk~~GA~~V~--~~~THgvfs~~A~~ri~~s~i~~vv  266 (310)
T PRK05259        227 NAAEALLANGANSVT--AYITHGVLSGGAVARIASSKLKELV  266 (310)
T ss_pred             HHHHHHHHCCCCEEE--EEEECCCCCCHHHHHHHCCCCCEEE
T ss_conf             999999877998699--9997853685699998628997899


No 32 
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.07  E-value=3.8e-09  Score=80.52  Aligned_cols=101  Identities=21%  Similarity=0.348  Sum_probs=80.5

Q ss_pred             EEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHH-HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             899822312578899985158717876315642011-0013310373341440878873223699999999865987856
Q gi|254781011|r   80 IIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ-KSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD  158 (228)
Q Consensus        80 ~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~-~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~  158 (228)
                      +|++|..||...|..+|..++.|+.++.|...+... ...+.|.+ +|+.|+||||++.||||+.++++.|+++||+-+ 
T Consensus       172 vvVsPD~G~~~ra~~~A~~L~~~~~~i~k~r~~~~~~~~~ivgdV-~Gr~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V-  249 (323)
T PRK02458        172 VVVSPKNSGIKRARSLAEYLDSPIAIIDYAQDDSEREEGYIIGDV-SGKKAILIDDILNTGKTFAEAAKILERSGATEI-  249 (323)
T ss_pred             EEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEECCCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE-
T ss_conf             897578305688999998605871379862168974122313666-896678762023224889999999996499768-


Q ss_pred             EEEEEECCCCHH-HHHHHHHCCCEEE
Q ss_conf             888874176324-8999997798099
Q gi|254781011|r  159 GIGLFFYDIFPE-VPARFRENNIKLH  183 (228)
Q Consensus       159 ~~vii~~~~~~~-~~~~l~~~gi~~~  183 (228)
                       .++..++.|.+ +.+++.+.++.-.
T Consensus       250 -~~~~THglfs~~A~~rl~~s~i~~i  274 (323)
T PRK02458        250 -YAVASHGLFAGGAAEVLETAPIKEI  274 (323)
T ss_pred             -EEEEECCCCCHHHHHHHHCCCCCEE
T ss_conf             -9999764257079999864998689


No 33 
>PRK01999 consensus
Probab=99.07  E-value=1.9e-09  Score=82.48  Aligned_cols=102  Identities=18%  Similarity=0.307  Sum_probs=82.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             78998223125788999851587178763156420110--0133103733414408788732236999999998659878
Q gi|254781011|r   79 DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII  156 (228)
Q Consensus        79 d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V  156 (228)
                      -+|++|..||...|..+|..++.|+.+..|+..+..+-  ..+.|.+ +|+.|+||||++.||||+.++++.|+++||.-
T Consensus       164 ~vvVsPD~g~~kra~~~A~~Lg~~~~~~~K~R~~~~~v~~~~~~gdV-~Gk~~IIVDDiIdTGgTl~~aa~~L~~~GA~~  242 (311)
T PRK01999        164 LVIATPDVGGSKRASAYSKYLGVPVVICYKSREKANEIASMQIIGDV-KGKNVILVDDMVDTAGTITKAADLMMEKGAKS  242 (311)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCCCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             08981590499999999986178723311024678841131334354-79669997544443478999999998559973


Q ss_pred             EEEEEEEECCCCHH-HHHHHHHCCCEEE
Q ss_conf             56888874176324-8999997798099
Q gi|254781011|r  157 QDGIGLFFYDIFPE-VPARFRENNIKLH  183 (228)
Q Consensus       157 ~~~~vii~~~~~~~-~~~~l~~~gi~~~  183 (228)
                      +.  ++..++.|.+ +.+++.+.++.-.
T Consensus       243 V~--~~~THglfs~~A~~rl~~s~i~~i  268 (311)
T PRK01999        243 VR--AIASHAVMSGPASERVENSKLTEM  268 (311)
T ss_pred             EE--EEEECCCCCCHHHHHHHHCCCCEE
T ss_conf             89--999455458559999974899889


No 34 
>PRK02039 consensus
Probab=99.07  E-value=3.3e-09  Score=80.94  Aligned_cols=105  Identities=15%  Similarity=0.298  Sum_probs=83.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             78998223125788999851587178763156420110--0133103733414408788732236999999998659878
Q gi|254781011|r   79 DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII  156 (228)
Q Consensus        79 d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V  156 (228)
                      -+|++|..||...|..+|..++.|+.++.|+..+....  ..+.|.+ +|+.|+||||++.||||+.++++.|+++||.=
T Consensus       166 ~vvVsPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~~e~~~~igdV-~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~  244 (316)
T PRK02039        166 LLVVSPDVGGVVRARALAKQLNCDLAIIDKRRPKANVAEVMNIIGEV-EGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQ  244 (316)
T ss_pred             CEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCC-CCCEEEEECCHHHCHHHHHHHHHHHHHCCCCE
T ss_conf             38984694088999999998299979998415888703630246653-89726711725545688999999999769985


Q ss_pred             EEEEEEEECCCCHH-HHHHHHHCCCEEEEEC
Q ss_conf             56888874176324-8999997798099963
Q gi|254781011|r  157 QDGIGLFFYDIFPE-VPARFRENNIKLHYLA  186 (228)
Q Consensus       157 ~~~~vii~~~~~~~-~~~~l~~~gi~~~sl~  186 (228)
                      +  .++..++.|.+ +.+++.+.++.-.-++
T Consensus       245 V--~~~~THgvfs~~A~~rl~~s~i~~vvvT  273 (316)
T PRK02039        245 V--FAYATHPVLSGGAAERIAASALDELVVT  273 (316)
T ss_pred             E--EEEEECCCCCCHHHHHHHCCCCCEEEEE
T ss_conf             7--9999784257349999860899789993


No 35 
>PRK01506 consensus
Probab=99.07  E-value=2.8e-09  Score=81.40  Aligned_cols=105  Identities=16%  Similarity=0.306  Sum_probs=84.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             78998223125788999851587178763156420110--0133103733414408788732236999999998659878
Q gi|254781011|r   79 DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII  156 (228)
Q Consensus        79 d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V  156 (228)
                      -+|++|..||...|..+|..++.|+.++.|+....+..  ..+.|.+ +|+.|+||||++.||+|+.++++.|+++||.-
T Consensus       169 ~vVVsPD~Ga~kra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV-~Gr~vIIVDDiI~TGgTl~~aa~~Lk~~GA~~  247 (317)
T PRK01506        169 IVIVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIIGNI-EGKTAILIDDIIDTAGTITLAANALVENGASE  247 (317)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCC-CCCEEEEECCHHHCCCHHHHHHHHHHHCCCCE
T ss_conf             48990492489999999997299668898641799804630245655-79627875132213505999999998659975


Q ss_pred             EEEEEEEECCCCHH-HHHHHHHCCCEEEEEC
Q ss_conf             56888874176324-8999997798099963
Q gi|254781011|r  157 QDGIGLFFYDIFPE-VPARFRENNIKLHYLA  186 (228)
Q Consensus       157 ~~~~vii~~~~~~~-~~~~l~~~gi~~~sl~  186 (228)
                      +  .+...++.|.+ +.+++.+.++.-.-.+
T Consensus       248 V--~~~~THglfs~~A~~rl~~s~i~~iv~T  276 (317)
T PRK01506        248 V--YACCTHPVLSGPAIERIQNSKIKELVVT  276 (317)
T ss_pred             E--EEEEECCCCCCHHHHHHHCCCCCEEEEE
T ss_conf             8--9999770068179999861899889993


No 36 
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=99.07  E-value=3.7e-09  Score=80.62  Aligned_cols=150  Identities=21%  Similarity=0.368  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCE---EEECC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf             999999999865976820789867311872640---14262--1357989999999999998664217566678998223
Q gi|254781011|r   12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPL---YIDCR--KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGET   86 (228)
Q Consensus        12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~---Y~d~r--~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~   86 (228)
                      -++++|++|-..|+=+.       ++=-.|+|.   |||.-  .+...|        .+++.+.++..+.+ -+|++|..
T Consensus       109 saklvA~lL~~aG~drv-------~TvDlH~~qiqgfFdipvdnl~a~p--------~l~~~~~~~~~~~d-~vVVSPD~  172 (314)
T COG0462         109 SAKLVANLLETAGADRV-------LTVDLHAPQIQGFFDIPVDNLYAAP--------LLAEYIREKYDLDD-PVVVSPDK  172 (314)
T ss_pred             EHHHHHHHHHHCCCCEE-------EEEECCCHHHCCCCCCCCCCCCCHH--------HHHHHHHHHCCCCC-CEEECCCC
T ss_conf             29999999997299869-------9970786565566788403640459--------99999997367778-68988884


Q ss_pred             CHHHHHHHHHHHCCCCEEEEECCCC-CCH--HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             1257889998515871787631564-201--1001331037334144087887322369999999986598785688887
Q gi|254781011|r   87 AGIPFATLLAERLNLPMIYVRKKSK-KHG--QKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus        87 ~Gip~a~~iA~~l~~p~~~vRK~~K-~hG--~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii  163 (228)
                      ||+.-|..+|..++.|+.++.|+.- ...  +...+.|.+ +|++|+||||.+.||||+.+++++|++.||+-+-+  ..
T Consensus       173 Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~~~~~~gdV-~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a--~~  249 (314)
T COG0462         173 GGVKRARALADRLGAPLAIIDKRRDSSPNVVEVMNLIGDV-EGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYA--AA  249 (314)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCC-CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE--EE
T ss_conf             3799999999980998799998725899747970343367-79879999365136568999999999779975999--99


Q ss_pred             ECCCCHH-HHHHHHHCCC
Q ss_conf             4176324-8999997798
Q gi|254781011|r  164 FYDIFPE-VPARFRENNI  180 (228)
Q Consensus       164 ~~~~~~~-~~~~l~~~gi  180 (228)
                      .+..|.+ +.+++++..+
T Consensus       250 tH~vfs~~a~~~l~~~~i  267 (314)
T COG0462         250 THGVFSGAALERLEASAI  267 (314)
T ss_pred             ECHHHCHHHHHHHHCCCC
T ss_conf             836607089999864887


No 37 
>PRK04554 consensus
Probab=99.06  E-value=3.1e-09  Score=81.06  Aligned_cols=154  Identities=18%  Similarity=0.305  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH
Q ss_conf             9999999986597682078986731187264014262--13579899999999999986642175666789982231257
Q gi|254781011|r   13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCR--KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIP   90 (228)
Q Consensus        13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r--~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip   90 (228)
                      ++.+|++|...|+=++   =.+-|-+....- |||..  .+...        ..+++.+... ...+ -+|++|..||..
T Consensus       113 ak~vA~lL~~~G~d~v---itvDlH~~qiqg-fF~ipvd~l~a~--------~~l~~~i~~~-~~~~-~vvVsPD~G~~~  178 (327)
T PRK04554        113 AKLVANMLYSAGIDRV---LTVDLHADQIQG-FFDIPVDNIYAT--------PILLNDIKQQ-RIEN-LTVVSPDIGGVV  178 (327)
T ss_pred             HHHHHHHHHHCCCCCC---EEECCCHHHHHC-CCCCCCCCCCCH--------HHHHHHHHHC-CCCC-CEEECCCCCHHH
T ss_conf             9999855762598850---476268488734-368970211121--------9999999860-7787-289837953899


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC
Q ss_conf             88999851587178763156420110--0133103733414408788732236999999998659878568888741763
Q gi|254781011|r   91 FATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIF  168 (228)
Q Consensus        91 ~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~  168 (228)
                      .|..+|..++.|+.+..|...+....  ..+.|.+ +|+.|+||||++.||||+.++++.|+++||.-+  .+...++.|
T Consensus       179 ra~~~A~~L~~~~a~~~K~R~~~~~~~~~~~vgdV-~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V--~~~aTHglf  255 (327)
T PRK04554        179 RARAVAKSLNADLAIIDKRRPKANVAEVMNIIGDI-QGRTCLIVDDMIDTANTLCKAAVALKERGAERV--LAYASHAVF  255 (327)
T ss_pred             HHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCC-CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEE--EEEEECCCC
T ss_conf             99999975688779999644899822651255641-222367204321350679999999997699878--999879160


Q ss_pred             H-HHHHHHHHCCCEEE
Q ss_conf             2-48999997798099
Q gi|254781011|r  169 P-EVPARFRENNIKLH  183 (228)
Q Consensus       169 ~-~~~~~l~~~gi~~~  183 (228)
                      . .+.+++.+.+++-.
T Consensus       256 s~~A~~rl~~s~i~~i  271 (327)
T PRK04554        256 SGEAVSRIASSEIDQV  271 (327)
T ss_pred             CCHHHHHHHHCCCCEE
T ss_conf             6339999971899789


No 38 
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.05  E-value=3.5e-09  Score=80.78  Aligned_cols=161  Identities=15%  Similarity=0.189  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH
Q ss_conf             99999999865976820789867311872640142621357989999999999998664217566678998223125788
Q gi|254781011|r   13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFA   92 (228)
Q Consensus        13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a   92 (228)
                      ++.+|++|-..|+=++-   -+-|-+.... -||+......+  .    ...+++.|.+.....+--+|++|..||.--|
T Consensus       111 ak~vA~lL~~~g~d~vi---tvDlH~~~i~-gfF~ipv~~l~--~----~~~~~~~i~~~~~~~~~~vvVsPD~G~~~ra  180 (321)
T PRK02269        111 SKLVANMLEVAGVDRLL---TVDLHAAQIQ-GFFDIPVDHLM--G----APLIADYFDRHGLVGEDVVVVSPDHGGVTRA  180 (321)
T ss_pred             HHHHHHHHHHCCCCEEE---EECCCCHHHH-HCCCCCCCCEE--E----CHHHHHHHHHHCCCCCCEEEECCCCHHHHHH
T ss_conf             99999988744877799---9626747776-32699841113--0----3899999998479876708971793199999


Q ss_pred             HHHHHHCCCCEEEEECCCCCCHH--H--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC
Q ss_conf             99985158717876315642011--0--0133103733414408788732236999999998659878568888741763
Q gi|254781011|r   93 TLLAERLNLPMIYVRKKSKKHGQ--K--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIF  168 (228)
Q Consensus        93 ~~iA~~l~~p~~~vRK~~K~hG~--~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~  168 (228)
                      ..+|..++.|+.+..|.......  .  ..+.|.+ +|+.|+||||++.||||+.++++.|+++||.-+-  ++..++.|
T Consensus       181 ~~~A~~l~~~~~~~~K~R~~~~~~~~~~~~~~gdV-~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~--~~~THgvf  257 (321)
T PRK02269        181 RKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGNV-SGKKCILIDDMIDTAGTICHAADALAEAGATAVY--ASCTHPVL  257 (321)
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCCC-CCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEE--EEEECCCC
T ss_conf             99998627878999987368988743420357740-6976999662431426699999999848998279--99978027


Q ss_pred             H-HHHHHHHHCCCEEEEEC
Q ss_conf             2-48999997798099963
Q gi|254781011|r  169 P-EVPARFRENNIKLHYLA  186 (228)
Q Consensus       169 ~-~~~~~l~~~gi~~~sl~  186 (228)
                      . ++.+++.+.+++-.-++
T Consensus       258 s~~A~~rl~~s~i~~ivvT  276 (321)
T PRK02269        258 SGPALDNIQKSAIEKLIVL  276 (321)
T ss_pred             CHHHHHHHHCCCCCEEEEE
T ss_conf             8479999860899889980


No 39 
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.99  E-value=6e-09  Score=79.21  Aligned_cols=102  Identities=14%  Similarity=0.310  Sum_probs=81.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             7899822312578899985158-71787631564201100--13310373341440878873223699999999865987
Q gi|254781011|r   79 DIIAGGETAGIPFATLLAERLN-LPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI  155 (228)
Q Consensus        79 d~I~G~a~~Gip~a~~iA~~l~-~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~  155 (228)
                      -+|++|..||...|..+|..++ .++.+..|...+.+...  .+.|.+ +|+.|+||||++.||||+.++++.|+++||.
T Consensus       168 ~vvVsPD~G~~~ra~~~A~~Lg~~~~~~~~K~R~~~~~~~~~~~~gdV-~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~  246 (319)
T PRK04923        168 LIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDV-QGKTCVLVDDLVDTAGTLCAAAAALKQRGAL  246 (319)
T ss_pred             CEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCCCC-CCCEEEEECCHHCCCHHHHHHHHHHHHCCCC
T ss_conf             189847942889999999870898679998544899821102444443-7966999664320651299999999875998


Q ss_pred             EEEEEEEEECCCCH-HHHHHHHHCCCEEE
Q ss_conf             85688887417632-48999997798099
Q gi|254781011|r  156 IQDGIGLFFYDIFP-EVPARFRENNIKLH  183 (228)
Q Consensus       156 V~~~~vii~~~~~~-~~~~~l~~~gi~~~  183 (228)
                      -+  .+...+..|. .+.+++.+.++.-.
T Consensus       247 ~V--~~~~THglfs~~A~~rl~~s~i~~i  273 (319)
T PRK04923        247 KV--VAYITHPVLSGPAVDNINNSQLDEL  273 (319)
T ss_pred             EE--EEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             68--9999797688679999970899889


No 40 
>PRK05038 consensus
Probab=98.99  E-value=9.3e-09  Score=77.99  Aligned_cols=104  Identities=16%  Similarity=0.324  Sum_probs=81.3

Q ss_pred             CEEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             7899822312578899985158-7178763156420110--013310373341440878873223699999999865987
Q gi|254781011|r   79 DIIAGGETAGIPFATLLAERLN-LPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI  155 (228)
Q Consensus        79 d~I~G~a~~Gip~a~~iA~~l~-~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~  155 (228)
                      .+|++|..||..-|..+|..++ .++.++.|+..+.+..  ..+.|.+ +|+.|+||||++.||||+.++++.|+++||.
T Consensus       164 ~vVVsPD~g~~~ra~~~A~~l~~~~~~~~~K~R~~~~~~~~~~~~gdV-~Gk~~iIVDDiIdTGgTl~~aa~~Lk~~GA~  242 (315)
T PRK05038        164 PIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDV-AGRDCILVDDMIDTGGTLCKAAEALKERGAK  242 (315)
T ss_pred             CEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             579815914999999999870898779998503788731440345643-4413799757222515899999999965998


Q ss_pred             EEEEEEEEECCCCHH-HHHHHHHCCCEEEEE
Q ss_conf             856888874176324-899999779809996
Q gi|254781011|r  156 IQDGIGLFFYDIFPE-VPARFRENNIKLHYL  185 (228)
Q Consensus       156 V~~~~vii~~~~~~~-~~~~l~~~gi~~~sl  185 (228)
                      -+  +++..++.|.+ +.+++.+.+++-.-.
T Consensus       243 ~V--~~~~THglfs~~A~~~l~~s~i~~ivv  271 (315)
T PRK05038        243 RV--FAYATHPVFSGNAAENIRNSVIDEVIV  271 (315)
T ss_pred             CC--EEEEECCCCCCHHHHHHHCCCCCEEEE
T ss_conf             63--599865355836999986089988999


No 41 
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.98  E-value=8.4e-09  Score=78.27  Aligned_cols=116  Identities=15%  Similarity=0.309  Sum_probs=86.4

Q ss_pred             HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCC-CH---HHHHHHHCCCCCCCEEEHHHHHHH
Q ss_conf             9999866421756667899822312578899985158-717876315642-01---100133103733414408788732
Q gi|254781011|r   64 LTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN-LPMIYVRKKSKK-HG---QKSQIEGHLFKGARVLVIEDLVTL  138 (228)
Q Consensus        64 ~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~-~p~~~vRK~~K~-hG---~~~~iEG~~~~g~~vliVDDviTt  138 (228)
                      .+++.+.++....+ -+|++|..||...|..+|..++ .|+.++.|+... .+   ....+.|. .+|+.|+||||++.|
T Consensus       136 ~l~~~i~~~~~~~~-~vvvsPD~Ga~~ra~~~a~~Lg~~~~~~~~K~R~~~~~~~v~~~~~~gd-V~Gr~viIVDDiI~T  213 (304)
T PRK03092        136 LLADYIRSNYDLDN-MTVVSPDAGRVRVAEKWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGD-VEGRTCVLVDDMIDT  213 (304)
T ss_pred             HHHHHHHHCCCCCC-CEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCC-CCCCEEEEECCHHHC
T ss_conf             99999985188766-1898069746899999999867997899970246787753761444567-678759997764543


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEEECCCCHH-HHHHHHHCCCEEE
Q ss_conf             23699999999865987856888874176324-8999997798099
Q gi|254781011|r  139 GNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE-VPARFRENNIKLH  183 (228)
Q Consensus       139 G~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~-~~~~l~~~gi~~~  183 (228)
                      |||+.++++.|+++||.-+  .++..++.|.+ +.+++.+.+++-.
T Consensus       214 GgTl~~aa~~Lk~~GA~~V--~~~~THglfs~~A~~rl~~s~i~~i  257 (304)
T PRK03092        214 GGTIAGAVEALKEAGAKDV--IIAATHGVLSDPAAERLKNCGAREV  257 (304)
T ss_pred             CHHHHHHHHHHHHCCCCEE--EEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             7359999999986699839--9999793459679999973899879


No 42 
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.98  E-value=8.3e-09  Score=78.31  Aligned_cols=113  Identities=15%  Similarity=0.232  Sum_probs=86.7

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHH--HHHHHHCCCCCCCEEEHHHHHHHHHHH
Q ss_conf             999866421756667899822312578899985158717876315642011--001331037334144087887322369
Q gi|254781011|r   65 TAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ--KSQIEGHLFKGARVLVIEDLVTLGNSM  142 (228)
Q Consensus        65 ~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~--~~~iEG~~~~g~~vliVDDviTtG~S~  142 (228)
                      +++.+..+.  .+ .+|++|..||...|..+|..++.|+.+..|+.-....  .....|. .+|+.|+||||++.||||+
T Consensus       145 ~~~~~~~~~--~~-~vVVsPD~G~~~ra~~~a~~Lg~~~~~~~K~R~~~~~v~~~~~~~d-V~Gr~~IIvDDiidTGgTl  220 (286)
T PRK00934        145 IAEYIKEKL--VD-PLVLAPDKGALERAKEVAEILGCEYDYLEKKRISPTEVEMKPKDLD-VKGKDVLIVDDIISTGGTM  220 (286)
T ss_pred             HHHHHHHHC--CC-CEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCC-CCCCEEEEECCHHHCHHHH
T ss_conf             589998438--88-7898479748999999999753646589974389985236235322-2587899965622153889


Q ss_pred             HHHHHHHHHCCCEEEEEEEEEECCCCHH-HHHHHHHCCCEEE
Q ss_conf             9999999865987856888874176324-8999997798099
Q gi|254781011|r  143 FEFVKVIRDSGGIIQDGIGLFFYDIFPE-VPARFRENNIKLH  183 (228)
Q Consensus       143 ~~~i~~l~~~g~~V~~~~vii~~~~~~~-~~~~l~~~gi~~~  183 (228)
                      .++++.|++.||.=+  .++..++.|.+ +.+++.+.++.-.
T Consensus       221 ~~aa~~Lk~~GA~~V--~~~~THglfs~~A~~rl~~s~i~~i  260 (286)
T PRK00934        221 AKAISILKEQGAKKI--YVSCVHPVLVEDAINKIHSAGADEL  260 (286)
T ss_pred             HHHHHHHHHCCCCEE--EEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             999999998699869--9999790078059999974899889


No 43 
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.98  E-value=9.4e-09  Score=77.96  Aligned_cols=102  Identities=13%  Similarity=0.229  Sum_probs=80.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH---HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             7899822312578899985158717876315642011001---3310373341440878873223699999999865987
Q gi|254781011|r   79 DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQ---IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI  155 (228)
Q Consensus        79 d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~---iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~  155 (228)
                      .+|++|..||...+..+|..++.|+.+.+|+..+...-..   ..|. .+|+.|+||||++.||||+.++++.|++.||.
T Consensus       162 ~vvVsPD~G~~~ra~~~a~~lg~~~~~~~K~R~~~~~v~i~~~~~~~-v~gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~  240 (301)
T PRK07199        162 PLLIGPDSESEQWVSAVAGRAGAPHAVLRKTRHGDRDVEISLPDLSA-WAGRTPVLVDDIVSTGRTLIEAARQLLAAGAA  240 (301)
T ss_pred             CEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEECCCCCC-CCCCCEEEECCHHHCHHHHHHHHHHHHHCCCC
T ss_conf             53678887779999999986599879999886589863374465545-58995478664221437799999999986998


Q ss_pred             EEEEEEEEECCCCHH-HHHHHHHCCCEEE
Q ss_conf             856888874176324-8999997798099
Q gi|254781011|r  156 IQDGIGLFFYDIFPE-VPARFRENNIKLH  183 (228)
Q Consensus       156 V~~~~vii~~~~~~~-~~~~l~~~gi~~~  183 (228)
                      -+  .+...++.|.+ +.+++.+.++.-.
T Consensus       241 ~V--~~~aTHgvfs~~A~~~i~~s~i~~i  267 (301)
T PRK07199        241 SP--VCVGVHALFAPDAYSALLAAGAARV  267 (301)
T ss_pred             EE--EEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             58--9999786478569999984899889


No 44 
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.97  E-value=1.4e-08  Score=76.90  Aligned_cols=156  Identities=15%  Similarity=0.244  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEE---EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH
Q ss_conf             9999999998659768207898673118726401---4262135798999999999999866421756667899822312
Q gi|254781011|r   12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLY---IDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAG   88 (228)
Q Consensus        12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y---~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~G   88 (228)
                      -++++|.+|-..||=++   =..-|-++..--+|   +..-.+.+.|-.        ++.+.+. +..+ .+|+.|..||
T Consensus       228 SAKlVAnLL~~aGaDRV---ITmDLHa~QIQGFFd~nIPVDnL~a~pll--------~~y~~~~-~l~n-~VVVSPD~Gg  294 (443)
T PTZ00145        228 SAADVARMIEAMGVDRV---VAIDLHSGQIQGFFGPRVPVDNLEAQLIG--------LDYFTKK-DLYK-PVIVSPDAGG  294 (443)
T ss_pred             EHHHHHHHHHHCCCCEE---EEEECCCHHHCCCCCCCCCCCCCCCCHHH--------HHHHHHC-CCCC-CEEECCCCCH
T ss_conf             59999999986398849---99706856762425899862136524767--------9999845-9988-8898389974


Q ss_pred             HHHHHHHHHHCC------CCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             578899985158------71787631564201100--1331037334144087887322369999999986598785688
Q gi|254781011|r   89 IPFATLLAERLN------LPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI  160 (228)
Q Consensus        89 ip~a~~iA~~l~------~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~  160 (228)
                      +--|..+|..|+      .++.++-|.....++..  .+.|.+ +|+.|+||||++.||||+..++++|++.||.-+  .
T Consensus       295 vkRAr~~A~~L~~~~i~d~~lAii~KrR~~~neve~m~iIGDV-kGK~~IIVDDmIDTgGTL~~AA~~Lke~GAk~V--y  371 (443)
T PTZ00145        295 VYRARKFQDGLNHRGIGDCGIAMLIKQRTKPNEIEKMDLVGNV-YDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRV--F  371 (443)
T ss_pred             HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECC-CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE--E
T ss_conf             9999999998554556788659999655999936653557502-798789967743455679999999996799879--9


Q ss_pred             EEEECCCCHH-HHHHHHHCCCEEE
Q ss_conf             8874176324-8999997798099
Q gi|254781011|r  161 GLFFYDIFPE-VPARFRENNIKLH  183 (228)
Q Consensus       161 vii~~~~~~~-~~~~l~~~gi~~~  183 (228)
                      +...++.|.+ |.+++++..++-.
T Consensus       372 A~aTHGVfSg~AierI~~S~I~ev  395 (443)
T PTZ00145        372 AFATHGLFSGPAIDRIEKSPLEEV  395 (443)
T ss_pred             EEEECCCCCHHHHHHHHCCCCCEE
T ss_conf             999773078548989754899789


No 45 
>PRK01132 consensus
Probab=98.95  E-value=6.9e-09  Score=78.84  Aligned_cols=109  Identities=17%  Similarity=0.319  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCH--HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             66789982231257889998515871787631564201--1001331037334144087887322369999999986598
Q gi|254781011|r   77 SIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHG--QKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGG  154 (228)
Q Consensus        77 ~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG--~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~  154 (228)
                      +.++|++|..||...|..+|..++.++.+..|+.-+..  .....+|.+ +|+.|+||||.+.||||+.++++.|+++||
T Consensus       153 ~~~vVVsPD~G~~~rA~~~A~~Lg~~~~~~~K~R~~~~~v~~~~~~~dV-~gk~~IIVDDiidTGgTl~~aa~~Lk~~GA  231 (286)
T PRK01132        153 DIDYVVSPDDGGLERVKSIAKYLGKKAFYIEKKRIDDRTVEMKMPDIDS-NGKKILIVDDIISTGGTIAKSSRILRDKGA  231 (286)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEECCCCCE-EEEEEEEEECHHHCHHHHHHHHHHHHHCCC
T ss_conf             8561257985288999999998199869997555699851351211214-641599981502123899999999998799


Q ss_pred             EEEEEEEEEECCCCHH-HHHHHHHCCCEEEEECCHHHH
Q ss_conf             7856888874176324-899999779809996329999
Q gi|254781011|r  155 IIQDGIGLFFYDIFPE-VPARFRENNIKLHYLATWNDI  191 (228)
Q Consensus       155 ~V~~~~vii~~~~~~~-~~~~l~~~gi~~~sl~t~~~i  191 (228)
                      +=+  .++..++.|.+ +.+++.+ ++.  .+..-+.|
T Consensus       232 ~~V--~a~~THglfs~~A~~ri~~-~~~--~iv~TdTi  264 (286)
T PRK01132        232 SKI--YVSAVHGLFVNNSEAKILE-NAD--EIHVTDTV  264 (286)
T ss_pred             CEE--EEEEECCCCCHHHHHHHHH-CCC--EEEECCCC
T ss_conf             849--9999682067169999880-699--89991897


No 46 
>PRK03675 consensus
Probab=98.92  E-value=2e-08  Score=75.89  Aligned_cols=110  Identities=17%  Similarity=0.312  Sum_probs=83.8

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHH--HHHHHHCCCCCCCEEEHHHHHHHHHHH
Q ss_conf             999866421756667899822312578899985158717876315642011--001331037334144087887322369
Q gi|254781011|r   65 TAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ--KSQIEGHLFKGARVLVIEDLVTLGNSM  142 (228)
Q Consensus        65 ~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~--~~~iEG~~~~g~~vliVDDviTtG~S~  142 (228)
                      +++.+..+..  + .+|++|..|+...|..+|..++.++.+..|+..++.+  ...+.|.+ +|+.|+||||++.||+|+
T Consensus       142 ~~~~~~~~~~--~-~vVVsPD~G~~~ra~~~A~~lg~~~~~~~K~R~~~~~v~~~~~~~dV-~Gk~vIIVDDiIdTGgTl  217 (279)
T PRK03675        142 IAEYFRDKLG--E-GLVLAPDKGALERAKAVAEVLGLEYSHFEKERISPTEVEMTPVDVDV-KGKNVLIVDDIISTGGTM  217 (279)
T ss_pred             HHHHHHHHCC--C-CEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCC-CCCEEEEECCCCCCHHHH
T ss_conf             8999985089--8-68997898889999999986178657887326789821652555554-796799974510252789


Q ss_pred             HHHHHHHHHCCCEEEEEEEEEECCCCH-HHHHHHHHCCCE
Q ss_conf             999999986598785688887417632-489999977980
Q gi|254781011|r  143 FEFVKVIRDSGGIIQDGIGLFFYDIFP-EVPARFRENNIK  181 (228)
Q Consensus       143 ~~~i~~l~~~g~~V~~~~vii~~~~~~-~~~~~l~~~gi~  181 (228)
                      .++++.|++.||.-+  .+...++.|. ++.+++.+. +.
T Consensus       218 ~~aa~~Lk~~GA~~V--~~~aTHglfs~~A~~~l~~~-i~  254 (279)
T PRK03675        218 IRAAEILRKLGAKKI--FVVATHGVFAEGAIERVSKA-VD  254 (279)
T ss_pred             HHHHHHHHHCCCCEE--EEEEECCCCCCHHHHHHHHH-CC
T ss_conf             999999997699869--99997810680699999974-88


No 47 
>PRK02270 consensus
Probab=98.89  E-value=7.9e-08  Score=71.92  Aligned_cols=150  Identities=18%  Similarity=0.267  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH
Q ss_conf             99999999865976820789867311872640142621--3579899999999999986642175666789982231257
Q gi|254781011|r   13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRK--LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIP   90 (228)
Q Consensus        13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~--~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip   90 (228)
                      ++.+|++|-..|+=+.-   -+-|-|.... -|||.-.  +...|        .+++.+....  .+ -+|++|..||..
T Consensus       111 aklvA~lL~~~G~d~vi---tvDlH~~qiq-gfF~iPvd~l~a~~--------~l~~~i~~~~--~~-~vvVsPD~G~~~  175 (327)
T PRK02270        111 AKLVADLLEKAGATKII---SVDLHNPSIQ-GFFDIPVDDIKGQY--------ILAKELKKKN--EK-FTVVSPDHGGAV  175 (327)
T ss_pred             HHHHHHHHHHCCCCEEE---EECCCHHHHH-CCCCCCCEEEECCH--------HHHHHHHHCC--CC-EEEEECCCCHHH
T ss_conf             99999988524786478---8435768885-04699730477427--------8799886406--87-189976974899


Q ss_pred             HHHHHHHHCC--CCEEEEECCCCCCHHHHH--HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC
Q ss_conf             8899985158--717876315642011001--331037334144087887322369999999986598785688887417
Q gi|254781011|r   91 FATLLAERLN--LPMIYVRKKSKKHGQKSQ--IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD  166 (228)
Q Consensus        91 ~a~~iA~~l~--~p~~~vRK~~K~hG~~~~--iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~  166 (228)
                      -|..+|..++  .++.++.|...+.++...  +.|.+ +|+.|+||||++.||||+.++++.|++.||+-+  .+...++
T Consensus       176 ra~~~a~~Lg~~~~~a~~~K~R~~~~~~e~~~~iGdV-~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V--~~~aTHg  252 (327)
T PRK02270        176 RARILAEIISDQIKIAIIDKRRTGANKSEVLGLIGDV-DGKNAVIIDDIIDTGGTIINAAEVLKEKGAKKI--VLAATHG  252 (327)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCE-EEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEE--EEEEECH
T ss_conf             9999999853897488850246787742352045631-201489976700054779999999998799879--9999774


Q ss_pred             CCHHHHH-HHHHCCC
Q ss_conf             6324899-9997798
Q gi|254781011|r  167 IFPEVPA-RFRENNI  180 (228)
Q Consensus       167 ~~~~~~~-~l~~~gi  180 (228)
                      .|.++.. ++.+.++
T Consensus       253 vfs~~a~~~~~~s~i  267 (327)
T PRK02270        253 LFSKGFEIFEENPNI  267 (327)
T ss_pred             HCCCHHHHHHHCCCC
T ss_conf             438049999658998


No 48 
>PRK11595 gluconate periplasmic binding protein; Provisional
Probab=98.88  E-value=1.7e-08  Score=76.24  Aligned_cols=111  Identities=19%  Similarity=0.259  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHH---CCCCCCCEEEEECCC-------HH----HHHHHHHHHCCCCE---EEEECCCC--CC
Q ss_conf             79899999999999986642---175666789982231-------25----78899985158717---87631564--20
Q gi|254781011|r   53 SFVRARSMIMDLTAKTVLRN---IGFESIDIIAGGETA-------GI----PFATLLAERLNLPM---IYVRKKSK--KH  113 (228)
Q Consensus        53 s~P~~~~~i~~~~~~~i~~~---~~~~~~d~I~G~a~~-------Gi----p~a~~iA~~l~~p~---~~vRK~~K--~h  113 (228)
                      .+++....++.+++..+...   .....+|+|+-+|+.       |.    -+|..+|..+++|+   +..|....  .+
T Consensus        85 ~~~~l~~~la~~l~~~~~~~~~~~~~~~~D~IvPVPlh~~R~~~RGfNQa~~lA~~la~~l~~p~~~~~L~R~r~t~~Q~  164 (227)
T PRK11595         85 RRSELASALARLLLLEVLHARRSTGLQLPDRIVSVPLWQRRHWRRGFNQSDLLCRPLAHWLGCDYDSETLTRTRATATQH  164 (227)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHEECCCCCCCC
T ss_conf             86789999999999999985003366787848723899899987378889999999999838996301323135876745


Q ss_pred             HHH-----HHHHHCC-----CCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             110-----0133103-----7334144087887322369999999986598785688887
Q gi|254781011|r  114 GQK-----SQIEGHL-----FKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus       114 G~~-----~~iEG~~-----~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii  163 (228)
                      |.+     ..+.|.|     .+|++|++||||+|||.|+.++.++|+++|+.-+.++++-
T Consensus       165 ~ls~~~R~~Nv~~aF~~~~~~~g~~vlLVDDV~TTGaTl~~~a~~L~~aGa~~V~v~~la  224 (227)
T PRK11595        165 FLSARLRKRNLKNAFRLELPVQGQHMVIVDDVVTTGSTVAEIAQLLLRNGAATVQVWCLC  224 (227)
T ss_pred             CCCHHHHHHHHHCCEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf             689999986542887845788969799962014639999999999998099879999999


No 49 
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.80  E-value=4e-07  Score=67.36  Aligned_cols=165  Identities=18%  Similarity=0.199  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC--CC---HH----------HHH
Q ss_conf             999999999999866421756667899822312578899985158717--87631564--20---11----------001
Q gi|254781011|r   56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK--KH---GQ----------KSQ  118 (228)
Q Consensus        56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K--~h---G~----------~~~  118 (228)
                      ..|..+...+++.+.+.....++|+|+|+|-.|+|.|...|..+++|+  .++|..-.  .|   +.          -+.
T Consensus       272 ~~R~~lG~~LA~~i~~~~~~~~~DvVi~VPdSg~~aA~gya~~sgipy~~gliKNrYvgRTFI~P~q~~R~~~vr~Kln~  351 (503)
T PRK09246        272 KARLRMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNA  351 (503)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHCCCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCEEC
T ss_conf             99999999999998865787668625007997188999999971996120121036557677698688999867652003


Q ss_pred             HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHH-----------HHCCC
Q ss_conf             331037334144087887322369999999986598785688887-------417632489999-----------97798
Q gi|254781011|r  119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARF-----------RENNI  180 (228)
Q Consensus       119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l-----------~~~gi  180 (228)
                      +. ...+|+||++|||-|--|+|+...|+.|+++||+-+.+.+--       .|+..-...+.|           +..|.
T Consensus       352 i~-~~i~gK~vvlVDDSIVRGtT~k~Iv~~Lr~aGAkeVh~riasPpi~~Pc~yGID~~~~~eLIA~~~~~eei~~~iga  430 (503)
T PRK09246        352 IR-AEFKGKNVLLVDDSIVRGTTSEQIVQMARDAGAKKVYFASAAPPVRYPNVYGIDMPTANELIAHGRTVEEIRQLIGA  430 (503)
T ss_pred             CH-HHCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCC
T ss_conf             64-31569769998455311641999999999759988999967998578776734789979996569999999988599


Q ss_pred             EEEEECCHHHHHHHHHHC------------------CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             099963299999999988------------------89998999999999972997788
Q gi|254781011|r  181 KLHYLATWNDILTIAEKL------------------KIFNHDVLEEVRCFLDNPMQWSK  221 (228)
Q Consensus       181 ~~~sl~t~~~il~~l~~~------------------~~I~~~~~~~I~~~l~dP~~W~~  221 (228)
                      .-..-+++++|.+..-..                  +.++++-++.+++-+++-.+..+
T Consensus       431 DsL~yls~e~l~~a~~~~~~~~~~~c~acftG~Ypt~~~~~~y~~~~e~~~~~~~~~~~  489 (503)
T PRK09246        431 DGLIYQDLEDLIEAVRDGNPDIKQFECSCFDGEYVTGDVDQEYLDRLEQLRNDDAKAKR  489 (503)
T ss_pred             CEEEEECHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf             75886559999999743488756723436678166999799999999987470545443


No 50 
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=98.77  E-value=1.4e-07  Score=70.24  Aligned_cols=116  Identities=20%  Similarity=0.240  Sum_probs=76.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC------CCEEEE-----ECCCCCCHHHHH
Q ss_conf             135798999999999999866421756667899822312578899985158------717876-----315642011001
Q gi|254781011|r   50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN------LPMIYV-----RKKSKKHGQKSQ  118 (228)
Q Consensus        50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~------~p~~~v-----RK~~K~hG~~~~  118 (228)
                      .+++ ++.....+.-++.+|.++....+-=+++|+..+|.++|.-++..+.      .|+.++     |-.-...|....
T Consensus         5 ~il~-~~~I~~~i~RlA~qI~E~~~~~~~lvlvGI~~~G~~lA~rL~~~L~~~~~~~~~~~~ldit~yRDD~~~~~~~~~   83 (176)
T PRK05205          5 EILD-AEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEELEGVDVPVGELDITLYRDDLTKKGLHPQ   83 (176)
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf             8569-999999999999999986799886799998788999999999998787689872468887887315233578875


Q ss_pred             HHH-C---CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEEEEECC
Q ss_conf             331-0---3733414408788732236999999998659-8785688887417
Q gi|254781011|r  119 IEG-H---LFKGARVLVIEDLVTLGNSMFEFVKVIRDSG-GIIQDGIGLFFYD  166 (228)
Q Consensus       119 iEG-~---~~~g~~vliVDDviTtG~S~~~~i~~l~~~g-~~V~~~~vii~~~  166 (228)
                      +.. .   -.+|+.|++||||+-||.|+..+++++-..| ..-+..+|++||+
T Consensus        84 ~~~~~i~~~~~gk~ViLVDDVL~TGrTlraal~~l~~~grP~~I~lavLVDR~  136 (176)
T PRK05205         84 VKPTDIPFDIEGKTVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG  136 (176)
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf             55545764447888999831022368999999988636988679999999089


No 51 
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.59  E-value=1.2e-06  Score=64.33  Aligned_cols=149  Identities=21%  Similarity=0.221  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC----CC--------H-------------
Q ss_conf             999999866421756667899822312578899985158717--87631564----20--------1-------------
Q gi|254781011|r   62 MDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK----KH--------G-------------  114 (228)
Q Consensus        62 ~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K----~h--------G-------------  114 (228)
                      ...+++.|....+ .+.-.+.|.+-||+|.|..+|..++.|+  +++||-.-    +.        |             
T Consensus        11 Gr~La~~l~~~~~-~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~~   89 (220)
T COG1926          11 GRKLAQELAALRD-LKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSLG   89 (220)
T ss_pred             HHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHCEEEECCCCCEECCHHHHHHCC
T ss_conf             9999999985333-798379974688716799999986997369999634899982230366526996751066666346


Q ss_pred             -HHHHHHH----------------------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHH
Q ss_conf             -1001331----------------------03733414408788732236999999998659878568888741763248
Q gi|254781011|r  115 -QKSQIEG----------------------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEV  171 (228)
Q Consensus       115 -~~~~iEG----------------------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~  171 (228)
                       ....+++                      .-.+|+.|+||||=+.||.|+..+++.+|..++.-.-++|=+  - -+.+
T Consensus        90 i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV--~-p~~a  166 (220)
T COG1926          90 IDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPV--A-PEDA  166 (220)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCC--C-CHHH
T ss_conf             899999999999999999999997288998788889899970772120779999999986288608998445--9-7899


Q ss_pred             HHHHHHCCCEEEEECC---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9999977980999632---999999999888999899999999997299
Q gi|254781011|r  172 PARFRENNIKLHYLAT---WNDILTIAEKLKIFNHDVLEEVRCFLDNPM  217 (228)
Q Consensus       172 ~~~l~~~gi~~~sl~t---~~~il~~l~~~~~I~~~~~~~I~~~l~dP~  217 (228)
                      ...|+...-.+.++.+   +.-+=++..+   +.+-.-+.+..+|..+.
T Consensus       167 ~~~l~s~~D~vvc~~~P~~F~AVg~~Y~d---F~q~sdeEV~~lL~~a~  212 (220)
T COG1926         167 AAELESEADEVVCLYMPAPFEAVGEFYRD---FRQVSDEEVRALLRRAN  212 (220)
T ss_pred             HHHHHHHCCEEEEECCCCCHHHHHHHHHH---HHHCCHHHHHHHHHHCC
T ss_conf             99998546759998278548999999977---76538999999998513


No 52 
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=98.58  E-value=2.3e-07  Score=68.95  Aligned_cols=106  Identities=25%  Similarity=0.350  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC-------HHHHHHHHHH----HCCCCEEEEECCC--CCCHH-----HH
Q ss_conf             99999999999986642175666789982231-------2578899985----1587178763156--42011-----00
Q gi|254781011|r   56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETA-------GIPFATLLAE----RLNLPMIYVRKKS--KKHGQ-----KS  117 (228)
Q Consensus        56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~-------Gip~a~~iA~----~l~~p~~~vRK~~--K~hG~-----~~  117 (228)
                      .....+++.+...+..  ....+|.|+-+|..       |.--+..+|.    .++.|....|...  -.+|.     ..
T Consensus        92 ~l~~~la~~l~~~~~~--~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~l~r~k~~~~q~~l~~~~rr~  169 (225)
T COG1040          92 DLAKLLARLLAKALDD--FLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKALERRR  169 (225)
T ss_pred             HHHHHHHHHHHHHHHH--CCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCHHHEECCCCCCCCCCCHHHHHH
T ss_conf             7899999999998651--13466759973698778874687899999999877647642110000673100455589998


Q ss_pred             HHHHCC------CCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             133103------7334144087887322369999999986598785688887
Q gi|254781011|r  118 QIEGHL------FKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus       118 ~iEG~~------~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii  163 (228)
                      .++|.+      ....+|++||||+|||.|+.++.+.|++.|+..+.++++.
T Consensus       170 nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~la  221 (225)
T COG1040         170 NLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLA  221 (225)
T ss_pred             HCCCCEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             4605631478767677289994006667999999999997599169999998


No 53 
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.58  E-value=1.9e-07  Score=69.49  Aligned_cols=137  Identities=16%  Similarity=0.215  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC------------CCH---HHH
Q ss_conf             8999999999999866421756667899822312578899985158717--87631564------------201---100
Q gi|254781011|r   55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK------------KHG---QKS  117 (228)
Q Consensus        55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K------------~hG---~~~  117 (228)
                      -..|..+.+.+++....     +.|+|+++|-.|+|.|...|..+++|+  -++|-.-.            ..|   +.+
T Consensus       266 y~~R~~mG~~La~e~~~-----eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLn  340 (470)
T COG0034         266 YEARKRMGEKLAEEIPV-----EADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLN  340 (470)
T ss_pred             HHHHHHHHHHHHHHCCC-----CCCEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCC
T ss_conf             99999999999875873-----3657983498876899999998399655552102324346668867887750303037


Q ss_pred             HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHHHH-----------CC
Q ss_conf             1331037334144087887322369999999986598785688887-------41763248999997-----------79
Q gi|254781011|r  118 QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARFRE-----------NN  179 (228)
Q Consensus       118 ~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l~~-----------~g  179 (228)
                      .+... .+|+||++|||-|-.|+|+...|+.+|++||+-+.+..--       .|+..-..++.|-.           .|
T Consensus       341 pvr~~-v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~eLIA~~~~~eeI~~~Ig  419 (470)
T COG0034         341 PVREV-VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAANRTVEEIRKAIG  419 (470)
T ss_pred             CHHHH-HCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHC
T ss_conf             01788-58976999726514576699999999971887889984289756778664578998999647898899998848


Q ss_pred             CEEEEECCHHHHHHHHHH
Q ss_conf             809996329999999998
Q gi|254781011|r  180 IKLHYLATWNDILTIAEK  197 (228)
Q Consensus       180 i~~~sl~t~~~il~~l~~  197 (228)
                      ..-..-++++.+.+....
T Consensus       420 aDSL~yLslegL~~aig~  437 (470)
T COG0034         420 ADSLAYLSLEGLIKAIGR  437 (470)
T ss_pred             CCCEEEECHHHHHHHHCC
T ss_conf             770464249999999679


No 54 
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.54  E-value=7.4e-07  Score=65.60  Aligned_cols=116  Identities=22%  Similarity=0.377  Sum_probs=79.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHC------CCCE-----EEEECCCCCCH-HHH
Q ss_conf             13579899999999999986642175666789982231257889998515------8717-----87631564201-100
Q gi|254781011|r   50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERL------NLPM-----IYVRKKSKKHG-QKS  117 (228)
Q Consensus        50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l------~~p~-----~~vRK~~K~hG-~~~  117 (228)
                      .+++.-+.++.++....+.|..+.+. +--+++|+.++|+|+|.-++.++      ++|+     .+-|-.-+.-+ ...
T Consensus         5 ~ild~~~i~RtitRia~eIiErnk~~-~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p   83 (179)
T COG2065           5 EILDEAAIRRTITRIAHEIIERNKGL-DNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRP   83 (179)
T ss_pred             EECCHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECHHHHCCCCCC
T ss_conf             70799999999999999999970799-85599967428789999999999887377887036876785141331576677


Q ss_pred             HHHHCC----CCCCCEEEHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEEEEECC
Q ss_conf             133103----733414408788732236999999998659-8785688887417
Q gi|254781011|r  118 QIEGHL----FKGARVLVIEDLVTLGNSMFEFVKVIRDSG-GIIQDGIGLFFYD  166 (228)
Q Consensus       118 ~iEG~~----~~g~~vliVDDviTtG~S~~~~i~~l~~~g-~~V~~~~vii~~~  166 (228)
                      ++.+..    ..|++|++||||+-||.|+..++++|.+.| ...+..+|++||+
T Consensus        84 ~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRG  137 (179)
T COG2065          84 QAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRG  137 (179)
T ss_pred             CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf             656764752446878999820111472499999999864985358999998388


No 55 
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.51  E-value=1.9e-06  Score=62.86  Aligned_cols=132  Identities=14%  Similarity=0.119  Sum_probs=92.6

Q ss_pred             ECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CCCCEEEEECCCHHHHHHHHHHHC---C
Q ss_conf             07898673118726401426213579899999999999986642175-----666789982231257889998515---8
Q gi|254781011|r   29 SPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGF-----ESIDIIAGGETAGIPFATLLAERL---N  100 (228)
Q Consensus        29 ~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~-----~~~d~I~G~a~~Gip~a~~iA~~l---~  100 (228)
                      .|.|| .+.+|+.|.=  +...++-.-+.-..-+..++..|.++...     .++=+++|+=-|+++|.+-+...+   +
T Consensus         7 ~~~~~-~~~~~~~~~p--~~~~vL~seeeI~~rV~elg~qIs~dY~~~~l~~~~pL~vigVLkGs~~F~aDL~R~i~~~~   83 (211)
T PTZ00271          7 SPSGP-VGDEGRRNYP--MSAHTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEG   83 (211)
T ss_pred             CCCCC-CCCCCCCCCC--CHHEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCC
T ss_conf             89887-6777876685--45306768999999999999999998703554678976999984570999999999712369


Q ss_pred             CCE--EEEECCCCCCHHHHHHHH---------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf             717--876315642011001331---------03733414408788732236999999998659878568888741
Q gi|254781011|r  101 LPM--IYVRKKSKKHGQKSQIEG---------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY  165 (228)
Q Consensus       101 ~p~--~~vRK~~K~hG~~~~iEG---------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~  165 (228)
                      +|+  -|++-  +.||.+..--|         .-.+|+.||||||++-||.|+....+.++..|+.-+.++++++.
T Consensus        84 ip~~iDFm~v--SSYg~gt~SsG~v~i~~dl~~~i~gk~VLIVEDIvDTG~TL~~l~~~l~~~~p~Svki~tLl~K  157 (211)
T PTZ00271         84 VPVKVEFICA--SSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDK  157 (211)
T ss_pred             CCEEEEEEEE--EECCCCCEECCEEEEEECCCCCCCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf             9838899996--2069997107528994458877689879999413212558999999998549983899997847


No 56 
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.50  E-value=3.1e-07  Score=68.07  Aligned_cols=98  Identities=16%  Similarity=0.336  Sum_probs=71.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHH------
Q ss_conf             21357989999999999998664217566678998223125788999851587-17876315642011001331------
Q gi|254781011|r   49 RKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNL-PMIYVRKKSKKHGQKSQIEG------  121 (228)
Q Consensus        49 r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~-p~~~vRK~~K~hG~~~~iEG------  121 (228)
                      +.+.|+-+. ...|..++++|.+..  -.+|+|++++-||+-.|-.+|..|++ |+..+-  .+-|+.....+|      
T Consensus         4 ~~~vSw~~I-~~~~~~lA~kI~~s~--~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~--v~~y~~~~~~~~~~~v~~   78 (192)
T COG2236           4 KLYVSWEEI-HRLCRALAEKIRASG--FKPDVIVAIARGGLIPARILSDFLGVKPLYSIK--VEHYDETAERDGEAKVKY   78 (192)
T ss_pred             EEEECHHHH-HHHHHHHHHHHHHCC--CCCCEEEEECCCCEEHHHHHHHHHCCCCEEEEE--EEEEHHHCCCCCCCEEEC
T ss_conf             299649999-999999999999749--877689998678602799999986887247999--888500112377633612


Q ss_pred             --CC--CCCCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf             --03--7334144087887322369999999986
Q gi|254781011|r  122 --HL--FKGARVLVIEDLVTLGNSMFEFVKVIRD  151 (228)
Q Consensus       122 --~~--~~g~~vliVDDviTtG~S~~~~i~~l~~  151 (228)
                        .+  ..|+|||||||+.-||.|+..+.+.|++
T Consensus        79 ~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~  112 (192)
T COG2236          79 PITIDPLSGKKVLIVDDIVDTGETLELALEELKK  112 (192)
T ss_pred             CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             7654655898589982333761769999999985


No 57 
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.37  E-value=1.8e-06  Score=63.09  Aligned_cols=135  Identities=16%  Similarity=0.167  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--CH--HHHHHH---------
Q ss_conf             999999999999866421756667899822312578899985158717--876315642--01--100133---------
Q gi|254781011|r   56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--HG--QKSQIE---------  120 (228)
Q Consensus        56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--hG--~~~~iE---------  120 (228)
                      +.|..+...+++.    .. .+.|+|+|+|-.|+|.|...|..+++|+  .++|..-.+  +=  +.+..+         
T Consensus       275 ~~R~~lG~~LA~e----~~-~~~DiVi~VPdSg~~aa~gya~~sgip~~~glikn~y~gRTFI~p~q~~R~~~v~~Kln~  349 (474)
T PRK06388        275 QARVRMGMRLAKE----SP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNP  349 (474)
T ss_pred             HHHHHHHHHHHHH----CC-CCCCEEEECCCCHHHHHHHHHHHCCCCCHHCEEECCCCCCCCCCCCHHHHHHCCCEEEEE
T ss_conf             9999999998634----79-888889957886199999999865994110056535447652388677787444266665


Q ss_pred             -HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHH-----------HHCCCE
Q ss_conf             -1037334144087887322369999999986598785688887-------417632489999-----------977980
Q gi|254781011|r  121 -GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARF-----------RENNIK  181 (228)
Q Consensus       121 -G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l-----------~~~gi~  181 (228)
                       ....+|+||++|||-|-.|+|+...++.||++||+-+.+.+--       .|+..-...+.|           +..|..
T Consensus       350 i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pC~yGID~p~~~eLiA~~~~~eei~~~igaD  429 (474)
T PRK06388        350 IREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHIIAPCYFGVDMKTKDQFIARGKTDEEINNEIGAD  429 (474)
T ss_pred             EEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCC
T ss_conf             02441798899981661656679999999997799889999789996788666237899799965799999999985998


Q ss_pred             EEEECCHHHHHHHH
Q ss_conf             99963299999999
Q gi|254781011|r  182 LHYLATWNDILTIA  195 (228)
Q Consensus       182 ~~sl~t~~~il~~l  195 (228)
                      -..-++++++.+.+
T Consensus       430 sL~yls~e~l~~a~  443 (474)
T PRK06388        430 SLAFLSIDGLKQAI  443 (474)
T ss_pred             EEEEECHHHHHHHH
T ss_conf             68932799999986


No 58 
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=98.32  E-value=1.7e-06  Score=63.21  Aligned_cols=136  Identities=15%  Similarity=0.171  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--CH--HHHH----HH----
Q ss_conf             8999999999999866421756667899822312578899985158717--876315642--01--1001----33----
Q gi|254781011|r   55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--HG--QKSQ----IE----  120 (228)
Q Consensus        55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--hG--~~~~----iE----  120 (228)
                      -+.|..+...+++..    . .+.|+|+|+|-.|+|.|...|..+++|+  .++|..-.+  +=  +.+.    +.    
T Consensus       258 y~~R~~~G~~La~~~----~-v~~D~Vi~VPdsg~~~a~gya~~~~ip~~~~likn~y~gRtFI~p~q~~R~~~v~~Kln  332 (445)
T PRK08525        258 YEVRKKMGEELAKKF----A-VKADFVVPVPDSGVSAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLN  332 (445)
T ss_pred             HHHHHHHHHHHHHHC----C-CCCCCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf             999999999986256----8-67881786589857889999998299455531222002630148854455653232300


Q ss_pred             --HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHHH-----------HCCC
Q ss_conf             --1037334144087887322369999999986598785688887-------4176324899999-----------7798
Q gi|254781011|r  121 --GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARFR-----------ENNI  180 (228)
Q Consensus       121 --G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l~-----------~~gi  180 (228)
                        ....+|++|++|||-|-.|+|+...++.|+++||+-+.+.+--       .|+..-...+.|-           ..|.
T Consensus       333 p~~~~i~gK~vvlvDDSIVRGtT~k~ii~~Lr~aGakeVh~~i~sPpi~~pC~yGiD~~~~~eLia~~~~~eei~~~iga  412 (445)
T PRK08525        333 PMRKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGASEIHMAIACPEIKFPCTYGIDTPTFEELISANKSVEEVRKYIGA  412 (445)
T ss_pred             EHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCC
T ss_conf             23452179869998176155778999999999779988999968999688866766789989997579999999988599


Q ss_pred             EEEEECCHHHHHHHH
Q ss_conf             099963299999999
Q gi|254781011|r  181 KLHYLATWNDILTIA  195 (228)
Q Consensus       181 ~~~sl~t~~~il~~l  195 (228)
                      .-..-++++++.+.+
T Consensus       413 dsL~yls~e~l~~ai  427 (445)
T PRK08525        413 DSLSFLSIEELTRSI  427 (445)
T ss_pred             CEEEEECHHHHHHHH
T ss_conf             869942799999984


No 59 
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.32  E-value=1.8e-06  Score=63.07  Aligned_cols=100  Identities=20%  Similarity=0.327  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--C----------H-HHH--H
Q ss_conf             999999999999866421756667899822312578899985158717--876315642--0----------1-100--1
Q gi|254781011|r   56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--H----------G-QKS--Q  118 (228)
Q Consensus        56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--h----------G-~~~--~  118 (228)
                      +.|..+...+++.    . ..+.|+|+|+|-.|+|.|...|..+++|+  .++|..-.+  |          + +.+  .
T Consensus       291 ~~R~~~G~~LA~e----~-~v~~DiVi~VPdSg~~aA~gya~~sgipy~~glikn~YvgRTFI~p~q~~R~~~vr~Kln~  365 (495)
T PRK07349        291 SYRQRLGQQLAKE----S-PVDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQAMRESGIRMKLNP  365 (495)
T ss_pred             HHHHHHHHHHHCC----C-CCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEE
T ss_conf             9999999987260----6-8888638978996299999999973997122012045446555187588876320132013


Q ss_pred             HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             3310373341440878873223699999999865987856888
Q gi|254781011|r  119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG  161 (228)
Q Consensus       119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v  161 (228)
                      +. ...+|+||++|||-|-.|+|+...|+.||++||+-+.+.+
T Consensus       366 ~~-~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri  407 (495)
T PRK07349        366 LK-DVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRI  407 (495)
T ss_pred             CH-HHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             67-8858985999826605574699999999976998899996


No 60 
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.32  E-value=1.7e-06  Score=63.30  Aligned_cols=96  Identities=20%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEE-EEECCCCCCHHH---HHHHHCCCCCC
Q ss_conf             57989999999999998664217566678998223125788999851587178-763156420110---01331037334
Q gi|254781011|r   52 ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI-YVRKKSKKHGQK---SQIEGHLFKGA  127 (228)
Q Consensus        52 ~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~-~vRK~~K~hG~~---~~iEG~~~~g~  127 (228)
                      +|+-+ ....+..++++|.+..   .+|.|+|++-||...|..+|+.|+++.+ .+.-+.-++...   +.+-..-..|+
T Consensus        10 iSW~e-i~~~~~~LA~kI~~~~---~~d~IV~IaRGGliPA~~ls~~L~i~~i~~i~v~~Y~~~~~~~~~v~~~~~~~gk   85 (156)
T PRK09177         10 VSWDQ-LHRDARALAWRLLPAG---QWKGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLKAAEGDGE   85 (156)
T ss_pred             EEHHH-HHHHHHHHHHHHHHCC---CCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEECCCCCCCC
T ss_conf             54999-9999999999998508---9866999914783159999998598405799999615665565425416777786


Q ss_pred             CEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf             144087887322369999999986
Q gi|254781011|r  128 RVLVIEDLVTLGNSMFEFVKVIRD  151 (228)
Q Consensus       128 ~vliVDDviTtG~S~~~~i~~l~~  151 (228)
                      |||||||+.-||.|+..+.+.+.+
T Consensus        86 kVLIVDDI~DTG~Tl~~vk~~~~~  109 (156)
T PRK09177         86 GFLVVDDLVDTGGTARAVREMYPK  109 (156)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             289995343663789999986788


No 61 
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.31  E-value=2.9e-06  Score=61.77  Aligned_cols=135  Identities=18%  Similarity=0.210  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--C----------H---HHH
Q ss_conf             8999999999999866421756667899822312578899985158717--876315642--0----------1---100
Q gi|254781011|r   55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--H----------G---QKS  117 (228)
Q Consensus        55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--h----------G---~~~  117 (228)
                      -+.|..+...+++..    . .+.|+|+|+|-.|+|.|...|..+++|+  .++|..-.+  |          +   +-+
T Consensus       266 y~~R~~~G~~LA~e~----~-~~~DvVi~VPdSg~~aA~gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln  340 (471)
T PRK06781        266 HAARKNMGKRLAAEA----P-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLS  340 (471)
T ss_pred             HHHHHHHHHHHHHHC----C-CCCCEEEECCCCCHHHHHHHHHHHCCCHHHCEEECCCCCCCCCCCCHHHHHHHHHHCCE
T ss_conf             999999999986217----9-88898997898738899999998099744430100201443538758899876530110


Q ss_pred             HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHHH-----------HCC
Q ss_conf             1331037334144087887322369999999986598785688887-------4176324899999-----------779
Q gi|254781011|r  118 QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARFR-----------ENN  179 (228)
Q Consensus       118 ~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l~-----------~~g  179 (228)
                      .+. ...+|++|++|||-|--|+|+...++.|+++||+-+.+.+--       .|+..-...+.|-           ..|
T Consensus       341 ~~~-~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~Pc~yGID~p~~~eLIA~~~~~eei~~~ig  419 (471)
T PRK06781        341 AVR-GVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLKYPCFYGIDIQTRKELIAANHTVEEIREMIG  419 (471)
T ss_pred             ECC-CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHC
T ss_conf             410-0048988999816605575699999999977998899996899857876665478997998627999999998859


Q ss_pred             CEEEEECCHHHHHHHH
Q ss_conf             8099963299999999
Q gi|254781011|r  180 IKLHYLATWNDILTIA  195 (228)
Q Consensus       180 i~~~sl~t~~~il~~l  195 (228)
                      ..-..-++++++.+..
T Consensus       420 aDsL~yls~e~l~~ai  435 (471)
T PRK06781        420 ADSLTFLSEDGLVDAI  435 (471)
T ss_pred             CCEEEEECHHHHHHHH
T ss_conf             9869830799999985


No 62 
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=98.31  E-value=1.8e-06  Score=63.14  Aligned_cols=135  Identities=19%  Similarity=0.225  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC--CC----------H-HHH--
Q ss_conf             8999999999999866421756667899822312578899985158717--87631564--20----------1-100--
Q gi|254781011|r   55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK--KH----------G-QKS--  117 (228)
Q Consensus        55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K--~h----------G-~~~--  117 (228)
                      -+.|..+...+++.    .. .+.|+|+++|-.|+|.|...|..+++|+  .++|..-.  .+          + +.+  
T Consensus       268 y~~R~~~G~~LA~e----~~-~~~DvVi~VPdSg~~aA~Gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln  342 (484)
T PRK07272        268 HTARKRMGKRLAQE----FP-VDADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLS  342 (484)
T ss_pred             HHHHHHHHHHHHHH----CC-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             99999999999835----78-77872500788538999999987299511051450311345789967888873634010


Q ss_pred             HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHH----------H-HCC
Q ss_conf             1331037334144087887322369999999986598785688887-------417632489999----------9-779
Q gi|254781011|r  118 QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARF----------R-ENN  179 (228)
Q Consensus       118 ~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l----------~-~~g  179 (228)
                      .+. ...+|+||++|||-|-.|+|+...++.|+++||+-+.+.+--       .|+..-...+.|          . ..|
T Consensus       343 ~~~-~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~rissPpi~~pc~yGID~~t~~eLIA~~~~~eei~~~ig  421 (484)
T PRK07272        343 AVS-GVVKGKRVVMVDDSIVRGTTSRRIVKLLKEAGAKEVHVRIASPELKYPCFYGIDIQTRAELISANHSVEEICDIIG  421 (484)
T ss_pred             CCH-HHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHC
T ss_conf             254-5537975999825411267599999999977998899996899857875565689998999618999999998859


Q ss_pred             CEEEEECCHHHHHHHH
Q ss_conf             8099963299999999
Q gi|254781011|r  180 IKLHYLATWNDILTIA  195 (228)
Q Consensus       180 i~~~sl~t~~~il~~l  195 (228)
                      ..-..-+++++|.+..
T Consensus       422 adsL~ylsle~l~~ai  437 (484)
T PRK07272        422 ADSLTYLSVDGLIESI  437 (484)
T ss_pred             CCEEEEECHHHHHHHH
T ss_conf             9758843699999985


No 63 
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.29  E-value=2.3e-06  Score=62.35  Aligned_cols=134  Identities=18%  Similarity=0.228  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--C----------H-HHH--H
Q ss_conf             999999999999866421756667899822312578899985158717--876315642--0----------1-100--1
Q gi|254781011|r   56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--H----------G-QKS--Q  118 (228)
Q Consensus        56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--h----------G-~~~--~  118 (228)
                      +.|..+...+++.    . ..+.|+|+|+|-.|+|.|...|...++|+  .++|..-.+  |          + +.+  .
T Consensus       267 ~~R~~~G~~LA~e----~-~~~~DvVi~VPDSg~~aA~gya~~sgip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~  341 (475)
T PRK07631        267 TARKNLGKQLAEE----A-PVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSA  341 (475)
T ss_pred             HHHHHHHHHHHHH----C-CCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHCCCEECCCCCCCCHHHHHHHHHCCEEE
T ss_conf             9999999999832----7-9878889978996388999999872995454110013014657797588998744201424


Q ss_pred             HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHH-----------HHCCC
Q ss_conf             331037334144087887322369999999986598785688887-------417632489999-----------97798
Q gi|254781011|r  119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARF-----------RENNI  180 (228)
Q Consensus       119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l-----------~~~gi  180 (228)
                      +. ...+|+||++|||-|-.|+|+...++.|+++||+-+.+.+--       .|+..-...+.|           +..|.
T Consensus       342 ~~-~~v~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pc~yGID~~~~~eLIA~~~~~eei~~~iga  420 (475)
T PRK07631        342 VR-GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPIAHPCFYGIDTSTHEELIASSHSVEEIRQEIGA  420 (475)
T ss_pred             CC-CCCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCC
T ss_conf             42-00389737997443510641999999999769988999968998578766643789978986479999999998599


Q ss_pred             EEEEECCHHHHHHHH
Q ss_conf             099963299999999
Q gi|254781011|r  181 KLHYLATWNDILTIA  195 (228)
Q Consensus       181 ~~~sl~t~~~il~~l  195 (228)
                      .-..-++++++.+..
T Consensus       421 dsL~yls~e~l~~ai  435 (475)
T PRK07631        421 DSLAFLSVEGLLKGI  435 (475)
T ss_pred             CEEEEECHHHHHHHH
T ss_conf             868831699999985


No 64 
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.29  E-value=1.1e-05  Score=57.99  Aligned_cols=111  Identities=20%  Similarity=0.294  Sum_probs=81.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCCCHHH---HHHH-----
Q ss_conf             35798999999999999866421756667899822312578899985158717--8763156420110---0133-----
Q gi|254781011|r   51 LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKKHGQK---SQIE-----  120 (228)
Q Consensus        51 ~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~hG~~---~~iE-----  120 (228)
                      +++.-+....| ..++..|.++....++ +++++-.||++|++-+..+++.|.  -|++-  +.|+-.   +.++     
T Consensus        16 lis~eeI~~rI-~~lA~~I~~~y~~~~~-viI~vL~Ga~~F~adL~r~l~~~~~vdfi~~--sSY~~~~ssg~v~~~~~~   91 (181)
T PRK09162         16 LVSAAEVEAAI-DRMADEITADLADENP-LVLCVMNGGLVFTGQLLPRLDFPLEFDYLHA--TRYRNETTGGELVWKVKP   91 (181)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHCCCCEEEEEEEE--ECCCCCCCCCCEEEEECC
T ss_conf             26799999999-9999999998289984-8999957849999999985799837777786--124897757847997357


Q ss_pred             HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf             103733414408788732236999999998659878568888741
Q gi|254781011|r  121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY  165 (228)
Q Consensus       121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~  165 (228)
                      ..-.+|+.|+||||++-||.|+....+.++..|+.-+-++++++.
T Consensus        92 ~~~i~gk~VLiVeDIvDTG~Tl~~l~~~l~~~gp~Svki~~LldK  136 (181)
T PRK09162         92 RESLKGRTVLVVDDILDEGHTLAAIRDWCLEMGAAEVYSAVLVDK  136 (181)
T ss_pred             CCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf             756689869999318762799999999997049988999999965


No 65 
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.29  E-value=3.3e-06  Score=61.34  Aligned_cols=135  Identities=20%  Similarity=0.261  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--CH--HHH-----------H
Q ss_conf             999999999999866421756667899822312578899985158717--876315642--01--100-----------1
Q gi|254781011|r   56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--HG--QKS-----------Q  118 (228)
Q Consensus        56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--hG--~~~-----------~  118 (228)
                      +.|..+...+++..    . .+.|+|+|+|-.|+|.|...|...++|+  .++|..-.+  +=  +.+           .
T Consensus       261 ~~R~~~G~~LA~e~----~-~~~D~Vi~VPdSg~~aA~gyA~~sgip~~~gliKn~yvgRTFI~p~q~~R~~~v~~Kln~  335 (489)
T PRK07847        261 AARVEIGRRLAREH----P-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNP  335 (489)
T ss_pred             HHHHHHHHHHHHHC----C-CCCCEEEECCCCHHHHHHHHHHHCCCCHHHCEEECCCCCCCEECCCHHHHHHCCCEEEEC
T ss_conf             99999999987437----8-889979856997199999999973995444200146147401378665666365147740


Q ss_pred             HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHH-----------HHCCC
Q ss_conf             331037334144087887322369999999986598785688887-------417632489999-----------97798
Q gi|254781011|r  119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARF-----------RENNI  180 (228)
Q Consensus       119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l-----------~~~gi  180 (228)
                      + ..+.+|++|++|||-|-.|+|+...++.|+++|++-+.+.+--       .|+..-...+.|           +..|.
T Consensus       336 i-~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi~~PC~YGID~pt~~ELIA~~~s~eeI~~~iga  414 (489)
T PRK07847        336 L-REVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIASPPVKWPCFYGIDFATPAELIANGVTVEAVRRSIGA  414 (489)
T ss_pred             C-HHEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCC
T ss_conf             2-641779879998478356677999999999769988999968998578876744789989996389999999998699


Q ss_pred             EEEEECCHHHHHHHHH
Q ss_conf             0999632999999999
Q gi|254781011|r  181 KLHYLATWNDILTIAE  196 (228)
Q Consensus       181 ~~~sl~t~~~il~~l~  196 (228)
                      .-..-+++++|.+..-
T Consensus       415 DSL~ylsle~L~~aig  430 (489)
T PRK07847        415 DSLGYISLDGMIAATE  430 (489)
T ss_pred             CEEEEECHHHHHHHHC
T ss_conf             8688316999999867


No 66 
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=98.28  E-value=4.4e-06  Score=60.52  Aligned_cols=100  Identities=20%  Similarity=0.282  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--C----------H---HHHH
Q ss_conf             999999999999866421756667899822312578899985158717--876315642--0----------1---1001
Q gi|254781011|r   56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--H----------G---QKSQ  118 (228)
Q Consensus        56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--h----------G---~~~~  118 (228)
                      +.|..+...+++.   .  ..+.|+|+++|-.|+|.|...|..+++|+  .++|..-.+  +          +   +-+.
T Consensus       270 ~~R~~~G~~LA~e---~--~~~~DiVi~VPdSg~~aA~gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~  344 (480)
T PRK09123        270 EVRKNIGRELARE---S--PVDADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNA  344 (480)
T ss_pred             HHHHHHHHHHHHH---C--CCCCCEEEECCCCCHHHHHHHHHHCCCCHHHCEEECCCCCCCCCCCCHHHHHHCCEEEEEE
T ss_conf             9999999999600---7--9875527756676446789888763996112253124215774388787776370775640


Q ss_pred             HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             3310373341440878873223699999999865987856888
Q gi|254781011|r  119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG  161 (228)
Q Consensus       119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v  161 (228)
                      + ....+|++|++|||-|--|+|+...|+.|+++||+-+.+.+
T Consensus       345 ~-~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri  386 (480)
T PRK09123        345 N-RAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI  386 (480)
T ss_pred             C-CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             3-33458982999806615367699999999977998899996


No 67 
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=98.27  E-value=2.5e-06  Score=62.19  Aligned_cols=101  Identities=21%  Similarity=0.209  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEE--EEECCCCC--C----------HH-HHH-H
Q ss_conf             9999999999998664217566678998223125788999851587178--76315642--0----------11-001-3
Q gi|254781011|r   56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI--YVRKKSKK--H----------GQ-KSQ-I  119 (228)
Q Consensus        56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~--~vRK~~K~--h----------G~-~~~-i  119 (228)
                      +.|..+...+++.    .. .+.|+|+|+|-.|+|.|...|...++|+.  ++|..-.+  +          +- .++ .
T Consensus       275 ~~R~~lG~~LA~e----~~-~~~DvV~~VPdSg~~aA~gya~~sgip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~  349 (472)
T PRK05793        275 ESRVRAGEQLYKE----YP-VDADIVIGVPDSGIPAAIGYAKASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNP  349 (472)
T ss_pred             HHHHHHHHHHHHH----CC-CCCCEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEE
T ss_conf             9999999998735----78-888879817997599999999861994344012205215557688677897514623232


Q ss_pred             HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             310373341440878873223699999999865987856888
Q gi|254781011|r  120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG  161 (228)
Q Consensus       120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v  161 (228)
                      -....+|+||++|||-|-.|+|+...++.|+++|++-+.+.+
T Consensus       350 ~~~~v~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGakeVh~ri  391 (472)
T PRK05793        350 LKVNVEGKRVVLIDDSIVRGTTSKRLVESLRRAGAKEVHFRV  391 (472)
T ss_pred             EEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             021006986999807705576799999999977999899996


No 68 
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=98.27  E-value=3.1e-06  Score=61.53  Aligned_cols=102  Identities=19%  Similarity=0.225  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCCC-----HHHHH-H------H
Q ss_conf             8999999999999866421756667899822312578899985158717--8763156420-----11001-3------3
Q gi|254781011|r   55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKKH-----GQKSQ-I------E  120 (228)
Q Consensus        55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~h-----G~~~~-i------E  120 (228)
                      -+.|..+...+++.    .. .+.|+|+|+|-.|+|.|...|...++|+  .++|..-.+-     ....+ +      -
T Consensus       254 y~~R~~~G~~LA~e----~~-~~~DvVi~VPdSg~~aa~Gya~~~gip~~~glikn~y~gRtFI~P~qR~~~v~~Kl~~~  328 (442)
T PRK08341        254 YHARYRMGVELARE----SP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPV  328 (442)
T ss_pred             HHHHHHHHHHHHHH----CC-CCCCEEEECCCCHHHHHHHHHHHCCCCHHHHEEECCCCCCCCCCCCCHHHCEEEEEEEE
T ss_conf             99999999998612----89-87898996289749999999986299524300000121554438873002104465010


Q ss_pred             HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             10373341440878873223699999999865987856888
Q gi|254781011|r  121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG  161 (228)
Q Consensus       121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v  161 (228)
                      -...+|++|++|||-|--|+|+...++.|+++||+-+.+.+
T Consensus       329 ~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri  369 (442)
T PRK08341        329 REVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRI  369 (442)
T ss_pred             EEEECCCCEEEEECCEEECCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             00127981499614341054299999999976998899996


No 69 
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.15  E-value=2.8e-05  Score=55.32  Aligned_cols=114  Identities=19%  Similarity=0.255  Sum_probs=82.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH--------
Q ss_conf             135798999999999999866421756667899822312578899985158717876315642011001331--------
Q gi|254781011|r   50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEG--------  121 (228)
Q Consensus        50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG--------  121 (228)
                      .+++..+....+ ..+++.|.++... +.-.++|+=-|++||.+-+...++.|.-+-=-....||.+..=-|        
T Consensus        10 vLisee~I~~ri-~ela~~I~~~y~g-~~~~vv~iLkGs~~F~~dL~~~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDl   87 (178)
T COG0634          10 VLISEEQIKARI-KELAAQITEDYGG-KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDL   87 (178)
T ss_pred             EEECHHHHHHHH-HHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCEEEECCC
T ss_conf             742899999999-9999999776279-96199997466453099999855998416789974047876347716885356


Q ss_pred             -CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf             -03733414408788732236999999998659878568888741
Q gi|254781011|r  122 -HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY  165 (228)
Q Consensus       122 -~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~  165 (228)
                       .-.+|+.||||||++-||.|+....+.+...|++-..++++++.
T Consensus        88 d~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK  132 (178)
T COG0634          88 DEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDK  132 (178)
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf             667789849998521036755999999997569976899998607


No 70 
>KOG1448 consensus
Probab=98.13  E-value=1.9e-05  Score=56.48  Aligned_cols=152  Identities=20%  Similarity=0.267  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCEEEECCCC---CCEEEECCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
Q ss_conf             9999999999865976820789867311872---6401426213--5798999999999999866421756667899822
Q gi|254781011|r   11 IIAELVAKMLFEIKAVNFSPENPYHLTSGIV---SPLYIDCRKL--ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGE   85 (228)
Q Consensus        11 ~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~---Sp~Y~d~r~~--~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a   85 (228)
                      .+++++|.+|-..||=.       ..+++.|   ...|||-...  ..-|..++.        |+.+....+--+|+.|-
T Consensus       107 i~aklVanlls~aG~dh-------vIt~DlHa~Q~qgfF~ipVdnly~~p~~l~~--------ir~~~~~~~~~vivSPd  171 (316)
T KOG1448         107 ILAKLVANLLSSAGADH-------VITMDLHASQIQGFFDIPVDNLYAEPAVLNY--------IRENIPDSENAVIVSPD  171 (316)
T ss_pred             HHHHHHHHHHHCCCCCE-------EEEECCCCHHHCCEEECCCHHHCCCHHHHHH--------HHHHCCCCCCEEEECCC
T ss_conf             89999985020058965-------9982465342075240202110256388899--------98618874531898788


Q ss_pred             CCHHHHHHHHHHHCCCCEEEEECC-CCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             312578899985158717876315-6420110--0133103733414408788732236999999998659878568888
Q gi|254781011|r   86 TAGIPFATLLAERLNLPMIYVRKK-SKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL  162 (228)
Q Consensus        86 ~~Gip~a~~iA~~l~~p~~~vRK~-~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vi  162 (228)
                      .||.-=++.+|.++++-++.+-|+ .|.|+-.  -.++|.+ +|+-+++|||++-|+||+.++.+.|.++|+.-+  .++
T Consensus       172 aGgaKR~~s~ad~l~~~fali~ker~k~~~v~~~m~LVGDv-~gkvaIlVDDm~dt~GTl~~aa~~L~~~GA~kV--~a~  248 (316)
T KOG1448         172 AGGAKRVTSLADRLNLDFALIHKERRKANEVDIRMVLVGDV-KGKVAILVDDMADTCGTLIKAADKLLEHGAKKV--YAI  248 (316)
T ss_pred             CCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEECC-CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEE--EEE
T ss_conf             64556667777752115553301420045542589998536-786899943641136419999999986587459--999


Q ss_pred             EECCCCHH-HHHHHHHCCC
Q ss_conf             74176324-8999997798
Q gi|254781011|r  163 FFYDIFPE-VPARFRENNI  180 (228)
Q Consensus       163 i~~~~~~~-~~~~l~~~gi  180 (228)
                      +.++.|.+ +-+++.+..+
T Consensus       249 ~THgVfs~~a~er~~~s~~  267 (316)
T KOG1448         249 VTHGVFSGPAIERLNESAL  267 (316)
T ss_pred             ECCEECCCCHHHHHHHCCC
T ss_conf             7132226318877344043


No 71 
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase; InterPro: IPR005904    Phosphoribosyltransferases (PRT) are enzymes that catalyze the synthesis of beta-n-5'-monophosphates from phosphoribosylpyrophosphate (PRPP) and an enzyme specific amine. A number of PRT's are involved in the biosynthesis of purine, pyrimidine, and pyridine nucleotides, or in the salvage of purines and pyrimidines. Purine nucleotides are synthesized both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply.    This entry presents hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC), which belongs to phosphoribosyltransferase family and is involved in purine salvage.; GO: 0004422 hypoxanthine phosphoribosyltransferase activity, 0006166 purine ribonucleoside salvage, 0005737 cytoplasm.
Probab=98.02  E-value=3.8e-05  Score=54.43  Aligned_cols=110  Identities=18%  Similarity=0.278  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCC-----EEEEECCCHHHHHHHHHHHCC----------CCE--EEEECCCCCCH
Q ss_conf             5798999999999999866421756667-----899822312578899985158----------717--87631564201
Q gi|254781011|r   52 ISFVRARSMIMDLTAKTVLRNIGFESID-----IIAGGETAGIPFATLLAERLN----------LPM--IYVRKKSKKHG  114 (228)
Q Consensus        52 ~s~P~~~~~i~~~~~~~i~~~~~~~~~d-----~I~G~a~~Gip~a~~iA~~l~----------~p~--~~vRK~~K~hG  114 (228)
                      ++.-.....+ ..++..|.+.+...++|     .++|+=-|+++|-|=++..+.          .|+  =|++  .+.||
T Consensus         3 i~~~~i~~r~-~eLa~~I~~~Y~~~~~tt~~~l~~~gvLKGs~~F~aDL~~~i~~~~~~S~RS~~~~~~dFm~--vSSYg   79 (183)
T TIGR01203         3 ISEEQIKARI-AELAKQITEDYQGKKPTTDEELVLVGVLKGSFPFFADLIRAIDKLNKYSDRSVVPVQVDFMA--VSSYG   79 (183)
T ss_pred             CCHHHHHHHH-HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--EEECC
T ss_conf             6789999999-99999999873567899897389999725624459999999887422068730114888898--87507


Q ss_pred             HHHHHHH----------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf             1001331----------0373341440878873223699999999865987856888874
Q gi|254781011|r  115 QKSQIEG----------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF  164 (228)
Q Consensus       115 ~~~~iEG----------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~  164 (228)
                      ++.+=-|          .+..|+.||||||++-||-|+....+.|+.-+++..-++++++
T Consensus        80 ~~~~s~g~vki~kDld~di~~gk~VLiVEDIvDtG~Tl~~~~~~L~~r~Pksl~i~~LL~  139 (183)
T TIGR01203        80 NGMSSSGDVKILKDLDEDIKRGKDVLIVEDIVDTGLTLSYLLELLKARKPKSLKIVTLLD  139 (183)
T ss_pred             CCCEEECCEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf             983031113798527898403781899961534246799999987138993689999865


No 72 
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase; InterPro: IPR005946    Synonyms: phosphoribosylpyrophosphate synthetase     Phosphoribosyldiphosphate synthetase (PRPPsase, 2.7.6.1 from EC) catalyzes the transfer of an intact diphosphate (PP) group from ATP to ribose-5-phosphate (R-5-P), which results in the formation of AMP and 5-phospho-D-ribosyl--1-diphosphate (PRPP).  ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate  PRPP is an essential precursor for purine and pyrimidine nucleotides, both in the de novo synthesis and in the salvage pathway as well as in the synthesis of pyridine nucleotide coenzymes. The activity of PRPPsase is highly regulated. Besides competitive inhibition at the substrate binding sites, most PRPPsases are regulated in an allosteric manner, in which ADP generally acts as the most potent inhibitor. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions.; GO: 0000287 magnesium ion binding, 0004749 ribose phosphate diphosphokinase activity, 0009165 nucleotide biosynthetic process.
Probab=97.78  E-value=0.00054  Score=46.95  Aligned_cols=154  Identities=17%  Similarity=0.312  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEE--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf             89999999999865976820789867311872640142--6213579899999999999986642175666789982231
Q gi|254781011|r   10 NIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYID--CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETA   87 (228)
Q Consensus        10 ~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d--~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~   87 (228)
                      ..-++.+++++-..|+-+.   -...+-+..... ||+  ...+...|    .+.+.    +..... ..-.+++.|..|
T Consensus       104 ~~~~~~~~~~~~~~g~~~~---~~~~~h~~~~~~-~f~~p~~~~~~~~----~~~~~----~~~~~~-~~~~~~~~pd~g  170 (316)
T TIGR01251       104 PISAKLVADLLETAGADRV---LTVDLHSPQIQG-FFDVPVDNLYASP----VLAEY----LKEKLP-LDDPVVVSPDKG  170 (316)
T ss_pred             CHHHHHHHHHHHHCCCCEE---EEEECCCHHHHH-CCCCCCCCCCHHH----HHHHH----HHHHCC-CCCCEEEECCCC
T ss_conf             3048899999863274326---885045122210-0234101221157----88888----875327-766468606732


Q ss_pred             HHHHHHHHHHHCC-CCEEEEECCCC-CCHH--HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             2578899985158-71787631564-2011--001331037334144087887322369999999986598785688887
Q gi|254781011|r   88 GIPFATLLAERLN-LPMIYVRKKSK-KHGQ--KSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus        88 Gip~a~~iA~~l~-~p~~~vRK~~K-~hG~--~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii  163 (228)
                      |+..+..++..++ .|+.++.|... .+..  ...+.|. .+|+.++++||++.|||++..+.+.+++.|++-+-+.+.-
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~k~r~~~~~~~~~~~~~~~-~~g~~~~~~dd~~~~gg~~~~~~~~l~~~g~~~~~~~~~h  249 (316)
T TIGR01251       171 GVERAKSVADALGDLPLALIDKRRPSAPNEVEVLPLLGD-VEGKDVVLVDDIIDTGGTLVKAAELLKEKGAKKVYAAATH  249 (316)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             367888999760676423333113676432354310002-3675278860210021358999999863484427876512


Q ss_pred             ECCCCH-HHHHHHHHCC
Q ss_conf             417632-4899999779
Q gi|254781011|r  164 FYDIFP-EVPARFRENN  179 (228)
Q Consensus       164 ~~~~~~-~~~~~l~~~g  179 (228)
                        ..+. .+.+++.+.+
T Consensus       250 --~~~~~~~~~~~~~~~  264 (316)
T TIGR01251       250 --GVFSGPALERLANAG  264 (316)
T ss_pred             --CHHCCHHHHHHHHCC
T ss_conf             --200214688865111


No 73 
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854    Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP .  5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O   This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.  ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=97.76  E-value=8.3e-05  Score=52.24  Aligned_cols=138  Identities=16%  Similarity=0.206  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH--HHHHCCCCE--EE--EEC-----C-CCCC----H---H
Q ss_conf             8999999999999866421756667899822312578899--985158717--87--631-----5-6420----1---1
Q gi|254781011|r   55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATL--LAERLNLPM--IY--VRK-----K-SKKH----G---Q  115 (228)
Q Consensus        55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~--iA~~l~~p~--~~--vRK-----~-~K~h----G---~  115 (228)
                      -..|..+...+++.....   .+.|.|++||-.|+|.|..  .|+..++|+  -+  +|=     . |-..    +   +
T Consensus       274 y~aR~~mG~~La~~~~~p---veaDvVvPVPDSG~~aA~G~Afa~~sG~PY~EGl~kNRYVGRTF~~P~Q~~R~~~Vr~k  350 (467)
T TIGR01134       274 YYARVRMGEELAEESREP---VEADVVVPVPDSGRPAALGLAFAQESGIPYREGLVKNRYVGRTFMMPTQELRELSVRLK  350 (467)
T ss_pred             HHHHHHHHHHHHHHHCCC---CCCCEECCCCCCCHHHHHHHHHHHHHCCCCHHCCEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             778999999999971378---88763328888860589999999870887025556624301013488878987321121


Q ss_pred             HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-E-E-E----ECC-CCHHHHHHHH----------H
Q ss_conf             001331037334144087887322369999999986598785688-8-8-7----417-6324899999----------7
Q gi|254781011|r  116 KSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI-G-L-F----FYD-IFPEVPARFR----------E  177 (228)
Q Consensus       116 ~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~-v-i-i----~~~-~~~~~~~~l~----------~  177 (228)
                      -+-++. ...|+|||||||=|--|+|....|++||++||+=+.+- + = +    .|+ =++...|.+.          +
T Consensus       351 LnP~r~-~~~GkrVvlVDDSiVRGTTSr~vV~mlR~AGA~EVH~riasPP~~~PC~YGiDmpt~~EL~A~~~~~~e~~~~  429 (467)
T TIGR01134       351 LNPVRS-VVEGKRVVLVDDSIVRGTTSRQVVEMLRDAGAREVHVRIASPPVRYPCYYGIDMPTREELAAARHTVEEIRRE  429 (467)
T ss_pred             CCCCHH-HHCCCEEEEEECCEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHH
T ss_conf             044303-3369758999424120713789999998729838987625888886583335375389873187768988766


Q ss_pred             CCCEEEEECCHHHHHHHHH
Q ss_conf             7980999632999999999
Q gi|254781011|r  178 NNIKLHYLATWNDILTIAE  196 (228)
Q Consensus       178 ~gi~~~sl~t~~~il~~l~  196 (228)
                      .|....+=+++++|.+-..
T Consensus       430 ~GADsL~YLSlegL~~a~~  448 (467)
T TIGR01134       430 IGADSLAYLSLEGLVAAVG  448 (467)
T ss_pred             CCCCEEEECCHHHHHHHHH
T ss_conf             0775135358899999853


No 74 
>KOG0572 consensus
Probab=97.70  E-value=9.1e-05  Score=51.96  Aligned_cols=87  Identities=22%  Similarity=0.362  Sum_probs=66.0

Q ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECC--------C----CCCHHH---HHHHHCCCCCCCEEEHHHHH
Q ss_conf             756667899822312578899985158717--876315--------6----420110---01331037334144087887
Q gi|254781011|r   74 GFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKK--------S----KKHGQK---SQIEGHLFKGARVLVIEDLV  136 (228)
Q Consensus        74 ~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~--------~----K~hG~~---~~iEG~~~~g~~vliVDDvi  136 (228)
                      ...+.|++..+|-.|.+-|-..|.+.++||  +++|..        +    ...|-.   +.+... -+|+||++|||-|
T Consensus       288 ~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~-~~GKrvvlVDDSI  366 (474)
T KOG0572         288 APVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQN-FEGKRVVLVDDSI  366 (474)
T ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCEECCCCHHHHHHHHHHHCCCCHHH-CCCCEEEEEECCE
T ss_conf             874455588579850378888888709960552001231351000764788886476650532344-0785699973654


Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             3223699999999865987856888
Q gi|254781011|r  137 TLGNSMFEFVKVIRDSGGIIQDGIG  161 (228)
Q Consensus       137 TtG~S~~~~i~~l~~~g~~V~~~~v  161 (228)
                      --|.|+...++.+|++||+-+.+..
T Consensus       367 VRGtTs~~IVkmlreaGAkeVh~ri  391 (474)
T KOG0572         367 VRGTTSSPIVKMLREAGAKEVHIRI  391 (474)
T ss_pred             ECCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf             2267538999999875885789882


No 75 
>TIGR00201 comF comF family protein; InterPro: IPR005222   Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system ..
Probab=97.59  E-value=2e-05  Score=56.26  Aligned_cols=107  Identities=25%  Similarity=0.303  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHH---HCCCCCCCEEEEEC-------CCHHHHHHHHHHHCCCCE-------EEEECCC--CCCHHH-
Q ss_conf             999999999998664---21756667899822-------312578899985158717-------8763156--420110-
Q gi|254781011|r   57 ARSMIMDLTAKTVLR---NIGFESIDIIAGGE-------TAGIPFATLLAERLNLPM-------IYVRKKS--KKHGQK-  116 (228)
Q Consensus        57 ~~~~i~~~~~~~i~~---~~~~~~~d~I~G~a-------~~Gip~a~~iA~~l~~p~-------~~vRK~~--K~hG~~-  116 (228)
                      ..+.+...++..+..   -.....+|.|+.+|       -.|.--+-.+|..|+-|.       ++.|+..  +-++.. 
T Consensus        67 I~~~L~~~l~~~~~~~~~T~~L~lp~~iV~vPl~~~R~~~rGFnq~~lL~~~LsR~~~~~n~~~~~~R~~~T~~Q~~~~~  146 (207)
T TIGR00201        67 IARALASLLALTVSKAKRTTQLDLPDQIVPVPLSKKRKWRRGFNQADLLAQLLSRWLDIFNYSNIVSRLKNTKTQKLLKA  146 (207)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHH
T ss_conf             99998899999986031000235886044057763532115777789987521530002342003432002034666658


Q ss_pred             ----HHHHHC--------CCCCCCEEEHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEE
Q ss_conf             ----013310--------37334144087887322369999999986-598785688887
Q gi|254781011|r  117 ----SQIEGH--------LFKGARVLVIEDLVTLGNSMFEFVKVIRD-SGGIIQDGIGLF  163 (228)
Q Consensus       117 ----~~iEG~--------~~~g~~vliVDDviTtG~S~~~~i~~l~~-~g~~V~~~~vii  163 (228)
                          +..|..        -.+|.+|+|||||+|||.|+-++.+.|.+ .||.-+-++++.
T Consensus       147 ~~R~~nl~n~f~l~~~~~~~~~~~ivL~DD~~TTGatl~~~~~lLl~k~ga~~V~~~~L~  206 (207)
T TIGR00201       147 KLRKKNLENAFKLKSKKKEFQGRKIVLVDDVVTTGATLAEIAKLLLKKLGAAKVQVWSLA  206 (207)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf             777777556665420324688755899704510123689999999864570011441206


No 76 
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=97.45  E-value=0.00096  Score=45.30  Aligned_cols=112  Identities=22%  Similarity=0.239  Sum_probs=77.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC---------CCE-----EEEECCCCCCHH
Q ss_conf             135798999999999999866421756667899822312578899985158---------717-----876315642011
Q gi|254781011|r   50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN---------LPM-----IYVRKKSKKHGQ  115 (228)
Q Consensus        50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~---------~p~-----~~vRK~~K~hG~  115 (228)
                      .++.+......+ +.++..|.+...+..+ +++++=-||..|.+-+...++         .|.     =|+|-  |.|+.
T Consensus        43 VlIP~g~I~dRi-e~LA~dI~~dy~g~~i-~llcVLKG~~~F~aDLv~~l~~~~~~s~~~~~~~~~~~dFi~v--sSY~~  118 (231)
T PTZ00149         43 VLIPNGVIKNRI-EKLAFDIKKVYNNEEF-HIICLLKGSRGFFSALLKHLNRIHNYSATESPKHLFGEHYVRV--KSYCN  118 (231)
T ss_pred             EECCHHHHHHHH-HHHHHHHHHHHCCCCE-EEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEE--EECCC
T ss_conf             971679999999-9999999998489817-9999964627889999999876510444456652220005898--50279


Q ss_pred             HH-----HHHH---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf             00-----1331---03733414408788732236999999998659878568888741
Q gi|254781011|r  116 KS-----QIEG---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY  165 (228)
Q Consensus       116 ~~-----~iEG---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~  165 (228)
                      ..     +|-+   ...+|++||||||++-||.|+....+.+++.+..-+.++++++.
T Consensus       119 ~~SsG~v~i~~d~~~~l~gk~VLIVEDIvDTG~Tl~~l~~~l~~~~p~svkv~~LL~K  176 (231)
T PTZ00149        119 DQSLDRIEIVSEDLSCLKDKHVLIVEDIIDTGKTLLKFCEYLKKFEIKTIAIACLFIK  176 (231)
T ss_pred             CCCCCCEEEECCCCCCCCCCEEEEEECEECHHHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf             8766736992266332689849999552771789999999997379996899997856


No 77 
>KOG3367 consensus
Probab=96.84  E-value=0.006  Score=40.13  Aligned_cols=109  Identities=27%  Similarity=0.366  Sum_probs=72.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH-CC------CCE--EEEECCCCCCHHHH-----
Q ss_conf             57989999999999998664217566678998223125788999851-58------717--87631564201100-----
Q gi|254781011|r   52 ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAER-LN------LPM--IYVRKKSKKHGQKS-----  117 (228)
Q Consensus        52 ~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~-l~------~p~--~~vRK~~K~hG~~~-----  117 (228)
                      +-+.-.+..+ +-++.-|.+..+. ..=+..++..||--|.+.+-.+ .+      +||  =|+|-+  .|+...     
T Consensus        37 ip~gli~dr~-~rlakDi~~~~g~-~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~k--SY~n~~stg~i  112 (216)
T KOG3367          37 IPHGLIRDRV-ERLAKDIMKEIGN-KPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAK--SYCNDQSTGDI  112 (216)
T ss_pred             CCCCHHHHHH-HHHHHHHHHCCCC-CCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHH--HHCCCCCCCCC
T ss_conf             3541135678-7763245541277-851899983241688999999975024577765044554400--21477655785


Q ss_pred             HHHH----CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf             1331----0373341440878873223699999999865987856888874
Q gi|254781011|r  118 QIEG----HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF  164 (228)
Q Consensus       118 ~iEG----~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~  164 (228)
                      ++.|    .-..|++|+||||++-||.++...+..+++.+.+-+.++.+++
T Consensus       113 qiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~  163 (216)
T KOG3367         113 QIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLV  163 (216)
T ss_pred             EEECCCCHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             166478777735772899974013561078999988860863114322003


No 78 
>TIGR01091 upp uracil phosphoribosyltransferase; InterPro: IPR005765    The enzyme uracil phosphoribosyltransferase (UPRT, 2.4.2.9 from EC) catalyzes conversion of uracil to uridine 5'-monophosphate utilizing 5'-phosphoribosyl--1-pyrophosphate (PRPP).  UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate  ; GO: 0004845 uracil phosphoribosyltransferase activity, 0006223 uracil salvage.
Probab=96.47  E-value=0.0033  Score=41.83  Aligned_cols=113  Identities=12%  Similarity=0.201  Sum_probs=71.1

Q ss_pred             EEEEECCCHHHHHHHHHHHC---CCCE-EEEECCCCCCHHHHHHH-----HCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
Q ss_conf             89982231257889998515---8717-87631564201100133-----103733414408788732236999999998
Q gi|254781011|r   80 IIAGGETAGIPFATLLAERL---NLPM-IYVRKKSKKHGQKSQIE-----GHLFKGARVLVIEDLVTLGNSMFEFVKVIR  150 (228)
Q Consensus        80 ~I~G~a~~Gip~a~~iA~~l---~~p~-~~vRK~~K~hG~~~~iE-----G~~~~g~~vliVDDviTtG~S~~~~i~~l~  150 (228)
                      +|+.+=-+|+|+.=.+...+   .+.+ ...|-+.-  |.-+-..     -....+..|+|+|=.+.||+|+.++++.|+
T Consensus        75 v~vPILRAGLgm~dG~~~~~P~A~vG~~G~~R~eeT--G~l~~~~Yy~KLP~~~~~~~v~v~DPMLATGgt~~~a~~~lk  152 (213)
T TIGR01091        75 VLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEET--GELKPVVYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLK  152 (213)
T ss_pred             EEEEECCCHHHHHHHHHHHCCCCEEEEEEEEECCCC--CCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             999610102689999998488771899987736999--852025322005434688869997287343058999999998


Q ss_pred             HCCCEEEEEEEEEECCCCHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCCCC
Q ss_conf             6598785688887417632489999977--98099963299999999988899
Q gi|254781011|r  151 DSGGIIQDGIGLFFYDIFPEVPARFREN--NIKLHYLATWNDILTIAEKLKIF  201 (228)
Q Consensus       151 ~~g~~V~~~~vii~~~~~~~~~~~l~~~--gi~~~sl~t~~~il~~l~~~~~I  201 (228)
                      +.|+.=.-+++|+  - -+.|-+++++.  +|++|. +.+++=|+   +.|||
T Consensus       153 ~~g~~~I~~~~~v--A-APeG~~~v~~~hpdV~iyt-A~iDe~LN---e~GYI  198 (213)
T TIGR01091       153 KRGAKKIKVLSIV--A-APEGIEAVQKAHPDVDIYT-AAIDEKLN---EKGYI  198 (213)
T ss_pred             HCCCCCEEEEEEE--E-CHHHHHHHHHHCCCCEEEE-EEECCCCC---CCCEE
T ss_conf             5399944999998--2-5578999998469946999-97347448---86001


No 79 
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=96.17  E-value=0.096  Score=32.27  Aligned_cols=113  Identities=13%  Similarity=0.182  Sum_probs=63.3

Q ss_pred             EEECCCHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHH--HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             982231257889998515---871787631564201100133--103733414408788732236999999998659878
Q gi|254781011|r   82 AGGETAGIPFATLLAERL---NLPMIYVRKKSKKHGQKSQIE--GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII  156 (228)
Q Consensus        82 ~G~a~~Gip~a~~iA~~l---~~p~~~vRK~~K~hG~~~~iE--G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V  156 (228)
                      +.+--+|.++-..+-..+   ...++-+++..+.+--.-..+  ....++.+|+++|-+++||+|+..+++.|++.|++=
T Consensus        74 V~ILRAGl~m~~~~~~~~P~a~vg~Igi~Rde~T~~p~~yy~kLP~~i~~~~VlllDPmlATG~s~~~ai~~L~~~G~~~  153 (208)
T PRK00129         74 VPILRAGLGMVDGVLKLIPSARVGHVGAYRDEETLEPVEYLEKLPSDIDERTVIVVDPMLATGGSMIAAIDLLKKRGAKR  153 (208)
T ss_pred             EEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCE
T ss_conf             98616516588999986887540058899547777706756328644466879987855643766999999999669973


Q ss_pred             EEEEEEEECCCCHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCCCC
Q ss_conf             5688887417632489999977--98099963299999999988899
Q gi|254781011|r  157 QDGIGLFFYDIFPEVPARFREN--NIKLHYLATWNDILTIAEKLKIF  201 (228)
Q Consensus       157 ~~~~vii~~~~~~~~~~~l~~~--gi~~~sl~t~~~il~~l~~~~~I  201 (228)
                      .-+++++  - -+.|-+++.+.  +++++. ..+++-++   +.++|
T Consensus       154 I~~v~~i--a-s~~Gi~~v~~~~P~v~I~t-a~iD~~Ln---e~~yI  193 (208)
T PRK00129        154 IKVLCLV--A-APEGIKALEEAHPDVEIYT-AAIDEKLN---EHGYI  193 (208)
T ss_pred             EEEEEEE--E-CHHHHHHHHHHCCCCEEEE-EEECCCCC---CCCCC
T ss_conf             8999999--6-4899999998787978999-98377737---78758


No 80 
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=95.17  E-value=0.079  Score=32.80  Aligned_cols=72  Identities=13%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             CCCCCCEEEHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCHHHHHHHHH--CCCEEEEECCHHHHHHHHHHCC
Q ss_conf             373341440878873223699999999865-9878568888741763248999997--7980999632999999999888
Q gi|254781011|r  123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDS-GGIIQDGIGLFFYDIFPEVPARFRE--NNIKLHYLATWNDILTIAEKLK  199 (228)
Q Consensus       123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~-g~~V~~~~vii~~~~~~~~~~~l~~--~gi~~~sl~t~~~il~~l~~~~  199 (228)
                      ..++..|+++|=.++||+|+..+++.|++. |++=.-+++++-   -+.|-+++.+  -+++++... +++-   |-+.+
T Consensus       121 ~~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vA---apeGi~~v~~~~p~v~I~ta~-iD~~---Lne~g  193 (210)
T COG0035         121 DIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVA---APEGIKAVEKAHPDVEIYTAA-IDEG---LNEKG  193 (210)
T ss_pred             CCCCCEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEEEE---CHHHHHHHHHHCCCCEEEEEE-ECCC---CCCCC
T ss_conf             6468859997861412676999999999718975289999996---489999999868997599998-0412---05688


Q ss_pred             CC
Q ss_conf             99
Q gi|254781011|r  200 IF  201 (228)
Q Consensus       200 ~I  201 (228)
                      ||
T Consensus       194 YI  195 (210)
T COG0035         194 YI  195 (210)
T ss_pred             CC
T ss_conf             77


No 81 
>TIGR01078 arcA arginine deiminase; InterPro: IPR003876 This is a family of arginine deiminases, 3.5.3.6 from EC. The aligned region corresponds to the C-terminal of the protein. These enzymes catalyse the conversion of arginine + H2O to citrulline + NH3. Also found in this family is the Streptococcus anti tumor glycoprotein .; GO: 0016990 arginine deiminase activity, 0006527 arginine catabolic process.
Probab=86.33  E-value=0.37  Score=28.43  Aligned_cols=53  Identities=15%  Similarity=0.088  Sum_probs=40.8

Q ss_pred             HHHHHH---HHHHHHHHHHHHCCCEEEEE--EEEEECCCCHHHHHHHHHCCCEEEEEC
Q ss_conf             887322---36999999998659878568--888741763248999997798099963
Q gi|254781011|r  134 DLVTLG---NSMFEFVKVIRDSGGIIQDG--IGLFFYDIFPEVPARFRENNIKLHYLA  186 (228)
Q Consensus       134 DviTtG---~S~~~~i~~l~~~g~~V~~~--~vii~~~~~~~~~~~l~~~gi~~~sl~  186 (228)
                      +||+||   ++..+|-+-==+=|.+|.++  -|||-|+|..-..++|+++||+++.+-
T Consensus       341 ~~I~~GGeGg~~~~AeREQWnDG~N~Lai~PGVVv~Y~RN~~TN~~L~~~GIkVl~i~  398 (421)
T TIGR01078       341 RLIPTGGEGGDSVEAEREQWNDGNNVLAIAPGVVVGYERNVVTNALLEKAGIKVLTIP  398 (421)
T ss_pred             EEEECCCCCCCCCEECCCCCCCCCCEEEECCCEEEEECCHHHHHHHHHHCCCEEEEEC
T ss_conf             4885068899742106521107875588638678951552678899986596899844


No 82 
>KOG1503 consensus
Probab=82.03  E-value=4.6  Score=21.29  Aligned_cols=103  Identities=17%  Similarity=0.261  Sum_probs=62.8

Q ss_pred             EEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHC--------------------------------CCCCC
Q ss_conf             8998223125788999851587178763156420110013310--------------------------------37334
Q gi|254781011|r   80 IIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH--------------------------------LFKGA  127 (228)
Q Consensus        80 ~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~--------------------------------~~~g~  127 (228)
                      +|+.-.-+.---|...|.+|.+.+..+.-|.|+- +..++.|.                                ...|.
T Consensus       170 vivaksp~~akka~syaerlrlglavihge~k~~-e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppltvvgdvggr  248 (354)
T KOG1503         170 VIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDT-ESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLTVVGDVGGR  248 (354)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCE
T ss_conf             7996282166677769998741314764343353-124435775979743344476545714432569983798226865


Q ss_pred             CEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH-HHHHHHHHCCCEEEEE
Q ss_conf             144087887322369999999986598785688887417632-4899999779809996
Q gi|254781011|r  128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP-EVPARFRENNIKLHYL  185 (228)
Q Consensus       128 ~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~-~~~~~l~~~gi~~~sl  185 (228)
                      -.++|||++-.-.|-..+.+.|++.|+--.  +|+-.++... .+...+++.-|.-.-+
T Consensus       249 iaimvddiiddvqsfvaaae~lkergayki--yv~athgllssdapr~lees~idevvv  305 (354)
T KOG1503         249 IAIMVDDIIDDVQSFVAAAEVLKERGAYKI--YVMATHGLLSSDAPRLLEESPIDEVVV  305 (354)
T ss_pred             EEEEEHHHHHHHHHHHHHHHHHHHCCCEEE--EEEEECCCCCCCCHHHHHCCCCCEEEE
T ss_conf             899853357769999999999985585589--998604534566523441188745998


No 83 
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149   This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=81.94  E-value=4.3  Score=21.47  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHCCCEEE--ECCCCEE---EECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             78999999999986597682--0789867---311872640142621357989999999999998664217566678998
Q gi|254781011|r    9 QNIIAELVAKMLFEIKAVNF--SPENPYH---LTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAG   83 (228)
Q Consensus         9 ~~~~~~~~a~~L~~~~ai~~--~~~g~F~---L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G   83 (228)
                      +..|-.+++.+|=|.+.+..  +|||..+   |.+|.    +| +- ....|.....|+..+|+.+-....-.++=+=+-
T Consensus         7 ~~~lG~~i~~~LdD~~vvEIMLNpDG~Lwve~Lg~G~----~~-~G-~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegE   80 (315)
T TIGR02782         7 RRALGPEIAAALDDPKVVEIMLNPDGKLWVERLGEGM----EP-LG-KTVSPADAERIIGLVADYLGTEVDRDKPIVEGE   80 (315)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCC----CC-CC-CCCCHHHHHHHHHHHHHHHCCEEECCCCEEEEC
T ss_conf             9998999999737988389986698701050067973----00-16-611789999999999876446043578626610


Q ss_pred             ECCCHHHHHHHHHHH----CCCCEEEEECCCC
Q ss_conf             223125788999851----5871787631564
Q gi|254781011|r   84 GETAGIPFATLLAER----LNLPMIYVRKKSK  111 (228)
Q Consensus        84 ~a~~Gip~a~~iA~~----l~~p~~~vRK~~K  111 (228)
                      .|..  .+++=++-.    ..-|.+-+||++-
T Consensus        81 LPld--flGsRFeGl~PPVV~~p~F~IRkkA~  110 (315)
T TIGR02782        81 LPLD--FLGSRFEGLLPPVVEAPSFAIRKKAV  110 (315)
T ss_pred             CCCC--HHHCCCCCCCCCCCCCCCCHHCCCCC
T ss_conf             7511--12011004687755655101110224


No 84 
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=79.17  E-value=1.5  Score=24.51  Aligned_cols=34  Identities=24%  Similarity=0.500  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHCCCEEEECC-------CCEEEECCCCCCEEE
Q ss_conf             999999999986597682078-------986731187264014
Q gi|254781011|r   11 IIAELVAKMLFEIKAVNFSPE-------NPYHLTSGIVSPLYI   46 (228)
Q Consensus        11 ~~~~~~a~~L~~~~ai~~~~~-------g~F~L~SG~~Sp~Y~   46 (228)
                      .++..+ -.|+. .-++++|+       ..|+|+.|-.||.+.
T Consensus        30 s~adi~-~~L~~-~~l~~~p~~p~w~~RDRfvLS~GH~s~~lY   70 (333)
T pfam00456        30 GMAPIA-EVLFK-RTLRHNPNDPKWPNRDRFVLSNGHASMLLY   70 (333)
T ss_pred             HHHHHH-HHHHH-HHHCCCCCCCCCCCCCEEEEECCCHHHHHH
T ss_conf             999999-99999-982779779899898749996740469999


No 85 
>PRK07105 pyridoxamine kinase; Validated
Probab=78.08  E-value=6.2  Score=20.46  Aligned_cols=35  Identities=9%  Similarity=0.139  Sum_probs=17.8

Q ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             32999999999888999899999999997299778
Q gi|254781011|r  186 ATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWS  220 (228)
Q Consensus       186 ~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~  220 (228)
                      +++.-++......|.=-++-.+.-.+|...=.+-.
T Consensus       222 d~fss~iaa~la~G~~l~~Av~~A~~fv~~aI~~T  256 (284)
T PRK07105        222 DIFTSVITGSLLQGLSLPQALDRAVQFIEKGIRAT  256 (284)
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             78999999999879999999999999999999988


No 86 
>PRK01388 arginine deiminase; Provisional
Probab=76.33  E-value=4  Score=21.71  Aligned_cols=51  Identities=12%  Similarity=0.054  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEE--EEEEECCCCHHHHHHHHHCCCEEEEE
Q ss_conf             8732236999999998659878568--88874176324899999779809996
Q gi|254781011|r  135 LVTLGNSMFEFVKVIRDSGGIIQDG--IGLFFYDIFPEVPARFRENNIKLHYL  185 (228)
Q Consensus       135 viTtG~S~~~~i~~l~~~g~~V~~~--~vii~~~~~~~~~~~l~~~gi~~~sl  185 (228)
                      +|.+||..+.+..---.-|+++..+  -+|+.|+|.....+.|+++||+++.+
T Consensus       334 lI~~GgD~~~~~rEQw~dg~N~Lai~Pg~Vv~Y~rN~~Tn~~L~~~Gi~Vi~i  386 (410)
T PRK01388        334 VIETGGDPIAAEREQWNDGNNTLAIAPGVVVGYDRNTVTNTLLRKAGIEVITI  386 (410)
T ss_pred             EEECCCCCHHHHHHHHCCCCCEEEECCCEEEEECCCHHHHHHHHHCCCEEEEE
T ss_conf             97059961155676523675669966988998568789999999779989997


No 87 
>COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism]
Probab=73.48  E-value=3.7  Score=21.93  Aligned_cols=54  Identities=19%  Similarity=0.108  Sum_probs=39.2

Q ss_pred             HHHHHHH-HHHHHHHHHHHCCCEEEEE--EEEEECCCCHHHHHHHHHCCCEEEEECC
Q ss_conf             8873223-6999999998659878568--8887417632489999977980999632
Q gi|254781011|r  134 DLVTLGN-SMFEFVKVIRDSGGIIQDG--IGLFFYDIFPEVPARFRENNIKLHYLAT  187 (228)
Q Consensus       134 DviTtG~-S~~~~i~~l~~~g~~V~~~--~vii~~~~~~~~~~~l~~~gi~~~sl~t  187 (228)
                      |++.+|+ +...+-+.-.+.|.++..+  -+|+.|||.--..+.+.+.||+++.+-.
T Consensus       331 ~~I~~gg~d~i~~~reqw~dg~N~L~i~PG~Vv~ydrN~~tN~~l~e~Gi~Vi~I~~  387 (409)
T COG2235         331 RLIETGGGDVIAAEREQWDDGTNTLTIAPGVVVAYDRNIYTNNLLREAGIKVITIPG  387 (409)
T ss_pred             EEEEECCCCCCHHHHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHCCCEEEEEEC
T ss_conf             089947986225369875057765874597788335874435668875968999743


No 88 
>TIGR00502 nagB glucosamine-6-phosphate isomerase; InterPro: IPR004547 Glucosamine-6-phosphate isomerase (3.5.99.6 from EC) catalyses the conversion of D-glucosamine 6-phosphate and water to D-fructose 6-phosphate in the N-acetylglucosamine utilization pathway. The enzyme was formerly classified as EC 5.3.1.10. This family also includes a closely related pair of proteins from Bacillus subtilis, one of which is uncharacterised but included as a member of the orthologous set.; GO: 0004342 glucosamine-6-phosphate deaminase activity, 0006044 N-acetylglucosamine metabolic process.
Probab=71.64  E-value=4.9  Score=21.13  Aligned_cols=37  Identities=19%  Similarity=0.201  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCC-E---EEEECCCHHHHHHH
Q ss_conf             9999999999866421756667-8---99822312578899
Q gi|254781011|r   58 RSMIMDLTAKTVLRNIGFESID-I---IAGGETAGIPFATL   94 (228)
Q Consensus        58 ~~~i~~~~~~~i~~~~~~~~~d-~---I~G~a~~Gip~a~~   94 (228)
                      ...|+...|..|.+.+.--++| .   |.|.|+||-|+++-
T Consensus         9 ~E~~sk~AA~~i~~~I~~Fkp~~~~PFVLGLpTGgTP~g~Y   49 (260)
T TIGR00502         9 YEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPVGTY   49 (260)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHH
T ss_conf             76899999999999864037762367461068888757899


No 89 
>pfam06616 BsuBI_PstI_RE BsuBI/PstI restriction endonuclease C-terminus. This family represents the C-terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (EC:3.1.21.4). The enzymes of the BsuBI restriction/modification (R/M) system recognize the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system.
Probab=70.76  E-value=9.4  Score=19.29  Aligned_cols=41  Identities=12%  Similarity=0.027  Sum_probs=24.2

Q ss_pred             CCCCEEEHHHHHHHH----HHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf             334144087887322----36999999998659878568888741
Q gi|254781011|r  125 KGARVLVIEDLVTLG----NSMFEFVKVIRDSGGIIQDGIGLFFY  165 (228)
Q Consensus       125 ~g~~vliVDDviTtG----~S~~~~i~~l~~~g~~V~~~~vii~~  165 (228)
                      ..+-.++||=|.|.|    .-..+.-++.+++-+.++-+-+..+|
T Consensus       224 ~~~wL~liEaVtS~GPv~~~R~~eL~~l~~~~~~~lvfVTAF~dR  268 (306)
T pfam06616       224 GKKWLVLVEVVASDGPVDGKRHEELAKLFADAPAGLVFVTAFPDR  268 (306)
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCH
T ss_conf             899699999973779989899999999985388886999955898


No 90 
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems.  Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2).  MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster.  Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=66.01  E-value=12  Score=18.66  Aligned_cols=69  Identities=20%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             HHHHHHHHCCCCEEEEECC-------CCCCHH-----HHHHHHCCC---CCC-CEEEHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             8899985158717876315-------642011-----001331037---334-144087887322369999999986598
Q gi|254781011|r   91 FATLLAERLNLPMIYVRKK-------SKKHGQ-----KSQIEGHLF---KGA-RVLVIEDLVTLGNSMFEFVKVIRDSGG  154 (228)
Q Consensus        91 ~a~~iA~~l~~p~~~vRK~-------~K~hG~-----~~~iEG~~~---~g~-~vliVDDviTtG~S~~~~i~~l~~~g~  154 (228)
                      .+...+.++++|.+.+.-+       .++|-.     -+++.|.-+   ++. .|-||=+- .-|+-..+.-..|++.|.
T Consensus       121 V~~~~~~~~gipVIpv~~~GF~g~s~~~G~~~a~~al~~~vv~~~~~~~~~~~~iNiige~-ni~gd~~~i~~lL~~mGi  199 (421)
T cd01976         121 VARKASKELGIPVVPVRCEGFRGVSQSLGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDY-NIGGDAWASRILLEEMGL  199 (421)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC-CCCCCHHHHHHHHHHCCC
T ss_conf             9999877529988998689857752306889999999998416688778898417997556-676329999999998398


Q ss_pred             EEEEEE
Q ss_conf             785688
Q gi|254781011|r  155 IIQDGI  160 (228)
Q Consensus       155 ~V~~~~  160 (228)
                      +|..++
T Consensus       200 ~V~~~~  205 (421)
T cd01976         200 RVVAQW  205 (421)
T ss_pred             CEEEEE
T ss_conf             379998


No 91 
>PTZ00089 transketolase; Provisional
Probab=65.08  E-value=9.6  Score=19.24  Aligned_cols=29  Identities=28%  Similarity=0.533  Sum_probs=19.5

Q ss_pred             HHHHHHHCCCEEEECC-------CCEEEECCCCCCEE
Q ss_conf             9999986597682078-------98673118726401
Q gi|254781011|r   16 VAKMLFEIKAVNFSPE-------NPYHLTSGIVSPLY   45 (228)
Q Consensus        16 ~a~~L~~~~ai~~~~~-------g~F~L~SG~~Sp~Y   45 (228)
                      ++-.|+ ..-++|+|+       ..|+|+.|-.||..
T Consensus        38 i~~~L~-~~~l~~~p~~p~w~~RDrfvlS~GH~s~~l   73 (670)
T PTZ00089         38 IAHILW-AYVMNYYNEDTKWINRDRFILSNGHASALL   73 (670)
T ss_pred             HHHHHH-HHHCCCCCCCCCCCCCCEEEECCCCHHHHH
T ss_conf             999999-986033988949999986997551277999


No 92 
>PRK12753 transketolase; Reviewed
Probab=63.95  E-value=13  Score=18.42  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHCCCEEEECC-------CCEEEECCCCCCEEE
Q ss_conf             8999999999986597682078-------986731187264014
Q gi|254781011|r   10 NIIAELVAKMLFEIKAVNFSPE-------NPYHLTSGIVSPLYI   46 (228)
Q Consensus        10 ~~~~~~~a~~L~~~~ai~~~~~-------g~F~L~SG~~Sp~Y~   46 (228)
                      ..+++. +-.|+. .-++++|+       ..|+|+.|-.||...
T Consensus        30 l~~a~i-~~~L~~-~~~~~~p~~p~~~~rDrfvls~GH~s~~lY   71 (662)
T PRK12753         30 MGMADI-AEVLWR-DFLKHNPTNPTWYDRDRFILSNGHASMLLY   71 (662)
T ss_pred             HHHHHH-HHHHHH-HHHCCCCCCCCCCCCCEEEEECCCCHHHHH
T ss_conf             679999-999999-861269889599888869986754029999


No 93 
>KOG1017 consensus
Probab=63.53  E-value=12  Score=18.49  Aligned_cols=60  Identities=22%  Similarity=0.283  Sum_probs=40.5

Q ss_pred             CCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECC
Q ss_conf             34144087887322369999999986598785688887417632489999977980999632
Q gi|254781011|r  126 GARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLAT  187 (228)
Q Consensus       126 g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t  187 (228)
                      -.+|++.=-.++||.++.+|++.|+++|..-..++ +++-=..+.|.+++-.. ++...+++
T Consensus       189 sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~Ii-L~sLF~tP~gak~i~~~-fP~itilt  248 (267)
T KOG1017         189 SRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNII-LVSLFITPTGAKNITRK-FPYITILT  248 (267)
T ss_pred             CEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEE-EEEEECCCHHHHHHHHH-CCEEEEEE
T ss_conf             21689984130478138999999998199960089-87743165056788875-97369984


No 94 
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=61.82  E-value=14  Score=18.17  Aligned_cols=19  Identities=5%  Similarity=0.095  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHCCCEEEEE
Q ss_conf             6999999998659878568
Q gi|254781011|r  141 SMFEFVKVIRDSGGIIQDG  159 (228)
Q Consensus       141 S~~~~i~~l~~~g~~V~~~  159 (228)
                      .+.++++.++..|++|.|+
T Consensus       252 ~l~~a~~~L~~~g~~VlGv  270 (274)
T TIGR03029       252 ELTSLKEHLSGVGVRVVGA  270 (274)
T ss_pred             HHHHHHHHHHHCCCCEEEE
T ss_conf             9999999999779966899


No 95 
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=61.32  E-value=14  Score=18.11  Aligned_cols=14  Identities=14%  Similarity=0.162  Sum_probs=4.5

Q ss_pred             HHHHHHHHCCCEEE
Q ss_conf             99999986598785
Q gi|254781011|r  144 EFVKVIRDSGGIIQ  157 (228)
Q Consensus       144 ~~i~~l~~~g~~V~  157 (228)
                      ++++.++.+|++|.
T Consensus       683 ~a~~~l~~~~~~v~  696 (726)
T PRK09841        683 LSMQRLEQAGVNIK  696 (726)
T ss_pred             HHHHHHHHCCCCEE
T ss_conf             99999997899758


No 96 
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758   The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:    (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.    Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC)  and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales .    This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=58.97  E-value=8.7  Score=19.50  Aligned_cols=123  Identities=18%  Similarity=0.147  Sum_probs=73.4

Q ss_pred             HHHHHHHCCCCE---------EEEECCCCCC-HHHHHHH--HCCCC---CCCEEEHHHHHHHHHHHHHHHHHHHHCCC-E
Q ss_conf             899985158717---------8763156420-1100133--10373---34144087887322369999999986598-7
Q gi|254781011|r   92 ATLLAERLNLPM---------IYVRKKSKKH-GQKSQIE--GHLFK---GARVLVIEDLVTLGNSMFEFVKVIRDSGG-I  155 (228)
Q Consensus        92 a~~iA~~l~~p~---------~~vRK~~K~h-G~~~~iE--G~~~~---g~~vliVDDviTtG~S~~~~i~~l~~~g~-~  155 (228)
                      |.++|..+++++         --+|+--++| |-+++.|  |....   +-.+++|||=.=.=+-+..+++++|+.=- +
T Consensus       305 A~ava~~~g~~~~G~~~~~~~~~I~~~L~~F~G~~RRf~~~g~~~~~~n~g~~~~~DDYAHHPtEi~aTl~aAr~~~~~k  384 (491)
T TIGR01082       305 AIAVALELGLDFYGKVIVDFLEAIKRALANFQGVKRRFEILGECNGGNNNGTVLLIDDYAHHPTEIKATLAAARQVYPDK  384 (491)
T ss_pred             HHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99888872212368556415899999985068973101201002789875279999658999789999999998752117


Q ss_pred             EEEEEEEEECCCCHHHHHHHHHC-----C-CEEEEEC-------------CHHHHHHHHHHCC----CCCHHHHHHHHHH
Q ss_conf             85688887417632489999977-----9-8099963-------------2999999999888----9998999999999
Q gi|254781011|r  156 IQDGIGLFFYDIFPEVPARFREN-----N-IKLHYLA-------------TWNDILTIAEKLK----IFNHDVLEEVRCF  212 (228)
Q Consensus       156 V~~~~vii~~~~~~~~~~~l~~~-----g-i~~~sl~-------------t~~~il~~l~~~~----~I~~~~~~~I~~~  212 (228)
                      =..++++|.-=||...+..+++-     . +...-|+             +..++...+.+.+    -+-.++...+.++
T Consensus       385 ~~r~v~~FQPHrYsRT~~~~~~F~~~L~~haD~l~~~diY~A~E~~~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~  464 (491)
T TIGR01082       385 NRRIVVVFQPHRYSRTKDLFDDFAKVLSDHADELILLDIYAAGEEPIAGIDGKSLARKITQKKGKEEPYFVPDLAEVVEF  464 (491)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             95799997498567899889999999973089999815321136776787789999998625787776104217789999


Q ss_pred             HH
Q ss_conf             97
Q gi|254781011|r  213 LD  214 (228)
Q Consensus       213 l~  214 (228)
                      +.
T Consensus       465 l~  466 (491)
T TIGR01082       465 LA  466 (491)
T ss_pred             HH
T ss_conf             99


No 97 
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=56.92  E-value=17  Score=17.63  Aligned_cols=44  Identities=25%  Similarity=0.343  Sum_probs=25.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE--EECCCHHH--HHHHHHHHCC
Q ss_conf             62135798999999999999866421756667899--82231257--8899985158
Q gi|254781011|r   48 CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIA--GGETAGIP--FATLLAERLN  100 (228)
Q Consensus        48 ~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~--G~a~~Gip--~a~~iA~~l~  100 (228)
                      -+.++.+|.-.-..    -+.|.+    .++|.|.  |++.||-.  +|+.+ ..++
T Consensus        11 G~piik~P~Dl~~~----qeii~~----~kPd~IIE~G~a~GGS~l~~A~~l-~~~~   58 (202)
T pfam04989        11 GRPIIKLPQDMVAY----QELIWE----LKPDLIIETGIAHGGSALFFASML-ELLG   58 (202)
T ss_pred             CEECCCCHHHHHHH----HHHHHH----HCCCEEEEECCCCCHHHHHHHHHH-HHHC
T ss_conf             85402498999999----999998----599989996167662899999999-9738


No 98 
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=56.53  E-value=6.9  Score=20.15  Aligned_cols=121  Identities=14%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             HHHHHHHCCCCEEEEECCCCCC-HHHHHHH--HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC
Q ss_conf             8999851587178763156420-1100133--103733414408788732236999999998659878568888741763
Q gi|254781011|r   92 ATLLAERLNLPMIYVRKKSKKH-GQKSQIE--GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIF  168 (228)
Q Consensus        92 a~~iA~~l~~p~~~vRK~~K~h-G~~~~iE--G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~  168 (228)
                      |.++|..++++.--+++.-++| |.+++.|  |.. +|  +.++||-.--=+-+..+++++|+.-..=..+++++.--|+
T Consensus       288 aia~a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g~~-~~--~~viDDYaHHPtEI~aTL~aaR~~~~~~~rIvaifQPHry  364 (459)
T COG0773         288 AIAVARELGIDPEAIAEALASFQGVKRRFELKGEV-NG--VTVIDDYAHHPTEIKATLAAARQKVPGGKRIVAVFQPHRY  364 (459)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEE-CC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf             99999984999899999997388964136886468-87--8998568889799999999999765888669999778731


Q ss_pred             HHHHHHHHHC-----CCEEEE-------------E-CCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             2489999977-----980999-------------6-329999999998889998999999999972
Q gi|254781011|r  169 PEVPARFREN-----NIKLHY-------------L-ATWNDILTIAEKLKIFNHDVLEEVRCFLDN  215 (228)
Q Consensus       169 ~~~~~~l~~~-----gi~~~s-------------l-~t~~~il~~l~~~~~I~~~~~~~I~~~l~d  215 (228)
                      ......+++-     .....-             . .+..+|.+.....++..-.+.+.+.+++..
T Consensus       365 SRt~~~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~  430 (459)
T COG0773         365 SRTRDLLDDFAKALSDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPGHVDVPDLDDLVELLAK  430 (459)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             758999999998885199999962333578887677539999998513770147888899999996


No 99 
>PRK12754 transketolase; Reviewed
Probab=55.75  E-value=7.2  Score=20.03  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHCCCEEEECC-------CCEEEECCCCCCE-EE
Q ss_conf             999999999986597682078-------9867311872640-14
Q gi|254781011|r   11 IIAELVAKMLFEIKAVNFSPE-------NPYHLTSGIVSPL-YI   46 (228)
Q Consensus        11 ~~~~~~a~~L~~~~ai~~~~~-------g~F~L~SG~~Sp~-Y~   46 (228)
                      -+++.+. .|+. .-++++|+       ..|+|+.|-.||. |.
T Consensus        32 g~~el~~-~L~~-~~~~~~p~~p~~~~rDr~v~s~GH~s~~~Y~   73 (663)
T PRK12754         32 GMADIAE-VLWR-DFLNHNPTNPSWADRDRFVLSNGHGSMLIYS   73 (663)
T ss_pred             HHHHHHH-HHHH-HHHCCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf             7999999-9999-9854797899987898499867530279999


No 100
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia.  This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent  nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=55.36  E-value=18  Score=17.47  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=20.9

Q ss_pred             CEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             144087887322369999999986598785688
Q gi|254781011|r  128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI  160 (228)
Q Consensus       128 ~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~  160 (228)
                      +|-|+-...-+++-..+.-+.|++.|.+|..++
T Consensus       154 ~vNlig~~~~~~~d~~ei~~ll~~~Gi~v~~~~  186 (399)
T cd00316         154 SVNLIGGYNLGGGDLRELKRLLEEMGIRVNALF  186 (399)
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf             399995778982009999999998699058976


No 101
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=54.70  E-value=18  Score=17.40  Aligned_cols=32  Identities=19%  Similarity=0.347  Sum_probs=13.6

Q ss_pred             CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             37334144087887322369999999986598785
Q gi|254781011|r  123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ  157 (228)
Q Consensus       123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~  157 (228)
                      +.+|+++|+.+|+-  |+| ....+.+.+.|.+|.
T Consensus        89 l~~Gd~il~~~~~Y--g~t-~~l~~~l~~~Gi~v~  120 (384)
T PRK08574         89 LKAGDEVVLPMEAY--GTT-LRLLKSLEKFGVRVR  120 (384)
T ss_pred             CCCCCEEEECCCCC--HHH-HHHHHHHHHHCCEEE
T ss_conf             68999899848971--459-999999986085799


No 102
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702    This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=54.67  E-value=18  Score=17.39  Aligned_cols=90  Identities=13%  Similarity=0.117  Sum_probs=62.4

Q ss_pred             CCEEEECCCCCCEEEECCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCCCEEE--EECCCHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             98673118726401426213579899999999-9999866421756667899--82231257889998515871787631
Q gi|254781011|r   32 NPYHLTSGIVSPLYIDCRKLISFVRARSMIMD-LTAKTVLRNIGFESIDIIA--GGETAGIPFATLLAERLNLPMIYVRK  108 (228)
Q Consensus        32 g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~-~~~~~i~~~~~~~~~d~I~--G~a~~Gip~a~~iA~~l~~p~~~vRK  108 (228)
                      .=|+++||..+|=          |-  .+|.. .|.++|..-.  .-||+|+  .||.+-+.=|+.+|...+--.+.++-
T Consensus        98 nL~vi~sG~vPPN----------Pt--~LL~s~~F~~l~e~~~--~~fD~iiiDTPPig~V~DAai~a~~~d~~~LV~~A  163 (207)
T TIGR01007        98 NLDVITSGPVPPN----------PT--ELLQSSNFKTLIETLR--KYFDYIIIDTPPIGTVIDAAIIARAVDASILVTDA  163 (207)
T ss_pred             CCEEECCCCCCCC----------HH--HHHHHHHHHHHHHHHH--CCCCEEEEEECCCCHHHHHHHHHHHHCCEEEEEEC
T ss_conf             8727517887877----------54--7888899999999987--16888999518866678899999872977988722


Q ss_pred             CCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             5642011001331037334144087887322369999999986598785688887
Q gi|254781011|r  109 KSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus       109 ~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii  163 (228)
                      +            +..+.              .+..|.+.|++.|.++-|+  |+
T Consensus       164 ~------------~~~k~--------------~v~KAK~~LEq~G~~~LGv--vL  190 (207)
T TIGR01007       164 G------------KIKKR--------------EVKKAKEQLEQAGSKFLGV--VL  190 (207)
T ss_pred             C------------CCCHH--------------HHHHHHHHHHHHCCCEEEE--EE
T ss_conf             5------------32646--------------7899999998617841158--88


No 103
>KOG0425 consensus
Probab=52.44  E-value=18  Score=17.51  Aligned_cols=63  Identities=14%  Similarity=0.105  Sum_probs=42.4

Q ss_pred             EEEEECCC-CHHHHHHHHHCCCEEEEECCHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88874176-32489999977980999632999-99999988899989999999999729977886
Q gi|254781011|r  160 IGLFFYDI-FPEVPARFRENNIKLHYLATWND-ILTIAEKLKIFNHDVLEEVRCFLDNPMQWSKK  222 (228)
Q Consensus       160 ~vii~~~~-~~~~~~~l~~~gi~~~sl~t~~~-il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~~  222 (228)
                      +.|+.-.. .+.+-+..++.=.++|++-|+-- |+..|-+-+..|....+.-+.||+||.++.++
T Consensus        91 ISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~Eykkk  155 (171)
T KOG0425          91 ISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKK  155 (171)
T ss_pred             EEEECCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHH
T ss_conf             99615898886667773430577644467688899887189988862447999976688999999


No 104
>TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch.
Probab=52.41  E-value=13  Score=18.32  Aligned_cols=65  Identities=25%  Similarity=0.303  Sum_probs=36.5

Q ss_pred             HHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH
Q ss_conf             99999998659768207898673118726401426213579899999999999986642175666789982231257889
Q gi|254781011|r   14 ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFAT   93 (228)
Q Consensus        14 ~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~   93 (228)
                      -+-|.-+++.|.+-    |   |-||=..-|+                ++.+.+.+++-   ...|.|.|++|+=  -.+
T Consensus         6 ~~~A~~~V~~Gm~~----G---lGTGST~~~~----------------i~~LG~~v~~G---e~l~~i~gVpTS~--~t~   57 (236)
T TIGR00021         6 AEAAAELVEDGMVV----G---LGTGSTVAYF----------------IEALGERVKQG---EGLDNIVGVPTSK--QTA   57 (236)
T ss_pred             HHHHHHHHCCCCEE----E---ECCHHHHHHH----------------HHHHHHHHHCC---CCCCCCEEEECHH--HHH
T ss_conf             99999860089789----8---2450468999----------------99999874367---7556435884838--999


Q ss_pred             HHHHHCCCCEEEE
Q ss_conf             9985158717876
Q gi|254781011|r   94 LLAERLNLPMIYV  106 (228)
Q Consensus        94 ~iA~~l~~p~~~v  106 (228)
                      ..|..+++|+.=.
T Consensus        58 ~lA~~~GIpl~~l   70 (236)
T TIGR00021        58 ELARELGIPLSSL   70 (236)
T ss_pred             HHHHHCCCEEECC
T ss_conf             9999829804022


No 105
>KOG3111 consensus
Probab=52.09  E-value=20  Score=17.13  Aligned_cols=137  Identities=12%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHCCCEEE--EC-CCCEE--E-------ECCCCC---CEEEECCCCCCCHHHHHH-HHH----------
Q ss_conf             8999999999986597682--07-89867--3-------118726---401426213579899999-999----------
Q gi|254781011|r   10 NIIAELVAKMLFEIKAVNF--SP-ENPYH--L-------TSGIVS---PLYIDCRKLISFVRARSM-IMD----------   63 (228)
Q Consensus        10 ~~~~~~~a~~L~~~~ai~~--~~-~g~F~--L-------~SG~~S---p~Y~d~r~~~s~P~~~~~-i~~----------   63 (228)
                      -+++++.-+ +++.||=-+  .. +|+|.  +       .|=|++   |.||||..+.+.|+.+-. +++          
T Consensus        17 anL~~E~~~-~~~~GadwlHlDVMDg~FVpNiT~G~pvV~slr~~~~~~~ffD~HmMV~~Peq~v~~~a~agas~~tfH~   95 (224)
T KOG3111          17 ANLAAECKK-MLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHY   95 (224)
T ss_pred             HHHHHHHHH-HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEEEE
T ss_conf             789999999-9974987587860147104774336188999985258885236787646988876799864775699986


Q ss_pred             -------HHHHHHHHHCCCCCCCEEEEECCC-HHHHHHH--HHHHCCCCEEEEECCCCCCHHHHHHHHCCC-------CC
Q ss_conf             -------999986642175666789982231-2578899--985158717876315642011001331037-------33
Q gi|254781011|r   64 -------LTAKTVLRNIGFESIDIIAGGETA-GIPFATL--LAERLNLPMIYVRKKSKKHGQKSQIEGHLF-------KG  126 (228)
Q Consensus        64 -------~~~~~i~~~~~~~~~d~I~G~a~~-Gip~a~~--iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~-------~g  126 (228)
                             .+++.|++      -.+.+|++.+ |.|.-.+  .+..++.-+++-  =.-++|-.+..|.-++       +.
T Consensus        96 E~~q~~~~lv~~ir~------~gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMt--VePGFGGQkFme~mm~KV~~lR~ky  167 (224)
T KOG3111          96 EATQKPAELVEKIRE------KGMKVGLALKPGTPVEDLEPLAEHVDMVLVMT--VEPGFGGQKFMEDMMPKVEWLREKY  167 (224)
T ss_pred             EECCCHHHHHHHHHH------CCCEEEEEECCCCCHHHHHHHHHHCCEEEEEE--ECCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             432578999999997------49756687489995899997641025799998--5489750457899989999999868


Q ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             414408788732236999999998659878568
Q gi|254781011|r  127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG  159 (228)
Q Consensus       127 ~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~  159 (228)
                      -+.-|    =-.||--.+.|...-++||++.-.
T Consensus       168 p~l~i----eVDGGv~p~ti~~~a~AGAN~iVa  196 (224)
T KOG3111         168 PNLDI----EVDGGVGPSTIDKAAEAGANMIVA  196 (224)
T ss_pred             CCCEE----EECCCCCCCHHHHHHHCCCCEEEE
T ss_conf             98438----854886821377998758887986


No 106
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=49.41  E-value=22  Score=16.86  Aligned_cols=42  Identities=17%  Similarity=0.238  Sum_probs=26.7

Q ss_pred             HHCCCCCCCE-------EEHHHHHHH-----HHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf             3103733414-------408788732-----23699999999865987856888874
Q gi|254781011|r  120 EGHLFKGARV-------LVIEDLVTL-----GNSMFEFVKVIRDSGGIIQDGIGLFF  164 (228)
Q Consensus       120 EG~~~~g~~v-------liVDDviTt-----G~S~~~~i~~l~~~g~~V~~~~vii~  164 (228)
                      -|.+.+++.+       .+..|++-+     |.++..+++.|.+.|.   |+++.+.
T Consensus       241 kGdi~~~~~vLVRVHs~~~t~Dvlgs~~~d~g~qL~~Al~~I~~eG~---GVlVyLr  294 (400)
T PRK09311        241 KGDISPGEEVLVRVHSECLTGDVLGSRRCDCGWQLDAAMAAIAEEGR---GVVVYLR  294 (400)
T ss_pred             ECCCCCCCCEEEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHCCC---EEEEEEC
T ss_conf             47867889627999733653344338899973479999999987398---6999946


No 107
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=49.34  E-value=22  Score=16.85  Aligned_cols=63  Identities=6%  Similarity=-0.077  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC-C----CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf             8732236999999998659878568888741-7----6324899999779809996329999999998889
Q gi|254781011|r  135 LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY-D----IFPEVPARFRENNIKLHYLATWNDILTIAEKLKI  200 (228)
Q Consensus       135 viTtG~S~~~~i~~l~~~g~~V~~~~vii~~-~----~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~  200 (228)
                      |+.--|-...++++.+-+|...++++|=+-- |    |.+...+--+++|++   +++++||++|.++++.
T Consensus       152 vl~R~GHTEasVdLa~LAGl~P~~vicEil~~dG~mar~~~l~~fA~~h~L~---~isI~dLi~Yr~~~~~  219 (230)
T PRK00014        152 VLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLV---ALAIDELAAHLQARGA  219 (230)
T ss_pred             EEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCC---EEEHHHHHHHHHHHCC
T ss_conf             8134770699999999829996089999856998754679999999981997---8989999999998467


No 108
>TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361   This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.   This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process.
Probab=48.34  E-value=21  Score=17.07  Aligned_cols=127  Identities=20%  Similarity=0.232  Sum_probs=67.6

Q ss_pred             HHHHHHH-CCCEEEECCCCEEEEC----CCCCCEEEECCC-CCCCHHHHHHHHHHHHHHHHHHCCC---CCCCE--EE--
Q ss_conf             9999986-5976820789867311----872640142621-3579899999999999986642175---66678--99--
Q gi|254781011|r   16 VAKMLFE-IKAVNFSPENPYHLTS----GIVSPLYIDCRK-LISFVRARSMIMDLTAKTVLRNIGF---ESIDI--IA--   82 (228)
Q Consensus        16 ~a~~L~~-~~ai~~~~~g~F~L~S----G~~Sp~Y~d~r~-~~s~P~~~~~i~~~~~~~i~~~~~~---~~~d~--I~--   82 (228)
                      +.+.|-+ --++-=....||||+|    |.-|.-|-..|+ +-++|+.++.+.+.+.+.+.+....   .++|+  |+  
T Consensus       124 ~r~~L~~~~vpLIGFaGaPwTLasYmIEGggSk~~~~~K~f~y~~P~~~~aLl~~Lt~~~~~YL~~Qv~AGA~avQiFDS  203 (351)
T TIGR01464       124 LREELDGVEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKFMYEEPEALHALLNKLTDATIEYLSEQVKAGAQAVQIFDS  203 (351)
T ss_pred             HHHHHCCCCCCEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             99983778864463068605534301027898677999998720858999999999999999999988618848999633


Q ss_pred             -EECCCH-------HHHHH----HHHHHC------CCCEEEEECCCCCCHHHHHHHHCCCCC-CCEEEHHHHHHHHHHHH
Q ss_conf             -822312-------57889----998515------871787631564201100133103733-41440878873223699
Q gi|254781011|r   83 -GGETAG-------IPFAT----LLAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKG-ARVLVIEDLVTLGNSMF  143 (228)
Q Consensus        83 -G~a~~G-------ip~a~----~iA~~l------~~p~~~vRK~~K~hG~~~~iEG~~~~g-~~vliVDDviTtG~S~~  143 (228)
                       +.+...       +|...    .+-.++      ++|+++-=|     |.+.++|.....| --|+=+|=-+    ++.
T Consensus       204 Wag~Ls~~df~~fv~py~~~I~~~vk~~~~e~~~~~~P~I~F~~-----G~g~~l~~~~~~g~~DvvglDW~v----~~~  274 (351)
T TIGR01464       204 WAGALSPEDFEEFVLPYLAKIIEEVKKRLPEFVLENVPVILFAK-----GAGHLLEELAETGPADVVGLDWSV----DLK  274 (351)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC-----CHHHHHHHHHHCCCCCEEEECCCC----CHH
T ss_conf             46447987888850889999999998762125789886688528-----778999999706992088605888----989


Q ss_pred             HHHHHHHH
Q ss_conf             99999986
Q gi|254781011|r  144 EFVKVIRD  151 (228)
Q Consensus       144 ~~i~~l~~  151 (228)
                      ++.+.+.+
T Consensus       275 ~a~~~~~~  282 (351)
T TIGR01464       275 EARKRVGD  282 (351)
T ss_pred             HHHHHHCC
T ss_conf             99997179


No 109
>PRK04042 rpl4lp 50S ribosomal protein L4P; Provisional
Probab=47.54  E-value=24  Score=16.67  Aligned_cols=25  Identities=20%  Similarity=0.131  Sum_probs=17.0

Q ss_pred             EEHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             4087887322369999999986598
Q gi|254781011|r  130 LVIEDLVTLGNSMFEFVKVIRDSGG  154 (228)
Q Consensus       130 liVDDviTtG~S~~~~i~~l~~~g~  154 (228)
                      +||+|-+.+=.-.-++++.|++.|+
T Consensus       141 iVv~d~ie~i~KTK~~~~~L~~lgl  165 (254)
T PRK04042        141 LVVVDDFESIKKTKEVRELLKALGL  165 (254)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             6872332013769999999998486


No 110
>TIGR03672 rpl4p_arch 50S ribosomal protein L4P. One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
Probab=46.79  E-value=24  Score=16.60  Aligned_cols=58  Identities=10%  Similarity=0.003  Sum_probs=32.8

Q ss_pred             EEHHHHHHHHHHHHHHHHHHHHCCC--------------------------EEEEEEEEEECCCCHHHHHHHHH-CCCEE
Q ss_conf             4087887322369999999986598--------------------------78568888741763248999997-79809
Q gi|254781011|r  130 LVIEDLVTLGNSMFEFVKVIRDSGG--------------------------IIQDGIGLFFYDIFPEVPARFRE-NNIKL  182 (228)
Q Consensus       130 liVDDviTtG~S~~~~i~~l~~~g~--------------------------~V~~~~vii~~~~~~~~~~~l~~-~gi~~  182 (228)
                      +||+|-+.+=...-++++.|+..|+                          .-.+.++++..  .+.....+.+ -||++
T Consensus       140 iVv~d~~e~~~KTKe~~~~L~~lgl~~di~r~~~~k~iraGkgkmRgRry~~~k~~LiV~~~--~~~~~ka~RNIpGVdv  217 (251)
T TIGR03672       140 IVVVDDFESLKKTKEVRELLEALGVYDDIERAKEGKKIRAGKGKMRGRRYKEPKSVLIVVGD--DSGISKAARNLPGVDV  217 (251)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCEEECCCEEEEEECC--CCHHHHHHHCCCCCEE
T ss_conf             89824433205289999999985862778988634501157764257300035415999748--7128888607999769


Q ss_pred             EEECCHH
Q ss_conf             9963299
Q gi|254781011|r  183 HYLATWN  189 (228)
Q Consensus       183 ~sl~t~~  189 (228)
                      .++-.++
T Consensus       218 ~~v~~LN  224 (251)
T TIGR03672       218 VTVNNLN  224 (251)
T ss_pred             EECCCCC
T ss_conf             8548776


No 111
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=45.73  E-value=25  Score=16.50  Aligned_cols=27  Identities=22%  Similarity=0.441  Sum_probs=12.8

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             667899822312578899985158717876315
Q gi|254781011|r   77 SIDIIAGGETAGIPFATLLAERLNLPMIYVRKK  109 (228)
Q Consensus        77 ~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~  109 (228)
                      +|..+   |++|-  |..+ ...|+|.-.+.|-
T Consensus        25 Gf~i~---AT~GT--a~~L-~~~Gi~~~~V~Ki   51 (112)
T cd00532          25 GFPLF---ATGGT--SRVL-ADAGIPVRAVSKR   51 (112)
T ss_pred             CCEEE---ECHHH--HHHH-HHCCCEEEEEEEC
T ss_conf             99999---88689--9999-9879834898504


No 112
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=45.15  E-value=15  Score=17.92  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             1037334144087887322369999999986598785
Q gi|254781011|r  121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ  157 (228)
Q Consensus       121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~  157 (228)
                      +.+.+|++++-|++.-.+|-|..+++++|++++-.+.
T Consensus        42 ~~L~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~v~   78 (82)
T cd00992          42 GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVT   78 (82)
T ss_pred             CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf             4899999989899999999989999999984999599


No 113
>PRK07671 cystathionine beta-lyase; Provisional
Probab=44.16  E-value=18  Score=17.49  Aligned_cols=14  Identities=7%  Similarity=0.195  Sum_probs=6.1

Q ss_pred             CCCCCCCEEEHHHH
Q ss_conf             03733414408788
Q gi|254781011|r  122 HLFKGARVLVIEDL  135 (228)
Q Consensus       122 ~~~~g~~vliVDDv  135 (228)
                      .+.++.+++.+|-.
T Consensus       130 ai~~~Tklv~~Esp  143 (377)
T PRK07671        130 AIRPNTKAIYVETP  143 (377)
T ss_pred             HCCCCCEEEEEECC
T ss_conf             47888449999789


No 114
>pfam11382 DUF3186 Protein of unknown function (DUF3186). This bacterial family of proteins has no known function.
Probab=43.40  E-value=27  Score=16.27  Aligned_cols=18  Identities=17%  Similarity=0.313  Sum_probs=7.3

Q ss_pred             HHHHHHCCCEEEEEEEEE
Q ss_conf             999986598785688887
Q gi|254781011|r  146 VKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus       146 i~~l~~~g~~V~~~~vii  163 (228)
                      .+.|+.+|+.|.+.+.+-
T Consensus       103 ~~~l~~AGa~V~g~i~lt  120 (307)
T pfam11382       103 SEALTQAGATVVGRITLT  120 (307)
T ss_pred             HHHHHHCCCEEEEEEEEE
T ss_conf             999998699146889950


No 115
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=43.31  E-value=17  Score=17.68  Aligned_cols=15  Identities=13%  Similarity=0.222  Sum_probs=6.7

Q ss_pred             HCCCCCCCEEEHHHH
Q ss_conf             103733414408788
Q gi|254781011|r  121 GHLFKGARVLVIEDL  135 (228)
Q Consensus       121 G~~~~g~~vliVDDv  135 (228)
                      ..+.++.+++.+|-.
T Consensus       145 ~ai~~~Tklv~~Esp  159 (397)
T PRK07504        145 KAVRPNTKVFFLESP  159 (397)
T ss_pred             HHCCCCCEEEEEECC
T ss_conf             745877539998548


No 116
>PRK13435 response regulator; Provisional
Probab=43.03  E-value=23  Score=16.70  Aligned_cols=19  Identities=21%  Similarity=0.370  Sum_probs=6.5

Q ss_pred             HHHHHHHHHHHCCCCEEEE
Q ss_conf             2578899985158717876
Q gi|254781011|r   88 GIPFATLLAERLNLPMIYV  106 (228)
Q Consensus        88 Gip~a~~iA~~l~~p~~~v  106 (228)
                      |+-++..+....++|.+|.
T Consensus        62 G~e~~r~l~~~~~ipvI~l   80 (141)
T PRK13435         62 GVEVARRLSIDGGVEVIFM   80 (141)
T ss_pred             HHHHHHHHHHCCCCCEEEE
T ss_conf             9999999987599838999


No 117
>pfam02233 PNTB NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyses the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.
Probab=43.03  E-value=28  Score=16.23  Aligned_cols=68  Identities=12%  Similarity=0.230  Sum_probs=50.0

Q ss_pred             CCCCCEEEHH----HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH-HHHCCCEEEEECCHHHHH
Q ss_conf             7334144087----88732236999999998659878568888741763248999-997798099963299999
Q gi|254781011|r  124 FKGARVLVIE----DLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR-FRENNIKLHYLATWNDIL  192 (228)
Q Consensus       124 ~~g~~vliVD----DviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~-l~~~gi~~~sl~t~~~il  192 (228)
                      ..-++|+||-    -|.-.=..+.|..+.|++.|.+|.-.+-=+- +|.++-... |.+.+|++--+..++|+=
T Consensus       306 ~~A~~ViIVPGYGmAvAqAQ~~v~el~~~L~~~g~~V~faIHPVA-GRMPGHMNVLLAEA~VpYd~~~emdeiN  378 (464)
T pfam02233       306 LNASSVIIVPGYGMAVAQAQHPVADLAKLLEERGVNVRFAIHPVA-GRMPGHMNVLLAEANVPYDIVLEMDEIN  378 (464)
T ss_pred             HCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCCCHHHHHHHCCCCHHHHCCHHHHC
T ss_conf             719939997780899998789999999999978986999857668-8887305552231589867754976534


No 118
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=42.84  E-value=26  Score=16.38  Aligned_cols=12  Identities=17%  Similarity=0.337  Sum_probs=5.8

Q ss_pred             CCCCCCCEEEHH
Q ss_conf             037334144087
Q gi|254781011|r  122 HLFKGARVLVIE  133 (228)
Q Consensus       122 ~~~~g~~vliVD  133 (228)
                      .+.++.+++.+|
T Consensus       144 ~i~~~T~lv~~E  155 (426)
T PRK05994        144 AITPRTKAIFIE  155 (426)
T ss_pred             HCCCCCEEEEEE
T ss_conf             368875499998


No 119
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=42.57  E-value=28  Score=16.18  Aligned_cols=10  Identities=20%  Similarity=0.119  Sum_probs=4.4

Q ss_pred             CCCEEEEECC
Q ss_conf             6678998223
Q gi|254781011|r   77 SIDIIAGGET   86 (228)
Q Consensus        77 ~~d~I~G~a~   86 (228)
                      ++|.|+-..+
T Consensus        79 ~~Dliv~~g~   88 (181)
T pfam00551        79 APDLIVLAGY   88 (181)
T ss_pred             CCCEEEEECH
T ss_conf             9999998016


No 120
>pfam01343 Peptidase_S49 Peptidase family S49.
Probab=41.59  E-value=29  Score=16.09  Aligned_cols=14  Identities=21%  Similarity=0.257  Sum_probs=7.3

Q ss_pred             EECCHHHHHHHHHH
Q ss_conf             96329999999998
Q gi|254781011|r  184 YLATWNDILTIAEK  197 (228)
Q Consensus       184 sl~t~~~il~~l~~  197 (228)
                      .|-+++|.++.+.+
T Consensus       136 ~ig~~deai~~l~~  149 (154)
T pfam01343       136 ELGTLDDAIARLAE  149 (154)
T ss_pred             CCCCHHHHHHHHHH
T ss_conf             37999999999999


No 121
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=41.40  E-value=19  Score=17.28  Aligned_cols=39  Identities=18%  Similarity=0.235  Sum_probs=18.1

Q ss_pred             CCCEEEEC----CCCCCEEEECCC-CCCCHHHHHHHHHHHHHHH
Q ss_conf             89867311----872640142621-3579899999999999986
Q gi|254781011|r   31 ENPYHLTS----GIVSPLYIDCRK-LISFVRARSMIMDLTAKTV   69 (228)
Q Consensus        31 ~g~F~L~S----G~~Sp~Y~d~r~-~~s~P~~~~~i~~~~~~~i   69 (228)
                      .+||||.|    |.-|.-|...|. +..+|+....+.+.+.+.+
T Consensus       146 GaPwTLasYmieG~~sk~~~~~k~~~~~~p~~~~~ll~~lt~~~  189 (347)
T PRK00115        146 GSPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADAT  189 (347)
T ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             76599999998488984679999987519999999999999999


No 122
>pfam04189 Gcd10p Gcd10p family. eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA.
Probab=41.23  E-value=29  Score=16.05  Aligned_cols=52  Identities=19%  Similarity=0.263  Sum_probs=32.7

Q ss_pred             HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCC
Q ss_conf             10373341440878873223699999999865987856888874176324899999779
Q gi|254781011|r  121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENN  179 (228)
Q Consensus       121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~g  179 (228)
                      +.+..|.|+|++|+   |||=+..|+  ++..|+.  |.++.+..+..+-....+.-.|
T Consensus       198 anV~~~g~~lv~d~---~~GLv~~A~--~eRmgg~--G~i~~~~~~~~~pnl~~l~~~n  249 (300)
T pfam04189       198 ANVRAGGRYLVVDE---TGGLLVAAM--LERMGGE--GKIVQIHEGEHPPNLDLLKYFN  249 (300)
T ss_pred             CCCCCCCEEEEEEC---CCCHHHHHH--HHHCCCC--CEEEEECCCCCCCCHHHHHHCC
T ss_conf             17798986999968---889799999--9973798--3499975798894378998659


No 123
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=40.30  E-value=22  Score=16.87  Aligned_cols=15  Identities=7%  Similarity=-0.062  Sum_probs=7.7

Q ss_pred             HHHHHHCCCEEEEEC
Q ss_conf             999997798099963
Q gi|254781011|r  172 PARFRENNIKLHYLA  186 (228)
Q Consensus       172 ~~~l~~~gi~~~sl~  186 (228)
                      -+.+.+.|+...|+=
T Consensus       244 l~~~~~~~~d~isiD  258 (335)
T cd00717         244 LEDLAQLGADVVGLD  258 (335)
T ss_pred             HHHHHHCCCCEEECC
T ss_conf             999986398777427


No 124
>pfam02477 Nairo_nucleo Nucleocapsid N protein. The nucleoprotein of the ssRNA negative-strand Nairovirus is an internal part of the virus particle.
Probab=40.29  E-value=24  Score=16.68  Aligned_cols=65  Identities=12%  Similarity=0.241  Sum_probs=46.8

Q ss_pred             HHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998659878568888741763248999997798099963299999999988899989999999999729977886
Q gi|254781011|r  146 VKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSKK  222 (228)
Q Consensus       146 i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~~  222 (228)
                      -.++|.+|+++..++.-.         --+=+.||.-.   |+..+-++|.+.|.-+.-.+.+++.-.+.|..|+++
T Consensus       295 S~AlRAQGAQIDt~FSsy---------YW~wkAGvtpe---tFptvSQFLFElGk~prG~KKM~KAL~stPlkWGK~  359 (442)
T pfam02477       295 SNALRAQGAQIDTPFSSY---------YWAWKAGVTPE---TFPTVSQFLFELGKSPRGGKKMIKALTSTPLKWGKG  359 (442)
T ss_pred             HHHHHHCCCCCCCCHHHH---------HHHHHCCCCCC---CCCCHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf             058774457437741776---------76775188852---220199999984668873088999985286667688


No 125
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=39.76  E-value=28  Score=16.18  Aligned_cols=27  Identities=26%  Similarity=0.187  Sum_probs=16.4

Q ss_pred             CEEEEECCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             78998223125788999851587178763
Q gi|254781011|r   79 DIIAGGETAGIPFATLLAERLNLPMIYVR  107 (228)
Q Consensus        79 d~I~G~a~~Gip~a~~iA~~l~~p~~~vR  107 (228)
                      ..+.|++++=  -.+.++.++++|+....
T Consensus        47 ~~i~~V~TS~--~t~~l~~~~GI~v~~l~   73 (227)
T COG0120          47 LDIGGVPTSF--QTEELARELGIPVSSLN   73 (227)
T ss_pred             CCEEEEECCH--HHHHHHHHCCCEECCCC
T ss_conf             6379996979--99999998297643733


No 126
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=39.45  E-value=31  Score=15.87  Aligned_cols=73  Identities=12%  Similarity=0.170  Sum_probs=43.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCEEEECCCCEE-EECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             989789999999999865976820789867-3118726401426213579899999999999986642175666789982
Q gi|254781011|r    6 FPQQNIIAELVAKMLFEIKAVNFSPENPYH-LTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGG   84 (228)
Q Consensus         6 ~~~~~~~~~~~a~~L~~~~ai~~~~~g~F~-L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~   84 (228)
                      +++.++|++..|+..++.     -.+|--. |-||....|                .++.+++.+++.    ..+ |.++
T Consensus         1 m~~~~~lK~~aa~~A~~~-----V~~gmviGLGTGSTv~~----------------~I~~L~~~~k~~----~l~-i~~V   54 (228)
T PRK13978          1 MKDVKALKLMTLNDVLSQ-----INGDMTLGIGTGSTMEL----------------LLPQMAQLIKER----GYN-ITGV   54 (228)
T ss_pred             CCCHHHHHHHHHHHHHHH-----CCCCCEEEECCHHHHHH----------------HHHHHHHHHHCC----CCC-EEEE
T ss_conf             986899999999999965-----89999998555799999----------------999999998607----984-8999


Q ss_pred             CCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             2312578899985158717876
Q gi|254781011|r   85 ETAGIPFATLLAERLNLPMIYV  106 (228)
Q Consensus        85 a~~Gip~a~~iA~~l~~p~~~v  106 (228)
                      +++-  -....|.++++|+.-.
T Consensus        55 ~tS~--~T~~~a~~~Gi~l~~l   74 (228)
T PRK13978         55 CTSN--KIAFLAKELGIKICEI   74 (228)
T ss_pred             ECCH--HHHHHHHHCCCEEECC
T ss_conf             7999--9999999879807645


No 127
>PRK07206 hypothetical protein; Provisional
Probab=38.42  E-value=32  Score=15.77  Aligned_cols=27  Identities=37%  Similarity=0.535  Sum_probs=22.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCCE
Q ss_conf             667899822312578899985158717
Q gi|254781011|r   77 SIDIIAGGETAGIPFATLLAERLNLPM  103 (228)
Q Consensus        77 ~~d~I~G~a~~Gip~a~~iA~~l~~p~  103 (228)
                      +++.|.-..-.|+++|..+|..|++|+
T Consensus        70 ~~~aVi~g~E~gV~lAd~La~~LgLp~   96 (415)
T PRK07206         70 GPDAVIAGAESGVELADRLAERLGLCY   96 (415)
T ss_pred             CCCEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf             972999785565999999999868998


No 128
>PRK00830 consensus
Probab=38.13  E-value=30  Score=16.04  Aligned_cols=77  Identities=17%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHH-----HHHH-HHCCCEEEE---ECCHHHHHHHHHHCC---------
Q ss_conf             2236999999998659878568888741763248-----9999-977980999---632999999999888---------
Q gi|254781011|r  138 LGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEV-----PARF-RENNIKLHY---LATWNDILTIAEKLK---------  199 (228)
Q Consensus       138 tG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~-----~~~l-~~~gi~~~s---l~t~~~il~~l~~~~---------  199 (228)
                      |+-+..+.++.+++.|+.-. ++.=+++|....|     -+.+ +..++|+..   +-+++|+.+.+...+         
T Consensus       171 t~~~~~~~~~~~~~~G~gei-l~tdI~rDGt~~G~d~~l~~~i~~~~~iPvIasGGv~~~~di~~~~~~~~~~~v~~gs~  249 (273)
T PRK00830        171 TGIDAVQWAKKVEELGAGEI-LLTSMDRDGTKDGYDIPITKKISEEVDIPVIASGGVGNPEHIYEGFSDGKADAALAASI  249 (273)
T ss_pred             CCCCHHHHHHHHHHCCCCEE-EEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHH
T ss_conf             78679999999986498868-88787577965688969999998637998899889999999999998389868877005


Q ss_pred             -CCCHHHHHHHHHHHHH
Q ss_conf             -9998999999999972
Q gi|254781011|r  200 -IFNHDVLEEVRCFLDN  215 (228)
Q Consensus       200 -~I~~~~~~~I~~~l~d  215 (228)
                       +..+.....+++|+++
T Consensus       250 f~~~~~si~e~k~~L~~  266 (273)
T PRK00830        250 FHFNEYSIREVKEYLRE  266 (273)
T ss_pred             HHCCCCCHHHHHHHHHH
T ss_conf             66699799999999998


No 129
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=37.30  E-value=34  Score=15.68  Aligned_cols=47  Identities=9%  Similarity=0.017  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEEEECCCCHH---HHHHHHHCCCEEEEECC
Q ss_conf             3699999999865987856888874176324---89999977980999632
Q gi|254781011|r  140 NSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE---VPARFRENNIKLHYLAT  187 (228)
Q Consensus       140 ~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~---~~~~l~~~gi~~~sl~t  187 (228)
                      ..+.++++.|++.|.+.....|+.+.. .+.   --.-|++.|..+.....
T Consensus       153 ~~v~~~i~lL~~~~v~fn~L~vv~~~n-~~~p~~iY~f~k~lg~~~lQFiP  202 (412)
T PRK13745        153 VKVMKGINLLKKHGVEWNAMAVVNDFN-ADYPLDFYNFFKELDCHYIQFAP  202 (412)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEECHH-HHCHHHHHHHHHHCCCCEEEEEC
T ss_conf             999999999998499646999981115-45889999999975996687631


No 130
>TIGR03161 ribazole_CobZ alpha-ribazole phosphatase CobZ. Sequences in the seed alignment were the experimentally characterized CobZ of the methanogenic archaeon Methanosarcina mazei, and other archaeal proteins found similarly next to or very near to other cobalamin biosynthesis genes. CobZ replaces the alpha-ribazole-phosphate phosphatase (EC 3.1.3.73) called CobC in analogous bacterial pathways for cobalamin biosynthesis under anaerobic conditions.
Probab=37.24  E-value=34  Score=15.65  Aligned_cols=15  Identities=0%  Similarity=0.155  Sum_probs=9.2

Q ss_pred             CCCCCHHHHHHHHHH
Q ss_conf             135798999999999
Q gi|254781011|r   50 KLISFVRARSMIMDL   64 (228)
Q Consensus        50 ~~~s~P~~~~~i~~~   64 (228)
                      +.+++|....++.-+
T Consensus        42 ~~L~dpNV~aLl~aA   56 (140)
T TIGR03161        42 RYLEDPNVAALLIAA   56 (140)
T ss_pred             HHHCCHHHHHHHHHH
T ss_conf             984583199999999


No 131
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=36.79  E-value=34  Score=15.61  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=25.7

Q ss_pred             CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             037334144087887322369999999986598785
Q gi|254781011|r  122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ  157 (228)
Q Consensus       122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~  157 (228)
                      .+++++.+++   +..+|++...++..|++.|.+|.
T Consensus        57 ~lp~d~~ivv---~C~~G~rS~~aa~~L~~~G~~v~   89 (100)
T cd01523          57 QLPDDQEVTV---ICAKEGSSQFVAELLAERGYDVD   89 (100)
T ss_pred             HCCCCCEEEE---EECCCHHHHHHHHHHHHCCCEEE
T ss_conf             4789983999---92896569999999998798379


No 132
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=36.78  E-value=34  Score=15.61  Aligned_cols=86  Identities=8%  Similarity=0.013  Sum_probs=53.7

Q ss_pred             EEEHHHHHHHHHHHHHH-HHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCCHHH
Q ss_conf             44087887322369999-9999865987856888874176324899999779809996329--99999999888999899
Q gi|254781011|r  129 VLVIEDLVTLGNSMFEF-VKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATW--NDILTIAEKLKIFNHDV  205 (228)
Q Consensus       129 vliVDDviTtG~S~~~~-i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~--~~il~~l~~~~~I~~~~  205 (228)
                      |..++|+.++|+=.+.+ .+.+--.....++.+.++.  .+....+.+++.||+...+.+-  .+..+-.   .-.++++
T Consensus        77 va~~~~~~aSggY~iAsaad~I~a~~~s~vGSIGv~~--~~~~~~~ll~k~Gi~~~~~~sg~~K~~~~p~---~~~s~e~  151 (214)
T cd07022          77 VAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVA--SHVDQSKALEKAGLKVTLIFAGAHKVDGNPD---EPLSDEA  151 (214)
T ss_pred             EEEECCCHHHHHHHHHHHCCCEEECCCCEEEEEEEEE--ECCCHHHHHHHCCCEEEEEECCCCCCCCCCC---CCCCHHH
T ss_conf             9998881156899998725705877764687641488--6177688898679547874057633236875---6568899


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999729977
Q gi|254781011|r  206 LEEVRCFLDNPMQW  219 (228)
Q Consensus       206 ~~~I~~~l~dP~~W  219 (228)
                      .+.+++++++-++|
T Consensus       152 ~~~~q~~ld~~~~~  165 (214)
T cd07022         152 RARLQAEVDALYAM  165 (214)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 133
>KOG3124 consensus
Probab=36.51  E-value=15  Score=17.88  Aligned_cols=79  Identities=18%  Similarity=0.227  Sum_probs=42.1

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHH----CCCCC-CCEEEHHHHHHHHHHHHHHHHH
Q ss_conf             66789982231257889998515---8717876315642011001331----03733-4144087887322369999999
Q gi|254781011|r   77 SIDIIAGGETAGIPFATLLAERL---NLPMIYVRKKSKKHGQKSQIEG----HLFKG-ARVLVIEDLVTLGNSMFEFVKV  148 (228)
Q Consensus        77 ~~d~I~G~a~~Gip~a~~iA~~l---~~p~~~vRK~~K~hG~~~~iEG----~~~~g-~~vliVDDviTtG~S~~~~i~~  148 (228)
                      .+|.+-|+.-.|..++......|   ++-+-+.|..++.-+-..+ .|    -+..| .-..+=|||-|-||+.+.+...
T Consensus       162 ~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtl-lGAakMVl~s~qHP~~Lkd~V~SPgG~TI~glh~  240 (267)
T KOG3124         162 CIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTL-LGAAKMVLASGQHPAQLKDDVCSPGGTTIYGLHA  240 (267)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHH
T ss_conf             626776136774999999999874445003999899999888998-7189899861689188747888999604789999


Q ss_pred             HHHCCCEE
Q ss_conf             98659878
Q gi|254781011|r  149 IRDSGGII  156 (228)
Q Consensus       149 l~~~g~~V  156 (228)
                      |++-|.+.
T Consensus       241 LE~ggfRs  248 (267)
T KOG3124         241 LEKGGFRS  248 (267)
T ss_pred             HHHCCCHH
T ss_conf             87388515


No 134
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=36.42  E-value=35  Score=15.57  Aligned_cols=129  Identities=15%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-ECCCHH
Q ss_conf             9999999999865976820789867311872640142621357989999999999998664217566678998-223125
Q gi|254781011|r   11 IIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAG-GETAGI   89 (228)
Q Consensus        11 ~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G-~a~~Gi   89 (228)
                      ++...+|+.|..-|.-....=.+ .| +..++|+.+     .    -+.+-++-+.+.|.++   ..+ .|+| -..-|+
T Consensus        18 ~i~p~~a~lL~~RGi~~~~~~~~-~l-~~l~~p~~l-----~----dm~~Av~ri~~Ai~~~---ekI-~I~GDYDvDGi   82 (574)
T PRK11070         18 ELPPLLRRLYASRGVRSAQELER-SV-KGLLPWQQL-----S----GIEKAVEILYNAFREG---TRI-IVVGDFDADGA   82 (574)
T ss_pred             CCCHHHHHHHHHCCCCCHHHHHH-HH-HHCCCHHHC-----C----CHHHHHHHHHHHHHCC---CEE-EEEECCCCHHH
T ss_conf             67999999999779999999847-77-747992351-----3----9999999999999879---949-99934786067


Q ss_pred             HHHHHHH---HHCCCC-EEE-E-ECCCCCCHHHH-HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             7889998---515871-787-6-31564201100-1331037334144087887322369999999986598785
Q gi|254781011|r   90 PFATLLA---ERLNLP-MIY-V-RKKSKKHGQKS-QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ  157 (228)
Q Consensus        90 p~a~~iA---~~l~~p-~~~-v-RK~~K~hG~~~-~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~  157 (228)
                      .=.+.+-   ..++.. ..| + -+...+||.+. .++-....|-+.+|   .+-+|.|..+.++.+++.|..|.
T Consensus        83 TstaiL~~~l~~~g~~~v~y~IP~R~~eGYGl~~~~i~~~~~~g~~LiI---TvDcGi~a~e~i~~a~~~GidvI  154 (574)
T PRK11070         83 TSTALSVLALRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV---TVDNGISSHAGVAHAKSLGIPVI  154 (574)
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEE---EECCCHHHHHHHHHHHHCCCCEE
T ss_conf             9999999999986997169979898767879799999999965999999---95785302999999997799999


No 135
>KOG2311 consensus
Probab=36.23  E-value=22  Score=16.88  Aligned_cols=84  Identities=17%  Similarity=0.142  Sum_probs=44.9

Q ss_pred             EEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             44087887322369999999986598785688887417632489999977980999632999999999888999899999
Q gi|254781011|r  129 VLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEE  208 (228)
Q Consensus       129 vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~  208 (228)
                      =++|||++|-|..-  --+.+-.   ...  +-+.  -|.+.|..+|...|.+.+-+.+=.-.-.+-+.+.. -++..+.
T Consensus       437 GvLIDDL~t~g~~E--PYRMfTS---RsE--fRLs--lR~DNAD~RLT~lg~~~~~l~s~~rw~~fq~~k~~-l~~~~~~  506 (679)
T KOG2311         437 GVLIDDLTTLGTNE--PYRMFTS---RSE--FRLS--LRPDNADSRLTPLGYKEGGLVSQQRWERFQETKSR-LDEGIKR  506 (679)
T ss_pred             EEEEHHHHCCCCCC--CHHHHCC---HHH--HEEE--ECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH-HHHHHHH
T ss_conf             77722334158765--0665300---334--1566--24776442146100543486467899999988988-8889999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999729977886
Q gi|254781011|r  209 VRCFLDNPMQWSKK  222 (228)
Q Consensus       209 I~~~l~dP~~W~~~  222 (228)
                      +++|..++..|++-
T Consensus       507 lk~~k~s~~~w~~l  520 (679)
T KOG2311         507 LKEFKLSSQKWKKL  520 (679)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             88862118888763


No 136
>PRK09191 two-component response regulator; Provisional
Probab=35.74  E-value=36  Score=15.50  Aligned_cols=63  Identities=16%  Similarity=0.240  Sum_probs=39.0

Q ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-----------------EEEC---CCCH---HHHHHHHHCCCEEE
Q ss_conf             41440878873223699999999865987856888-----------------8741---7632---48999997798099
Q gi|254781011|r  127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG-----------------LFFY---DIFP---EVPARFRENNIKLH  183 (228)
Q Consensus       127 ~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v-----------------ii~~---~~~~---~~~~~l~~~gi~~~  183 (228)
                      .||+||||=.--.   ...-..|++.|.+|+|++.                 +.|.   |...   .+.+-+++.++++.
T Consensus       138 ~rILIVEDE~lIA---mdLe~~l~~lG~~V~GiA~t~~eAl~la~~~~PDlvL~DI~L~d~~sGIdaa~~I~~~~~iPvI  214 (261)
T PRK09191        138 TSVLIIEDEPIIA---MDLEQLVESLGHRVVGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKTFDVPVI  214 (261)
T ss_pred             CCEEEECCCHHHH---HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             8879985859999---9999999987996787627899999997425989899953479998799999999982899989


Q ss_pred             EECCHHHHH
Q ss_conf             963299999
Q gi|254781011|r  184 YLATWNDIL  192 (228)
Q Consensus       184 sl~t~~~il  192 (228)
                      -++-+.|-+
T Consensus       215 FiTAyperl  223 (261)
T PRK09191        215 FITAFPERL  223 (261)
T ss_pred             EECCCHHHH
T ss_conf             977784653


No 137
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=35.45  E-value=23  Score=16.77  Aligned_cols=37  Identities=8%  Similarity=0.152  Sum_probs=14.7

Q ss_pred             HHHHCCCCCCCEEEHHHHHHHHHH---HHHHHHHHHHCCC
Q ss_conf             133103733414408788732236---9999999986598
Q gi|254781011|r  118 QIEGHLFKGARVLVIEDLVTLGNS---MFEFVKVIRDSGG  154 (228)
Q Consensus       118 ~iEG~~~~g~~vliVDDviTtG~S---~~~~i~~l~~~g~  154 (228)
                      .+|..+.++.++|.+|-...--..   +...+++.++.|+
T Consensus       135 ~~~~~i~~~Tklv~~EsP~NPtl~v~DI~~i~~iA~~~g~  174 (424)
T PRK06084        135 ALEALIDERTKAVFCESIGNPAGNIVDLQALADAAHRHGV  174 (424)
T ss_pred             HHHHHCCCCCEEEEEECCCCCCCEECCHHHHHHHHHHCCC
T ss_conf             9997548765189984389998650378999999987499


No 138
>PRK06518 hypothetical protein; Provisional
Probab=35.07  E-value=19  Score=17.36  Aligned_cols=13  Identities=23%  Similarity=0.792  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             7299778860988
Q gi|254781011|r  214 DNPMQWSKKNGGI  226 (228)
Q Consensus       214 ~dP~~W~~~~g~~  226 (228)
                      ..|+.|+++||+-
T Consensus       174 ~~Pw~wRr~Ng~~  186 (192)
T PRK06518        174 QMPWDWRRDHGSY  186 (192)
T ss_pred             CCHHHHHHHCCCC
T ss_conf             7979999867999


No 139
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277   This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate .    Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=34.96  E-value=37  Score=15.42  Aligned_cols=54  Identities=22%  Similarity=0.322  Sum_probs=38.4

Q ss_pred             CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE-CC-CCHHHHHHHHHCCCEEE
Q ss_conf             373341440878873223699999999865987856888874-17-63248999997798099
Q gi|254781011|r  123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF-YD-IFPEVPARFRENNIKLH  183 (228)
Q Consensus       123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~-~~-~~~~~~~~l~~~gi~~~  183 (228)
                      +.+|+|++|    .|+=-|..+++..|+++|+.|+.   |+| |. ..+...+.-.+.|+++.
T Consensus       328 V~pG~r~v~----~TnNDSAy~~A~dL~~AG~~vvA---i~D~R~~~~p~~~~~Ar~~g~~v~  383 (1026)
T TIGR01372       328 VAPGKRIVV----ATNNDSAYRAAADLAEAGLAVVA---IVDARADVSPELVAEAREAGIEVI  383 (1026)
T ss_pred             CCCCCEEEE----EECCHHHHHHHHHHHHCCCCEEE---EEEECCCCCHHHHHHHHHCCCEEE
T ss_conf             054870589----82173589999999964895069---996178875247999987598598


No 140
>PRK05802 hypothetical protein; Provisional
Probab=34.57  E-value=37  Score=15.38  Aligned_cols=146  Identities=18%  Similarity=0.153  Sum_probs=72.8

Q ss_pred             CCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             98673118726401426213579899999999999986642175666789982231257889998515871787631564
Q gi|254781011|r   32 NPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK  111 (228)
Q Consensus        32 g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K  111 (228)
                      |.|+.-.+..|+.|||.-.-+.+..            ..+     ++ .-+.++..|+--........+- -+++|-. -
T Consensus        99 GSfVFlR~~~~~~yfd~PISIM~~d------------~~~-----~i-i~vaiei~G~KTk~i~~~~~~~-~i~iRGP-y  158 (328)
T PRK05802         99 GSFVFLRNKNSNPFFDVPISIMESD------------TEE-----NI-IKVAIEVRGIKTKKILNLNKGE-EILIRGP-Y  158 (328)
T ss_pred             CCEEEEECCCCCCCCCCCEEEEECC------------CCC-----CE-EEEEEEEECCCCHHHHHCCCCC-EEEEECC-C
T ss_conf             7589985798887524654887615------------556-----75-9999997123403033124687-6999677-4


Q ss_pred             C---CHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH---HHHHHHHHCCCEEEEEEEEEECCCCH--HHHHHHHHCCCEEE
Q ss_conf             2---0110013310373341440878873223699---99999986598785688887417632--48999997798099
Q gi|254781011|r  112 K---HGQKSQIEGHLFKGARVLVIEDLVTLGNSMF---EFVKVIRDSGGIIQDGIGLFFYDIFP--EVPARFRENNIKLH  183 (228)
Q Consensus       112 ~---hG~~~~iEG~~~~g~~vliVDDviTtG~S~~---~~i~~l~~~g~~V~~~~vii~~~~~~--~~~~~l~~~gi~~~  183 (228)
                      =   +|.+ .|.  -.++.++|||    ..|=...   -.++.|-..|-+|   .+++|.+.++  -..+.|+++++++.
T Consensus       159 wNGifGlk-~I~--~~kn~k~LvI----aRGIgqAP~vpVikkL~~n~NkV---~vIid~~~~~~~fI~eyl~~~~~~~i  228 (328)
T PRK05802        159 WNGVFGLK-NIK--STKNGKSLVI----ARGIGQAPAVPVIKKLYSNGNKV---IVILDKGPFENNFIKEYLEEYNIEVI  228 (328)
T ss_pred             CCCCCCHH-HHH--HCCCCEEEEE----ECCCCCCCCHHHHHHHHHCCCEE---EEEECCCCCCCHHHHHHHHHCCCEEE
T ss_conf             24403705-675--0579739999----35623255559999998689979---99985885531659999985783699


Q ss_pred             EECCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             96329999999998889998999999999972
Q gi|254781011|r  184 YLATWNDILTIAEKLKIFNHDVLEEVRCFLDN  215 (228)
Q Consensus       184 sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~d  215 (228)
                      ..-.++        .+.++++.++.+++++++
T Consensus       229 ~~~~l~--------~g~lsee~K~~i~~~ik~  252 (328)
T PRK05802        229 ECNLLD--------KGELSEEGKDILKEIIKK  252 (328)
T ss_pred             EECCCC--------CCCCCHHHHHHHHHHHHH
T ss_conf             831422--------344578899999999973


No 141
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892    Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=34.16  E-value=35  Score=15.58  Aligned_cols=122  Identities=22%  Similarity=0.252  Sum_probs=62.1

Q ss_pred             EEEEECCCHH-HHHHHHHHHCCCCEE---EEECCCCCCH----HHHHHHH-------------CCCCCCCEEEHHHHHHH
Q ss_conf             8998223125-788999851587178---7631564201----1001331-------------03733414408788732
Q gi|254781011|r   80 IIAGGETAGI-PFATLLAERLNLPMI---YVRKKSKKHG----QKSQIEG-------------HLFKGARVLVIEDLVTL  138 (228)
Q Consensus        80 ~I~G~a~~Gi-p~a~~iA~~l~~p~~---~vRK~~K~hG----~~~~iEG-------------~~~~g~~vliVDDviTt  138 (228)
                      +|.|||-.|- .+|..+|..|+++++   -+|-=++.-|    +.++.|-             +.-.+++=||||=-++.
T Consensus         4 ~ISGpPGSGktTvA~~lA~~Lsl~~iSaG~iRelA~~~Gldl~E~~~aee~~eIDk~iD~~~~E~A~~~~nvvlEsrlag   83 (173)
T TIGR02173         4 TISGPPGSGKTTVAKILAEKLSLKLISAGDIRELAEKMGLDLAESKYAEENPEIDKKIDRRIREIAEKEKNVVLESRLAG   83 (173)
T ss_pred             EEECCCCCCHHHHHHHHHHHCCCCEECCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHH
T ss_conf             87358968647899999986398312020078898642988777344305863116753788554304896688520543


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEEEC-------------------------CCCHHHHHHHHH-CCCEEEEECCHHHHH
Q ss_conf             236999999998659878568888741-------------------------763248999997-798099963299999
Q gi|254781011|r  139 GNSMFEFVKVIRDSGGIIQDGIGLFFY-------------------------DIFPEVPARFRE-NNIKLHYLATWNDIL  192 (228)
Q Consensus       139 G~S~~~~i~~l~~~g~~V~~~~vii~~-------------------------~~~~~~~~~l~~-~gi~~~sl~t~~~il  192 (228)
                      =         +...+++..++.+-+.=                         .|++.-.+|+.+ |||.+.-|.=|+=  
T Consensus        84 W---------~~~~nG~yaD~~iyL~A~levRA~RIA~Re~k~~~~A~~~~~~REe~e~rRy~~iYgIDidDlsiYDL--  152 (173)
T TIGR02173        84 W---------ILKKNGEYADVKIYLKAPLEVRARRIAKRENKDLTVALKEIIEREESEKRRYKEIYGIDIDDLSIYDL--  152 (173)
T ss_pred             H---------HCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE--
T ss_conf             3---------11578896756788608833324332113688989999999998876223456652502343222200--


Q ss_pred             HHHHHCCCCCHHHH-HHHHHHHH
Q ss_conf             99998889998999-99999997
Q gi|254781011|r  193 TIAEKLKIFNHDVL-EEVRCFLD  214 (228)
Q Consensus       193 ~~l~~~~~I~~~~~-~~I~~~l~  214 (228)
                        ..++..++.+.. +.|..+++
T Consensus       153 --vinT~~~~~~~v~~iv~~ald  173 (173)
T TIGR02173       153 --VINTSNLDVDEVSDIVLDALD  173 (173)
T ss_pred             --EEECCCCCHHHHHHHHHHHCC
T ss_conf             --334476681269999998609


No 142
>PRK09019 translation initiation factor Sui1; Validated
Probab=34.04  E-value=38  Score=15.33  Aligned_cols=71  Identities=15%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCCCHHHHHHHHHC
Q ss_conf             17876315642011001331037334144087887322369999999986---598785688887417632489999977
Q gi|254781011|r  102 PMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRD---SGGIIQDGIGLFFYDIFPEVPARFREN  178 (228)
Q Consensus       102 p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~---~g~~V~~~~vii~~~~~~~~~~~l~~~  178 (228)
                      ..+.+|.+.|+.           .|+.|.+|+-+--....+....+.|+.   .|+.|.+-...+.=|..+...+.|++.
T Consensus        31 g~vri~~e~kGR-----------~GK~VTvI~G~~~~~~~lk~Lak~LK~~cG~GGsvK~~~IeiQGD~R~kv~~~L~~~   99 (108)
T PRK09019         31 GIVRIQRQTSGR-----------KGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAK   99 (108)
T ss_pred             CEEEEEEECCCC-----------CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEECCCEEEECCCHHHHHHHHHHHC
T ss_conf             249999861799-----------997189997987999999999999999845785071899998172699999999987


Q ss_pred             CCEEE
Q ss_conf             98099
Q gi|254781011|r  179 NIKLH  183 (228)
Q Consensus       179 gi~~~  183 (228)
                      |+++-
T Consensus       100 G~~vK  104 (108)
T PRK09019        100 GMKVK  104 (108)
T ss_pred             CCEEE
T ss_conf             99056


No 143
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=33.81  E-value=38  Score=15.30  Aligned_cols=162  Identities=15%  Similarity=0.211  Sum_probs=91.9

Q ss_pred             CCCEEEECCCCEE---EECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCEEEEECCCHHHHHHHHHH
Q ss_conf             5976820789867---3118726401426213579899999999999986642175--6667899822312578899985
Q gi|254781011|r   23 IKAVNFSPENPYH---LTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGF--ESIDIIAGGETAGIPFATLLAE   97 (228)
Q Consensus        23 ~~ai~~~~~g~F~---L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~--~~~d~I~G~a~~Gip~a~~iA~   97 (228)
                      -|=|.+.|+|+|+   .--|+       ...-+.+-+.+..-.+.+.+.|.+....  .++|+|+ +|-+|=|-=  |  
T Consensus        70 mNPvLLKPkgdf~SQviv~G~-------a~g~~~~~~Y~~~~~d~~~~~i~eSle~L~~~Yd~vv-~EGAGS~AE--I--  137 (502)
T TIGR00313        70 MNPVLLKPKGDFTSQVIVHGR-------AVGDMNAQEYYKNKVDFLLKAIKESLEILAEEYDLVV-IEGAGSPAE--I--  137 (502)
T ss_pred             CCCCCCCCCCCCEEEEEEEEE-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-EECCCCCCC--C--
T ss_conf             487101678884667898411-------2466761567779999999999999987520288899-826887100--0--


Q ss_pred             HCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHH--HHHHHHHHHHHHC-CCEEEEEEEEEEC-----CCCH
Q ss_conf             158717876315642011001331037334144087887322--3699999999865-9878568888741-----7632
Q gi|254781011|r   98 RLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLG--NSMFEFVKVIRDS-GGIIQDGIGLFFY-----DIFP  169 (228)
Q Consensus        98 ~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG--~S~~~~i~~l~~~-g~~V~~~~vii~~-----~~~~  169 (228)
                        |+   +-|      -..+.-.-.+ -...++||-|+=-=|  -|+.-++.+|.+. --.|.|+  |+++     |..+
T Consensus       138 --NL---~~r------DLaN~~iA~~-~~A~~iLvADIDRGGVFAsi~GTl~LL~~~~r~liKG~--vINkfRG~~~vL~  203 (502)
T TIGR00313       138 --NL---KER------DLANMRIAEL-ADADVILVADIDRGGVFASIYGTLKLLPEEERKLIKGI--VINKFRGNVDVLE  203 (502)
T ss_pred             --CC---CCC------CCHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEECEE--EECCCCCCHHHHH
T ss_conf             --53---315------7224789864-39767999750777432433746661883457500306--8835468724434


Q ss_pred             HHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             48999997-7980999632999999999888999899999999997299
Q gi|254781011|r  170 EVPARFRE-NNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPM  217 (228)
Q Consensus       170 ~~~~~l~~-~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~  217 (228)
                      .|-+++++ -||++.=++.|.|=       ..++++|-..|.+|..-|.
T Consensus       204 ~GI~~lEelTGiPVLGv~PY~~~-------l~lp~EDS~~l~~~~~~G~  245 (502)
T TIGR00313       204 SGIEKLEELTGIPVLGVLPYDEN-------LKLPEEDSLDLEERKARGS  245 (502)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCC-------CCCCHHHHHHHHHHCCCCC
T ss_conf             45689988548423446501257-------7675131056886157899


No 144
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366   This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process.
Probab=33.79  E-value=35  Score=15.56  Aligned_cols=149  Identities=17%  Similarity=0.205  Sum_probs=69.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf             89897899999999998659768207898673118726401426213579899999999999986642175666789982
Q gi|254781011|r    5 YFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGG   84 (228)
Q Consensus         5 ~~~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~   84 (228)
                      +...+++|-+++.+.-.+-+-|-       .||+|              ||-.+-.-.+.+..+....+   .|++|=|+
T Consensus        60 h~~~Q~~IN~lLV~~A~~G~~VV-------RLKGG--------------DP~vFGRgGEE~~~L~~~GI---~~EvvPGv  115 (242)
T TIGR01469        60 HSVKQEEINRLLVELAREGKKVV-------RLKGG--------------DPFVFGRGGEEAEALAEAGI---PFEVVPGV  115 (242)
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEE-------EECCC--------------CCCEECCHHHHHHHHHHCCC---CEEEECCC
T ss_conf             68897899999999985398589-------97489--------------98437856899999996689---79873881


Q ss_pred             CCCHHHHHHHHHHHCCCCEE---------EEECCCCC-CHH-HH-HHH-HCCCC-CCCEEEHHHHHHHH-HHHHHHHHHH
Q ss_conf             23125788999851587178---------76315642-011-00-133-10373-34144087887322-3699999999
Q gi|254781011|r   85 ETAGIPFATLLAERLNLPMI---------YVRKKSKK-HGQ-KS-QIE-GHLFK-GARVLVIEDLVTLG-NSMFEFVKVI  149 (228)
Q Consensus        85 a~~Gip~a~~iA~~l~~p~~---------~vRK~~K~-hG~-~~-~iE-G~~~~-g~~vliVDDviTtG-~S~~~~i~~l  149 (228)
                      ..     |.+.+...++|+-         |+= -.+. .+. .. .+. -.+.. +..+++-     =| ..+-+.++.|
T Consensus       116 Ts-----A~Aa~a~aGiPlThR~~~~s~~f~T-Gh~~~~~~~~~~~~~W~~lA~~~~Tlv~y-----MG~~~l~~I~~~L  184 (242)
T TIGR01469       116 TS-----AIAAAAYAGIPLTHRGLARSVTFVT-GHEAKEGEEALNEVDWEALAKGGGTLVIY-----MGVANLAEIAKEL  184 (242)
T ss_pred             CH-----HHHHHHHCCCCCCCCCCCCCEEEEE-EEEECCCCCCCCCCCHHHCCCCCCCEEEE-----HHHHHHHHHHHHH
T ss_conf             16-----7789985589954130217316885-35406888776757866715767726886-----2178899999999


Q ss_pred             HHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHC
Q ss_conf             8659878568888741763248999997798099963299999999988
Q gi|254781011|r  150 RDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKL  198 (228)
Q Consensus       150 ~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~  198 (228)
                      -++|-.-.-=++++...- ...         .-.-..|+.++.+.+.+.
T Consensus       185 i~~G~~~~tPvA~v~~At-~~~---------Q~~~~~tL~~~~~~~~~~  223 (242)
T TIGR01469       185 IEAGRDPDTPVAVVEWAT-TPN---------QRVVIGTLGDLAEKAAEE  223 (242)
T ss_pred             HHCCCCCCCCEEEEECCC-CCC---------CEEEEEEHHHHHHHHHHH
T ss_conf             963889678274443288-512---------025565388899999972


No 145
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far.  Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=33.70  E-value=38  Score=15.29  Aligned_cols=61  Identities=18%  Similarity=0.089  Sum_probs=37.8

Q ss_pred             CCEEEHHHHHHHHHH-------HHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf             414408788732236-------9999999986598785688887417632489999977980999632999999
Q gi|254781011|r  127 ARVLVIEDLVTLGNS-------MFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILT  193 (228)
Q Consensus       127 ~~vliVDDviTtG~S-------~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~  193 (228)
                      .|++|   |+|.|.|       +..+.+.++.+|.+|-.+.+ =+.+  ..--+.+...-=.++.+-++++|+.
T Consensus       110 ~kvlv---liTDG~S~~~~~~~~~~aa~~lr~~GV~ifaVGV-G~~~--~~eL~~IAs~p~~~~~~~~f~~L~~  177 (186)
T cd01480         110 NKFLL---VITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAV-GSQN--EEPLSRIACDGKSALYRENFAELLW  177 (186)
T ss_pred             CEEEE---EEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-CCCC--HHHHHHHHCCCCCEEEECCHHHHHC
T ss_conf             53899---9845876667406699999999987989999994-7488--7999998589973897368998701


No 146
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=33.52  E-value=35  Score=15.54  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=18.6

Q ss_pred             CEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             144087887322369999999986598785
Q gi|254781011|r  128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ  157 (228)
Q Consensus       128 ~vliVDDviTtG~S~~~~i~~l~~~g~~V~  157 (228)
                      ||++|||-.+...++.   ..+++.|.+|.
T Consensus         2 kVLivdD~~~~~~~l~---~~l~~~g~~v~   28 (55)
T smart00448        2 RILVVDDDPLLRELLK---ALLEREGYEVD   28 (55)
T ss_pred             EEEEEECCHHHHHHHH---HHHHHCCCEEE
T ss_conf             8999937999999999---99997899999


No 147
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141   This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=33.21  E-value=25  Score=16.48  Aligned_cols=122  Identities=17%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             CCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH-------HHHHHH--
Q ss_conf             97682078986731187264014262135798999999999999866421756667899822312-------578899--
Q gi|254781011|r   24 KAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAG-------IPFATL--   94 (228)
Q Consensus        24 ~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~G-------ip~a~~--   94 (228)
                      ||||    .|   =||| |=+| |.-++..-......|++=+.-++.++       .|...|..|       |=+||.  
T Consensus       352 GAIR----DP---LSGR-SYVY-QAmRvtGaadpt~~v~ETl~GKLPQ~-------ki~~tAA~GYSSYGNQIGLAT~~V  415 (1279)
T TIGR01857       352 GAIR----DP---LSGR-SYVY-QAMRVTGAADPTVPVSETLKGKLPQR-------KITTTAAHGYSSYGNQIGLATGQV  415 (1279)
T ss_pred             CCCC----CC---CCCH-HHEE-EEEEEECCCCCCCCHHHHCCCCCCCH-------HHHHHHCCCCCHHHHHHHHHHCCE
T ss_conf             5413----77---7630-0301-10011057788554010115887411-------332201132101222465531613


Q ss_pred             --------HHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHH-------HHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             --------985158717876315642011001331037334144087887-------32236999999998659878568
Q gi|254781011|r   95 --------LAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLV-------TLGNSMFEFVKVIRDSGGIIQDG  159 (228)
Q Consensus        95 --------iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDvi-------TtG~S~~~~i~~l~~~g~~V~~~  159 (228)
                              +|-|+.+.-+. =--||+|--+.    .=.+|+.|+|+===.       .||+|.....+.|+.+||+|.--
T Consensus       416 ~EiYHpGY~AKRMEvGAVv-AAtP~~nV~R~----~P~~GD~iILLGGkTGRDGiGGATGSSK~h~~eS~~~~GAEVQKG  490 (1279)
T TIGR01857       416 SEIYHPGYVAKRMEVGAVV-AATPKENVVRE----KPEPGDVIILLGGKTGRDGIGGATGSSKEHTVESLELCGAEVQKG  490 (1279)
T ss_pred             EEEECCCCEEEEEEECCEE-EECCCCCCEEC----CCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECC
T ss_conf             4776578501245300144-50588873526----789887899817852777556776885666368686468603038


Q ss_pred             EEEEECC
Q ss_conf             8887417
Q gi|254781011|r  160 IGLFFYD  166 (228)
Q Consensus       160 ~vii~~~  166 (228)
                      =+...|.
T Consensus       491 NAp~ERK  497 (1279)
T TIGR01857       491 NAPEERK  497 (1279)
T ss_pred             CCCCCCC
T ss_conf             8743111


No 148
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=33.13  E-value=39  Score=15.23  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=14.7

Q ss_pred             CCCCEEEEECCCHHHHHHHHHH
Q ss_conf             6667899822312578899985
Q gi|254781011|r   76 ESIDIIAGGETAGIPFATLLAE   97 (228)
Q Consensus        76 ~~~d~I~G~a~~Gip~a~~iA~   97 (228)
                      ..||.|+|..+||| +|..+|.
T Consensus        33 ~~fDliaGTStGgi-iA~~la~   53 (288)
T cd07213          33 DQIDLFAGTSAGSL-IALGLAL   53 (288)
T ss_pred             HHCCEEEECCHHHH-HHHHHHC
T ss_conf             44377897389899-9999956


No 149
>pfam00595 PDZ PDZ domain (Also known as DHR or GLGF). PDZ domains are found in diverse signaling proteins.
Probab=32.68  E-value=31  Score=15.93  Aligned_cols=38  Identities=32%  Similarity=0.292  Sum_probs=33.8

Q ss_pred             HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             10373341440878873223699999999865987856
Q gi|254781011|r  121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD  158 (228)
Q Consensus       121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~  158 (228)
                      +.+.+|++++=|++.-..+-+..++++.++.++-.|.-
T Consensus        40 ~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L   77 (80)
T pfam00595        40 GGLQVGDRILSINGQDLENMSHDEAVLALKGSGGEVTL   77 (80)
T ss_pred             CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf             87999999999999998999899999999749992999


No 150
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad 
Probab=32.36  E-value=29  Score=16.13  Aligned_cols=89  Identities=12%  Similarity=0.121  Sum_probs=46.6

Q ss_pred             CCCEE-EHHHHHHHHHHHHHHH-HHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECC--HHHHHHHHHHCCCC
Q ss_conf             34144-0878873223699999-99986598785688887417632489999977980999632--99999999988899
Q gi|254781011|r  126 GARVL-VIEDLVTLGNSMFEFV-KVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLAT--WNDILTIAEKLKIF  201 (228)
Q Consensus       126 g~~vl-iVDDviTtG~S~~~~i-~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t--~~~il~~l~~~~~I  201 (228)
                      |+.|+ .++|+.++|+-.+.+. +.+--...-.+|.+.++.  ....-.+.+++.||+.+.+..  +.+..+..   ...
T Consensus        66 ~KpV~a~~~~~aaSg~Y~lAs~ad~I~a~p~s~vGSIGv~~--~~~~~~~~l~k~Gi~~~~~~~G~~K~~~~~~---~~~  140 (208)
T cd07023          66 KKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIG--QGPNLEELLDKLGIERDTIKSGPGKDKGSPD---RPL  140 (208)
T ss_pred             CCEEEEEECCHHHCHHHHHHHCCCEEEECCCCEECCCCEEE--ECCCHHHHHHHCCCCEEEEECCCCCCCCCCC---CCC
T ss_conf             98599997771113345655128779977876333200366--3268899999769706999525623345777---789


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q ss_conf             989999999999729977
Q gi|254781011|r  202 NHDVLEEVRCFLDNPMQW  219 (228)
Q Consensus       202 ~~~~~~~I~~~l~dP~~W  219 (228)
                      ++++.+.+++++++-+++
T Consensus       141 s~e~~~~~~~~ld~~~~~  158 (208)
T cd07023         141 TEEERAILQALVDDIYDQ  158 (208)
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999


No 151
>TIGR00432 arcsn_tRNA_tgt archaeosine tRNA-ribosyltransferase; InterPro: IPR004804   The archaeosine tRNA-guanine transglycosylase (tgt) differs from the tgt of Escherichia coli and other bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the archaea. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine (IPR004803 from INTERPRO). Archaeoglobus fulgidus has both enzymes. .
Probab=32.33  E-value=41  Score=15.15  Aligned_cols=29  Identities=21%  Similarity=0.437  Sum_probs=16.1

Q ss_pred             CCCCCCCEEEH---HHHHHHHHHHHHHHHHHH
Q ss_conf             03733414408---788732236999999998
Q gi|254781011|r  122 HLFKGARVLVI---EDLVTLGNSMFEFVKVIR  150 (228)
Q Consensus       122 ~~~~g~~vliV---DDviTtG~S~~~~i~~l~  150 (228)
                      ++.+.+.||||   |.++++|++++.++++.+
T Consensus       613 ~~R~~~EVL~VN~DDELLA~G~~~L~~~El~~  644 (658)
T TIGR00432       613 ELRAYDEVLVVNEDDELLAYGKALLNAIELRD  644 (658)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             66876536887277124565368864788875


No 152
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=31.71  E-value=41  Score=15.08  Aligned_cols=19  Identities=37%  Similarity=0.690  Sum_probs=13.6

Q ss_pred             CCCEEEEECCCHHHHHHHHH
Q ss_conf             66789982231257889998
Q gi|254781011|r   77 SIDIIAGGETAGIPFATLLA   96 (228)
Q Consensus        77 ~~d~I~G~a~~Gip~a~~iA   96 (228)
                      -||.|+|..+||| +|..++
T Consensus        42 ~FDli~GTSTGgi-IAl~Lg   60 (309)
T cd07216          42 YFDLIGGTSTGGL-IAIMLG   60 (309)
T ss_pred             CCCEEEEECHHHH-HHHHHH
T ss_conf             0037887088999-999982


No 153
>pfam00573 Ribosomal_L4 Ribosomal protein L4/L1 family. This family includes Ribosomal L4/L1 from eukaryotes and archaebacteria and L4 from eubacteria. L4 from yeast has been shown to bind rRNA.
Probab=31.64  E-value=42  Score=15.07  Aligned_cols=83  Identities=14%  Similarity=0.152  Sum_probs=42.5

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHH--HHHHHHCC-CC
Q ss_conf             3341440878873223699999999865987856888874176324899999779809996329999--99999888-99
Q gi|254781011|r  125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI--LTIAEKLK-IF  201 (228)
Q Consensus       125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~i--l~~l~~~~-~I  201 (228)
                      ...++++|||+-.+=....++++.|++.|..-..++.|.  +.. ...-.++..|++-..+++.++|  .+.+.... .|
T Consensus       103 ~~~~l~vvd~~~~~~~KTk~~~~~L~~l~~~~~~~LiV~--~~~-~~n~~~a~rNi~~v~v~~~~~lnv~dll~~~~lvi  179 (190)
T pfam00573       103 REGKLVVVDDFELEIPKTKEAVKLLKNLGLKGKSVLIVV--DEK-DENLYLSARNLPGVDVVTVDGLNVYDLLPADKVVI  179 (190)
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEE--CCC-HHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEE
T ss_conf             477628961477788888999999997399887179997--880-16799997087881587548820999847996998


Q ss_pred             CHHHHHHHH
Q ss_conf             989999999
Q gi|254781011|r  202 NHDVLEEVR  210 (228)
Q Consensus       202 ~~~~~~~I~  210 (228)
                      +++-++.|+
T Consensus       180 t~~Al~~l~  188 (190)
T pfam00573       180 TKSALEKLE  188 (190)
T ss_pred             EHHHHHHHH
T ss_conf             789999985


No 154
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.24  E-value=41  Score=15.11  Aligned_cols=17  Identities=24%  Similarity=0.208  Sum_probs=7.8

Q ss_pred             HHCCCCCCCEEEHHHHH
Q ss_conf             31037334144087887
Q gi|254781011|r  120 EGHLFKGARVLVIEDLV  136 (228)
Q Consensus       120 EG~~~~g~~vliVDDvi  136 (228)
                      +-.+.++.|++.+|-.-
T Consensus       143 ~~~i~~~Tklv~~Esps  159 (433)
T PRK08134        143 RAAIRPNTRLLFGETLG  159 (433)
T ss_pred             HHHCCCCCEEEEEECCC
T ss_conf             87559875289985389


No 155
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit; InterPro: IPR011883 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA .    .
Probab=30.70  E-value=43  Score=14.97  Aligned_cols=36  Identities=17%  Similarity=0.023  Sum_probs=26.7

Q ss_pred             HHHHHHCC-CEEEEEEEEEEC-----CCCHHHHHHHHHCCCE
Q ss_conf             99998659-878568888741-----7632489999977980
Q gi|254781011|r  146 VKVIRDSG-GIIQDGIGLFFY-----DIFPEVPARFRENNIK  181 (228)
Q Consensus       146 i~~l~~~g-~~V~~~~vii~~-----~~~~~~~~~l~~~gi~  181 (228)
                      -++|+-+| .+.+.+-.-++-     -..+.|+++|++|||-
T Consensus        50 ~~A~~~~GW~~~VeV~~~L~P~WTTdwITe~are~Lr~yGIA   91 (152)
T TIGR02159        50 RDALRALGWVEEVEVKTSLDPAWTTDWITEDAREKLREYGIA   91 (152)
T ss_pred             HHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             999974789751158877189878400270036888850887


No 156
>PRK08064 cystathionine beta-lyase; Provisional
Probab=30.38  E-value=20  Score=17.14  Aligned_cols=12  Identities=8%  Similarity=0.335  Sum_probs=5.2

Q ss_pred             CCCCCCEEEHHH
Q ss_conf             373341440878
Q gi|254781011|r  123 LFKGARVLVIED  134 (228)
Q Consensus       123 ~~~g~~vliVDD  134 (228)
                      +.++.|++.+|-
T Consensus       135 i~~~Tklv~~Es  146 (390)
T PRK08064        135 IKPNTKLFYVET  146 (390)
T ss_pred             CCCCCEEEEEEC
T ss_conf             788845999978


No 157
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857   Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined .   These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=30.33  E-value=44  Score=14.93  Aligned_cols=83  Identities=25%  Similarity=0.348  Sum_probs=42.9

Q ss_pred             HHHCCCCCCC--EEEEECCCHHH--HHHHHHHH--CCCCEEEEEC---CCCC----------C-H-HH---HHHHHCCCC
Q ss_conf             6421756667--89982231257--88999851--5871787631---5642----------0-1-10---013310373
Q gi|254781011|r   70 LRNIGFESID--IIAGGETAGIP--FATLLAER--LNLPMIYVRK---KSKK----------H-G-QK---SQIEGHLFK  125 (228)
Q Consensus        70 ~~~~~~~~~d--~I~G~a~~Gip--~a~~iA~~--l~~p~~~vRK---~~K~----------h-G-~~---~~iEG~~~~  125 (228)
                      .......++|  +++|+=-.||+  +...+...  .+.|-+.++-   .++.          | | |.   ...|-...+
T Consensus        19 ~~~~~~e~~~~iv~~GmGGSGi~G~~~~~~~~~~~~~~Pvfvv~DY~~p~~v~~~~~lIAvSYSGNT~ETl~~~e~A~~~   98 (338)
T TIGR02128        19 DEILKIEAYDEIVISGMGGSGIAGRILSELLLEKSFEVPVFVVKDYRLPAFVDGKTLLIAVSYSGNTEETLSAVEEAKKK   98 (338)
T ss_pred             CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             43213465562278725657899999999865324788888870778969889851799986178668999999999865


Q ss_pred             CCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             3414408788732236999999998659878568
Q gi|254781011|r  126 GARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG  159 (228)
Q Consensus       126 g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~  159 (228)
                      +.+|++    |||||.+.+..+   +.|..|.-+
T Consensus        99 ~~~~~a----ITSGG~L~e~A~---e~g~~~i~i  125 (338)
T TIGR02128        99 GAKVIA----ITSGGKLEEMAK---EEGLDVIKI  125 (338)
T ss_pred             CCCEEE----EECCCHHHHHCC---CCCCCEEEE
T ss_conf             795599----944853886301---148756882


No 158
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=30.25  E-value=44  Score=14.92  Aligned_cols=53  Identities=13%  Similarity=0.088  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCC
Q ss_conf             999999998659878568888741763248999997798099963--2999999999888
Q gi|254781011|r  142 MFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLA--TWNDILTIAEKLK  199 (228)
Q Consensus       142 ~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~--t~~~il~~l~~~~  199 (228)
                      -..+.+.|++.|++++-     ..+.-+.+...|+++||+++..-  +.+|.++.+.+..
T Consensus        54 G~~~a~~l~~~gvdvvi-----~~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~  108 (121)
T COG1433          54 GIRIAELLVDEGVDVVI-----ASNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGE  108 (121)
T ss_pred             HHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCC
T ss_conf             17799999976998999-----77669779999997495799659989999999986187


No 159
>PRK13949 shikimate kinase; Provisional
Probab=30.25  E-value=21  Score=16.99  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=20.5

Q ss_pred             EEEEECCCH-HHHHHHHHHHCCCCEEEE
Q ss_conf             899822312-578899985158717876
Q gi|254781011|r   80 IIAGGETAG-IPFATLLAERLNLPMIYV  106 (228)
Q Consensus        80 ~I~G~a~~G-ip~a~~iA~~l~~p~~~v  106 (228)
                      +++|....| -.++-.+|.+++.||+=.
T Consensus         5 ~LiG~mGsGKstiGk~La~~l~~~fiD~   32 (169)
T PRK13949          5 FLVGYMGAGKTTLGKALARELGLSFIDL   32 (169)
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCEEEC
T ss_conf             9979999988999999999959997978


No 160
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=30.10  E-value=44  Score=14.91  Aligned_cols=61  Identities=18%  Similarity=0.168  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC-----CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHC
Q ss_conf             87322369999999986598785688887417-----63248999997798099963299999999988
Q gi|254781011|r  135 LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD-----IFPEVPARFRENNIKLHYLATWNDILTIAEKL  198 (228)
Q Consensus       135 viTtG~S~~~~i~~l~~~g~~V~~~~vii~~~-----~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~  198 (228)
                      |+.-.|-...++++.+-+|....+++|=+--+     +.+...+--+++|++   ++++.||+++....
T Consensus       136 Vl~R~GHTEasVdLarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~---~iti~dli~yr~~~  201 (203)
T COG0108         136 VLERRGHTEAAVDLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLP---VITIEDLIEYRKKH  201 (203)
T ss_pred             EECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCC---EEEHHHHHHHHHHH
T ss_conf             6314880799999999839997379999867986615738999999983996---88899999999850


No 161
>PRK09028 cystathionine beta-lyase; Provisional
Probab=30.03  E-value=27  Score=16.27  Aligned_cols=16  Identities=19%  Similarity=0.262  Sum_probs=7.4

Q ss_pred             HHCCCCCCCEEEHHHH
Q ss_conf             3103733414408788
Q gi|254781011|r  120 EGHLFKGARVLVIEDL  135 (228)
Q Consensus       120 EG~~~~g~~vliVDDv  135 (228)
                      +..+.++.|++.+|-.
T Consensus       140 ~~~i~~~Tklv~~Etp  155 (394)
T PRK09028        140 RELIRPNTKVLFLESP  155 (394)
T ss_pred             HHHCCCCCEEEEEECC
T ss_conf             8536877269999558


No 162
>pfam04659 Arch_fla_DE Archaeal flagella protein. Family of archaeal flaD and flaE proteins. Conserved region found at N-terminus of flaE but towards the C-terminus of flaD.
Probab=29.94  E-value=44  Score=14.89  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=27.3

Q ss_pred             CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             32999999999888999899999999997299
Q gi|254781011|r  186 ATWNDILTIAEKLKIFNHDVLEEVRCFLDNPM  217 (228)
Q Consensus       186 ~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~  217 (228)
                      -...++|++.++-|+||++..+.+..|++...
T Consensus        36 ~~~~~~LdYY~~igWIs~~v~~~L~~~lkG~~   67 (99)
T pfam04659        36 NNLVDALDYYENLGWISEEVRAQLLKFLKGID   67 (99)
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf             20899999999838667899999999984678


No 163
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=29.80  E-value=26  Score=16.38  Aligned_cols=64  Identities=14%  Similarity=0.234  Sum_probs=26.4

Q ss_pred             HHHCCCCCCCEEEHHHHHHHHH---HHHHHHHHHHHCCCEEEEEEEEEECCCCHH--HHHHHH-HCCCEEEEECCH
Q ss_conf             3310373341440878873223---699999999865987856888874176324--899999-779809996329
Q gi|254781011|r  119 IEGHLFKGARVLVIEDLVTLGN---SMFEFVKVIRDSGGIIQDGIGLFFYDIFPE--VPARFR-ENNIKLHYLATW  188 (228)
Q Consensus       119 iEG~~~~g~~vliVDDviTtG~---S~~~~i~~l~~~g~~V~~~~vii~~~~~~~--~~~~l~-~~gi~~~sl~t~  188 (228)
                      ++..+.++.|++.+|-.-.-.-   -+....++.++.|+     .+++| +-|..  ....|+ -..|-+||++.|
T Consensus       142 ~~~ai~~~Tklv~~EtpsNP~l~v~Di~~ia~iA~~~g~-----~~vVD-NTfatP~~~~Pl~~GaDivvhS~TKy  211 (398)
T PRK08249        142 IEREIAKGCDLLYLETPTNPTLKITDIRRLSAAAHEVGA-----LVVVD-NTFATPINQNPLALGADLVVHSATKF  211 (398)
T ss_pred             HHHHCCCCCEEEEEECCCCCCCEEECHHHHHHHHHHCCC-----EEEEE-CCCCHHHCCCCCCCCCCEEEECCCCE
T ss_conf             998558886189984489997466647999999987499-----69984-77420312782115798799726620


No 164
>KOG0337 consensus
Probab=29.43  E-value=35  Score=15.54  Aligned_cols=67  Identities=22%  Similarity=0.243  Sum_probs=31.1

Q ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             99985158717876315642011001331037334144087887322369999999986598785688887
Q gi|254781011|r   93 TLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus        93 ~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii  163 (228)
                      +-|+..+..-|+++|++.|..-....+.+...+.+.++-    +.|++-+.-....++.+|..+.++..-.
T Consensus       229 tkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf----~~tk~hve~~~~ll~~~g~~~s~iyssl  295 (529)
T KOG0337         229 TKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVF----VATKHHVEYVRGLLRDFGGEGSDIYSSL  295 (529)
T ss_pred             HHCCHHHHHHEEEECCHHHHHHHHHHHHCCCCCCCEEEE----ECCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             210545451422306178899999998512566650698----3153047898878986398744111445


No 165
>PRK05968 hypothetical protein; Provisional
Probab=29.28  E-value=28  Score=16.15  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=12.7

Q ss_pred             CCCCEEEHHHHHHHHHH---HHHHHHHHHHCCC
Q ss_conf             33414408788732236---9999999986598
Q gi|254781011|r  125 KGARVLVIEDLVTLGNS---MFEFVKVIRDSGG  154 (228)
Q Consensus       125 ~g~~vliVDDviTtG~S---~~~~i~~l~~~g~  154 (228)
                      ++.|++.+|-.-.-.-.   +...+++.++.|+
T Consensus       146 ~~Tklv~~EtpsNP~l~v~DI~~ia~iA~~~g~  178 (389)
T PRK05968        146 PGAKLLYLESPTSWVFELQDIAALAALAKRHGV  178 (389)
T ss_pred             CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             687289997899988727389999999998399


No 166
>PRK02747 consensus
Probab=29.12  E-value=43  Score=15.00  Aligned_cols=78  Identities=10%  Similarity=0.043  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHH-----HHHHH-HCCCEEEE---ECCHHHHHHHHHHCC--------
Q ss_conf             32236999999998659878568888741763248-----99999-77980999---632999999999888--------
Q gi|254781011|r  137 TLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEV-----PARFR-ENNIKLHY---LATWNDILTIAEKLK--------  199 (228)
Q Consensus       137 TtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~-----~~~l~-~~gi~~~s---l~t~~~il~~l~~~~--------  199 (228)
                      .|+-+..+.++.+.+.|+.-. ++.=+++|....|     -+.+. ..++++..   +.+++|+.+.+...+        
T Consensus       153 ~t~~~~~~~~~~~~~~G~gei-l~tdI~rDG~~~G~dl~l~~~i~~~~~~pvIasGGv~~~~di~~~~~~~~~~av~~g~  231 (257)
T PRK02747        153 PTGIDAVEFAQKVVSLGAGEI-LLTSMDRDGTKAGFDLPLTRAIADAVRVPVIASGGVGTLDHLVEGVRDGHATAVLAAS  231 (257)
T ss_pred             ECCCHHHHHHHHHHHCCCCEE-EEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf             343039999999997099889-9998835573267886999999860799899977999999999999838984998832


Q ss_pred             --CCCHHHHHHHHHHHHH
Q ss_conf             --9998999999999972
Q gi|254781011|r  200 --IFNHDVLEEVRCFLDN  215 (228)
Q Consensus       200 --~I~~~~~~~I~~~l~d  215 (228)
                        +..+.....+++|+.+
T Consensus       232 ~~~~~~~~l~~ak~~L~~  249 (257)
T PRK02747        232 IFHFGTYTIGEAKAHMAA  249 (257)
T ss_pred             HHHCCCCCHHHHHHHHHH
T ss_conf             677699899999999998


No 167
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=29.02  E-value=43  Score=14.99  Aligned_cols=35  Identities=23%  Similarity=0.397  Sum_probs=30.7

Q ss_pred             CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             37334144087887322369999999986598785
Q gi|254781011|r  123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ  157 (228)
Q Consensus       123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~  157 (228)
                      +.+|++++=|++.-.++.+..+++..+++.+..|.
T Consensus        44 l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   78 (85)
T smart00228       44 LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVT   78 (85)
T ss_pred             CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf             98999999999999899989999999877999799


No 168
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=28.97  E-value=46  Score=14.78  Aligned_cols=54  Identities=13%  Similarity=0.023  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHCCCEEEEEEEEEECC-----CCHHHHHHHHHCCCEEEEECCHHHHHHHHHH
Q ss_conf             69999999986598785688887417-----6324899999779809996329999999998
Q gi|254781011|r  141 SMFEFVKVIRDSGGIIQDGIGLFFYD-----IFPEVPARFRENNIKLHYLATWNDILTIAEK  197 (228)
Q Consensus       141 S~~~~i~~l~~~g~~V~~~~vii~~~-----~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~  197 (228)
                      -...++++.+-+|...++++|=+-.+     |.+.-.+--++++++   +.|+.||++|-.+
T Consensus       142 HTEA~vdL~~lAG~~p~~vi~Ei~~~dG~mar~~~l~~fa~~h~Lk---iiTIaDLI~YR~~  200 (339)
T PRK09314        142 HTEGSVDLCKLAGLKPVAVICEIVKEDGTMARRDDLEIFAKKHNLK---MIYVSDLIEYRLK  200 (339)
T ss_pred             CHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCE---EEEHHHHHHHHHH
T ss_conf             1689999999859986499999965889683489999999984983---9999999999983


No 169
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=28.92  E-value=46  Score=14.78  Aligned_cols=42  Identities=12%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             HHCCCCCCCE-------EEHHHHHHH------HHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf             3103733414-------408788732------23699999999865987856888874
Q gi|254781011|r  120 EGHLFKGARV-------LVIEDLVTL------GNSMFEFVKVIRDSGGIIQDGIGLFF  164 (228)
Q Consensus       120 EG~~~~g~~v-------liVDDviTt------G~S~~~~i~~l~~~g~~V~~~~vii~  164 (228)
                      -|.+.+++.+       .+..|++-+      +.++..+++.+.++|.   |+++.+.
T Consensus       240 kG~i~~~~pvLVRVHs~~~~~Dv~Gs~~~~~~~~qL~~Am~~I~~eG~---GVlVyLr  294 (369)
T PRK12485        240 MGDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGH---GVVVVLA  294 (369)
T ss_pred             ECCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCC---EEEEEEE
T ss_conf             457788998469998115513342586689765369999999997298---5999981


No 170
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=28.79  E-value=30  Score=15.97  Aligned_cols=16  Identities=13%  Similarity=0.200  Sum_probs=7.5

Q ss_pred             HCCCCCCCEEEHHHHH
Q ss_conf             1037334144087887
Q gi|254781011|r  121 GHLFKGARVLVIEDLV  136 (228)
Q Consensus       121 G~~~~g~~vliVDDvi  136 (228)
                      ..+.++.+++.+|-.-
T Consensus       144 ~~i~~~Tkli~~EsPs  159 (431)
T PRK08248        144 AAITDKTKALFAETIG  159 (431)
T ss_pred             HHCCCCCEEEEEECCC
T ss_conf             7537774599960489


No 171
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some 
Probab=28.77  E-value=46  Score=14.76  Aligned_cols=79  Identities=19%  Similarity=0.281  Sum_probs=35.4

Q ss_pred             EEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHH----HHHHHHHHHCCCEEEEEEEEEECCCCHH-------H
Q ss_conf             7876315642011001331037334144087887322369----9999999865987856888874176324-------8
Q gi|254781011|r  103 MIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSM----FEFVKVIRDSGGIIQDGIGLFFYDIFPE-------V  171 (228)
Q Consensus       103 ~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~----~~~i~~l~~~g~~V~~~~vii~~~~~~~-------~  171 (228)
                      ..|+|-..++.....|.+.-..-++.+-+..|..+.+..-    .+.++.+++ |    +++++-..+|+..       -
T Consensus         2 ~gY~RvSt~~Q~~~~Q~~~l~~~~~~~~i~~D~~sg~~~~Rp~~~~ll~~~~~-g----d~lvv~~ldRl~R~~~~~~~~   76 (126)
T cd03768           2 IGYARVSTDDQSLERQLEALKAAGECDKIFEEKGSGGKKERPELQKLLEDLRE-G----DTLVVTKLDRLGRSTKDLLEI   76 (126)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHCCC-C----CEEEEEECCCCCCCHHHHHHH
T ss_conf             89997388868999999999971884679998656167788335677552236-9----889998778247889999999


Q ss_pred             HHHHHHCCCEEEEEC
Q ss_conf             999997798099963
Q gi|254781011|r  172 PARFRENNIKLHYLA  186 (228)
Q Consensus       172 ~~~l~~~gi~~~sl~  186 (228)
                      .+.|.+.||.++++-
T Consensus        77 ~~~l~~~gv~l~~~~   91 (126)
T cd03768          77 VEELREKGVSLRSLT   91 (126)
T ss_pred             HHHHHHCCCEEEECC
T ss_conf             999997798799755


No 172
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=28.55  E-value=38  Score=15.36  Aligned_cols=41  Identities=12%  Similarity=0.212  Sum_probs=22.8

Q ss_pred             HHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             99977980999632999999999888999899999999997
Q gi|254781011|r  174 RFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLD  214 (228)
Q Consensus       174 ~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~  214 (228)
                      .+..+-+.+..-+..++|+++|.+.+.+++++.+.|+..-.
T Consensus         8 ~Lr~nr~~L~~~l~~~~lld~L~~~~vlt~~~~e~I~~~~t   48 (88)
T smart00114        8 LLRRNRVRLGEELGVDGLLDYLVEKNVLTEKEIEAIKAATT   48 (88)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf             99997999999684899999998779999899999993699


No 173
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria.  The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=28.44  E-value=34  Score=15.64  Aligned_cols=59  Identities=25%  Similarity=0.283  Sum_probs=34.0

Q ss_pred             CCCCCEEEECCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCEEE-EECCCHHHHHHHHHHHCCCCEE
Q ss_conf             87264014262135-798999999999999866421756667899-8223125788999851587178
Q gi|254781011|r   39 GIVSPLYIDCRKLI-SFVRARSMIMDLTAKTVLRNIGFESIDIIA-GGETAGIPFATLLAERLNLPMI  104 (228)
Q Consensus        39 G~~Sp~Y~d~r~~~-s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~-G~a~~Gip~a~~iA~~l~~p~~  104 (228)
                      |.--=+.++...+- .+|..   .+..+++.+.+    .++|.|. |-...|--++..+|.+|+.|++
T Consensus        59 GaD~v~~v~~~~~~~~~~~~---~a~~la~~i~~----~~~dlVl~g~~s~g~~~~~~lA~~L~~~~v  119 (181)
T cd01985          59 GADKVLLVEDPALAGYDPEA---TAKALAALIKK----EKPDLILAGATSIGKQLAPRVAALLGVPQI  119 (181)
T ss_pred             CCCEEEEECCCCCCCCCHHH---HHHHHHHHHHH----CCCCEEEECCCHHHCCHHHHHHHHHCCCCC
T ss_conf             89789998167445768899---99999999986----099899960410222589999998599731


No 174
>PRK13937 phosphoheptose isomerase; Provisional
Probab=28.40  E-value=47  Score=14.72  Aligned_cols=115  Identities=16%  Similarity=0.055  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCC----------------CCCHH--
Q ss_conf             989999999999998664217566678998223125788999851587178763156----------------42011--
Q gi|254781011|r   54 FVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKS----------------KKHGQ--  115 (228)
Q Consensus        54 ~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~----------------K~hG~--  115 (228)
                      .++....+++.+.+.+.+.    +-=.++| --|.-..|.-+|..+-.++...|+.-                .|+|-  
T Consensus        24 ~~~~I~~~a~~i~~~~~~g----~kI~~~G-NGGSaa~A~Hfa~dl~~~~~~~r~~lpaisL~~d~~~lTA~~ND~g~~~   98 (192)
T PRK13937         24 LLAAIAKIAEALIEALASG----GKLLLCG-NGGSAADAQHIAAELVGRYKKERPALPAIALTTDTSALTAIGNDYGYER   98 (192)
T ss_pred             HHHHHHHHHHHHHHHHHCC----CEEEEEE-CCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHCCCCHHH
T ss_conf             4999999999999999879----9899996-8631888999999996413557898535776788287776427787899


Q ss_pred             --HHHHHHCCCCCCCEEEHHHHHHHHHH--HHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCE
Q ss_conf             --00133103733414408788732236--9999999986598785688887417632489999977980
Q gi|254781011|r  116 --KSQIEGHLFKGARVLVIEDLVTLGNS--MFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIK  181 (228)
Q Consensus       116 --~~~iEG~~~~g~~vliVDDviTtG~S--~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~  181 (228)
                        .++++....+|+=++.+   -|+|.|  ++++++.-++.|++|++.   .  +...+.-..+.+..+.
T Consensus        99 if~~ql~~~~~~gDili~i---S~SGnS~Nii~A~~~A~~~g~~~i~l---t--G~~gg~l~~~~D~~i~  160 (192)
T PRK13937         99 VFARQVEALGRPGDVLIGI---STSGNSPNVLAALEKARELGMTTIGL---T--GRDGGKMKELCDLLLI  160 (192)
T ss_pred             HHHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHHHCCCEEEEE---E--CCCCHHHHHHCCEEEE
T ss_conf             9999999557889889997---79999979999999999879979999---8--8896057883998999


No 175
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=28.29  E-value=47  Score=14.71  Aligned_cols=16  Identities=6%  Similarity=0.304  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHCCC
Q ss_conf             2369999999986598
Q gi|254781011|r  139 GNSMFEFVKVIRDSGG  154 (228)
Q Consensus       139 G~S~~~~i~~l~~~g~  154 (228)
                      ||-+...+..|+++++
T Consensus       301 GGMlSNl~sQLkeqna  316 (472)
T COG5016         301 GGMLSNLESQLKEQNA  316 (472)
T ss_pred             HHHHHHHHHHHHHCCH
T ss_conf             1788999999987345


No 176
>KOG1993 consensus
Probab=28.12  E-value=39  Score=15.25  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999997299778860988
Q gi|254781011|r  206 LEEVRCFLDNPMQWSKKNGGI  226 (228)
Q Consensus       206 ~~~I~~~l~dP~~W~~~~g~~  226 (228)
                      -+.+++|-.||++|-.+++|.
T Consensus       387 ~~eLEeW~~dPE~~~~Eq~~~  407 (978)
T KOG1993         387 EEELEEWTQDPEGWVLEQSGG  407 (978)
T ss_pred             HHHHHHHHCCHHHHHHHCCCC
T ss_conf             988988750958764522456


No 177
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=27.42  E-value=32  Score=15.80  Aligned_cols=18  Identities=6%  Similarity=0.174  Sum_probs=7.9

Q ss_pred             HHCCCCCCCEEEHHHHHH
Q ss_conf             310373341440878873
Q gi|254781011|r  120 EGHLFKGARVLVIEDLVT  137 (228)
Q Consensus       120 EG~~~~g~~vliVDDviT  137 (228)
                      +-.+.++.|++.+|-...
T Consensus       137 ~~~i~~~Tkli~~Esp~N  154 (386)
T PRK07811        137 RAAITPRTKLIWVETPTN  154 (386)
T ss_pred             HHHCCCCCEEEEEECCCC
T ss_conf             865588834999977999


No 178
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.05  E-value=39  Score=15.28  Aligned_cols=20  Identities=10%  Similarity=-0.047  Sum_probs=9.5

Q ss_pred             EEEECCHHHHHHHHHHCCCCC
Q ss_conf             999632999999999888999
Q gi|254781011|r  182 LHYLATWNDILTIAEKLKIFN  202 (228)
Q Consensus       182 ~~sl~t~~~il~~l~~~~~I~  202 (228)
                      ...++|++ +.+++...+..+
T Consensus       535 ~w~i~t~W-l~~~~~~~g~~~  554 (612)
T COG3387         535 PWIITTLW-LSEYYLALGRLD  554 (612)
T ss_pred             CCEEEEEH-HHHHHHHCCCCH
T ss_conf             12463038-999999746827


No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=27.03  E-value=50  Score=14.56  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=43.1

Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCHHHHH---HH----HCCCCCCCEEEHHHHHHHHH-HHHHHHHHHHHCCCEEEEEEE
Q ss_conf             78899985158717876315642011001---33----10373341440878873223-699999999865987856888
Q gi|254781011|r   90 PFATLLAERLNLPMIYVRKKSKKHGQKSQ---IE----GHLFKGARVLVIEDLVTLGN-SMFEFVKVIRDSGGIIQDGIG  161 (228)
Q Consensus        90 p~a~~iA~~l~~p~~~vRK~~K~hG~~~~---iE----G~~~~g~~vliVDDviTtG~-S~~~~i~~l~~~g~~V~~~~v  161 (228)
                      +-+..+.....-.+.+++++.+..+....   ++    .....+.||+|||++=+-.. +.-...+.|++=...+.-+++
T Consensus        67 ~~C~~~~~~~HPD~~~i~p~~~~i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~  146 (329)
T PRK08058         67 TNCKRIESGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILL  146 (329)
T ss_pred             HHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             89999876999976774566140779999999999643875788679997347762999999999986468978679987


Q ss_pred             EE
Q ss_conf             87
Q gi|254781011|r  162 LF  163 (228)
Q Consensus       162 ii  163 (228)
                      --
T Consensus       147 t~  148 (329)
T PRK08058        147 TE  148 (329)
T ss_pred             EC
T ss_conf             29


No 180
>KOG0741 consensus
Probab=26.96  E-value=50  Score=14.56  Aligned_cols=149  Identities=17%  Similarity=0.240  Sum_probs=88.1

Q ss_pred             HHHHHHHHHCCCCCCC-EEEEECCCH-HHHHHHHHHHCCCCEEEEECCCCCCH-----H----HHHHHHCCCCCCCEEEH
Q ss_conf             9999866421756667-899822312-57889998515871787631564201-----1----00133103733414408
Q gi|254781011|r   64 LTAKTVLRNIGFESID-IIAGGETAG-IPFATLLAERLNLPMIYVRKKSKKHG-----Q----KSQIEGHLFKGARVLVI  132 (228)
Q Consensus        64 ~~~~~i~~~~~~~~~d-~I~G~a~~G-ip~a~~iA~~l~~p~~~vRK~~K~hG-----~----~~~iEG~~~~g~~vliV  132 (228)
                      .++++++......-.. .+.|++-.| ..+|+-+|..-+-||+=+=....--|     +    .+..|.....--.|++|
T Consensus       525 llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivv  604 (744)
T KOG0741         525 LLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVV  604 (744)
T ss_pred             HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             99998633466763589986699887688999997527998479737787037466788999999888763386508998


Q ss_pred             HHHHH------HH----HHHHHHHHH-HHHCCCEEEEEEEEEECCCCHHHHHHHHHCC--------CEEEEECCHHHHHH
Q ss_conf             78873------22----369999999-9865987856888874176324899999779--------80999632999999
Q gi|254781011|r  133 EDLVT------LG----NSMFEFVKV-IRDSGGIIQDGIGLFFYDIFPEVPARFRENN--------IKLHYLATWNDILT  193 (228)
Q Consensus       133 DDviT------tG----~S~~~~i~~-l~~~g~~V~~~~vii~~~~~~~~~~~l~~~g--------i~~~sl~t~~~il~  193 (228)
                      ||+=+      -|    -.++.+... |++..-+=...+++-    .....+.|++.+        +.+-.+.+.+++.+
T Consensus       605 DdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~----TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~  680 (744)
T KOG0741         605 DDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFG----TTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLE  680 (744)
T ss_pred             CCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE----CCCHHHHHHHCCHHHHHHHEEECCCCCCHHHHHH
T ss_conf             155656200246840357999999999524898884599996----2407999997277875111054675686478999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             99988899989999999999729
Q gi|254781011|r  194 IAEKLKIFNHDVLEEVRCFLDNP  216 (228)
Q Consensus       194 ~l~~~~~I~~~~~~~I~~~l~dP  216 (228)
                      ++.+.+.+++++...+.+-+.+-
T Consensus       681 vl~~~n~fsd~~~~~~~~~~~~~  703 (744)
T KOG0741         681 VLEELNIFSDDEVRAIAEQLLSK  703 (744)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHCC
T ss_conf             99971667841467899987422


No 181
>pfam11000 DUF2840 Protein of unknown function (DUF2840). This bacterial family of proteins have no known function.
Probab=26.84  E-value=39  Score=15.24  Aligned_cols=62  Identities=18%  Similarity=0.189  Sum_probs=40.2

Q ss_pred             HCCCCEEEEECCCCCCHHH-HHHH-------H-------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             1587178763156420110-0133-------1-------03733414408788732236999999998659878568
Q gi|254781011|r   98 RLNLPMIYVRKKSKKHGQK-SQIE-------G-------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG  159 (228)
Q Consensus        98 ~l~~p~~~vRK~~K~hG~~-~~iE-------G-------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~  159 (228)
                      .-+--|+|+|-.+-+||+- .++.       |       -+.+|..+|+=-|==..=..++++|++++..|....++
T Consensus        38 ~PgavFafvRWaaNd~GTv~srldI~rA~~pge~~qt~P~V~PG~~iLLr~~Gw~kV~~VL~~IDaiEalGidp~dv  114 (149)
T pfam11000        38 APGAVFAFVRWAANDFGTVVSRIDILRAVTPGEAYQTLPFVRPGGEILLRIEGWPKVERVLQAIDAIEALGIDPADV  114 (149)
T ss_pred             CCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf             79978999997317865565545200106899864238861774304674358688999999876999839894663


No 182
>pfam09756 DDRGK DDRGK domain. This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif.
Probab=26.67  E-value=50  Score=14.52  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             CCCCCEEEHHHHHHH-HHHHHHHHHHHHH--CCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCC
Q ss_conf             733414408788732-2369999999986--5987856888874176324899999779809996329999999998889
Q gi|254781011|r  124 FKGARVLVIEDLVTL-GNSMFEFVKVIRD--SGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKI  200 (228)
Q Consensus       124 ~~g~~vliVDDviTt-G~S~~~~i~~l~~--~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~  200 (228)
                      .+..+|+++||+... |-+.-.+|+.|+.  .-+.+.||  +-||+            .+=+.|---|..|..|+...|.
T Consensus       109 Ik~~Kvv~ledLa~~F~l~t~d~i~rI~~Le~~g~i~GV--~DDRG------------KfIyIs~eE~~ava~fI~~rGR  174 (189)
T pfam09756       109 IKLKKVVNLEELSAEFGLKTEDVIERIQDLEAQGSITGV--IDDRG------------KYIYISPEELEAVASFINKRGR  174 (189)
T ss_pred             HHHCCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEE--ECCCC------------CEEEECHHHHHHHHHHHHHCCC
T ss_conf             987765319999988199689999999999987973104--65888------------8688669999999999998697


Q ss_pred             CCHHHHHHH
Q ss_conf             998999999
Q gi|254781011|r  201 FNHDVLEEV  209 (228)
Q Consensus       201 I~~~~~~~I  209 (228)
                      +|-.++...
T Consensus       175 Vsi~eL~~~  183 (189)
T pfam09756       175 VSISELAEI  183 (189)
T ss_pred             EEHHHHHHH
T ss_conf             609999998


No 183
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=26.41  E-value=51  Score=14.49  Aligned_cols=75  Identities=15%  Similarity=0.195  Sum_probs=32.2

Q ss_pred             EEEEECCCHHHHHH-HHHHHCCCCE-EEEECCC-----CCCHHHH--HH--------H--HCCCCCCCEEEHHHHHHHHH
Q ss_conf             89982231257889-9985158717-8763156-----4201100--13--------3--10373341440878873223
Q gi|254781011|r   80 IIAGGETAGIPFAT-LLAERLNLPM-IYVRKKS-----KKHGQKS--QI--------E--GHLFKGARVLVIEDLVTLGN  140 (228)
Q Consensus        80 ~I~G~a~~Gip~a~-~iA~~l~~p~-~~vRK~~-----K~hG~~~--~i--------E--G~~~~g~~vliVDDviTtG~  140 (228)
                      +++-.+.||+-+++ -+|...+... ..+|.+.     |.+|-..  .+        +  -....|+.+=+|=|.+ .|.
T Consensus       108 VlI~gg~G~vG~~aiqlak~~Ga~Vi~t~~s~~k~~~~~~lG~~~~~v~~~~~~~~~~~v~~~t~g~gvDvv~d~v-gg~  186 (288)
T smart00829      108 VLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSL-AGE  186 (288)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEECC-CHH
T ss_conf             9997898677799999999739830034088899999997699960762179950999999870898827999898-689


Q ss_pred             HHHHHHHHHHHCCCE
Q ss_conf             699999999865987
Q gi|254781011|r  141 SMFEFVKVIRDSGGI  155 (228)
Q Consensus       141 S~~~~i~~l~~~g~~  155 (228)
                      +..++++.|+..|--
T Consensus       187 ~~~~~~~~l~~~G~~  201 (288)
T smart00829      187 FLDASLRCLAPGGRF  201 (288)
T ss_pred             HHHHHHHHHCCCCEE
T ss_conf             999999975369889


No 184
>TIGR01426 MGT glycosyltransferase, MGT family; InterPro: IPR006326   These sequences belong to the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. ; GO: 0016758 transferase activity transferring hexosyl groups, 0016999 antibiotic metabolic process.
Probab=26.00  E-value=52  Score=14.44  Aligned_cols=53  Identities=13%  Similarity=0.084  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEE
Q ss_conf             57989999999999998664217566678998223125788999851587178
Q gi|254781011|r   52 ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI  104 (228)
Q Consensus        52 ~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~  104 (228)
                      +.-++.+-..+..+...+.+....+++|+|+=-...-+-.|.++|.++++|.+
T Consensus        74 ~~~~~~ll~~~~~~Lp~l~~~~~~d~pDlv~yD~a~~l~~G~llA~~l~~P~i  126 (429)
T TIGR01426        74 LDIIEKLLDESLSLLPQLEEAYKGDRPDLVVYDIATPLWAGRLLARKLDVPVI  126 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCEE
T ss_conf             89999999999999999999714899878985313156899998765078868


No 185
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=25.64  E-value=53  Score=14.40  Aligned_cols=58  Identities=14%  Similarity=0.122  Sum_probs=38.4

Q ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHC
Q ss_conf             414408788732236999999998659878568888741763248999997798099963299999999988
Q gi|254781011|r  127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKL  198 (228)
Q Consensus       127 ~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~  198 (228)
                      ++|++|+|-..       -+++-+++|..++++    .++  ..+.+.|++.+- -+-+-++.||++.+.+.
T Consensus       156 ~e~l~VGDs~~-------Di~aA~~aG~~~i~v----~~g--~~~~~~l~~~~a-d~vi~~~~eL~~il~~l  213 (214)
T PRK13288        156 EEALMVGDNYH-------DILAGKNAGTKTAGV----AWT--IKGREYLEQYKP-DFMLDKMSDLLAIVGDL  213 (214)
T ss_pred             CCEEEEECCHH-------HHHHHHHCCCEEEEE----ECC--CCCHHHHHHCCC-CEEECCHHHHHHHHHHC
T ss_conf             86899968989-------999999959959999----389--998767976899-99989999999999861


No 186
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology.  The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.63  E-value=53  Score=14.40  Aligned_cols=28  Identities=25%  Similarity=0.380  Sum_probs=15.9

Q ss_pred             CCCCEEEEECCCHHH-HH-HHHHHHCCCCEEE
Q ss_conf             666789982231257-88-9998515871787
Q gi|254781011|r   76 ESIDIIAGGETAGIP-FA-TLLAERLNLPMIY  105 (228)
Q Consensus        76 ~~~d~I~G~a~~Gip-~a-~~iA~~l~~p~~~  105 (228)
                      .++|+|+|  +||-+ +. ...|..+++|.+.
T Consensus        88 ~kPd~vi~--~GGY~s~P~~laA~~~~iP~~i  117 (350)
T cd03785          88 FKPDVVVG--FGGYVSGPVGLAAKLLGIPLVI  117 (350)
T ss_pred             CCCCEEEE--CCCCHHHHHHHHHHHCCCCCEE
T ss_conf             49999998--8981038999999972998556


No 187
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=25.57  E-value=53  Score=14.39  Aligned_cols=62  Identities=19%  Similarity=0.188  Sum_probs=46.3

Q ss_pred             CCCCCEEEHHHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEE
Q ss_conf             7334144087887322369999999986---5987856888874176324899999779809996
Q gi|254781011|r  124 FKGARVLVIEDLVTLGNSMFEFVKVIRD---SGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYL  185 (228)
Q Consensus       124 ~~g~~vliVDDviTtG~S~~~~i~~l~~---~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl  185 (228)
                      ..|+.|-+|+-+-.+...+.+..+.|+.   .|+.|.+-.+.+.=|..+...+.|++.|+++..+
T Consensus        34 r~GK~VTvI~Gl~~~~~~lk~lak~LK~~~g~GGtvK~g~IeiQGD~r~ki~~~L~~~G~~v~~I   98 (99)
T PRK00939         34 RYGKEVTIIEGIDPKEIDLKELAKKLKSKLACGGTVKNGRIELQGDHRDRVKELLIEMGFSEENI   98 (99)
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEECCEEEECCCHHHHHHHHHHHCCCCCCCC
T ss_conf             79987899758979989999999999897556962739999978826999999999869982022


No 188
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=25.52  E-value=41  Score=15.10  Aligned_cols=16  Identities=25%  Similarity=0.196  Sum_probs=7.8

Q ss_pred             CEEEEECCCHHHHHHHH
Q ss_conf             78998223125788999
Q gi|254781011|r   79 DIIAGGETAGIPFATLL   95 (228)
Q Consensus        79 d~I~G~a~~Gip~a~~i   95 (228)
                      ..|+.+ +.|+++...-
T Consensus        87 ~~vISi-~AGi~i~~l~  102 (255)
T PRK06476         87 QTVISV-IAATTRAALL  102 (255)
T ss_pred             CEEEEE-CCCCCHHHHH
T ss_conf             789997-3787799999


No 189
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.41  E-value=53  Score=14.37  Aligned_cols=43  Identities=12%  Similarity=0.193  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEEEECC-----------CCHHHHHHHHHCCCEE
Q ss_conf             369999999986598785688887417-----------6324899999779809
Q gi|254781011|r  140 NSMFEFVKVIRDSGGIIQDGIGLFFYD-----------IFPEVPARFRENNIKL  182 (228)
Q Consensus       140 ~S~~~~i~~l~~~g~~V~~~~vii~~~-----------~~~~~~~~l~~~gi~~  182 (228)
                      |++.+..+.|.++|.++.-+.+.+.+.           -.+.+.+.|++.|+++
T Consensus        11 GgL~~il~~L~~~~INIeY~Yaf~~~~~~~a~lI~r~~d~e~a~~~L~~~g~~~   64 (65)
T cd04882          11 GGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQERGVEL   64 (65)
T ss_pred             CHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHCCCEE
T ss_conf             719999999988798879999994378976899998199999999999867678


No 190
>PRK10693 response regulator of RpoS; Provisional
Probab=25.23  E-value=54  Score=14.35  Aligned_cols=30  Identities=17%  Similarity=0.341  Sum_probs=14.4

Q ss_pred             CCCEEEE----ECCCHHHHHHHHHH-HCCCCEEEE
Q ss_conf             6678998----22312578899985-158717876
Q gi|254781011|r   77 SIDIIAG----GETAGIPFATLLAE-RLNLPMIYV  106 (228)
Q Consensus        77 ~~d~I~G----~a~~Gip~a~~iA~-~l~~p~~~v  106 (228)
                      .+|.|.-    |.+.|+-+...+-. ....|.+++
T Consensus        51 ~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIvl   85 (337)
T PRK10693         51 TPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLVI   85 (337)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             99999996899999989999999985899649999


No 191
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=25.16  E-value=54  Score=14.34  Aligned_cols=86  Identities=9%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHH--HHHHHHHCC-CC
Q ss_conf             334144087887322369999999986598785688887417632489999977980999632999--999999888-99
Q gi|254781011|r  125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWND--ILTIAEKLK-IF  201 (228)
Q Consensus       125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~--il~~l~~~~-~I  201 (228)
                      ...+++||||.-..=...-++++.|++.|..-. ++.|.+ +.  ...-.++..|++-..+++.++  +.+.+.... .|
T Consensus       118 ~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~-~LiV~~-~~--~~nl~~a~rNi~~v~v~~~~~lnv~dLl~~~~lvi  193 (206)
T PRK05319        118 REGRLVVVDDFSLEAPKTKELAAKLKNLGLEDK-VLIVTD-EV--DENLYLSARNLPNVDVLPADGLNVYDLLRADKVVI  193 (206)
T ss_pred             HCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCC-EEEEEC-CC--CHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEE
T ss_conf             538859972576667788999999997799875-379836-64--47899998287992587548810999857995998


Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             9899999999997
Q gi|254781011|r  202 NHDVLEEVRCFLD  214 (228)
Q Consensus       202 ~~~~~~~I~~~l~  214 (228)
                      +++-++.|++++.
T Consensus       194 t~~Al~~LeerLs  206 (206)
T PRK05319        194 TKAAVKKIEERLA  206 (206)
T ss_pred             EHHHHHHHHHHHC
T ss_conf             7899999999729


No 192
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=24.44  E-value=34  Score=15.66  Aligned_cols=66  Identities=14%  Similarity=0.192  Sum_probs=46.6

Q ss_pred             CCCCEEEHHH----HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH-HHHCCCEEEEECCHHHH
Q ss_conf             3341440878----8732236999999998659878568888741763248999-99779809996329999
Q gi|254781011|r  125 KGARVLVIED----LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR-FRENNIKLHYLATWNDI  191 (228)
Q Consensus       125 ~g~~vliVDD----viTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~-l~~~gi~~~sl~t~~~i  191 (228)
                      .-++|+||--    |.-.=..+.|..+.|++.|.+|.-.+-=+- +|.++-... |.+.+|++--+..++|+
T Consensus       302 ~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~g~~V~faIHPVA-GRMPGHMNVLLAEa~VpYd~~~emdei  372 (459)
T PRK09444        302 NSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA-GRLPGHMNVLLAEAKVPYDIVLEMDEI  372 (459)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCCCCEEEEEECCCCHHHHCCHHHH
T ss_conf             09949996680899998889999999999977985899836467-888864013665148988886598664


No 193
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=24.35  E-value=29  Score=16.08  Aligned_cols=86  Identities=15%  Similarity=0.236  Sum_probs=46.4

Q ss_pred             EEEEECCCH-HHHHHHHHHHCCCCEEEEEC----C-C-------CCCHHHHH--HHH----CCCCCCCEEEHHHHHHHHH
Q ss_conf             899822312-57889998515871787631----5-6-------42011001--331----0373341440878873223
Q gi|254781011|r   80 IIAGGETAG-IPFATLLAERLNLPMIYVRK----K-S-------KKHGQKSQ--IEG----HLFKGARVLVIEDLVTLGN  140 (228)
Q Consensus        80 ~I~G~a~~G-ip~a~~iA~~l~~p~~~vRK----~-~-------K~hG~~~~--iEG----~~~~g~~vliVDDviTtG~  140 (228)
                      +++|....| -.+|-.+|..++.||+=.-.    . .       +.+|....  +|-    .+.. .+     -|++|||
T Consensus         6 ~LiG~mGsGKstiGk~LA~~L~~~fiD~D~~Ie~~~g~sI~eif~~~Ge~~FR~~E~~~l~~l~~-~~-----~VIstGG   79 (172)
T PRK03731          6 FLVGPRGCGKTTVGMALAQALGYRFVDTDLWLQSTLQMTVAEIVEREGWAGFRARESAALEAVTA-PS-----TVVATGG   79 (172)
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHCC-CC-----EEEEECC
T ss_conf             99889999889999999998599979786999988398999999983989999999999998427-88-----2898078


Q ss_pred             HHH---HHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHH
Q ss_conf             699---9999998659878568888741763248999997
Q gi|254781011|r  141 SMF---EFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRE  177 (228)
Q Consensus       141 S~~---~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~  177 (228)
                      .+.   +..+.|++.|.     ++.++.+ ++.-.+++..
T Consensus        80 G~v~~~~n~~~L~~~g~-----vv~L~~~-~~~l~~Rl~~  113 (172)
T PRK03731         80 GIILTEENRAFMRNNGI-----VIYLCAP-VSVLANRLEA  113 (172)
T ss_pred             CCCCCHHHHHHHHHCCE-----EEEEECC-HHHHHHHHHC
T ss_conf             64268999999996899-----9999799-9999999813


No 194
>PRK08508 biotin synthase; Provisional
Probab=24.31  E-value=30  Score=15.97  Aligned_cols=14  Identities=14%  Similarity=0.202  Sum_probs=6.5

Q ss_pred             HHHHHHHHHCCCEE
Q ss_conf             99999998659878
Q gi|254781011|r  143 FEFVKVIRDSGGII  156 (228)
Q Consensus       143 ~~~i~~l~~~g~~V  156 (228)
                      +++++.++++|.+|
T Consensus       140 l~tl~~~k~aGl~v  153 (279)
T PRK08508        140 FQTCLNAKEAGLGL  153 (279)
T ss_pred             HHHHHHHHHCCCEE
T ss_conf             99999999819948


No 195
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=24.26  E-value=56  Score=14.24  Aligned_cols=62  Identities=15%  Similarity=0.053  Sum_probs=34.6

Q ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC-CHHHHHHHHHHHCCCCE
Q ss_conf             640142621357989999999999998664217566678998223-12578899985158717
Q gi|254781011|r   42 SPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGET-AGIPFATLLAERLNLPM  103 (228)
Q Consensus        42 Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~-~Gip~a~~iA~~l~~p~  103 (228)
                      ..+.+|+-.+...|.....+.+.+++.+.......+++.|..+++ .|=-++.-+|.+++.++
T Consensus        45 ~~~Gad~v~~~e~~~~~~~~~e~~~~~l~~l~~~~~p~~il~~aT~~Gk~la~rvAa~l~~~~  107 (313)
T COG2025          45 KAYGADKVLVAEGPELANYLPEPYADALVDLAKKYKPDVVLLPATTNGKELAPRVAARLDVGL  107 (313)
T ss_pred             HHCCCCEEEEECCCCHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             754987899961663200532589999999998469987997577636778999999808871


No 196
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=24.23  E-value=56  Score=14.23  Aligned_cols=66  Identities=14%  Similarity=0.188  Sum_probs=33.4

Q ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHHCCCE-----EEEE-----------------EEEEECC--CCHHHHHHHHHCCCEE
Q ss_conf             41440878873223699999999865987-----8568-----------------8887417--6324899999779809
Q gi|254781011|r  127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGI-----IQDG-----------------IGLFFYD--IFPEVPARFRENNIKL  182 (228)
Q Consensus       127 ~~vliVDDviTtG~S~~~~i~~l~~~g~~-----V~~~-----------------~vii~~~--~~~~~~~~l~~~gi~~  182 (228)
                      -++++--|+.   ||+.+....|++.+..     |...                 ++|+.++  -.+.+.+..+..|+++
T Consensus       307 ~~viiKaDt~---GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~as~avIigFnV~~~~~a~~~ae~~~V~I  383 (509)
T COG0532         307 LNVILKADTQ---GSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIGFNVRVDPEARRLAESEGVKI  383 (509)
T ss_pred             EEEEEEECCC---CHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCE
T ss_conf             0479997066---6199999999852797606889986048977326888873398799972577889999987469857


Q ss_pred             EEECCHHHHHHHH
Q ss_conf             9963299999999
Q gi|254781011|r  183 HYLATWNDILTIA  195 (228)
Q Consensus       183 ~sl~t~~~il~~l  195 (228)
                      .+---+..+++.+
T Consensus       384 ~~~~iIY~lied~  396 (509)
T COG0532         384 RYYDVIYKLIEDV  396 (509)
T ss_pred             EECCHHHHHHHHH
T ss_conf             8816499999999


No 197
>KOG3209 consensus
Probab=24.07  E-value=56  Score=14.21  Aligned_cols=58  Identities=28%  Similarity=0.438  Sum_probs=36.4

Q ss_pred             EEEECCCCCC-------------HHHHHHHH-------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             8763156420-------------11001331-------037334144087887322369999999986598785688887
Q gi|254781011|r  104 IYVRKKSKKH-------------GQKSQIEG-------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus       104 ~~vRK~~K~h-------------G~~~~iEG-------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii  163 (228)
                      ++-|||.-+|             |.++.|||       .++-|+|++-|.-.--.--|--..|.+|+++|..|.  +.|+
T Consensus       758 ~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVt--LtIi  835 (984)
T KOG3209         758 VLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVT--LTII  835 (984)
T ss_pred             EEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCEEEECCCCHHHHHHHHHCCCEEE--EEEC
T ss_conf             98604677602899843668987743125698167505543265688754703303672568888873685589--9974


No 198
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=23.94  E-value=57  Score=14.20  Aligned_cols=93  Identities=13%  Similarity=0.113  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCHH-HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCC-CCCCEEEHHHHHHH
Q ss_conf             99999998664217566678998223125-78899985158717876315642011001331037-33414408788732
Q gi|254781011|r   61 IMDLTAKTVLRNIGFESIDIIAGGETAGI-PFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLF-KGARVLVIEDLVTL  138 (228)
Q Consensus        61 i~~~~~~~i~~~~~~~~~d~I~G~a~~Gi-p~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~-~g~~vliVDDviTt  138 (228)
                      +++.+++.+.+.    +++.|+|++-+++ |+-..+...-++.++..|-|.-   -.-.-+|.-. .|+--++   ++|+
T Consensus         2 va~~l~~~L~~~----Gv~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~---A~~mA~gyar~tg~~gv~---~~t~   71 (164)
T cd07039           2 VADVIVETLENW----GVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEA---AAFAASAEAKLTGKLGVC---LGSS   71 (164)
T ss_pred             HHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCHHH---HHHHHHHHHHHHCCCEEE---EEEC
T ss_conf             899999999987----999999917835799999998659973995487899---999999999997998799---9842


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             2369999999986598785688887
Q gi|254781011|r  139 GNSMFEFVKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus       139 G~S~~~~i~~l~~~g~~V~~~~vii  163 (228)
                      |-....++..|-++-..-.-+++|.
T Consensus        72 GpG~tN~~~gl~~A~~~~~Pll~i~   96 (164)
T cd07039          72 GPGAIHLLNGLYDAKRDRAPVLAIA   96 (164)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             8238889999999998589779996


No 199
>TIGR00070 hisG ATP phosphoribosyltransferase; InterPro: IPR001348   ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions .  ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate  Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides.   This entry represents the two forms of ATP phosphoribosyltransferase: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity .   The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined , . The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplamsic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process.
Probab=23.84  E-value=46  Score=14.77  Aligned_cols=19  Identities=37%  Similarity=0.503  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             88732236999999998659878568
Q gi|254781011|r  134 DLVTLGNSMFEFVKVIRDSGGIIQDG  159 (228)
Q Consensus       134 DviTtG~S~~~~i~~l~~~g~~V~~~  159 (228)
                      |+++||.|       ||.+|+.+++.
T Consensus       183 DLvstG~T-------L~~NgL~~id~  201 (317)
T TIGR00070       183 DLVSTGTT-------LRENGLREIDV  201 (317)
T ss_pred             EEECCHHH-------HHHCCCEEEEE
T ss_conf             42111278-------97539688988


No 200
>pfam08679 DsrD Dissimilatory sulfite reductase D (DsrD). The structure of the DsrD protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins. The structure suggests a possible role for DsrD in transcription of translation of genes which catalyse dissimilatory sulfite reduction.
Probab=23.72  E-value=51  Score=14.47  Aligned_cols=31  Identities=19%  Similarity=0.210  Sum_probs=17.4

Q ss_pred             EECCCCCCEEEE-CCCCC--CCHHHHHHHHHHHH
Q ss_conf             311872640142-62135--79899999999999
Q gi|254781011|r   36 LTSGIVSPLYID-CRKLI--SFVRARSMIMDLTA   66 (228)
Q Consensus        36 L~SG~~Sp~Y~d-~r~~~--s~P~~~~~i~~~~~   66 (228)
                      .+++.+|++||. ...++  .-|....+++..++
T Consensus        10 ~k~~~KskfYf~D~~k~~Pd~K~RevKKi~~~LV   43 (65)
T pfam08679        10 AKNGKKTKFYFKDFYKAIPDAKPREVKKIVNELV   43 (65)
T ss_pred             HHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             9728878520877998787526899999999985


No 201
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=23.54  E-value=58  Score=14.15  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=17.4

Q ss_pred             HCCCCCCCEEEHHHHHHHH------HHHHHHHHHH-HHCCCEEE
Q ss_conf             1037334144087887322------3699999999-86598785
Q gi|254781011|r  121 GHLFKGARVLVIEDLVTLG------NSMFEFVKVI-RDSGGIIQ  157 (228)
Q Consensus       121 G~~~~g~~vliVDDviTtG------~S~~~~i~~l-~~~g~~V~  157 (228)
                      ..+...-++++.|.- |+|      ..+++.++.+ ++.|..|.
T Consensus       158 ~aLa~~P~iLilDEP-Ts~LDp~~~~~i~~~l~~l~~e~g~Tii  200 (281)
T PRK13633        158 GILAMRPECIIFDEP-TAMLDPSGRREVVNTIKELNKKYGITII  200 (281)
T ss_pred             HHHHCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             999859999998187-3438989999999999999984098999


No 202
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=23.39  E-value=39  Score=15.28  Aligned_cols=14  Identities=0%  Similarity=-0.175  Sum_probs=6.7

Q ss_pred             CCCHHHHHHHHHHH
Q ss_conf             57989999999999
Q gi|254781011|r   52 ISFVRARSMIMDLT   65 (228)
Q Consensus        52 ~s~P~~~~~i~~~~   65 (228)
                      ---|.....+.+.+
T Consensus        69 aVKP~~~~~vl~~l   82 (267)
T PRK11880         69 AVKPQVMEDVLSEL   82 (267)
T ss_pred             EECHHHHHHHHHHH
T ss_conf             72878999999998


No 203
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188   This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=23.18  E-value=59  Score=14.10  Aligned_cols=121  Identities=15%  Similarity=0.076  Sum_probs=72.4

Q ss_pred             CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHH---HHHHH---HCCCCCCCEEE------------------
Q ss_conf             6667899822312578899985158717876315642011---00133---10373341440------------------
Q gi|254781011|r   76 ESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ---KSQIE---GHLFKGARVLV------------------  131 (228)
Q Consensus        76 ~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~---~~~iE---G~~~~g~~vli------------------  131 (228)
                      ++=|+++=++|++|-+==++|..=+.+.  +|+-|===|-   +-.++   ..|.+||+||+                  
T Consensus        27 p~GdVli~V~YSs~NYKDALA~tg~g~v--~R~yP~~PGID~aG~Vv~S~dp~F~~GD~VivTGyglG~~H~GGysqyaR  104 (330)
T TIGR02823        27 PEGDVLIKVAYSSLNYKDALAITGKGGV--VRSYPMIPGIDLAGTVVSSEDPRFRPGDEVIVTGYGLGVSHDGGYSQYAR  104 (330)
T ss_pred             CCCCEEEEEEECCCCHHHHHEECCCCCE--EEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEE
T ss_conf             8997399999868763033101387976--88778768817546898448877578871899740245651576223567


Q ss_pred             --------------HHHHH---HHHHHHHHHHHHHHHCC-CEEEEEEEEEECCCCHH----HHHHHHHCCCEEEEECCHH
Q ss_conf             --------------87887---32236999999998659-87856888874176324----8999997798099963299
Q gi|254781011|r  132 --------------IEDLV---TLGNSMFEFVKVIRDSG-GIIQDGIGLFFYDIFPE----VPARFRENNIKLHYLATWN  189 (228)
Q Consensus       132 --------------VDDvi---TtG~S~~~~i~~l~~~g-~~V~~~~vii~~~~~~~----~~~~l~~~gi~~~sl~t~~  189 (228)
                                    .-+-+   |.|=|+-=+|.+|+++| .....-=|++. +-.-+    |-.-|++.|++++..+-=.
T Consensus       105 Vp~dWlVpLP~glsl~eAM~~GTAGfTAaL~V~aLe~~Gl~~P~~GpVlVT-GAtGGVGS~Av~~L~~lGY~V~A~tGk~  183 (330)
T TIGR02823       105 VPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLLTPEDGPVLVT-GATGGVGSLAVAILSKLGYEVVASTGKA  183 (330)
T ss_pred             ECHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE-CCCCCHHHHHHHHHHHCCCEEEEEECCH
T ss_conf             332310158898898899986007789999999999726888888878870-6778778999999983797699973783


Q ss_pred             HHH-HHHHHCC
Q ss_conf             999-9999888
Q gi|254781011|r  190 DIL-TIAEKLK  199 (228)
Q Consensus       190 ~il-~~l~~~~  199 (228)
                      +-- ++|++.|
T Consensus       184 ~~~~~yL~~LG  194 (330)
T TIGR02823       184 EEEVEYLKELG  194 (330)
T ss_pred             HHHHHHHHHCC
T ss_conf             77889998658


No 204
>pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
Probab=23.16  E-value=57  Score=14.17  Aligned_cols=10  Identities=20%  Similarity=0.468  Sum_probs=4.4

Q ss_pred             CCEEEEECCH
Q ss_conf             9809996329
Q gi|254781011|r  179 NIKLHYLATW  188 (228)
Q Consensus       179 gi~~~sl~t~  188 (228)
                      .|-+||++.|
T Consensus       190 DivvhS~TKy  199 (381)
T pfam01053       190 DIVVHSATKY  199 (381)
T ss_pred             CEEEEECCCC
T ss_conf             7799753430


No 205
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=23.14  E-value=55  Score=14.27  Aligned_cols=88  Identities=14%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             CCEEEHHHHHHHHHHHHHHH-HHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCCCCCH
Q ss_conf             41440878873223699999-9998659878568888741763248999997798099963--29999999998889998
Q gi|254781011|r  127 ARVLVIEDLVTLGNSMFEFV-KVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLA--TWNDILTIAEKLKIFNH  203 (228)
Q Consensus       127 ~~vliVDDviTtG~S~~~~i-~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~--t~~~il~~l~~~~~I~~  203 (228)
                      .-++.|+++..|||..+.+. +.|--....++|-+-++.  ....-.+.+++.||+...+.  .+.++++....   ..+
T Consensus       130 PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~--~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~---~t~  204 (317)
T COG0616         130 PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVIS--GAPNFEELLEKLGVEKEVITAGEYKDILSPFRP---LTE  204 (317)
T ss_pred             CEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCCCCEEE--ECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCC---CCH
T ss_conf             899998873202899998407879877986021350177--456689999865986034423242111453333---698


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999999729977
Q gi|254781011|r  204 DVLEEVRCFLDNPMQW  219 (228)
Q Consensus       204 ~~~~~I~~~l~dP~~W  219 (228)
                      ++.+.+++..+.-..|
T Consensus       205 e~~~~~q~~~~e~y~~  220 (317)
T COG0616         205 EEREILQKEIDETYDE  220 (317)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999999


No 206
>pfam10761 DUF2590 Protein of unknown function (DUF2590). This family of proteins has no known function.
Probab=22.83  E-value=59  Score=14.06  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=17.8

Q ss_pred             CCCCEEEECCCCCCEEEECCCCC
Q ss_conf             78986731187264014262135
Q gi|254781011|r   30 PENPYHLTSGIVSPLYIDCRKLI   52 (228)
Q Consensus        30 ~~g~F~L~SG~~Sp~Y~d~r~~~   52 (228)
                      .+|+|+|-+|. .|.+|+.|..+
T Consensus         6 ~dgD~~Ldag~-~P~l~~~r~sI   27 (103)
T pfam10761         6 IDGDLVLDAGG-QPVLLSDRASI   27 (103)
T ss_pred             ECCCEEECCCC-CCEEECCHHHH
T ss_conf             67998687999-91784171678


No 207
>PRK11778 putative periplasmic protease; Provisional
Probab=22.77  E-value=17  Score=17.53  Aligned_cols=86  Identities=16%  Similarity=0.204  Sum_probs=55.6

Q ss_pred             EEEHHHHHHHHHHHHHH-HHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCCHHH
Q ss_conf             44087887322369999-9999865987856888874176324899999779809996329--99999999888999899
Q gi|254781011|r  129 VLVIEDLVTLGNSMFEF-VKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATW--NDILTIAEKLKIFNHDV  205 (228)
Q Consensus       129 vliVDDviTtG~S~~~~-i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~--~~il~~l~~~~~I~~~~  205 (228)
                      ++-||.|..|||=...+ .+.|=.+...++|.+.++  ...+.-.+.++++||++..+.+-  .+.+...   +-.++++
T Consensus       137 tv~vd~VAASGGY~mAc~ADkIvA~P~tItGSIGVi--a~~Pnf~~lLkK~GI~~e~~taG~~K~tlt~f---~e~T~e~  211 (317)
T PRK11778        137 TVCVDKVAASGGYMMACVADKIIAAPFAIVGSIGVV--AQIPNFHRLLKKHDIDFELHTAGEYKRTLTLF---GENTEEG  211 (317)
T ss_pred             EEEEEEEECCCCEEEEECCCEEEECCCCEEEEEEEE--EECCCHHHHHHHCCCCEEEEECCCCCCCCCCC---CCCCHHH
T ss_conf             999701302430226521887998786346532101--66658899999859965998145677777888---9999999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999729977
Q gi|254781011|r  206 LEEVRCFLDNPMQW  219 (228)
Q Consensus       206 ~~~I~~~l~dP~~W  219 (228)
                      .+.+++-+++-..+
T Consensus       212 r~k~q~~le~~h~~  225 (317)
T PRK11778        212 REKFREELEETHQL  225 (317)
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999999999999


No 208
>PRK13938 phosphoheptose isomerase; Provisional
Probab=22.71  E-value=60  Score=14.04  Aligned_cols=97  Identities=21%  Similarity=0.195  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCC----------------CCCHH---
Q ss_conf             89999999999998664217566678998223125788999851587178763156----------------42011---
Q gi|254781011|r   55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKS----------------KKHGQ---  115 (228)
Q Consensus        55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~----------------K~hG~---  115 (228)
                      ++....+++.+.+.+.+..   + =.++|- -|.=..|.-+|..+-..|...|+.-                -|+|-   
T Consensus        28 ~~~i~~~~~~i~~~~~~g~---k-I~~cGN-GGSaa~A~Hfa~el~~~~~~~R~~lpaiaL~~n~s~lTAiaND~gye~v  102 (196)
T PRK13938         28 LEAARAIGDRLIAGYRAGA---R-VFMCGN-GGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTV  102 (196)
T ss_pred             HHHHHHHHHHHHHHHHCCC---E-EEEEEC-CHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCCCHHHH
T ss_conf             9999999999999998799---8-999968-6889999999999863335789984745447880788887624789999


Q ss_pred             -HHHHHHCCCCCCCEEEHHHHHHHHHH--HHHHHHHHHHCCCEEEEE
Q ss_conf             -00133103733414408788732236--999999998659878568
Q gi|254781011|r  116 -KSQIEGHLFKGARVLVIEDLVTLGNS--MFEFVKVIRDSGGIIQDG  159 (228)
Q Consensus       116 -~~~iEG~~~~g~~vliVDDviTtG~S--~~~~i~~l~~~g~~V~~~  159 (228)
                       .+|++..-.+|+=++.+   -|+|.|  ++++++.-++.|..+++.
T Consensus       103 F~rQl~al~~~gDvLi~i---StSGnS~NIi~A~~~Ak~~g~~~i~l  146 (196)
T PRK13938        103 FARALEGSARPGDTLFAI---STSGNSMSVLRAAKTARELGVTVVAM  146 (196)
T ss_pred             HHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             999999716899989997---79999999999999999879989999


No 209
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=22.51  E-value=24  Score=16.63  Aligned_cols=31  Identities=19%  Similarity=0.312  Sum_probs=18.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHCCCCCCCEE
Q ss_conf             8717876315642011001331037334144
Q gi|254781011|r  100 NLPMIYVRKKSKKHGQKSQIEGHLFKGARVL  130 (228)
Q Consensus       100 ~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vl  130 (228)
                      .+-|+++|++.|..=+....-..+.+|++|+
T Consensus        14 ~~~ffmiRpQkK~qke~q~ml~~L~kGdeVv   44 (120)
T PRK06531         14 GLIFFMQRQQKKQAQERQNQLNAIQKGDEVV   44 (120)
T ss_pred             HHHHHEECHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             9998603748899999999997257999899


No 210
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=22.39  E-value=61  Score=14.00  Aligned_cols=18  Identities=17%  Similarity=0.407  Sum_probs=8.4

Q ss_pred             CCCEEEEECCHHHHHHHH
Q ss_conf             798099963299999999
Q gi|254781011|r  178 NNIKLHYLATWNDILTIA  195 (228)
Q Consensus       178 ~gi~~~sl~t~~~il~~l  195 (228)
                      +|++...+-+.+||-+.+
T Consensus       495 ~G~~~~~v~~~~eL~~al  512 (548)
T PRK07449        495 YGLEYHRPETWAELEEAL  512 (548)
T ss_pred             CCCEEEEECCHHHHHHHH
T ss_conf             799399859999999999


No 211
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).  This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=22.16  E-value=57  Score=14.20  Aligned_cols=66  Identities=18%  Similarity=0.180  Sum_probs=36.9

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH--H-HHCCCEEEEEC---CHHHHHHH
Q ss_conf             33414408788732236999999998659878568888741763248999--9-97798099963---29999999
Q gi|254781011|r  125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR--F-RENNIKLHYLA---TWNDILTI  194 (228)
Q Consensus       125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~--l-~~~gi~~~sl~---t~~~il~~  194 (228)
                      |. .+++|-| .|||.+.++-++.-.++ ..+.|+ ++.--|...-|--.  + .+.++|+..+=   .++||..|
T Consensus       203 P~-e~lLVlD-At~Gqna~~QA~~F~ea-v~ltGi-iLTKLDg~AKGG~~l~i~~~l~~Pv~~~G~GE~~dDL~~F  274 (284)
T TIGR00064       203 PD-EVLLVLD-ATTGQNALEQAKVFNEA-VGLTGI-ILTKLDGTAKGGIILAIAYELKLPVKFIGVGEKIDDLAPF  274 (284)
T ss_pred             CC-EEEEEEH-HHHHHHHHHHHHHHHHH-CCCCEE-EEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC
T ss_conf             75-5754220-22203089999998654-068858-9963468803789998899857976998548873320147


No 212
>pfam01012 ETF Electron transfer flavoprotein domain. This family includes the homologous domain shared between the alpha and beta subunits of the electron transfer flavoprotein.
Probab=22.16  E-value=61  Score=13.97  Aligned_cols=39  Identities=28%  Similarity=0.405  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEE-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             99999986642175666789982-23125788999851587178
Q gi|254781011|r   62 MDLTAKTVLRNIGFESIDIIAGG-ETAGIPFATLLAERLNLPMI  104 (228)
Q Consensus        62 ~~~~~~~i~~~~~~~~~d~I~G~-a~~Gip~a~~iA~~l~~p~~  104 (228)
                      .+.+++.+.+    .++|.|+.. ...|=-++..+|.+|+.|++
T Consensus        76 a~~l~~~i~~----~~~~~Vl~~~s~~g~~~~~rlA~~L~~~~v  115 (161)
T pfam01012        76 AAALAALIKK----EGPDLVLAGATSIGKDLAPRLAALLGAPLI  115 (161)
T ss_pred             HHHHHHHHHC----CCCCEEEECCHHHHHHHHHHHHHHHCCCCC
T ss_conf             9999997541----399799970407876146999999599861


No 213
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.03  E-value=62  Score=13.96  Aligned_cols=61  Identities=13%  Similarity=0.075  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC-----CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHC
Q ss_conf             87322369999999986598785688887417-----63248999997798099963299999999988
Q gi|254781011|r  135 LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD-----IFPEVPARFRENNIKLHYLATWNDILTIAEKL  198 (228)
Q Consensus       135 viTtG~S~~~~i~~l~~~g~~V~~~~vii~~~-----~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~  198 (228)
                      |+.-.|-...++++.+-+|...++++|=+.-+     +.+...+--+++|++   +++++||++|-.+.
T Consensus       148 vl~R~GHTEasVdLa~lAGl~P~avicEil~~dG~ma~~~~l~~fA~~h~l~---~isi~dli~yR~~~  213 (218)
T PRK00910        148 VLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGKLHNMP---VLTIEDMVMYRNQF  213 (218)
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCC---EEEHHHHHHHHHHH
T ss_conf             8646876999999999829997599999835999826779999999982997---88899999999970


No 214
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2.  While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=21.95  E-value=62  Score=13.94  Aligned_cols=43  Identities=7%  Similarity=0.200  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCHH-HHHHHHHHHCCCCEEEEECC
Q ss_conf             9999998664217566678998223125-78899985158717876315
Q gi|254781011|r   62 MDLTAKTVLRNIGFESIDIIAGGETAGI-PFATLLAERLNLPMIYVRKK  109 (228)
Q Consensus        62 ~~~~~~~i~~~~~~~~~d~I~G~a~~Gi-p~a~~iA~~l~~p~~~vRK~  109 (228)
                      ...+|+++.+     ++-+|+||..... .....++..+++|++++|.+
T Consensus        52 ~~~~C~l~~~-----GV~AifGp~~~~s~~~vqSic~al~iPhi~~~~~   95 (363)
T cd06381          52 VQEACDLMNQ-----GILALVTSTGCASAIALQSLTDAMHIPHLFIQRG   95 (363)
T ss_pred             HHHHHHHHHC-----CCEEEECCCCHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             9999998744-----8169987886668999998751578872786326


No 215
>TIGR00739 yajC preprotein translocase, YajC subunit; InterPro: IPR003849   This entry describes proteins of unknown function..
Probab=21.86  E-value=21  Score=17.06  Aligned_cols=29  Identities=24%  Similarity=0.449  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHCCCCCCCEEE
Q ss_conf             78763156420110013310373341440
Q gi|254781011|r  103 MIYVRKKSKKHGQKSQIEGHLFKGARVLV  131 (228)
Q Consensus       103 ~~~vRK~~K~hG~~~~iEG~~~~g~~vli  131 (228)
                      |+..|++.|..=.++..--++.+|++|+.
T Consensus        18 Fl~~RPQ~K~~k~~~kl~~~L~KGd~V~T   46 (86)
T TIGR00739        18 FLIIRPQRKRRKAHKKLIESLKKGDKVLT   46 (86)
T ss_pred             HHHCCHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             97049779888988888852799778998


No 216
>CHL00189 infB translation initiation factor 2; Provisional
Probab=21.72  E-value=63  Score=13.92  Aligned_cols=84  Identities=15%  Similarity=0.204  Sum_probs=51.0

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE---CCCCHHHHHH---HHHCCCEEEEECCHHHHHHHHHHC
Q ss_conf             3341440878873223699999999865987856888874---1763248999---997798099963299999999988
Q gi|254781011|r  125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF---YDIFPEVPAR---FRENNIKLHYLATWNDILTIAEKL  198 (228)
Q Consensus       125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~---~~~~~~~~~~---l~~~gi~~~sl~t~~~il~~l~~~  198 (228)
                      .|.++.-+|   |-|.   +|...+|..|++|.++++++.   -+..+...|.   .+..|+++.--++=-|.      .
T Consensus       321 ~~~~ITFlD---TPGH---eAFt~MRaRGA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDk------p  388 (770)
T CHL00189        321 QNQKIVFLD---TPGH---EAFSSMRSRGANVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDK------E  388 (770)
T ss_pred             CCCEEEEEC---CCCH---HHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC------C
T ss_conf             897589955---9946---889999862786666799999657885672799999998769988999877458------9


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             8999899999999997299778
Q gi|254781011|r  199 KIFNHDVLEEVRCFLDNPMQWS  220 (228)
Q Consensus       199 ~~I~~~~~~~I~~~l~dP~~W~  220 (228)
                      +.=.+..+..|.+|---|++|+
T Consensus       389 ~an~~rVk~eL~e~gli~EewG  410 (770)
T CHL00189        389 NANIDRVKQELSKYNLISEKWG  410 (770)
T ss_pred             CCCHHHHHHHHHHCCCCHHHCC
T ss_conf             9885789999998695522237


No 217
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=21.52  E-value=63  Score=13.89  Aligned_cols=41  Identities=10%  Similarity=0.215  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCHHH-HHHHHHHHCCCCEEEEE
Q ss_conf             99999986642175666789982231257-88999851587178763
Q gi|254781011|r   62 MDLTAKTVLRNIGFESIDIIAGGETAGIP-FATLLAERLNLPMIYVR  107 (228)
Q Consensus        62 ~~~~~~~i~~~~~~~~~d~I~G~a~~Gip-~a~~iA~~l~~p~~~vR  107 (228)
                      ...+|+++..     ++-+|+||...... +-..++..+++|+++++
T Consensus        52 ~k~~C~ll~~-----GV~AIfGP~s~~sa~~v~Sicdal~IPhi~~~   93 (400)
T cd06391          52 VQEACELMNQ-----GILALVSSIGCTSAGSLQSLADAMHIPHLFIQ   93 (400)
T ss_pred             HHHHHHHHHC-----CCEEEECCCCHHHHHHHHHHHCCCCCCCEEEC
T ss_conf             9999998743-----94699999975589999987446889807632


No 218
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=21.47  E-value=63  Score=13.88  Aligned_cols=90  Identities=10%  Similarity=0.010  Sum_probs=35.3

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             66789982231257889998515871787631564201100133103733414408788732236999999998659878
Q gi|254781011|r   77 SIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII  156 (228)
Q Consensus        77 ~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V  156 (228)
                      ++|.+.=.+...-..........++|++++-..  .           ..+-..+.+|+.-    +...+++.|.+.|.+-
T Consensus        56 ~vdGiI~~~~~~~~~~~~~~~~~~iPvV~i~~~--~-----------~~~~~~V~~Dn~~----~~~~a~~~L~~~G~~~  118 (264)
T cd01574          56 RVDGVIVNAPLDDADAALAAAPADVPVVFVDGS--P-----------SPRVSTVSVDQEG----GARLATEHLLELGHRT  118 (264)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC--C-----------CCCCCEEEECHHH----HHHHHHHHHHHCCCCC
T ss_conf             999999916889969999998589968998667--9-----------9999889978899----9999999999849982


Q ss_pred             EEEEEE-----EECCCCHHHHHHHHHCCCEEE
Q ss_conf             568888-----741763248999997798099
Q gi|254781011|r  157 QDGIGL-----FFYDIFPEVPARFRENNIKLH  183 (228)
Q Consensus       157 ~~~~vi-----i~~~~~~~~~~~l~~~gi~~~  183 (228)
                      .+.+.-     ...+|.++-.+.+.++|++..
T Consensus       119 i~~i~~~~~~~~~~~R~~G~~~al~~~~i~~~  150 (264)
T cd01574         119 IAHVAGPEEWLSARARLAGWRAALEAAGIAPP  150 (264)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             73258997775799999999999998698974


No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=21.44  E-value=63  Score=13.88  Aligned_cols=63  Identities=16%  Similarity=0.196  Sum_probs=33.1

Q ss_pred             EEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE-----------------------EEEE--ECCCCHHHHHHHHHCCCEEE
Q ss_conf             4408788732236999999998659878568-----------------------8887--41763248999997798099
Q gi|254781011|r  129 VLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG-----------------------IGLF--FYDIFPEVPARFRENNIKLH  183 (228)
Q Consensus       129 vliVDDviTtG~S~~~~i~~l~~~g~~V~~~-----------------------~vii--~~~~~~~~~~~l~~~gi~~~  183 (228)
                      |+|=-|+   -||+....+.|++.+..|...                       .+|+  +......+++..++.||++.
T Consensus       355 vIIKADv---~GSlEAl~~~L~~~~I~I~~a~VG~ItesDV~lA~as~~~~~~~avIlgFNVk~~~~a~~~Ae~~gV~I~  431 (592)
T PRK04004        355 VIVKADT---LGSLEALVNELRKQGIPIRKADVGDVSKRDVIEASTVREKDPLYGVILAFNVKVLPDAEEEAESSDVKIF  431 (592)
T ss_pred             EEEEECC---CCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEE
T ss_conf             7999547---6749999999974697579840688664246672431255766518999548899889999997497699


Q ss_pred             EECCHHHHHHH
Q ss_conf             96329999999
Q gi|254781011|r  184 YLATWNDILTI  194 (228)
Q Consensus       184 sl~t~~~il~~  194 (228)
                      +---+-+|++-
T Consensus       432 ~~~IIY~LiDd  442 (592)
T PRK04004        432 EGDVIYQLVED  442 (592)
T ss_pred             EECHHHHHHHH
T ss_conf             80748768999


No 220
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=21.42  E-value=63  Score=13.88  Aligned_cols=47  Identities=13%  Similarity=0.258  Sum_probs=39.2

Q ss_pred             HHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             97798099963299999999988899989999999999729977886098
Q gi|254781011|r  176 RENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSKKNGG  225 (228)
Q Consensus       176 ~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~~~g~  225 (228)
                      .+.|+++.-++|=.|-++.|++..-+.++..+.|.+|+.   ..-=+||-
T Consensus       212 ~NLGiPIvVV~tKsD~me~LEKe~dy~dEhFDfIqq~LR---~fCLqyGA  258 (490)
T pfam05783       212 HNLGIPVVVVCTKCDAMSVLEKEHDYRDEHFDFIQSHIR---RFCLQYGA  258 (490)
T ss_pred             CCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHCCC
T ss_conf             047987799994641888876512620677899999999---99986196


No 221
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=21.42  E-value=47  Score=14.71  Aligned_cols=43  Identities=9%  Similarity=-0.058  Sum_probs=25.0

Q ss_pred             HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             31037334144087887322369999999986598785688887
Q gi|254781011|r  120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF  163 (228)
Q Consensus       120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii  163 (228)
                      -+....|.+| |||||+-.+.-..+..+.|.....-.+++-|=+
T Consensus        79 aa~a~aG~nv-IvD~v~~~~~~l~d~~~~L~g~~v~~VGV~C~l  121 (175)
T cd00227          79 AAMARAGANV-IADDVFLGRAALQDCWRSFVGLDVLWVGVRCPG  121 (175)
T ss_pred             HHHHHCCCCE-EEEEEECCCHHHHHHHHHHCCCCEEEEEEECCH
T ss_conf             9999779988-986312380889999998579927999987899


No 222
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=21.35  E-value=64  Score=13.87  Aligned_cols=56  Identities=9%  Similarity=0.131  Sum_probs=31.2

Q ss_pred             CCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf             3414408788732236999999998659878568888741763248999997798099963299999999
Q gi|254781011|r  126 GARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIA  195 (228)
Q Consensus       126 g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l  195 (228)
                      -++|++|+|-.+       -+.+-+++|..++++    .++ +. ..+.++..+=. +-+-++.||++.|
T Consensus       166 p~e~l~VGDs~~-------Di~aA~~aG~~~i~v----~~G-~~-~~~~l~~~~ad-~vi~~~~eL~~~L  221 (228)
T PRK13222        166 PEQMLFVGDSRN-------DIQAAKAAGCPSVGV----TYG-YN-YGEDIALSEPD-VVIDHFAELLPAL  221 (228)
T ss_pred             CCCEEEEECCHH-------HHHHHHHCCCEEEEE----CCC-CC-CHHHHHHCCCC-EEECCHHHHHHHH
T ss_conf             343489806888-------999999969949998----789-99-97789768999-9989999999985


No 223
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=21.30  E-value=64  Score=13.86  Aligned_cols=42  Identities=10%  Similarity=0.218  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCC--HHHHHHHHHHHCCCCEEEEECC
Q ss_conf             9999986642175666789982231--2578899985158717876315
Q gi|254781011|r   63 DLTAKTVLRNIGFESIDIIAGGETA--GIPFATLLAERLNLPMIYVRKK  109 (228)
Q Consensus        63 ~~~~~~i~~~~~~~~~d~I~G~a~~--Gip~a~~iA~~l~~p~~~vRK~  109 (228)
                      +.+|+++.+     ++-+|+||...  .-.+.+.++..+++|.+..|.+
T Consensus        56 kkvC~ll~~-----GV~AIFGPss~~~s~~~v~siC~al~IPhi~~~~~   99 (333)
T cd06394          56 DTMCQILPK-----GVVSVLGPSSSPASSSIVSHICGEKEIPHFKVGPE   99 (333)
T ss_pred             HHHHHHHHH-----CCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCHH
T ss_conf             999987863-----85799899996657999999844679980861521


No 224
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754   DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel.   RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise:  RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors.  RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs.  Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits.   This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=21.13  E-value=64  Score=13.84  Aligned_cols=85  Identities=22%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             CHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE------E
Q ss_conf             9789999999999865976820789867311872640142621357989999999999998664217566678------9
Q gi|254781011|r    8 QQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDI------I   81 (228)
Q Consensus         8 ~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~------I   81 (228)
                      +++=|=||-..+|+|.+--+    .| +..+|        +|.|=|    ++-..+.=--.+++|..+..+|+      |
T Consensus       342 NEKRMLQEAVDALfDNgRR~----kP-V~G~~--------nRpLKS----LSdmLKGKQGRFRQNLLGKRVDYSGRSVIV  404 (1552)
T TIGR02386       342 NEKRMLQEAVDALFDNGRRG----KP-VVGKN--------NRPLKS----LSDMLKGKQGRFRQNLLGKRVDYSGRSVIV  404 (1552)
T ss_pred             CCCHHHHHHHHHHHCCCCCC----CC-CCCCC--------CCCCCC----HHHHHCCCCCCHHHHHCCCEEEECCCEEEE
T ss_conf             55335678888874478888----63-10788--------977543----244412667730032068605415527899


Q ss_pred             EEECCC----HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             982231----257889998515871787631564
Q gi|254781011|r   82 AGGETA----GIPFATLLAERLNLPMIYVRKKSK  111 (228)
Q Consensus        82 ~G~a~~----Gip~a~~iA~~l~~p~~~vRK~~K  111 (228)
                      +||+++    |+|==  .|..|=+||++-|=..|
T Consensus       405 VGPeLKm~QcGLPk~--MALeLFKPFIi~~L~~K  436 (1552)
T TIGR02386       405 VGPELKMYQCGLPKK--MALELFKPFIIKRLVDK  436 (1552)
T ss_pred             ECCCCCCCCCCCCHH--HHHHHCCCEEEHHHHHH
T ss_conf             889774113688279--88751673023222221


No 225
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.02  E-value=37  Score=15.42  Aligned_cols=43  Identities=26%  Similarity=0.468  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHH
Q ss_conf             5788999851587178763156420110013310373341440878873223
Q gi|254781011|r   89 IPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGN  140 (228)
Q Consensus        89 ip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~  140 (228)
                      +|+...++--+   |.++|++.|..=+.+.....+.+|++|      +|+||
T Consensus        23 l~~ili~~vfY---fl~iRPQ~Kr~ke~~~m~~~L~~Gd~V------vT~gG   65 (107)
T PRK05585         23 LPLVVFFAIFY---FLIIRPQQKRQKEHKKMLSSLAKGDEV------VTNGG   65 (107)
T ss_pred             HHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHCCCCCEE------EECCC
T ss_conf             99999999999---874264889999999999845899999------98998


No 226
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase; InterPro: IPR004446 In a number of species, including Escherichia coli, the histidine biosynthetic enzymes imidazole glycerol phosphate dehydratase and histidinol phosphatase are found together in the bifunctional protein HisB. This family represents a protein closely related to the histidinol phosphatase domain of HisB. The protein is found both in Helicobacter pylori, for which the histidine biosynthetic pathway appears to be absent, and in species that also have a bifunctional HisB protein..
Probab=21.01  E-value=65  Score=13.82  Aligned_cols=16  Identities=19%  Similarity=0.343  Sum_probs=5.9

Q ss_pred             CCCCCHHHHHHHHHHH
Q ss_conf             8899989999999999
Q gi|254781011|r  198 LKIFNHDVLEEVRCFL  213 (228)
Q Consensus       198 ~~~I~~~~~~~I~~~l  213 (228)
                      +|++++++.+.+-+|+
T Consensus        56 RG~ft~~~F~~LT~~~   71 (178)
T TIGR00213        56 RGYFTEKQFEQLTEWL   71 (178)
T ss_pred             CCCCCHHHHHHHHHHH
T ss_conf             3542778899999999


No 227
>PRK12463 chorismate synthase; Reviewed
Probab=20.91  E-value=65  Score=13.81  Aligned_cols=12  Identities=25%  Similarity=0.617  Sum_probs=5.8

Q ss_pred             HHHCCCCCCCEE
Q ss_conf             331037334144
Q gi|254781011|r  119 IEGHLFKGARVL  130 (228)
Q Consensus       119 iEG~~~~g~~vl  130 (228)
                      |+|-+.+|+.++
T Consensus       296 I~GGISnG~pIv  307 (390)
T PRK12463        296 LEGGMTTGMPIV  307 (390)
T ss_pred             EECCCCCCCCEE
T ss_conf             314555898679


No 228
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=20.66  E-value=66  Score=13.77  Aligned_cols=53  Identities=13%  Similarity=0.132  Sum_probs=35.1

Q ss_pred             CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHH-CCCEEEEECC
Q ss_conf             33414408788732236999999998659878568888741763248999997-7980999632
Q gi|254781011|r  125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRE-NNIKLHYLAT  187 (228)
Q Consensus       125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~-~gi~~~sl~t  187 (228)
                      +|++++    |+-.||+...++-.+...|++    +.|++|.  ....+.|.+ .+.+.+++-.
T Consensus       331 ~~~~~~----vlGaGGaarAi~~~l~~~g~~----i~I~nRt--~~ka~~La~~~~~~~~~~~~  384 (477)
T PRK09310        331 NNQHVA----IVGAGGAAKAIATTLARQGAE----LLIFNRT--KAHAEALASRCQGKAFPLGS  384 (477)
T ss_pred             CCCEEE----EECCCHHHHHHHHHHHHCCCE----EEEEECC--HHHHHHHHHHCCCCEEEHHH
T ss_conf             446224----424750799999999867997----9999799--89999999874886753566


No 229
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=20.58  E-value=66  Score=13.76  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=26.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHC--CCCCCCEEEEECCCHH-----HHHHHHHHHCCCCEEEEE
Q ss_conf             35798999999999999866421--7566678998223125-----788999851587178763
Q gi|254781011|r   51 LISFVRARSMIMDLTAKTVLRNI--GFESIDIIAGGETAGI-----PFATLLAERLNLPMIYVR  107 (228)
Q Consensus        51 ~~s~P~~~~~i~~~~~~~i~~~~--~~~~~d~I~G~a~~Gi-----p~a~~iA~~l~~p~~~vR  107 (228)
                      +..+|+..+.-.++..+.-....  ....+|.|+=..+||=     -+.+.+.....+|+...|
T Consensus         5 ~~~~~~q~~ea~~~~~~~~~~~~~~~~~~~~~Ivi~GmGGS~i~Gdv~~~l~~~~~~iPv~v~~   68 (328)
T PRK08674          5 YLNWPKQFEEAWEFAYRYVLEGIEVEIEPYDNIVISGMGGSGIGGDLLRSLLLDEWKKPVFVVR   68 (328)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             8857999999997787526443110147657299995756489999999998447998679855


No 230
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706   Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.    Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , .    This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=20.56  E-value=66  Score=13.76  Aligned_cols=159  Identities=18%  Similarity=0.159  Sum_probs=79.2

Q ss_pred             HHHHHCCCEEE-------ECC-CCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCH
Q ss_conf             99986597682-------078-986731187264014262135798999999999999866421756667899822-312
Q gi|254781011|r   18 KMLFEIKAVNF-------SPE-NPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGE-TAG   88 (228)
Q Consensus        18 ~~L~~~~ai~~-------~~~-g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a-~~G   88 (228)
                      +-|+|+|+ .|       +|. ++|...-=+.-=|-+|+.+++..   ++.--++ +..+..+.+  ++ .-||.= --+
T Consensus         5 k~LleaGv-HFGHqtRRWNPkMk~fIf~eRKngihIIDL~kT~~~---~~~Ay~~-v~~~~~~gg--~i-LFVGTKNkQA   76 (227)
T TIGR01011         5 KDLLEAGV-HFGHQTRRWNPKMKPFIFGERKNGIHIIDLQKTLQL---LEEAYNF-VREVVANGG--KI-LFVGTKNKQA   76 (227)
T ss_pred             HHHHHCCC-CCCCEECCCCCCCCCCCCCCCCCCCEEECHHHHHHH---HHHHHHH-HHHHHHCCC--EE-EEEECHHHHH
T ss_conf             76863885-437542236888988553201278512257899999---9999999-999998199--58-8851658899


Q ss_pred             HHHHHHHHHHCCCCEEEEECCC----------CCCHHHHHHHHC--------CCCCCCEEEHHHHHHHHHHHHHHHHHHH
Q ss_conf             5788999851587178763156----------420110013310--------3733414408788732236999999998
Q gi|254781011|r   89 IPFATLLAERLNLPMIYVRKKS----------KKHGQKSQIEGH--------LFKGARVLVIEDLVTLGNSMFEFVKVIR  150 (228)
Q Consensus        89 ip~a~~iA~~l~~p~~~vRK~~----------K~hG~~~~iEG~--------~~~g~~vliVDDviTtG~S~~~~i~~l~  150 (228)
                      =-+-...|.+-|.||+=-|.=.          |.=-+-+.+|-.        +.+.+...+ -   --=.=+.....-+|
T Consensus        77 ~~~i~~~A~r~g~~YVn~RWLGGMLTNf~TirkSi~kL~~lE~~~~~g~~~~LtKKE~~~L-~---Re~~KL~k~LgGIk  152 (227)
T TIGR01011        77 KEIIKEEAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDVLTKKEILML-S---REKEKLEKNLGGIK  152 (227)
T ss_pred             HHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-H---HHHHHHHHHHHHHH
T ss_conf             9999999987489621133346400247999999999999998776133124770007767-8---99999865530025


Q ss_pred             HCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHH
Q ss_conf             659878568888741763248999997798099963299
Q gi|254781011|r  151 DSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWN  189 (228)
Q Consensus       151 ~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~  189 (228)
                      +.+ ..=++++|+|-.++.-|-..-.+.|||+.++++-+
T Consensus       153 ~M~-~lPd~l~viD~~~E~IAv~EA~kLgIPvvA~vDTN  190 (227)
T TIGR01011       153 DMK-KLPDLLFVIDPRKEKIAVAEARKLGIPVVAIVDTN  190 (227)
T ss_pred             HHH-CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf             453-16970899748210689999733799789870478


No 231
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=20.47  E-value=33  Score=15.69  Aligned_cols=12  Identities=17%  Similarity=0.360  Sum_probs=5.1

Q ss_pred             CCCCEEEHHHHH
Q ss_conf             334144087887
Q gi|254781011|r  125 KGARVLVIEDLV  136 (228)
Q Consensus       125 ~g~~vliVDDvi  136 (228)
                      ++++-+-.||.+
T Consensus       142 p~d~y~~~E~~~  153 (334)
T PRK03971        142 PNDRYIEFEEYM  153 (334)
T ss_pred             CHHHHHHHHHHH
T ss_conf             707789999999


No 232
>TIGR01364 serC_1 phosphoserine aminotransferase; InterPro: IPR003248  Phosphoserine aminotransferases (2.6.1.52 from EC) catalyse the conversion of O-phospho-L-serine and oxoglutarate to 3-phosphonooxypyruvate and L-glutamate in the major phosphorylated serine biosynthesis pathway. In bacteria it is also equired for the biosynthesis of pyridoxine. The enzyme requires pyridoxal phosphate as a cofactor, and is part of the aminotransferase class-V family.; GO: 0006564 L-serine biosynthetic process.
Probab=20.37  E-value=25  Score=16.49  Aligned_cols=37  Identities=3%  Similarity=0.053  Sum_probs=18.5

Q ss_pred             EEEEEEEEC-CCCHHHHH-HHHHCCCEEE-EECCHHHHHH
Q ss_conf             568888741-76324899-9997798099-9632999999
Q gi|254781011|r  157 QDGIGLFFY-DIFPEVPA-RFRENNIKLH-YLATWNDILT  193 (228)
Q Consensus       157 ~~~~vii~~-~~~~~~~~-~l~~~gi~~~-sl~t~~~il~  193 (228)
                      .|+.|||.| |.-..+.. .|.+.|||.. ++++|....+
T Consensus       219 aG~TvVIvR~DLLgr~~~~~LH~L~vP~~P~~~~Y~~~~~  258 (391)
T TIGR01364       219 AGLTVVIVRKDLLGRASDAELHKLGVPITPSMLNYKIHAE  258 (391)
T ss_pred             CEEEEEEECCHHHCCCCCCCHHHCCCCCCCCCCCHHHHHH
T ss_conf             2268999811441567623020166659784132189886


No 233
>PRK07451 translation initiation factor Sui1; Validated
Probab=20.35  E-value=67  Score=13.73  Aligned_cols=69  Identities=19%  Similarity=0.201  Sum_probs=47.7

Q ss_pred             EEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCCCHHHHHHHHHCCC
Q ss_conf             876315642011001331037334144087887322369999999986---59878568888741763248999997798
Q gi|254781011|r  104 IYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRD---SGGIIQDGIGLFFYDIFPEVPARFRENNI  180 (228)
Q Consensus       104 ~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~---~g~~V~~~~vii~~~~~~~~~~~l~~~gi  180 (228)
                      +-+|.+.|+           ..|+.|.+|+-+.-+...+.+..+.|+.   .|+.|.+-...+.=|..+...+.|++.|+
T Consensus        37 lri~~e~KG-----------R~GK~VTvI~G~~~~~~~lk~LaK~LK~~cG~GGtvKdg~IeiQGD~Rdkv~~~L~~~Gy  105 (112)
T PRK07451         37 LRVQATRSG-----------RKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKDNTIEIQGDHRQKILEILIKLGY  105 (112)
T ss_pred             EEEEEEECC-----------CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEECCEEEECCCHHHHHHHHHHHCCC
T ss_conf             899986079-----------999858998699699999999999999973789506089899717479999999998799


Q ss_pred             EEE
Q ss_conf             099
Q gi|254781011|r  181 KLH  183 (228)
Q Consensus       181 ~~~  183 (228)
                      ++-
T Consensus       106 ~vK  108 (112)
T PRK07451        106 KAK  108 (112)
T ss_pred             EEE
T ss_conf             565


No 234
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829    Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=20.19  E-value=33  Score=15.76  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=24.9

Q ss_pred             HHHHHHCCCCCCCEEEEECCCH---HHHHHHHHHHCCCCEEEEEC
Q ss_conf             9866421756667899822312---57889998515871787631
Q gi|254781011|r   67 KTVLRNIGFESIDIIAGGETAG---IPFATLLAERLNLPMIYVRK  108 (228)
Q Consensus        67 ~~i~~~~~~~~~d~I~G~a~~G---ip~a~~iA~~l~~p~~~vRK  108 (228)
                      +.+.+++.-..+|+++  |.||   +-.|.-++.+=++|.+=|-|
T Consensus        96 d~~~~n~~~~GlDAlI--aIGGdGTL~~A~~l~~~GGl~vVGVPK  138 (339)
T TIGR02483        96 DKIVANLKELGLDALI--AIGGDGTLGIARRLADKGGLPVVGVPK  138 (339)
T ss_pred             HHHHHHHHHCCCEEEE--EECCCCHHHHHHHHHHCCCCCEEEECC
T ss_conf             8999989964981899--866872689999999658985474157


No 235
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=20.13  E-value=67  Score=13.70  Aligned_cols=41  Identities=29%  Similarity=0.357  Sum_probs=28.7

Q ss_pred             HHHHHCCCCCCCEEEEECCC-HHHHHHHHHHHCCCCEEEEEC
Q ss_conf             86642175666789982231-257889998515871787631
Q gi|254781011|r   68 TVLRNIGFESIDIIAGGETA-GIPFATLLAERLNLPMIYVRK  108 (228)
Q Consensus        68 ~i~~~~~~~~~d~I~G~a~~-Gip~a~~iA~~l~~p~~~vRK  108 (228)
                      .+.......++|+|.|+--| -+-.|=.+|.++++||+-+--
T Consensus        75 ~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT  116 (360)
T COG0371          75 RLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPFISVPT  116 (360)
T ss_pred             HHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCC
T ss_conf             999870447999899956818999999999981999798057


No 236
>KOG0743 consensus
Probab=20.01  E-value=68  Score=13.69  Aligned_cols=100  Identities=15%  Similarity=0.149  Sum_probs=59.2

Q ss_pred             ECCCCCCEEEEC----CCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-------CEEEEECCCH-HHHHHHHHHHCCCCEE
Q ss_conf             118726401426----213579899999999999986642175666-------7899822312-5788999851587178
Q gi|254781011|r   37 TSGIVSPLYIDC----RKLISFVRARSMIMDLTAKTVLRNIGFESI-------DIIAGGETAG-IPFATLLAERLNLPMI  104 (228)
Q Consensus        37 ~SG~~Sp~Y~d~----r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~-------d~I~G~a~~G-ip~a~~iA~~l~~p~~  104 (228)
                      .++.++++=++-    ..+..+|+.-+.|.+-+.+.+...--+...       =.+.|||-.| -.+-+++|..|+....
T Consensus       185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIy  264 (457)
T KOG0743         185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIY  264 (457)
T ss_pred             CCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             57761256899998744201486678999999999972235788648450004120479999888999999720587367


Q ss_pred             EE-ECCCCCCHH-HHHHHHCCCCCCCEEEHHHHHHH
Q ss_conf             76-315642011-00133103733414408788732
Q gi|254781011|r  105 YV-RKKSKKHGQ-KSQIEGHLFKGARVLVIEDLVTL  138 (228)
Q Consensus       105 ~v-RK~~K~hG~-~~~iEG~~~~g~~vliVDDviTt  138 (228)
                      -. =.+.++... ++++  .-.+++.+|+|||+=.+
T Consensus       265 dLeLt~v~~n~dLr~LL--~~t~~kSIivIEDIDcs  298 (457)
T KOG0743         265 DLELTEVKLDSDLRHLL--LATPNKSILLIEDIDCS  298 (457)
T ss_pred             EEEECCCCCCHHHHHHH--HHCCCCCEEEEEECCCC
T ss_conf             74400236838999999--72899718999612432


Done!