Query gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 228 No_of_seqs 150 out of 1959 Neff 6.2 Searched_HMMs 39220 Date Mon May 30 03:04:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781011.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK13809 orotate phosphoribosy 100.0 0 0 378.7 21.2 199 7-214 4-204 (206) 2 PRK05500 bifunctional orotidin 100.0 0 0 369.2 19.5 190 13-211 287-476 (478) 3 PRK00455 pyrE orotate phosphor 100.0 0 0 356.8 18.5 198 10-216 2-199 (200) 4 PRK13810 orotate phosphoribosy 100.0 0 0 349.0 15.6 178 7-193 10-187 (187) 5 COG0461 PyrE Orotate phosphori 100.0 0 0 341.6 19.4 197 12-216 2-200 (201) 6 PRK13812 orotate phosphoribosy 100.0 0 0 337.8 15.2 170 13-193 3-172 (174) 7 PRK13811 orotate phosphoribosy 100.0 0 0 337.3 14.5 169 12-193 1-169 (170) 8 TIGR00336 pyrE orotate phospho 100.0 0 0 328.2 11.5 170 18-191 1-187 (187) 9 TIGR01367 pyrE_Therm orotate p 100.0 4.6E-35 1.2E-39 249.5 6.7 165 16-189 2-181 (205) 10 PRK02277 orotate phosphoribosy 99.9 9.1E-25 2.3E-29 182.3 12.0 169 5-188 23-197 (201) 11 TIGR01090 apt adenine phosphor 99.9 1.6E-23 4E-28 174.3 11.4 154 25-188 4-175 (175) 12 PRK02304 adenine phosphoribosy 99.9 1.5E-23 3.7E-28 174.5 10.7 144 37-189 17-174 (174) 13 PRK12560 adenine phosphoribosy 99.9 2.1E-22 5.4E-27 166.9 10.3 147 36-189 10-174 (184) 14 PRK08558 adenine phosphoribosy 99.9 6.5E-21 1.7E-25 157.2 13.0 139 45-189 83-238 (238) 15 PRK09219 xanthine phosphoribos 99.9 1.4E-20 3.6E-25 155.1 14.4 133 54-191 31-181 (189) 16 COG0503 Apt Adenine/guanine ph 99.8 4.6E-20 1.2E-24 151.7 10.1 144 37-188 20-177 (179) 17 COG0856 Orotate phosphoribosyl 99.8 6.1E-20 1.6E-24 150.9 9.1 167 5-188 23-197 (203) 18 PRK07322 adenine phosphoribosy 99.8 2E-19 5E-24 147.6 10.5 117 45-166 25-160 (178) 19 TIGR01743 purR_Bsub pur operon 99.8 1.5E-18 3.7E-23 141.9 7.9 161 8-189 77-255 (269) 20 KOG1712 consensus 99.8 5.3E-18 1.4E-22 138.2 8.9 156 24-189 13-182 (183) 21 PRK09213 purine operon repress 99.7 2.7E-17 6.8E-22 133.7 12.1 135 48-192 105-256 (274) 22 TIGR01744 XPRTase xanthine pho 99.7 7.8E-17 2E-21 130.7 10.9 137 48-191 27-181 (191) 23 pfam00156 Pribosyltran Phospho 99.7 1.9E-16 4.8E-21 128.2 10.0 112 50-163 2-123 (123) 24 KOG1377 consensus 99.7 4E-17 1E-21 132.5 4.5 201 14-223 37-258 (261) 25 PRK06031 phosphoribosyltransfe 99.4 1.3E-12 3.4E-17 103.0 8.9 117 61-179 68-205 (233) 26 PRK00553 ribose-phosphate pyro 99.2 9.5E-10 2.4E-14 84.4 15.2 151 12-178 122-277 (340) 27 PRK01259 ribose-phosphate pyro 99.2 9.7E-10 2.5E-14 84.4 12.6 115 65-184 148-265 (309) 28 PRK02812 ribose-phosphate pyro 99.1 2.1E-09 5.4E-14 82.2 12.8 151 13-180 127-283 (331) 29 PRK06827 phosphoribosylpyropho 99.1 1.8E-09 4.5E-14 82.7 11.6 154 13-177 149-314 (381) 30 PRK04117 consensus 99.1 3.3E-09 8.5E-14 80.9 12.4 114 65-183 151-267 (309) 31 PRK05259 consensus 99.1 1.8E-09 4.5E-14 82.7 10.4 115 66-184 149-266 (310) 32 PRK02458 ribose-phosphate pyro 99.1 3.8E-09 9.7E-14 80.5 12.0 101 80-183 172-274 (323) 33 PRK01999 consensus 99.1 1.9E-09 4.9E-14 82.5 10.5 102 79-183 164-268 (311) 34 PRK02039 consensus 99.1 3.3E-09 8.4E-14 80.9 11.7 105 79-186 166-273 (316) 35 PRK01506 consensus 99.1 2.8E-09 7.1E-14 81.4 11.2 105 79-186 169-276 (317) 36 COG0462 PrsA Phosphoribosylpyr 99.1 3.7E-09 9.4E-14 80.6 11.8 150 12-180 109-267 (314) 37 PRK04554 consensus 99.1 3.1E-09 8E-14 81.1 11.2 154 13-183 113-271 (327) 38 PRK02269 ribose-phosphate pyro 99.1 3.5E-09 8.8E-14 80.8 11.2 161 13-186 111-276 (321) 39 PRK04923 ribose-phosphate pyro 99.0 6E-09 1.5E-13 79.2 10.4 102 79-183 168-273 (319) 40 PRK05038 consensus 99.0 9.3E-09 2.4E-13 78.0 11.1 104 79-185 164-271 (315) 41 PRK03092 ribose-phosphate pyro 99.0 8.4E-09 2.1E-13 78.3 10.7 116 64-183 136-257 (304) 42 PRK00934 ribose-phosphate pyro 99.0 8.3E-09 2.1E-13 78.3 10.6 113 65-183 145-260 (286) 43 PRK07199 phosphoribosylpyropho 99.0 9.4E-09 2.4E-13 78.0 10.8 102 79-183 162-267 (301) 44 PTZ00145 phosphoribosylpyropho 99.0 1.4E-08 3.5E-13 76.9 11.4 156 12-183 228-395 (443) 45 PRK01132 consensus 98.9 6.9E-09 1.8E-13 78.8 9.3 109 77-191 153-264 (286) 46 PRK03675 consensus 98.9 2E-08 5E-13 75.9 10.7 110 65-181 142-254 (279) 47 PRK02270 consensus 98.9 7.9E-08 2E-12 71.9 12.9 150 13-180 111-267 (327) 48 PRK11595 gluconate periplasmic 98.9 1.7E-08 4.4E-13 76.2 9.4 111 53-163 85-224 (227) 49 PRK09246 amidophosphoribosyltr 98.8 4E-07 1E-11 67.4 14.0 165 56-221 272-489 (503) 50 PRK05205 bifunctional pyrimidi 98.8 1.4E-07 3.7E-12 70.2 11.1 116 50-166 5-136 (176) 51 COG1926 Predicted phosphoribos 98.6 1.2E-06 3E-11 64.3 11.2 149 62-217 11-212 (220) 52 COG1040 ComFC Predicted amidop 98.6 2.3E-07 5.8E-12 68.9 7.4 106 56-163 92-221 (225) 53 COG0034 PurF Glutamine phospho 98.6 1.9E-07 4.8E-12 69.5 6.9 137 55-197 266-437 (470) 54 COG2065 PyrR Pyrimidine operon 98.5 7.4E-07 1.9E-11 65.6 9.1 116 50-166 5-137 (179) 55 PTZ00271 hypoxanthine-guanine 98.5 1.9E-06 5E-11 62.9 10.7 132 29-165 7-157 (211) 56 COG2236 Predicted phosphoribos 98.5 3.1E-07 7.9E-12 68.1 6.3 98 49-151 4-112 (192) 57 PRK06388 amidophosphoribosyltr 98.4 1.8E-06 4.6E-11 63.1 7.5 135 56-195 275-443 (474) 58 PRK08525 amidophosphoribosyltr 98.3 1.7E-06 4.4E-11 63.2 6.6 136 55-195 258-427 (445) 59 PRK07349 amidophosphoribosyltr 98.3 1.8E-06 4.6E-11 63.1 6.6 100 56-161 291-407 (495) 60 PRK09177 xanthine-guanine phos 98.3 1.7E-06 4.2E-11 63.3 6.4 96 52-151 10-109 (156) 61 PRK06781 amidophosphoribosyltr 98.3 2.9E-06 7.3E-11 61.8 7.5 135 55-195 266-435 (471) 62 PRK07272 amidophosphoribosyltr 98.3 1.8E-06 4.5E-11 63.1 6.3 135 55-195 268-437 (484) 63 PRK07631 amidophosphoribosyltr 98.3 2.3E-06 5.9E-11 62.3 6.7 134 56-195 267-435 (475) 64 PRK09162 hypoxanthine-guanine 98.3 1.1E-05 2.8E-10 58.0 10.1 111 51-165 16-136 (181) 65 PRK07847 amidophosphoribosyltr 98.3 3.3E-06 8.5E-11 61.3 7.4 135 56-196 261-430 (489) 66 PRK09123 amidophosphoribosyltr 98.3 4.4E-06 1.1E-10 60.5 8.0 100 56-161 270-386 (480) 67 PRK05793 amidophosphoribosyltr 98.3 2.5E-06 6.3E-11 62.2 6.4 101 56-161 275-391 (472) 68 PRK08341 amidophosphoribosyltr 98.3 3.1E-06 7.9E-11 61.5 6.9 102 55-161 254-369 (442) 69 COG0634 Hpt Hypoxanthine-guani 98.2 2.8E-05 7.1E-10 55.3 9.7 114 50-165 10-132 (178) 70 KOG1448 consensus 98.1 1.9E-05 4.7E-10 56.5 8.4 152 11-180 107-267 (316) 71 TIGR01203 HGPRTase hypoxanthin 98.0 3.8E-05 9.7E-10 54.4 8.3 110 52-164 3-139 (183) 72 TIGR01251 ribP_PPkin ribose-ph 97.8 0.00054 1.4E-08 46.9 10.7 154 10-179 104-264 (316) 73 TIGR01134 purF amidophosphorib 97.8 8.3E-05 2.1E-09 52.2 6.3 138 55-196 274-448 (467) 74 KOG0572 consensus 97.7 9.1E-05 2.3E-09 52.0 5.8 87 74-161 288-391 (474) 75 TIGR00201 comF comF family pro 97.6 2E-05 5.1E-10 56.3 1.1 107 57-163 67-206 (207) 76 PTZ00149 hypoxanthine phosphor 97.4 0.00096 2.4E-08 45.3 8.2 112 50-165 43-176 (231) 77 KOG3367 consensus 96.8 0.006 1.5E-07 40.1 7.2 109 52-164 37-163 (216) 78 TIGR01091 upp uracil phosphori 96.5 0.0033 8.3E-08 41.8 3.8 113 80-201 75-198 (213) 79 PRK00129 upp uracil phosphorib 96.2 0.096 2.4E-06 32.3 9.9 113 82-201 74-193 (208) 80 COG0035 Upp Uracil phosphoribo 95.2 0.079 2E-06 32.8 6.3 72 123-201 121-195 (210) 81 TIGR01078 arcA arginine deimin 86.3 0.37 9.5E-06 28.4 1.6 53 134-186 341-398 (421) 82 KOG1503 consensus 82.0 4.6 0.00012 21.3 8.9 103 80-185 170-305 (354) 83 TIGR02782 TrbB_P P-type conjug 81.9 4.3 0.00011 21.5 5.5 95 9-111 7-110 (315) 84 pfam00456 Transketolase_N Tran 79.2 1.5 3.8E-05 24.5 2.3 34 11-46 30-70 (333) 85 PRK07105 pyridoxamine kinase; 78.1 6.2 0.00016 20.5 7.3 35 186-220 222-256 (284) 86 PRK01388 arginine deiminase; P 76.3 4 0.0001 21.7 3.9 51 135-185 334-386 (410) 87 COG2235 ArcA Arginine deiminas 73.5 3.7 9.4E-05 21.9 3.1 54 134-187 331-387 (409) 88 TIGR00502 nagB glucosamine-6-p 71.6 4.9 0.00012 21.1 3.4 37 58-94 9-49 (260) 89 pfam06616 BsuBI_PstI_RE BsuBI/ 70.8 9.4 0.00024 19.3 5.1 41 125-165 224-268 (306) 90 cd01976 Nitrogenase_MoFe_alpha 66.0 12 0.0003 18.7 6.2 69 91-160 121-205 (421) 91 PTZ00089 transketolase; Provis 65.1 9.6 0.00024 19.2 3.7 29 16-45 38-73 (670) 92 PRK12753 transketolase; Review 64.0 13 0.00033 18.4 4.2 35 10-46 30-71 (662) 93 KOG1017 consensus 63.5 12 0.00032 18.5 4.1 60 126-187 189-248 (267) 94 TIGR03029 EpsG chain length de 61.8 14 0.00036 18.2 8.5 19 141-159 252-270 (274) 95 PRK09841 cryptic autophosphory 61.3 14 0.00036 18.1 8.6 14 144-157 683-696 (726) 96 TIGR01082 murC UDP-N-acetylmur 59.0 8.7 0.00022 19.5 2.6 123 92-214 305-466 (491) 97 pfam04989 CmcI Cephalosporin h 56.9 17 0.00043 17.6 4.1 44 48-100 11-58 (202) 98 COG0773 MurC UDP-N-acetylmuram 56.5 6.9 0.00018 20.2 1.8 121 92-215 288-430 (459) 99 PRK12754 transketolase; Review 55.7 7.2 0.00018 20.0 1.8 34 11-46 32-73 (663) 100 cd00316 Oxidoreductase_nitroge 55.4 18 0.00046 17.5 8.1 33 128-160 154-186 (399) 101 PRK08574 cystathionine gamma-s 54.7 18 0.00047 17.4 4.0 32 123-157 89-120 (384) 102 TIGR01007 eps_fam capsular exo 54.7 18 0.00047 17.4 8.9 90 32-163 98-190 (207) 103 KOG0425 consensus 52.4 18 0.00045 17.5 3.3 63 160-222 91-155 (171) 104 TIGR00021 rpiA ribose 5-phosph 52.4 13 0.00034 18.3 2.7 65 14-106 6-70 (236) 105 KOG3111 consensus 52.1 20 0.00051 17.1 5.1 137 10-159 17-196 (224) 106 PRK09311 bifunctional 3,4-dihy 49.4 22 0.00056 16.9 5.7 42 120-164 241-294 (400) 107 PRK00014 ribB 3,4-dihydroxy-2- 49.3 22 0.00057 16.9 6.0 63 135-200 152-219 (230) 108 TIGR01464 hemE uroporphyrinoge 48.3 21 0.00052 17.1 3.1 127 16-151 124-282 (351) 109 PRK04042 rpl4lp 50S ribosomal 47.5 24 0.0006 16.7 4.2 25 130-154 141-165 (254) 110 TIGR03672 rpl4p_arch 50S ribos 46.8 24 0.00062 16.6 4.5 58 130-189 140-224 (251) 111 cd00532 MGS-like MGS-like doma 45.7 25 0.00064 16.5 5.0 27 77-109 25-51 (112) 112 cd00992 PDZ_signaling PDZ doma 45.1 15 0.00039 17.9 2.1 37 121-157 42-78 (82) 113 PRK07671 cystathionine beta-ly 44.2 18 0.00045 17.5 2.3 14 122-135 130-143 (377) 114 pfam11382 DUF3186 Protein of u 43.4 27 0.0007 16.3 4.4 18 146-163 103-120 (307) 115 PRK07504 O-succinylhomoserine 43.3 17 0.00042 17.7 2.0 15 121-135 145-159 (397) 116 PRK13435 response regulator; P 43.0 23 0.0006 16.7 2.7 19 88-106 62-80 (141) 117 pfam02233 PNTB NAD(P) transhyd 43.0 28 0.0007 16.2 3.3 68 124-192 306-378 (464) 118 PRK05994 O-acetylhomoserine am 42.8 26 0.00067 16.4 3.0 12 122-133 144-155 (426) 119 pfam00551 Formyl_trans_N Formy 42.6 28 0.00072 16.2 5.0 10 77-86 79-88 (181) 120 pfam01343 Peptidase_S49 Peptid 41.6 29 0.00074 16.1 3.1 14 184-197 136-149 (154) 121 PRK00115 hemE uroporphyrinogen 41.4 19 0.00049 17.3 2.1 39 31-69 146-189 (347) 122 pfam04189 Gcd10p Gcd10p family 41.2 29 0.00075 16.1 3.8 52 121-179 198-249 (300) 123 cd00717 URO-D Uroporphyrinogen 40.3 22 0.00056 16.9 2.3 15 172-186 244-258 (335) 124 pfam02477 Nairo_nucleo Nucleoc 40.3 24 0.0006 16.7 2.4 65 146-222 295-359 (442) 125 COG0120 RpiA Ribose 5-phosphat 39.8 28 0.00072 16.2 2.7 27 79-107 47-73 (227) 126 PRK13978 ribose-5-phosphate is 39.5 31 0.0008 15.9 3.2 73 6-106 1-74 (228) 127 PRK07206 hypothetical protein; 38.4 32 0.00083 15.8 3.6 27 77-103 70-96 (415) 128 PRK00830 consensus 38.1 30 0.00075 16.0 2.6 77 138-215 171-266 (273) 129 PRK13745 anaerobic sulfatase-m 37.3 34 0.00086 15.7 2.8 47 140-187 153-202 (412) 130 TIGR03161 ribazole_CobZ alpha- 37.2 34 0.00086 15.7 2.9 15 50-64 42-56 (140) 131 cd01523 RHOD_Lact_B Member of 36.8 34 0.00088 15.6 3.2 33 122-157 57-89 (100) 132 cd07022 S49_Sppa_36K_type Sign 36.8 34 0.00088 15.6 3.6 86 129-219 77-165 (214) 133 KOG3124 consensus 36.5 15 0.00039 17.9 1.0 79 77-156 162-248 (267) 134 PRK11070 ssDNA exonuclease Rec 36.4 35 0.00089 15.6 4.2 129 11-157 18-154 (574) 135 KOG2311 consensus 36.2 22 0.00056 16.9 1.7 84 129-222 437-520 (679) 136 PRK09191 two-component respons 35.7 36 0.00091 15.5 4.0 63 127-192 138-223 (261) 137 PRK06084 O-acetylhomoserine am 35.4 23 0.00058 16.8 1.7 37 118-154 135-174 (424) 138 PRK06518 hypothetical protein; 35.1 19 0.00047 17.4 1.2 13 214-226 174-186 (192) 139 TIGR01372 soxA sarcosine oxida 35.0 37 0.00094 15.4 5.9 54 123-183 328-383 (1026) 140 PRK05802 hypothetical protein; 34.6 37 0.00095 15.4 4.3 146 32-215 99-252 (328) 141 TIGR02173 cyt_kin_arch cytidyl 34.2 35 0.00089 15.6 2.5 122 80-214 4-173 (173) 142 PRK09019 translation initiatio 34.0 38 0.00097 15.3 5.0 71 102-183 31-104 (108) 143 TIGR00313 cobQ cobyric acid sy 33.8 38 0.00098 15.3 3.5 162 23-217 70-245 (502) 144 TIGR01469 cobA_cysG_Cterm urop 33.8 35 0.00089 15.6 2.4 149 5-198 60-223 (242) 145 cd01480 vWA_collagen_alpha_1-V 33.7 38 0.00098 15.3 6.3 61 127-193 110-177 (186) 146 smart00448 REC cheY-homologous 33.5 35 0.0009 15.5 2.4 27 128-157 2-28 (55) 147 TIGR01857 FGAM-synthase phosph 33.2 25 0.00064 16.5 1.6 122 24-166 352-497 (1279) 148 cd07213 Pat17_PNPLA8_PNPLA9_li 33.1 39 0.001 15.2 4.2 21 76-97 33-53 (288) 149 pfam00595 PDZ PDZ domain (Also 32.7 31 0.00078 15.9 2.0 38 121-158 40-77 (80) 150 cd07023 S49_Sppa_N_C Signal pe 32.4 29 0.00073 16.1 1.8 89 126-219 66-158 (208) 151 TIGR00432 arcsn_tRNA_tgt archa 32.3 41 0.001 15.1 2.9 29 122-150 613-644 (658) 152 cd07216 Pat17_PNPLA8_PNPLA9_li 31.7 41 0.0011 15.1 4.1 19 77-96 42-60 (309) 153 pfam00573 Ribosomal_L4 Ribosom 31.6 42 0.0011 15.1 2.6 83 125-210 103-188 (190) 154 PRK08134 O-acetylhomoserine am 31.2 41 0.001 15.1 2.5 17 120-136 143-159 (433) 155 TIGR02159 PA_CoA_Oxy4 phenylac 30.7 43 0.0011 15.0 4.4 36 146-181 50-91 (152) 156 PRK08064 cystathionine beta-ly 30.4 20 0.00051 17.1 0.7 12 123-134 135-146 (390) 157 TIGR02128 G6PI_arch bifunction 30.3 44 0.0011 14.9 4.2 83 70-159 19-125 (338) 158 COG1433 Uncharacterized conser 30.3 44 0.0011 14.9 6.7 53 142-199 54-108 (121) 159 PRK13949 shikimate kinase; Pro 30.3 21 0.00054 17.0 0.8 27 80-106 5-32 (169) 160 COG0108 RibB 3,4-dihydroxy-2-b 30.1 44 0.0011 14.9 6.2 61 135-198 136-201 (203) 161 PRK09028 cystathionine beta-ly 30.0 27 0.0007 16.3 1.4 16 120-135 140-155 (394) 162 pfam04659 Arch_fla_DE Archaeal 29.9 44 0.0011 14.9 4.0 32 186-217 36-67 (99) 163 PRK08249 cystathionine gamma-s 29.8 26 0.00067 16.4 1.3 64 119-188 142-211 (398) 164 KOG0337 consensus 29.4 35 0.0009 15.5 1.9 67 93-163 229-295 (529) 165 PRK05968 hypothetical protein; 29.3 28 0.00072 16.2 1.4 30 125-154 146-178 (389) 166 PRK02747 consensus 29.1 43 0.0011 15.0 2.2 78 137-215 153-249 (257) 167 smart00228 PDZ Domain present 29.0 43 0.0011 15.0 2.2 35 123-157 44-78 (85) 168 PRK09314 bifunctional 3,4-dihy 29.0 46 0.0012 14.8 6.3 54 141-197 142-200 (339) 169 PRK12485 bifunctional 3,4-dihy 28.9 46 0.0012 14.8 5.8 42 120-164 240-294 (369) 170 PRK08248 O-acetylhomoserine am 28.8 30 0.00077 16.0 1.4 16 121-136 144-159 (431) 171 cd03768 SR_ResInv Serine Recom 28.8 46 0.0012 14.8 2.8 79 103-186 2-91 (126) 172 smart00114 CARD Caspase recrui 28.6 38 0.00096 15.4 1.9 41 174-214 8-48 (88) 173 cd01985 ETF The electron trans 28.4 34 0.00087 15.6 1.6 59 39-104 59-119 (181) 174 PRK13937 phosphoheptose isomer 28.4 47 0.0012 14.7 8.2 115 54-181 24-160 (192) 175 COG5016 Pyruvate/oxaloacetate 28.3 47 0.0012 14.7 5.0 16 139-154 301-316 (472) 176 KOG1993 consensus 28.1 39 0.001 15.2 1.9 21 206-226 387-407 (978) 177 PRK07811 cystathionine gamma-s 27.4 32 0.00082 15.8 1.4 18 120-137 137-154 (386) 178 COG3387 SGA1 Glucoamylase and 27.0 39 0.00098 15.3 1.7 20 182-202 535-554 (612) 179 PRK08058 DNA polymerase III su 27.0 50 0.0013 14.6 9.7 74 90-163 67-148 (329) 180 KOG0741 consensus 27.0 50 0.0013 14.6 10.9 149 64-216 525-703 (744) 181 pfam11000 DUF2840 Protein of u 26.8 39 0.001 15.2 1.7 62 98-159 38-114 (149) 182 pfam09756 DDRGK DDRGK domain. 26.7 50 0.0013 14.5 5.1 72 124-209 109-183 (189) 183 smart00829 PKS_ER Enoylreducta 26.4 51 0.0013 14.5 3.8 75 80-155 108-201 (288) 184 TIGR01426 MGT glycosyltransfer 26.0 52 0.0013 14.4 5.1 53 52-104 74-126 (429) 185 PRK13288 pyrophosphatase PpaX; 25.6 53 0.0013 14.4 5.2 58 127-198 156-213 (214) 186 cd03785 GT1_MurG MurG is an N- 25.6 53 0.0013 14.4 3.1 28 76-105 88-117 (350) 187 PRK00939 translation initiatio 25.6 53 0.0013 14.4 3.9 62 124-185 34-98 (99) 188 PRK06476 pyrroline-5-carboxyla 25.5 41 0.001 15.1 1.6 16 79-95 87-102 (255) 189 cd04882 ACT_Bt0572_2 C-termina 25.4 53 0.0014 14.4 5.4 43 140-182 11-64 (65) 190 PRK10693 response regulator of 25.2 54 0.0014 14.4 4.5 30 77-106 51-85 (337) 191 PRK05319 rplD 50S ribosomal pr 25.2 54 0.0014 14.3 5.2 86 125-214 118-206 (206) 192 PRK09444 pntB pyridine nucleot 24.4 34 0.00086 15.7 1.0 66 125-191 302-372 (459) 193 PRK03731 aroL shikimate kinase 24.3 29 0.00074 16.1 0.7 86 80-177 6-113 (172) 194 PRK08508 biotin synthase; Prov 24.3 30 0.00077 16.0 0.8 14 143-156 140-153 (279) 195 COG2025 FixB Electron transfer 24.3 56 0.0014 14.2 3.4 62 42-103 45-107 (313) 196 COG0532 InfB Translation initi 24.2 56 0.0014 14.2 4.5 66 127-195 307-396 (509) 197 KOG3209 consensus 24.1 56 0.0014 14.2 3.4 58 104-163 758-835 (984) 198 cd07039 TPP_PYR_POX Pyrimidine 23.9 57 0.0014 14.2 8.9 93 61-163 2-96 (164) 199 TIGR00070 hisG ATP phosphoribo 23.8 46 0.0012 14.8 1.6 19 134-159 183-201 (317) 200 pfam08679 DsrD Dissimilatory s 23.7 51 0.0013 14.5 1.9 31 36-66 10-43 (65) 201 PRK13633 cobalt transporter AT 23.5 58 0.0015 14.1 3.4 36 121-157 158-200 (281) 202 PRK11880 pyrroline-5-carboxyla 23.4 39 0.00099 15.3 1.2 14 52-65 69-82 (267) 203 TIGR02823 oxido_YhdH putative 23.2 59 0.0015 14.1 5.8 121 76-199 27-194 (330) 204 pfam01053 Cys_Met_Meta_PP Cys/ 23.2 57 0.0015 14.2 2.0 10 179-188 190-199 (381) 205 COG0616 SppA Periplasmic serin 23.1 55 0.0014 14.3 1.9 88 127-219 130-220 (317) 206 pfam10761 DUF2590 Protein of u 22.8 59 0.0015 14.1 2.8 22 30-52 6-27 (103) 207 PRK11778 putative periplasmic 22.8 17 0.00045 17.5 -0.7 86 129-219 137-225 (317) 208 PRK13938 phosphoheptose isomer 22.7 60 0.0015 14.0 5.6 97 55-159 28-146 (196) 209 PRK06531 yajC preprotein trans 22.5 24 0.00061 16.6 -0.0 31 100-130 14-44 (120) 210 PRK07449 2-succinyl-6-hydroxy- 22.4 61 0.0015 14.0 7.2 18 178-195 495-512 (548) 211 TIGR00064 ftsY signal recognit 22.2 57 0.0014 14.2 1.8 66 125-194 203-274 (284) 212 pfam01012 ETF Electron transfe 22.2 61 0.0016 14.0 3.1 39 62-104 76-115 (161) 213 PRK00910 ribB 3,4-dihydroxy-2- 22.0 62 0.0016 14.0 6.6 61 135-198 148-213 (218) 214 cd06381 PBP1_iGluR_delta_like 21.9 62 0.0016 13.9 4.5 43 62-109 52-95 (363) 215 TIGR00739 yajC preprotein tran 21.9 21 0.00053 17.1 -0.5 29 103-131 18-46 (86) 216 CHL00189 infB translation init 21.7 63 0.0016 13.9 5.3 84 125-220 321-410 (770) 217 cd06391 PBP1_iGluR_delta_2 N-t 21.5 63 0.0016 13.9 4.4 41 62-107 52-93 (400) 218 cd01574 PBP1_LacI Ligand-bindi 21.5 63 0.0016 13.9 9.9 90 77-183 56-150 (264) 219 PRK04004 translation initiatio 21.4 63 0.0016 13.9 4.5 63 129-194 355-442 (592) 220 pfam05783 DLIC Dynein light in 21.4 63 0.0016 13.9 4.5 47 176-225 212-258 (490) 221 cd00227 CPT Chloramphenicol (C 21.4 47 0.0012 14.7 1.3 43 120-163 79-121 (175) 222 PRK13222 phosphoglycolate phos 21.3 64 0.0016 13.9 2.5 56 126-195 166-221 (228) 223 cd06394 PBP1_iGluR_Kainate_KA1 21.3 64 0.0016 13.9 4.3 42 63-109 56-99 (333) 224 TIGR02386 rpoC_TIGR DNA-direct 21.1 64 0.0016 13.8 2.2 85 8-111 342-436 (1552) 225 PRK05585 yajC preprotein trans 21.0 37 0.00094 15.4 0.7 43 89-140 23-65 (107) 226 TIGR00213 GmhB_yaeD D,D-heptos 21.0 65 0.0016 13.8 3.9 16 198-213 56-71 (178) 227 PRK12463 chorismate synthase; 20.9 65 0.0017 13.8 3.0 12 119-130 296-307 (390) 228 PRK09310 aroDE bifunctional 3- 20.7 66 0.0017 13.8 6.2 53 125-187 331-384 (477) 229 PRK08674 bifunctional phosphog 20.6 66 0.0017 13.8 3.9 57 51-107 5-68 (328) 230 TIGR01011 rpsB_bact ribosomal 20.6 66 0.0017 13.8 3.4 159 18-189 5-190 (227) 231 PRK03971 putative deoxyhypusin 20.5 33 0.00085 15.7 0.3 12 125-136 142-153 (334) 232 TIGR01364 serC_1 phosphoserine 20.4 25 0.00064 16.5 -0.3 37 157-193 219-258 (391) 233 PRK07451 translation initiatio 20.3 67 0.0017 13.7 4.2 69 104-183 37-108 (112) 234 TIGR02483 PFK_mixed phosphofru 20.2 33 0.00083 15.8 0.2 40 67-108 96-138 (339) 235 COG0371 GldA Glycerol dehydrog 20.1 67 0.0017 13.7 4.9 41 68-108 75-116 (360) 236 KOG0743 consensus 20.0 68 0.0017 13.7 7.4 100 37-138 185-298 (457) No 1 >PRK13809 orotate phosphoribosyltransferase; Provisional Probab=100.00 E-value=0 Score=378.74 Aligned_cols=199 Identities=21% Similarity=0.312 Sum_probs=188.2 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf 89789999999999865976820789867311872640142621357989999999999998664217566678998223 Q gi|254781011|r 7 PQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGET 86 (228) Q Consensus 7 ~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~ 86 (228) .+..+|++++++.|+++||++| |+|+|+||++||||||||++++||+.++.+++++.+.. .. .++|.|+|+|+ T Consensus 4 ~~~~~~~~~~~~~L~e~ga~kf---G~FtL~SG~kSp~Y~D~r~~~s~P~~~~~i~~~~~~~~-~~---~~~d~i~Gv~~ 76 (206) T PRK13809 4 YEDAKLRGQAVAILYQIGAIKF---GKHILASGEETPLYVDMRLVISSPEVLQTVATLIWRLR-PS---FNSSLLCGVPY 76 (206) T ss_pred HHHHHHHHHHHHHHHHCCCEEE---CCEEECCCCCCCEEEECEECCCCHHHHHHHHHHHHHHH-HC---CCCCEEECCCH T ss_conf 2789999999999998699896---98787878878997879523069999999999999986-25---58678984313 Q ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH--HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE Q ss_conf 125788999851587178763156420110013--310373341440878873223699999999865987856888874 Q gi|254781011|r 87 AGIPFATLLAERLNLPMIYVRKKSKKHGQKSQI--EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228) Q Consensus 87 ~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~i--EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228) +|||+|+.+|.++++|++|+||++|+||+++++ ||.+.+|+||++||||+|||+|+++++++||++|++|.+++|++ T Consensus 77 ggip~A~~ia~~~~~P~~~vRke~K~~g~~~~i~iEG~~~~G~kVvvIEDViTTGgSil~ai~~lr~~G~~V~~v~viv- 155 (206) T PRK13809 77 TALTLATSISLKYNIPMVLRRKELQNVDPSDAIKVEGLFTPGQTCLVINDMVSSGKSIIETAVALEENGLVVREALVFL- 155 (206) T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEE- T ss_conf 3899999999860998388744545678676025335778998899997334468009999999998799699999999- Q ss_pred CCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 17632489999977980999632999999999888999899999999997 Q gi|254781011|r 165 YDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLD 214 (228) Q Consensus 165 ~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~ 214 (228) ||+++|.++|+++|+++|||+||++|++++.+.|+|++++.+.++.|++ T Consensus 156 -DReegg~e~l~~~Gi~l~sl~t~~~ll~~l~~~g~ise~e~~~~~k~~e 204 (206) T PRK13809 156 -DRRKEACQPLGPQGIKVSSVFTVPTLIKALIAYGKLSSGDLTLANKISE 204 (206) T ss_pred -ECCCCHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf -2651679999977991899677999999999849969999999999986 No 2 >PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated Probab=100.00 E-value=0 Score=369.17 Aligned_cols=190 Identities=26% Similarity=0.361 Sum_probs=181.5 Q ss_pred HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH Q ss_conf 99999999865976820789867311872640142621357989999999999998664217566678998223125788 Q gi|254781011|r 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFA 92 (228) Q Consensus 13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a 92 (228) .++++..|+++||+|| |+|+|+||+.||||||+|.++|+|..++.+++.+++.+.. .+||.|+|+||+|+|+| T Consensus 287 ~~~li~~L~dig~lkF---GeFtLkSG~~SPyYiDlr~~~S~P~ll~~v~~~ya~~~~~----~~fD~i~GvpY~glP~A 359 (478) T PRK05500 287 HQDLILQLYDIGCILF---GEYVQASGATFSYYIDLRKIISNPQLFHQVLSAYAEILKN----LTFDRIAGIPYGSLPTA 359 (478) T ss_pred HHHHHHHHHHCCCEEE---ECEEECCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHCC----CCCCEEECCCCCHHHHH T ss_conf 6899999974585785---0468767885776886145138899999999999998608----99767966665409999 Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHH Q ss_conf 99985158717876315642011001331037334144087887322369999999986598785688887417632489 Q gi|254781011|r 93 TLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVP 172 (228) Q Consensus 93 ~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~ 172 (228) +.+|..+++||+|+|||+|+||++++|||.+.+|++|+|||||+|||+|++++++.|+++|++|.+++|++ ||.+++. T Consensus 360 T~lSl~~~~Pm~~~RKE~K~hGt~~~IeG~~~~G~~vlIIdDViTsG~Si~e~i~~L~~~G~~V~~~vV~l--DReeg~~ 437 (478) T PRK05500 360 TGLALHLHHPMIFPRKEVKAHGTRRLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFI--DHEQGVK 437 (478) T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEE--ECCCCHH T ss_conf 99999828976996164356688872565338998899996012677879999999998799387799999--3542368 Q ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 999977980999632999999999888999899999999 Q gi|254781011|r 173 ARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRC 211 (228) Q Consensus 173 ~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~ 211 (228) ++|+++||++||++|+++|++.|++.|.|++++++.+.+ T Consensus 438 ~~L~~~Gi~l~sv~tl~ei~~~L~~~g~i~~~q~~~~~~ 476 (478) T PRK05500 438 DKLQSHGYQAYSVLTISEITETLYQAGRINEEQYQALTE 476 (478) T ss_pred HHHHHCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 899867936999730999999999839989999998873 No 3 >PRK00455 pyrE orotate phosphoribosyltransferase; Validated Probab=100.00 E-value=0 Score=356.80 Aligned_cols=198 Identities=35% Similarity=0.553 Sum_probs=187.1 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH Q ss_conf 89999999999865976820789867311872640142621357989999999999998664217566678998223125 Q gi|254781011|r 10 NIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGI 89 (228) Q Consensus 10 ~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gi 89 (228) ...++++++.|+++||++| |||+|+||++||||||+|++++||+.++.+++++++.|.+ .++|.|+|||+||| T Consensus 2 ~~~~~~~~~~l~~~~al~~---G~F~L~SG~~S~~Y~d~~~l~~~p~~~~~i~~~~~~~i~~----~~~d~I~G~a~ggi 74 (200) T PRK00455 2 KMYAREFLEFLLEIGALLF---GHFTLSSGRKSPYYFDCRKLFNYPEALALLGRFLAEAIKD----SGIDFVAGPATGGI 74 (200) T ss_pred CHHHHHHHHHHHHCCCEEE---CCEEECCCCCCHHHHCCHHHHHCHHHHHHHHHHHHHHHHH----CCCCEEEECCCCHH T ss_conf 0789999999998899597---9688677475616718889886999999999999999754----49989973331068 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH Q ss_conf 78899985158717876315642011001331037334144087887322369999999986598785688887417632 Q gi|254781011|r 90 PFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP 169 (228) Q Consensus 90 p~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~ 169 (228) |+|+.+|..+++|++|+||++|+||+++++||.+.+|+||+|||||+|||+|+++++++|+++|++|++++|++||+ ++ T Consensus 75 pia~~ia~~l~~p~~~~Rke~K~hG~~~~ieG~~~~g~~VliVeDViTtG~S~~~ai~~l~~~G~~V~~v~vivDR~-~~ 153 (200) T PRK00455 75 PLAAAVARALDLPMIFVRKEAKDHGEGRQIEGALLKGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRE-LS 153 (200) T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHCCCEEEEEEEEEECC-CH T ss_conf 99999999729987999705775565866642445545348876301047019999999998799799999999567-35 Q ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 48999997798099963299999999988899989999999999729 Q gi|254781011|r 170 EVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNP 216 (228) Q Consensus 170 ~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP 216 (228) ++.+.+++.|+++|||+||+++++.+ +...+++++...++.|++++ T Consensus 154 ~~~~~~~~~gi~l~sl~tl~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 199 (200) T PRK00455 154 AAQEVEADAGVPLISLITLDDLLEYA-EEGPLCEEGLPAVKPYRRNY 199 (200) T ss_pred HHHHHHHHCCCCEEEEEEHHHHHHHH-HHCCCCHHHHHHHHHHHHHC T ss_conf 66778986599789997638989989-86976643048777788627 No 4 >PRK13810 orotate phosphoribosyltransferase; Provisional Probab=100.00 E-value=0 Score=349.01 Aligned_cols=178 Identities=28% Similarity=0.410 Sum_probs=170.2 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf 89789999999999865976820789867311872640142621357989999999999998664217566678998223 Q gi|254781011|r 7 PQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGET 86 (228) Q Consensus 7 ~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~ 86 (228) +|.++.++++++.|.++||++| |+|+|+||++||||||||+++++|+.+.++++.+++.|.. .++|.|+|||+ T Consensus 10 ~~m~~~k~~ll~~l~~~gal~~---G~F~L~SG~~S~~Y~d~r~~~~~p~~~~~i~~~~~~~i~~----~~~d~I~G~a~ 82 (187) T PRK13810 10 NNIENQKQELIAALKACGAVRY---GDFTLASGKKSKYYIDIKKASTDPKTLKLIARQAALRIKE----MDVDTIAGVEL 82 (187) T ss_pred CCHHHHHHHHHHHHHHCCCEEE---CEEEECCCCCCCHHCCCHHHHCCHHHHHHHHHHHHHHCCC----CCCCEEECCCC T ss_conf 7778999999999998899696---9289477576712351944547899999999999984411----49877943110 Q ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC Q ss_conf 12578899985158717876315642011001331037334144087887322369999999986598785688887417 Q gi|254781011|r 87 AGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD 166 (228) Q Consensus 87 ~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~ 166 (228) ||||+|+.+|..+++|++|+||++|+||+++++||.+.+|+||+|||||+|||+|+++++++++++|++|++++|++ | T Consensus 83 Ggipla~~va~~~~~p~~~vRke~K~~G~~~~ieG~~~~g~rVlvVEDViTTGgS~~eai~~l~~~G~~V~~v~~iv--D 160 (187) T PRK13810 83 GGVPLATAVSLETGLPLLIVRKSVKDYGTKSRFVGDLKPEDRIVMLEDVTTSGGSVRDAIEVVREAGAIVKYVITVV--D 160 (187) T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE--E T ss_conf 12799999999819986999833776443435885047998899998543568239999999998899799999999--7 Q ss_pred CCHHHHHHHHHCCCEEEEECCHHHHHH Q ss_conf 632489999977980999632999999 Q gi|254781011|r 167 IFPEVPARFRENNIKLHYLATWNDILT 193 (228) Q Consensus 167 ~~~~~~~~l~~~gi~~~sl~t~~~il~ 193 (228) |.+++.++++++|++++||+|++||++ T Consensus 161 R~~g~~e~l~~~gv~~~sl~t~~dlle 187 (187) T PRK13810 161 REEGATENLKEADVELVPLVSASDLLK 187 (187) T ss_pred CCCCHHHHHHHCCCCEEEECCHHHHHC T ss_conf 784769999977990999461989619 No 5 >COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism] Probab=100.00 E-value=0 Score=341.59 Aligned_cols=197 Identities=29% Similarity=0.419 Sum_probs=184.4 Q ss_pred HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH Q ss_conf 99999999986597682078986731187264014262135798999999999999866421756667899822312578 Q gi|254781011|r 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPF 91 (228) Q Consensus 12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~ 91 (228) +++++++.|++.+|++| |+|+|+||++||||||+|+++++|+.++.++..+++.+.+. .++|+|+|||++|||+ T Consensus 2 ~~~~~~~~l~~~~a~~f---G~f~LsSG~~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~---~~~d~v~G~a~ggiP~ 75 (201) T COG0461 2 YKRELAELLLEKGALKF---GEFTLSSGRKSPYYVDLRLFLTGPELLQLIAFALAEIIKEA---LEFDVVAGPALGGIPL 75 (201) T ss_pred HHHHHHHHHHHCCCEEC---CCEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCC---CCCCEEEECCCCCHHH T ss_conf 36999999997597561---75542578857768865210479889999999999975416---7876897523345489 Q ss_pred HHHHHHHC-CCC-EEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH Q ss_conf 89998515-871-7876315642011001331037334144087887322369999999986598785688887417632 Q gi|254781011|r 92 ATLLAERL-NLP-MIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP 169 (228) Q Consensus 92 a~~iA~~l-~~p-~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~ 169 (228) |+++|..+ ..| |+|+||++|+||+++++||...+|+||+|||||+|||+|+++++++||++|++|.++++++||+ + T Consensus 76 A~~~a~~l~~~~~~~~~Rke~K~hG~~~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~--~ 153 (201) T COG0461 76 AAATALALAHLPPMAYVRKEAKDHGTGGLIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQ--S 153 (201) T ss_pred HHHHHHHHCCCCCEEEEECEECCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEECC--H T ss_conf 99999984548827998220004787651574378998999997201678769999999998698598999999520--6 Q ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 48999997798099963299999999988899989999999999729 Q gi|254781011|r 170 EVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNP 216 (228) Q Consensus 170 ~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP 216 (228) ++.+.++++|++++||+|++|+++++.+.+.++.+......+|..+| T Consensus 154 ~~~~~~~~~g~~~~sl~tl~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (201) T COG0461 154 GAKEVLKEYGVKLVSLVTLSDLLEVLYEAGDIPLEELAIPAEAYRSR 200 (201) T ss_pred HHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHCCC T ss_conf 67888986599668874699999998752689878887899752247 No 6 >PRK13812 orotate phosphoribosyltransferase; Provisional Probab=100.00 E-value=0 Score=337.79 Aligned_cols=170 Identities=25% Similarity=0.379 Sum_probs=162.0 Q ss_pred HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH Q ss_conf 99999999865976820789867311872640142621357989999999999998664217566678998223125788 Q gi|254781011|r 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFA 92 (228) Q Consensus 13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a 92 (228) ++++++.|++++|++| |||+|+||++||||||||+++++|+.+.++++.+++.+.+ .+.|+|+|+||||+| T Consensus 3 ~~~li~~l~e~~al~~---G~F~L~SG~~S~~Y~d~~~~~~~P~~~~~i~~~~~~~i~~------~~~i~G~~~ggip~a 73 (174) T PRK13812 3 TDDLVAALRDADAVQF---GEFELSHGGTSEYYVDKYLFETDPECLSAIAAAFADRIDE------DTTLAGVALGAVPLV 73 (174) T ss_pred HHHHHHHHHHCCCEEE---CEEEECCCCCCHHHCCCCHHHCCHHHHHHHHHHHHHHHCC------CCEEECCCCCCHHHH T ss_conf 7999999998898696---6389477885723443804417999999999999986042------163867552439999 Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHH Q ss_conf 99985158717876315642011001331037334144087887322369999999986598785688887417632489 Q gi|254781011|r 93 TLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVP 172 (228) Q Consensus 93 ~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~ 172 (228) +.+|..+++|++|+||++|+||+++++||.+.+|+||+|||||+|||+|+++++++++++|++|.+++|++ ||.+++. T Consensus 74 ~~ia~~~~~p~~~vRke~K~hG~~~~ieG~~~~g~rVlivEDViTTG~S~~eai~~l~~~G~~V~~v~viv--DR~eg~~ 151 (174) T PRK13812 74 AATATEAGVPYVIARKQAKEYGTGNRIEGRLDDGEEVVVLEDIATTGQSAVDAVEALRDAGATVNRVLVVV--DREEGAR 151 (174) T ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE--ECCCCHH T ss_conf 99999829988999843677664430313235786699998644578019999999998799799999999--7785658 Q ss_pred HHHHHCCCEEEEECCHHHHHH Q ss_conf 999977980999632999999 Q gi|254781011|r 173 ARFRENNIKLHYLATWNDILT 193 (228) Q Consensus 173 ~~l~~~gi~~~sl~t~~~il~ 193 (228) ++++++|+++|||+|++||+. T Consensus 152 e~l~~~gv~~~sl~t~~dlla 172 (174) T PRK13812 152 ENLAEHDVEMEALVTASDLLA 172 (174) T ss_pred HHHHHCCCEEEEEECHHHHHC T ss_conf 999977980999702999714 No 7 >PRK13811 orotate phosphoribosyltransferase; Provisional Probab=100.00 E-value=0 Score=337.27 Aligned_cols=169 Identities=29% Similarity=0.451 Sum_probs=159.4 Q ss_pred HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH Q ss_conf 99999999986597682078986731187264014262135798999999999999866421756667899822312578 Q gi|254781011|r 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPF 91 (228) Q Consensus 12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~ 91 (228) |+++++++|++++|++| |||+|+||++||||||||+++++|+.+..++..+++ . .++|.|+|||+||||+ T Consensus 1 M~~~~~e~L~~~~al~~---G~F~L~SG~~S~~Y~d~~~~~~~P~~~~~i~~~l~~----~---~~~d~I~G~a~ggipl 70 (170) T PRK13811 1 MVNTIADLLISYKAIEF---GDFTLASGAKSTYYIDIKTAITSPAILKEIAAEVAK----S---YDFDAVAGVAVGGVPL 70 (170) T ss_pred CHHHHHHHHHHCCCEEE---CCEEECCCCCCCEEECCCHHHCCHHHHHHHHHHHHC----C---CCCCEEECCCHHHHHH T ss_conf 91899999997899696---968817647785025490366499999999999853----7---7988997141007999 Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHH Q ss_conf 89998515871787631564201100133103733414408788732236999999998659878568888741763248 Q gi|254781011|r 92 ATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEV 171 (228) Q Consensus 92 a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~ 171 (228) |+.+|..+++|++|+||++|+||+++++||.+ +|+||+|||||+|||+|+++++++++++|++|++++|++ ||.+++ T Consensus 71 a~~va~~~~~p~~~vRke~K~~G~~~~ieG~~-~G~~VlvVEDViTTG~S~~e~i~~l~~~G~~V~~v~~iv--DR~eg~ 147 (170) T PRK13811 71 AVAVSLASDKPYAIIRKEQKDHGKASLIIGDV-AGKRVLLVEDVTTSGGSALYGIEQLRSAGAVVDDVVTVV--DREEGA 147 (170) T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEE--ECCCCH T ss_conf 99999983998799997455413455201234-899899999644578118999999998899799999999--777477 Q ss_pred HHHHHHCCCEEEEECCHHHHHH Q ss_conf 9999977980999632999999 Q gi|254781011|r 172 PARFRENNIKLHYLATWNDILT 193 (228) Q Consensus 172 ~~~l~~~gi~~~sl~t~~~il~ 193 (228) .+++++.|+++|||+|++|+++ T Consensus 148 ~e~l~~~Gv~~~sl~t~~dlld 169 (170) T PRK13811 148 EELLAELDITLTPLVRVSELLN 169 (170) T ss_pred HHHHHHCCCEEEEEEEHHHHHC T ss_conf 9999966990999532899428 No 8 >TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process. Probab=100.00 E-value=0 Score=328.16 Aligned_cols=170 Identities=32% Similarity=0.579 Sum_probs=157.8 Q ss_pred HHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHH Q ss_conf 99986597682078986731187264014262135798999999999999866421756667899822312578899985 Q gi|254781011|r 18 KMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAE 97 (228) Q Consensus 18 ~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~ 97 (228) ++|++++|++|+|..||+|+||++||||||.++..+.|+.++.+...++..+.+++ +++|+|+|+|++|||+|+++|. T Consensus 1 ~~lle~~al~frPG~PF~L~SG~~S~yy~d~kl~~t~~~~~~~~~~~~~~~~~~~l--Pe~d~iaG~alggiPiA~~vs~ 78 (187) T TIGR00336 1 ELLLEVQALKFRPGEPFILSSGRKSPYYFDIKLANTGPELANLIAEYIAAIIKDHL--PEFDVIAGPALGGIPIATAVSV 78 (187) T ss_pred CCCCCCCEEEECCCCCCEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHH T ss_conf 93100330452685963416886055378212301668999999999999864128--9524664242352258999999 Q ss_pred HCCCC---------EEEEECCCCCCHHHHHHHH-CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC Q ss_conf 15871---------7876315642011001331-0373341440878873223699999999865987856888874176 Q gi|254781011|r 98 RLNLP---------MIYVRKKSKKHGQKSQIEG-HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDI 167 (228) Q Consensus 98 ~l~~p---------~~~vRK~~K~hG~~~~iEG-~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~ 167 (228) .+..| ++|+|||+|+||+++.||| ...+|+||+|||||+|||+|+++|++.|+++|++|.++++++||+ T Consensus 79 ~~~~~~~~kf~~~~~~~~RKe~KdhG~g~~i~GP~~~eG~kvvvveDV~TtG~s~~~A~~~i~~ag~~V~~v~~~vDR~- 157 (187) T TIGR00336 79 KLAKPEGSKFLDIPLLIVRKEAKDHGEGGNIEGPELLEGDKVVVVEDVITTGGSILEAVEAIQEAGGEVAGVIVIVDRQ- 157 (187) T ss_pred HHHCCCCCCCCCEEEEEEECCCCCCCCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECC- T ss_conf 9835588600050489983361455689814567657896389995143424799999999986188899999998267- Q ss_pred CH------HHHHHHHHC-CCEEEEECCHHHH Q ss_conf 32------489999977-9809996329999 Q gi|254781011|r 168 FP------EVPARFREN-NIKLHYLATWNDI 191 (228) Q Consensus 168 ~~------~~~~~l~~~-gi~~~sl~t~~~i 191 (228) + +|.+++.+. |+++.||+++.|+ T Consensus 158 -e~~~~E~~A~~~f~~~y~~~~~sl~~~~d~ 187 (187) T TIGR00336 158 -ERGKGELSAGQEFEKEYGLPLISLITLKDL 187 (187) T ss_pred -CCCCCCCCHHHHHHHHHCCEEEEEEEEECC T ss_conf -243310133455465528644323132129 No 9 >TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process. Probab=100.00 E-value=4.6e-35 Score=249.51 Aligned_cols=165 Identities=23% Similarity=0.326 Sum_probs=143.3 Q ss_pred HHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHH Q ss_conf 99999865976820789867311872640142621357989999999999998664217566678998223125788999 Q gi|254781011|r 16 VAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLL 95 (228) Q Consensus 16 ~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~i 95 (228) +-+++-++||.. +|||.|+||+|||||+|+.+++.+|+....+++.|+++|..... ++|.|+|||+|||.+++.+ T Consensus 2 v~~~y~~aGA~~---EGhFlLsSG~hS~~flQ~~~ll~~P~~~~~lg~~LA~~i~~~~~--~~d~ivsPA~GGv~~~Ye~ 76 (205) T TIGR01367 2 VLDIYKKAGALL---EGHFLLSSGKHSPYFLQSAKLLEDPELAEKLGEELAKKILKYKL--EVDVIVSPAMGGVILGYEV 76 (205) T ss_pred HHHHHHHCCCCC---CCCEEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--CCCEEECCCCCHHHHHHHH T ss_conf 358887717421---37122405761423665656761636899999999999998278--7015864730004688899 Q ss_pred HHHCC-----CCEEEEECCCCCCHHHHHHHH-CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH Q ss_conf 85158-----717876315642011001331-037334144087887322369999999986598785688887417632 Q gi|254781011|r 96 AERLN-----LPMIYVRKKSKKHGQKSQIEG-HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP 169 (228) Q Consensus 96 A~~l~-----~p~~~vRK~~K~hG~~~~iEG-~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~ 169 (228) |..++ +|++|+-|+. .|..++.+| .+++|++|++||||+|||+|++++|++|++.|++|+++++|+||+ |. T Consensus 77 AR~L~etlPd~R~iF~Er~g--sg~mkLRrgF~v~pGek~v~vEDvvTTGGS~~e~~~~i~~~GG~vvg~a~iidRG-fC 153 (205) T TIGR01367 77 ARALSETLPDVRSIFAEREG--SGGMKLRRGFEVKPGEKVVVVEDVVTTGGSLLEAIKAIEELGGQVVGLACIIDRG-FC 153 (205) T ss_pred HHHHHHCCCCCCEEEEEEEC--CCCCEECCCEEECCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEHHCCC-HH T ss_conf 98741006888526777607--8752011120336997799996211047448999999985798279842112041-11 Q ss_pred HHHHHH---------HHCCCEEEEECCHH Q ss_conf 489999---------97798099963299 Q gi|254781011|r 170 EVPARF---------RENNIKLHYLATWN 189 (228) Q Consensus 170 ~~~~~l---------~~~gi~~~sl~t~~ 189 (228) . -++. .+.|+|+.||..++ T Consensus 154 a-ven~~sPrkd~~k~~~g~PL~sL~~L~ 181 (205) T TIGR01367 154 A-VENSKSPRKDGGKVDVGVPLISLKELE 181 (205) T ss_pred H-HHCCCCCCCCCCCCCCCCHHHHHHHCC T ss_conf 1-110368632478888775156564236 No 10 >PRK02277 orotate phosphoribosyltransferase-like protein; Provisional Probab=99.92 E-value=9.1e-25 Score=182.35 Aligned_cols=169 Identities=19% Similarity=0.224 Sum_probs=137.9 Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 89897899999999998659768207898673118726401426213579899999999999986642175666789982 Q gi|254781011|r 5 YFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGG 84 (228) Q Consensus 5 ~~~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~ 84 (228) ..-|+.+++++++.||+.... + ..++-.-.++|+|+|.+-+++..+..|+..|++++.++....+||.|+|+ T Consensus 23 eIAdELnvS~eT~~WLl~~~~------~--~~~~~~P~Di~v~W~sig~~~~Rl~~Ia~~maD~~~e~~~~~evD~vvGI 94 (201) T PRK02277 23 EIADELNVSRETATWLLTRSK------K--LEKAPAPKDIHIDWSSVGKSSSRLRYIALAMADMLLLNKEGVEVDVVVGI 94 (201) T ss_pred HHHHHHHHHHHHHHHHHHCCC------C--CCCCCCCCCEEECCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 635554026999999983476------7--66788996268778255777789999999999999875337876479875 Q ss_pred CCCHHHHHHHHHHHCCCCEEE------EECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 231257889998515871787------63156420110013310373341440878873223699999999865987856 Q gi|254781011|r 85 ETAGIPFATLLAERLNLPMIY------VRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228) Q Consensus 85 a~~Gip~a~~iA~~l~~p~~~------vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228) +++|||||+++|..++..|.. .|++.|.||..+..-|.+ .|+||+|||||+|||+|+.+++++++++|+++++ T Consensus 95 a~~GIPlAt~vA~~l~~~l~iy~P~k~~~~e~~~~G~~s~nfa~V-~Gk~VlIVDDViTTG~T~~e~ie~l~~~Ga~vv~ 173 (201) T PRK02277 95 AISGVPLATLMADELGKDLAIYHPKKHQHDEGKKTGSISRNFASV-AGKRCVIVDDVITSGNTMKETIEYLKEHGAKPVA 173 (201) T ss_pred CCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 236841899999985276115613555666678776213410343-7878999970237782499999999986997999 Q ss_pred EEEEEECCCCHHHHHHHHHCCCEEEEECCH Q ss_conf 888874176324899999779809996329 Q gi|254781011|r 159 GIGLFFYDIFPEVPARFRENNIKLHYLATW 188 (228) Q Consensus 159 ~~vii~~~~~~~~~~~l~~~gi~~~sl~t~ 188 (228) ++|++|+. +.. +-.|+|++||+.. T Consensus 174 ~~VlvDk~---g~~---ei~gVPl~sLiri 197 (201) T PRK02277 174 VVVLVDKR---GID---EIDGVPVESLFRI 197 (201) T ss_pred EEEEEECC---CCC---CCCCCCCHHEEEE T ss_conf 99999789---886---4569763233898 No 11 >TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes.AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage. Probab=99.90 E-value=1.6e-23 Score=174.32 Aligned_cols=154 Identities=25% Similarity=0.410 Sum_probs=134.1 Q ss_pred CEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--EEEEECCCHHHHHHHHHHHCCCC Q ss_conf 7682078986731187264014262135798999999999999866421756667--89982231257889998515871 Q gi|254781011|r 25 AVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESID--IIAGGETAGIPFATLLAERLNLP 102 (228) Q Consensus 25 ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d--~I~G~a~~Gip~a~~iA~~l~~p 102 (228) +||-.|+-| +-|. .|-|-..++.+|+.++.+++.|++.+.+... .+| .|+|++.+|.-|++++|++||+| T Consensus 4 ~Ir~ipDfP---~~GI---lFrDITplL~~~~~f~~~id~l~~~~~~~~~--~id~d~iVG~EaRGFifG~~LA~~LgvG 75 (175) T TIGR01090 4 SIRSIPDFP---KKGI---LFRDITPLLNNPELFRFLIDLLVERYKDANG--EIDADLIVGLEARGFIFGAALAYKLGVG 75 (175) T ss_pred CCCCCCCCC---CCCE---EEEECCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCHHHHHHHHHHHHCCC T ss_conf 256257887---7966---7766170106877899999999999986079--5151368767667257788999970898 Q ss_pred EEEEECCCC------------CCHHHHHHH---HCCC-CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC Q ss_conf 787631564------------201100133---1037-334144087887322369999999986598785688887417 Q gi|254781011|r 103 MIYVRKKSK------------KHGQKSQIE---GHLF-KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD 166 (228) Q Consensus 103 ~~~vRK~~K------------~hG~~~~iE---G~~~-~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~ 166 (228) |+-|||..| +||+. .+| ..++ +|+|||||||++.||||+..++++|++.|++|++++-++.-. T Consensus 76 FVPVRK~GKLP~~t~~~~Y~LEYG~d-~lEIh~DA~~~~g~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~aFliEL~ 154 (175) T TIGR01090 76 FVPVRKPGKLPGETVSASYDLEYGKD-SLEIHKDAIKIPGQRVLIVDDLLATGGTAEATLELIKKLGGEVVEAAFLIELK 154 (175) T ss_pred EEEEECCCCCCCCEEEEEECEECCCC-EEEEEHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEEEECC T ss_conf 06754787668422667403004730-35341113640789089983220126789999999998596168745554224 Q ss_pred CCHHHHHHHHHCCCEEEEECCH Q ss_conf 6324899999779809996329 Q gi|254781011|r 167 IFPEVPARFRENNIKLHYLATW 188 (228) Q Consensus 167 ~~~~~~~~l~~~gi~~~sl~t~ 188 (228) +-.|+++|++.+++++||+.+ T Consensus 155 -~L~G~~~L~~~~~~~~~Ll~~ 175 (175) T TIGR01090 155 -DLNGRKKLEPNGVPVFSLLEY 175 (175) T ss_pred -CCCCHHHHHCCCCCEEEEEEC T ss_conf -478521001036857898509 No 12 >PRK02304 adenine phosphoribosyltransferase; Provisional Probab=99.90 E-value=1.5e-23 Score=174.50 Aligned_cols=144 Identities=23% Similarity=0.327 Sum_probs=125.3 Q ss_pred ECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC----- Q ss_conf 118726401426213579899999999999986642175666789982231257889998515871787631564----- Q gi|254781011|r 37 TSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK----- 111 (228) Q Consensus 37 ~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K----- 111 (228) +-|. .|-|...++.+|+.++.+++.+++.+.. .++|+|+|++.+|+++|+++|.++++||+++||+.| T Consensus 17 ~~Gi---~F~Ditpll~dp~~~~~~~~~l~~~~~~----~~vD~IvgiEarGfi~a~alA~~l~~p~v~iRK~gKLPg~~ 89 (174) T PRK02304 17 KPGI---LFRDITPLLADPEALREVIDALVERYKD----ADIDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPGET 89 (174) T ss_pred CCCC---EEEECHHHHCCHHHHHHHHHHHHHHHCC----CCCCEEEEECCCCEECCHHHHHHHCCCEEEEECCCCCCCCE T ss_conf 9994---6885824765999999999999998434----89989999865552101588998299879997289899856 Q ss_pred -------CCHHHHH-H-HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEE Q ss_conf -------2011001-3-310373341440878873223699999999865987856888874176324899999779809 Q gi|254781011|r 112 -------KHGQKSQ-I-EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKL 182 (228) Q Consensus 112 -------~hG~~~~-i-EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~ 182 (228) +||+... + .+.+.+|+||+||||+++||||+..++++++++|++|++++++++.. +.+++++|+ .|+++ T Consensus 90 ~s~~y~lEYG~~~lei~~~~i~~g~~VlivDDvlaTGGT~~a~~~Lv~~~ga~v~~~~~liel~-~l~G~~~L~-~~~~v 167 (174) T PRK02304 90 ISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELP-DLGGREKLE-AGYPV 167 (174) T ss_pred EEEEEECCCCCEEEEEEECCCCCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCEEEEEEEEEECC-CCCCHHHHC-CCCCE T ss_conf 4512673676216999823558999999997154307179999999998799899999999818-788488746-99946 Q ss_pred EEECCHH Q ss_conf 9963299 Q gi|254781011|r 183 HYLATWN 189 (228) Q Consensus 183 ~sl~t~~ 189 (228) +||+.++ T Consensus 168 ~sLi~y~ 174 (174) T PRK02304 168 YSLVKFE 174 (174) T ss_pred EEEEEEC T ss_conf 8999869 No 13 >PRK12560 adenine phosphoribosyltransferase; Provisional Probab=99.88 E-value=2.1e-22 Score=166.92 Aligned_cols=147 Identities=20% Similarity=0.206 Sum_probs=112.2 Q ss_pred EECCCCCCEEEE---CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 311872640142---62135798999999999999866421756667899822312578899985158717876315642 Q gi|254781011|r 36 LTSGIVSPLYID---CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKK 112 (228) Q Consensus 36 L~SG~~Sp~Y~d---~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~ 112 (228) .+||. .+||+. --.=...|+.+..++..+.+ ..+ .++|.|+|+|++|||+|+++|...++|++++||.+.+ T Consensus 10 v~~g~-~~~~ihpitDgvP~l~p~~l~~i~~~ii~----~~D-~~iDkIv~iEa~GipiatalSl~t~iPlviiRKr~yg 83 (184) T PRK12560 10 VNSGK-ALTTVNEFTDQLPALRPAVLLEVAHKVIQ----IID-MDIDKIVTEEDKGAPLATAVSLLSGKPLAMARWYPYS 83 (184) T ss_pred EECCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHH----HCC-CCCCEEEEHHHCCCHHHHHHHHHHCCCEEEEECCCCC T ss_conf 65065-42475676688757798999999999998----616-6876897413356388999999759988999814678 Q ss_pred --------------CHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH-HHH Q ss_conf --------------01100133103733414408788732236999999998659878568888741763248999-997 Q gi|254781011|r 113 --------------HGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR-FRE 177 (228) Q Consensus 113 --------------hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~-l~~ 177 (228) |.++....+.+.+|+||+|||||++||||+..++++++++|++|+++++++++. ++.|+++ +++ T Consensus 84 l~~~~e~~~~~~Tgys~g~iy~n~I~~GdrVlIVDDvlaTGGTl~a~~~ll~~~Ga~V~~i~~vIEk~-~~~Gr~~l~~~ 162 (184) T PRK12560 84 LSELNNNVVNISSEYFEGVVYLNGISAGDRVAIIDDTLSTGGTVIALIKAIQNSGGIVKDLICAVEKI-QNNGKKNIFTQ 162 (184) T ss_pred CCCCCEEEEEEECCEEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECC-CCCCHHHHHHC T ss_conf 88785288875155577689704679999899995120567589999999998699899999999816-65657777552 Q ss_pred CCCEEEEECCHH Q ss_conf 798099963299 Q gi|254781011|r 178 NNIKLHYLATWN 189 (228) Q Consensus 178 ~gi~~~sl~t~~ 189 (228) .|+++.||.+++ T Consensus 163 ~G~~v~sLv~I~ 174 (184) T PRK12560 163 TGINVKTLMKIS 174 (184) T ss_pred CCCCEEEEEEEE T ss_conf 598458999999 No 14 >PRK08558 adenine phosphoribosyltransferase; Provisional Probab=99.86 E-value=6.5e-21 Score=157.21 Aligned_cols=139 Identities=22% Similarity=0.311 Sum_probs=118.8 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH---- Q ss_conf 1426213579899999999999986642175666789982231257889998515871787631564201100133---- Q gi|254781011|r 45 YIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE---- 120 (228) Q Consensus 45 Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iE---- 120 (228) |+|+..++++|..++++...++..+.. .++|.|..+|++|||+|+++|..++.|++++||. |+-|..+.++ T Consensus 83 yid~s~il~dP~~L~l~~~~~a~rF~~----~~idkVlT~at~GIplA~~~A~~l~vplviakk~-k~~~~~~~~~~~v~ 157 (238) T PRK08558 83 YVDNMSVVSDPSLLRLYEEYVAERFMG----LRVDKVLTAATDGIPLAVAAASRFGADLVYAKQY-KEPGVEKFYEEYQY 157 (238) T ss_pred EEEEHHHHCCHHHHHHHHHHHHHHHCC----CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEC-CCCCCCCEEEEEEE T ss_conf 697278756989999999999998177----8985899846888539999999809978999813-67774652899997 Q ss_pred -------------HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECC Q ss_conf -------------1037334144087887322369999999986598785688887417632489999977980999632 Q gi|254781011|r 121 -------------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLAT 187 (228) Q Consensus 121 -------------G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t 187 (228) ..+.+|+||+||||++.||+|+..++++++++|++|+|+++++..+ ..++++.++++|+++.+|++ T Consensus 158 ~~~~~~~tl~l~k~~l~~g~~VLIVDD~~~tG~T~~~~~~l~~~~ga~v~G~~~li~~~-~~~~~~~~e~~~~pV~~l~~ 236 (238) T PRK08558 158 LASGRPVTLYLPAWALKRGERVLIVDDIIRSGETQRALLELCRQAGADVVGVFFLIAVG-DVGIDRLREEYNFPVDALYT 236 (238) T ss_pred CCCCCEEEEEEEHHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEECC-CHHHHHHHHHCCCCEEEEEE T ss_conf 48995799995589979998699983563437389999999998699799999999847-33778888761996589985 Q ss_pred HH Q ss_conf 99 Q gi|254781011|r 188 WN 189 (228) Q Consensus 188 ~~ 189 (228) ++ T Consensus 237 ~e 238 (238) T PRK08558 237 LE 238 (238) T ss_pred CC T ss_conf 39 No 15 >PRK09219 xanthine phosphoribosyltransferase; Validated Probab=99.86 E-value=1.4e-20 Score=155.06 Aligned_cols=133 Identities=19% Similarity=0.241 Sum_probs=113.3 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC-----------CH-HHHHH-- Q ss_conf 98999999999999866421756667899822312578899985158717876315642-----------01-10013-- Q gi|254781011|r 54 FVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKK-----------HG-QKSQI-- 119 (228) Q Consensus 54 ~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~-----------hG-~~~~i-- 119 (228) +|.+++.+.+.+++.+.. .++|.|+++|++|||+|+++|..+++|++++||..+- |+ +++.. T Consensus 31 Dp~l~~~iG~~fa~~F~~----~~IdkIvTiEasGI~~A~~~A~~l~vPlV~aRK~~~~t~~~~~~~~~v~S~Tk~~~~~ 106 (189) T PRK09219 31 DPKLMNEIGKEFARRFKD----AGITKILTIEASGIAPAVMAALALGVPVVFAKKKKSLTLTDNVYTATVYSFTKQVTST 106 (189) T ss_pred CHHHHHHHHHHHHHHHCC----CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEE T ss_conf 999999999999998457----8998899984158578999999859999999736886788976899999315670899 Q ss_pred --H--HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHH Q ss_conf --3--10373341440878873223699999999865987856888874176324899999779809996329999 Q gi|254781011|r 120 --E--GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191 (228) Q Consensus 120 --E--G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~i 191 (228) . -.+.+|+||+||||+++||+|+...+++++++||+|+++.+++... |++|++.+++.|++++||+.++.+ T Consensus 107 ~~vsk~~l~~gdrVliIDDflatGgt~~~~~~l~~~~ga~v~g~~~viEk~-fq~Gr~~l~~~g~~v~sLa~I~~~ 181 (189) T PRK09219 107 VSVSKKFLSEEDKVLIIDDFLANGQAALGLIDIIEQAGAEVAGVGIVIEKS-FQDGRKLLEDKGYRVESLARIASL 181 (189) T ss_pred EEEEHHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEEEC-CCCHHHHHHHCCCCEEEEEEEEEE T ss_conf 997465479987599874545446789999999998799899999999936-756389998789966989999997 No 16 >COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism] Probab=99.83 E-value=4.6e-20 Score=151.67 Aligned_cols=144 Identities=24% Similarity=0.384 Sum_probs=119.8 Q ss_pred ECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC---- Q ss_conf 1187264014262135798999999999999866421756667899822312578899985158717876315642---- Q gi|254781011|r 37 TSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKK---- 112 (228) Q Consensus 37 ~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~---- 112 (228) ++|. .|+|.-.++++|......++.+++.+.. .++|.|+|++.+|+|+|+++|.++++||+++||..|- T Consensus 20 ~~g~---~f~d~~~~~~~~~~~~~~i~~~~~~~~~----~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~ 92 (179) T COG0503 20 KGGI---LFVDITLLLGDPELLAKLIDELAERYKD----DGIDKIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEES 92 (179) T ss_pred CCCE---EEEEECHHHCCCHHHHHHHHHHHHHHCC----CCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCC T ss_conf 7771---6897104426717899999999998400----59989999737784049999998599889999568788643 Q ss_pred --------CHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEE Q ss_conf --------01100--13310373341440878873223699999999865987856888874176324899999779809 Q gi|254781011|r 113 --------HGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKL 182 (228) Q Consensus 113 --------hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~ 182 (228) +|... ...+.+.+|+||+||||++.||||+...+++++++|++|+++.+++... +..++..+...++++ T Consensus 93 ~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~-~~~gr~~l~~~~~~v 171 (179) T COG0503 93 VVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELG-ELDGRKKLEDDGLPV 171 (179) T ss_pred EEEEEEECCCEEEEEEEHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEC-CCCCCEECCCCCEEE T ss_conf 5789986064179998720068999899996540156789999999998899899999999724-555502034586227 Q ss_pred EEECCH Q ss_conf 996329 Q gi|254781011|r 183 HYLATW 188 (228) Q Consensus 183 ~sl~t~ 188 (228) .++..+ T Consensus 172 ~~l~~~ 177 (179) T COG0503 172 FSLVRI 177 (179) T ss_pred EEEEEC T ss_conf 997611 No 17 >COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism] Probab=99.82 E-value=6.1e-20 Score=150.88 Aligned_cols=167 Identities=20% Similarity=0.346 Sum_probs=129.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCC--CEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 89897899999999998659768207898673118726--4014262135798999999999999866421756667899 Q gi|254781011|r 5 YFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVS--PLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIA 82 (228) Q Consensus 5 ~~~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~S--p~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~ 82 (228) ..-|+.+.+.+++.||+. ++ |+ .-+..+ ++|+|+|.+-..+..+..|..+|++++.+... .++|.|+ T Consensus 23 EIAdELNvSreTa~WL~~-r~--------~~-~~~~~~p~Di~i~W~siG~s~sRl~~Is~am~Dm~m~~~~-~evDvVv 91 (203) T COG0856 23 EIADELNVSRETATWLLT-RA--------FK-KESVPAPVDIKIDWRSIGKSGSRLRYISEAMADMIMEKVS-FEVDVVV 91 (203) T ss_pred HHHHHHCCHHHHHHHHHH-HH--------HH-CCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHC-CCEEEEE T ss_conf 767664104877888875-44--------31-1478887525873267256347899999999889998605-4046899 Q ss_pred EECCCHHHHHHHHHHHCCCCE-EEE-ECCCCCCHHH--HHHHHCC--CCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 822312578899985158717-876-3156420110--0133103--733414408788732236999999998659878 Q gi|254781011|r 83 GGETAGIPFATLLAERLNLPM-IYV-RKKSKKHGQK--SQIEGHL--FKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 (228) Q Consensus 83 G~a~~Gip~a~~iA~~l~~p~-~~v-RK~~K~hG~~--~~iEG~~--~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V 156 (228) |+|..|+|+|+++|+.|+..| +|. ||..|+-|.. +.+--+| .+|+||+|||||+|||.|+.++|+.|+++|++. T Consensus 92 GIa~sGvPlAt~vA~elg~elaiY~PrK~~~de~~~~~G~iS~NFasV~gK~cvIVDDvittG~Ti~E~Ie~l~e~g~kP 171 (203) T COG0856 92 GIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVITTGSTIKETIEQLKEEGGKP 171 (203) T ss_pred EEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC T ss_conf 88506862899999973784699813566543357767623123211157548998322256721999999999759974 Q ss_pred EEEEEEEECCCCHHHHHHHHHCCCEEEEECCH Q ss_conf 56888874176324899999779809996329 Q gi|254781011|r 157 QDGIGLFFYDIFPEVPARFRENNIKLHYLATW 188 (228) Q Consensus 157 ~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~ 188 (228) +.|.|+++.. +.. +=.|+++.||+.+ T Consensus 172 v~v~VL~dK~---G~~---ei~gvPi~sLiri 197 (203) T COG0856 172 VLVVVLADKK---GVD---EIEGVPVESLLRI 197 (203) T ss_pred EEEEEEECCC---CCC---CCCCCCHHHHHHE T ss_conf 7999997267---765---3368445784420 No 18 >PRK07322 adenine phosphoribosyltransferase; Provisional Probab=99.81 E-value=2e-19 Score=147.59 Aligned_cols=117 Identities=24% Similarity=0.390 Sum_probs=98.1 Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH---- Q ss_conf 1426213579899999999999986642175666789982231257889998515871787631564201100133---- Q gi|254781011|r 45 YIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE---- 120 (228) Q Consensus 45 Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iE---- 120 (228) .+..-.++.+++..+..++.++..+. .++|+|+|++++|||+|+.+|.++++||+++||..|.|......+ T Consensus 25 ~ia~~~~lGD~El~~~~a~~la~~~p-----~~vD~Ivt~EarGiplA~~lA~~Lg~p~V~vRK~~K~ym~~~~~~~~~S 99 (178) T PRK07322 25 AIASFVILGDTELTEAAAEALAPRLP-----TEVDVLVTAEAKGIPLAHELSRILGLPYVVARKSVKPYMQDPLIQEVLS 99 (178) T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCC-----CCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEE T ss_conf 58999971878999999999997679-----9887999864314588999999979998999857876788877899888 Q ss_pred ------------H---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC Q ss_conf ------------1---037334144087887322369999999986598785688887417 Q gi|254781011|r 121 ------------G---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD 166 (228) Q Consensus 121 ------------G---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~ 166 (228) + ...+|+||+|||||++||||+..+.++++++|++|+++++++..+ T Consensus 100 itt~~~q~l~ld~~~~~~l~G~rVlivDDvi~tGgt~~a~~~l~~~~Ga~vvg~~ai~~eG 160 (178) T PRK07322 100 ITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGSLTAMERLVERAGGEVVAKAAILAEG 160 (178) T ss_pred EEECCCEEEEEECHHHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHCCCEEEEEEEEEEEC T ss_conf 7504553898500022113798599996344238379999999998699899999999756 No 19 >TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process. Probab=99.76 E-value=1.5e-18 Score=141.89 Aligned_cols=161 Identities=24% Similarity=0.369 Sum_probs=128.0 Q ss_pred CHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC Q ss_conf 97899999999998659768207898673118726401426213579899999999999986642175666789982231 Q gi|254781011|r 8 QQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETA 87 (228) Q Consensus 8 ~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~ 87 (228) +..++=+++-+.|-+..=| -| |.|.+.+= +++.|...++++..++..+.+. ++|+|.++||+ T Consensus 77 ~~~~fv~~l~~~l~~s~Ri--~P-GgflY~~D-----------ll~~Psi~ski~~ila~~F~d~----~ID~V~TV~TK 138 (269) T TIGR01743 77 EAKEFVEELCEKLSESERI--LP-GGFLYLTD-----------LLFKPSILSKIGKILASVFIDK----EIDAVMTVETK 138 (269) T ss_pred HHHHHHHHHHHHHCCCCCC--CC-CCHHHHHH-----------HHCCCCHHHHHHHHHHHHCCCC----CCCEEEEEECC T ss_conf 5688999999862288840--37-74755534-----------5417815777888875432685----57878995218 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCC---------CC--HHH-HHHHH------CCCCCCCEEEHHHHHHHHHHHHHHHHHH Q ss_conf 257889998515871787631564---------20--110-01331------0373341440878873223699999999 Q gi|254781011|r 88 GIPFATLLAERLNLPMIYVRKKSK---------KH--GQK-SQIEG------HLFKGARVLVIEDLVTLGNSMFEFVKVI 149 (228) Q Consensus 88 Gip~a~~iA~~l~~p~~~vRK~~K---------~h--G~~-~~iEG------~~~~g~~vliVDDviTtG~S~~~~i~~l 149 (228) |||+|..+|..||+|++.+||..| .| |.. +.|+- .+..|.|||+|||.+-.|||+-..+++| T Consensus 139 GvPLA~~~A~~LnV~lvivRkD~kvTEGStVSiNYVSGssG~~I~~M~LarrSLk~GS~vL~vDDFmkaGGT~~Gm~~LL 218 (269) T TIGR01743 139 GVPLAYAVAKVLNVPLVIVRKDSKVTEGSTVSINYVSGSSGDRIQKMSLARRSLKKGSKVLIVDDFMKAGGTVKGMIELL 218 (269) T ss_pred CHHHHHHHHHHCCCCEEEEECCCCEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHH T ss_conf 82389899876496179998468121053289955676874367888888888860890899953555487026788888 Q ss_pred HHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHH Q ss_conf 8659878568888741763248999997798099963299 Q gi|254781011|r 150 RDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWN 189 (228) Q Consensus 150 ~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~ 189 (228) +|..++|+|+.|++ |- +...+++.+.-+.+..|.+++ T Consensus 219 ~EFda~l~GiGVli--~~-~~~~~~~~~~Y~SLl~~~~i~ 255 (269) T TIGR01743 219 KEFDAELAGIGVLI--DN-EESEEKLVDDYVSLLKLKNIN 255 (269) T ss_pred HHHCCCCEEEEEEE--EC-CCCCCCHHHCCEEEEEEEEEE T ss_conf 76271102322133--23-553100010244467877753 No 20 >KOG1712 consensus Probab=99.75 E-value=5.3e-18 Score=138.25 Aligned_cols=156 Identities=22% Similarity=0.351 Sum_probs=129.9 Q ss_pred CCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE Q ss_conf 97682078986731187264014262135798999999999999866421756667899822312578899985158717 Q gi|254781011|r 24 KAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103 (228) Q Consensus 24 ~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~ 103 (228) .+++..|+ |- +-|. .|-|-..++.+|.+++.+++.+++.+++.. ..++|+|+|++.+|.-|+..+|..++.+| T Consensus 13 ~~ir~~pd--FP-k~GI---~F~Di~pll~dP~af~~lidlf~~h~~~~~-~~~Id~iaGlEaRGFLFGP~iAlalG~~f 85 (183) T KOG1712 13 TAIRVVPD--FP-KKGI---MFQDITPLLLDPKAFKKLIDLFVDHYRETF-EMKIDVIAGLEARGFLFGPSIALALGAGF 85 (183) T ss_pred HHHEECCC--CC-CCCE---EHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEEEECCEECCCHHHHHHCCCE T ss_conf 75040789--99-8860---020006664397999999999999999873-67612998541044002838999838975 Q ss_pred EEEECCCC------------CCHHHHH--HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH Q ss_conf 87631564------------2011001--331037334144087887322369999999986598785688887417632 Q gi|254781011|r 104 IYVRKKSK------------KHGQKSQ--IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP 169 (228) Q Consensus 104 ~~vRK~~K------------~hG~~~~--iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~ 169 (228) +-+||..| +||+... -.|.+++|+||+||||++.||||+..|.+++++.|++|+.++|++.-... T Consensus 86 VPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~L- 164 (183) T KOG1712 86 VPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPEL- 164 (183) T ss_pred EECCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCEEEEEECHHHCCCCHHHHHHHHHHHCCEEEEEEEEEECCCC- T ss_conf 6614689898754677876502700112112456998758998300113741899999999725478878999970653- Q ss_pred HHHHHHHHCCCEEEEECCHH Q ss_conf 48999997798099963299 Q gi|254781011|r 170 EVPARFRENNIKLHYLATWN 189 (228) Q Consensus 170 ~~~~~l~~~gi~~~sl~t~~ 189 (228) .|+++| .+.++++|+++. T Consensus 165 kGr~kL--~~~pl~~Ll~~~ 182 (183) T KOG1712 165 KGREKL--KGKPLFSLLEYQ 182 (183) T ss_pred CCCCCC--CCCCCEEEEECC T ss_conf 780005--898618996147 No 21 >PRK09213 purine operon repressor; Provisional Probab=99.75 E-value=2.7e-17 Score=133.69 Aligned_cols=135 Identities=23% Similarity=0.333 Sum_probs=110.2 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC-----------CHHH Q ss_conf 62135798999999999999866421756667899822312578899985158717876315642-----------0110 Q gi|254781011|r 48 CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKK-----------HGQK 116 (228) Q Consensus 48 ~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~-----------hG~~ 116 (228) ..-++.+|..++++...++....+ .++|+|+.+|++|||+|.++|..|++|++++||+.|- .|.. T Consensus 105 msDil~~P~~~~~iG~~fA~~f~~----~~id~VmTveTkGIplA~~vA~~L~VP~Vi~Rk~~kvTeG~tvsinYvSgss 180 (274) T PRK09213 105 LSDLLGNPSILRKIGRIIASAFAD----KKIDAVMTVATKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSS 180 (274) T ss_pred HHHHCCCHHHHHHHHHHHHHHHHH----CCCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCC T ss_conf 026226989999999999987515----5998899983358618999999809989999767887679708999996366 Q ss_pred HHHH------HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHH Q ss_conf 0133------1037334144087887322369999999986598785688887417632489999977980999632999 Q gi|254781011|r 117 SQIE------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWND 190 (228) Q Consensus 117 ~~iE------G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~ 190 (228) +.++ -.+++|+|||||||.+..||++...++++++++++|+|+.+++ +-. ...+++-+ ++.||+++++ T Consensus 181 ~ri~tM~Lskr~L~~gsrVLiIDDFmk~Ggt~~Gm~~L~~Ef~a~vvGigV~i--e~~-~~~~klV~---dY~SL~~l~~ 254 (274) T PRK09213 181 KRIETMSLSKRSLKEGSNVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLV--ENK-EPEERLVD---DYVSLLKLSE 254 (274) T ss_pred CEEEEEEEEHHHCCCCCEEEEECHHHHCCCHHHHHHHHHHHCCCEEEEEEEEE--ECC-CCHHHHHH---HEEEEEEEEE T ss_conf 51899998763369998399983454476088999999997198797899999--548-80330022---1014689740 Q ss_pred HH Q ss_conf 99 Q gi|254781011|r 191 IL 192 (228) Q Consensus 191 il 192 (228) +- T Consensus 255 vd 256 (274) T PRK09213 255 VD 256 (274) T ss_pred CC T ss_conf 15 No 22 >TIGR01744 XPRTase xanthine phosphoribosyltransferase; InterPro: IPR010079 This entry represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; Bacillus subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.; GO: 0016763 transferase activity transferring pentosyl groups, 0043101 purine salvage, 0046110 xanthine metabolic process. Probab=99.72 E-value=7.8e-17 Score=130.65 Aligned_cols=137 Identities=19% Similarity=0.230 Sum_probs=115.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH------- Q ss_conf 6213579899999999999986642175666789982231257889998515871787631564201100133------- Q gi|254781011|r 48 CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE------- 120 (228) Q Consensus 48 ~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iE------- 120 (228) |.++ ||.+++.+++.|+..+.+. .+..|+.+|..||..|-++|..+|+|++|+||+.-.--+.++.+ T Consensus 27 NHQ~--d~~Lm~~vG~~Fa~~Fa~~----g~tKilTIE~SGIAPAiM~a~~l~vP~vFakK~kp~Tl~~~~lta~~~SfT 100 (191) T TIGR01744 27 NHQI--DPKLMREVGEEFARRFADK----GITKILTIEASGIAPAIMTALELGVPVVFAKKKKPLTLTDQLLTASVHSFT 100 (191) T ss_pred HHCC--CHHHHHHHHHHHHHHHHCC----CCCEEEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEEEE T ss_conf 0013--8788999999999851115----897499980158417889878549976999827898765681689999986 Q ss_pred -----------HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHH Q ss_conf -----------103733414408788732236999999998659878568888741763248999997798099963299 Q gi|254781011|r 121 -----------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWN 189 (228) Q Consensus 121 -----------G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~ 189 (228) -.+.+.+|||+|||.+..|++....+.+++++||+++|+-+|+.. .|++|+++|.+.|++++||+.+. T Consensus 101 K~~~~~v~vS~~fL~~~D~vl~IDDFLA~G~a~~gL~~i~~qA~A~~~G~G~viEK-~Fq~Gr~~L~~~g~~v~sLA~i~ 179 (191) T TIGR01744 101 KSKTSTVIVSKEFLSDQDRVLIIDDFLANGDAARGLVDIAEQAGAKIAGIGIVIEK-SFQNGRQELEELGVRVESLAKIR 179 (191) T ss_pred CCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEE-CCCCCHHHHHHCCCCEEEEEEEE T ss_conf 38679999861437899889999513466616788999998619958854479981-45784699984899366237887 Q ss_pred HH Q ss_conf 99 Q gi|254781011|r 190 DI 191 (228) Q Consensus 190 ~i 191 (228) .| T Consensus 180 sL 181 (191) T TIGR01744 180 SL 181 (191) T ss_pred EE T ss_conf 62 No 23 >pfam00156 Pribosyltran Phosphoribosyl transferase domain. This family includes a range of diverse phosphoribosyl transferase enzymes. This family includes: Adenine phosphoribosyltransferase EC:2.4.2.7. Hypoxanthine-guanine-xanthine phosphoribosyltransferase. Hypoxanthine phosphoribosyltransferase EC:2.4.2.8. Ribose-phosphate pyrophosphokinase i EC:2.7.6.1. Amidophosphoribosyltransferase EC:2.4.2.14. Orotate phosphoribosyltransferase EC:2.4.2.10. Uracil phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis, At the very N-terminus of this domain is the ATP-GTP-binding domain. Probab=99.69 E-value=1.9e-16 Score=128.15 Aligned_cols=112 Identities=27% Similarity=0.422 Sum_probs=93.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC------CHHHHH----H Q ss_conf 135798999999999999866421756667899822312578899985158717876315642------011001----3 Q gi|254781011|r 50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKK------HGQKSQ----I 119 (228) Q Consensus 50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~------hG~~~~----i 119 (228) .++.+|+..+.+++.+++.|.+.. .++|.|+|++.||+|+|+.+|..++.|+.+.|+..+. ++.+.. . T Consensus 2 ~ll~~~~~~~~~~~~la~~i~~~~--~~~d~ivgi~~gG~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (123) T pfam00156 2 NLLLDPEELRELIEALAEKIREEG--IDPDVIVGIARGGIPLATALARELGIPLVLVRKRISLPSSIKSRGGESVTLLSR 79 (123) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHC--CCCCEEEECHHCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEECCCCEEEEEC T ss_conf 332699999999999999999868--999999991118698999999986999489998876377660551772699842 Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE Q ss_conf 31037334144087887322369999999986598785688887 Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228) .....+|++|+||||+++||+|+.++++.|+++|+++++++|++ T Consensus 80 ~~~~~~g~~VliVDDv~~tG~Tl~~~~~~l~~~g~~~v~~~vli 123 (123) T pfam00156 80 LPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAGAKVVGVAVLV 123 (123) T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC T ss_conf 43236999999984876843899999999994799099999989 No 24 >KOG1377 consensus Probab=99.67 E-value=4e-17 Score=132.54 Aligned_cols=201 Identities=14% Similarity=0.145 Sum_probs=147.4 Q ss_pred HHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE--EEEECCCHHHH Q ss_conf 9999999865976820789867311872640142621357989999999999998664217566678--99822312578 Q gi|254781011|r 14 ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDI--IAGGETAGIPF 91 (228) Q Consensus 14 ~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~--I~G~a~~Gip~ 91 (228) ..+.+..++..|.+| |||+|+||+|||||+|.+... +++.+..++..++..|.+... .+|+ ++|++|+|+|+ T Consensus 37 d~~~~~~ll~~~~~~---Gpf~l~sk~h~di~~df~~~~-~~k~L~aLA~a~~f~I~edrk--ffDigntvg~qY~gg~~ 110 (261) T KOG1377 37 DLFLERELLQLALRF---GPFILKSKTHSDIFFDFSLFN-SGKDLRALAQAYAFLIFEDRK--FFDIGNTVGLQYKGGPL 110 (261) T ss_pred HHHHHHHHHHHHHHH---CCEEEECCCCCCEEECCCCCC-CHHHHHHHHHHHHHHHHHHHH--CCCCCCEECCCCCCCHH T ss_conf 999999999999964---975863166573012352001-379999999988899885421--03511100310055217 Q ss_pred HHHH-HHHC---CCC-----EEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE Q ss_conf 8999-8515---871-----787631564201100133103733414408788732236999999998659878568888 Q gi|254781011|r 92 ATLL-AERL---NLP-----MIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL 162 (228) Q Consensus 92 a~~i-A~~l---~~p-----~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vi 162 (228) +++. |... ++| ..|.||+.|+||.++.+-+.--+++++|+.+|+.++|..+.+. .+.-..+.|++..+. T Consensus 111 kia~wadl~n~h~v~g~~i~~g~~rk~~k~~~egG~lllAems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~~ 188 (261) T KOG1377 111 KIASWADLVNAHGVPGRGIIKGLNRKLLKDHGEGGVLLLAELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIVA 188 (261) T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHH--HHCHHEEEEEEEEEE T ss_conf 888999888456856603899886500446887725999872467714602488999999984--312110488421440 Q ss_pred EECCC---CH-----HHHHHHH-HCCCEEEEECCHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHH Q ss_conf 74176---32-----4899999-779809996329999999998889998-99999999997299778860 Q gi|254781011|r 163 FFYDI---FP-----EVPARFR-ENNIKLHYLATWNDILTIAEKLKIFNH-DVLEEVRCFLDNPMQWSKKN 223 (228) Q Consensus 163 i~~~~---~~-----~~~~~l~-~~gi~~~sl~t~~~il~~l~~~~~I~~-~~~~~I~~~l~dP~~W~~~~ 223 (228) ++++. .+ .+..++. .++.+.+++.+..+.+-+. .++..++ +.+..++.||+-+|.=-.+| T Consensus 189 ldrq~l~~tpgv~~d~~~d~lgqqy~~p~e~I~~~~~dIiiv-grglt~a~~~~~~~e~YRq~~w~a~~~r 258 (261) T KOG1377 189 LDRQELIMTPGVELDAAGDNLGQQYRLPVEVIVSLGSDIIIV-GRGLTAASKPVQAIERYRQAYWAAYQRR 258 (261) T ss_pred CCHHHHCCCCCCCCCHHHCCHHHHHCCCHHHHEECCCEEEEE-CCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 567762168887633000002213167377520157618997-6864435484799999999999999875 No 25 >PRK06031 phosphoribosyltransferase; Provisional Probab=99.41 E-value=1.3e-12 Score=103.02 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=88.0 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC----CCEEEEECCC--------------CCCHHHHHHHH- Q ss_conf 9999999866421756667899822312578899985158----7178763156--------------42011001331- Q gi|254781011|r 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN----LPMIYVRKKS--------------KKHGQKSQIEG- 121 (228) Q Consensus 61 i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~----~p~~~vRK~~--------------K~hG~~~~iEG- 121 (228) +.+.+++.+.+++.-.++|+|+|.++-|+++|..+|.+|+ +|+-|-||-- ++-|+.-++.- T Consensus 68 V~daLA~~lA~k~~~~~pdvv~GlpTLGl~lA~~Var~LG~~rYVplg~SrKfwy~d~Ls~~vsSITtp~~~krlylDp~ 147 (233) T PRK06031 68 VLDALAEELAAKARPFRPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYDDELSVPLSSITTPDQGKRLYIDPR 147 (233) T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCHHHHHCCCEECCCCCCCCCEEEECHH T ss_conf 99999999998741569867871465540458999997097636765647753313443551000358887731567744 Q ss_pred --CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCC Q ss_conf --0373341440878873223699999999865987856888874176324899999779 Q gi|254781011|r 122 --HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENN 179 (228) Q Consensus 122 --~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~g 179 (228) .+.+|+||++|||||+||.|+..+.++|+.+|++|+++.+.... -+.-++.+...| T Consensus 148 ~lpLl~GrRV~lVDDVISSG~Si~a~l~LL~~~G~e~v~igvaM~Q--~erWre~l~a~g 205 (233) T PRK06031 148 MLPLLRGRRVALIDDVISSGASIVAALRLLATCGIEPAGIGAAMLQ--SERWRESLAALG 205 (233) T ss_pred HHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEEEEHH--HHHHHHHHHHCC T ss_conf 4124328779998212215565999999999759973788763214--456778775127 No 26 >PRK00553 ribose-phosphate pyrophosphokinase; Provisional Probab=99.24 E-value=9.5e-10 Score=84.44 Aligned_cols=151 Identities=20% Similarity=0.321 Sum_probs=100.6 Q ss_pred HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH Q ss_conf 999999999865976820789867311872640142621--357989999999999998664217566678998223125 Q gi|254781011|r 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRK--LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGI 89 (228) Q Consensus 12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~--~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gi 89 (228) -++.+|++|-..|+=++ =-+.|-++..- -|||.-. +-..|. +.+.+.+..+..+ -+|++|..||. T Consensus 122 sak~vA~lL~~~G~drv---itvDlH~~qiq-gfF~iPvd~l~a~~~--------~~~~~~~~~~~~~-~vVVsPD~G~~ 188 (340) T PRK00553 122 TSKLVADLLTKAGVTRV---TLTDIHSDQTQ-GFFDIPVDILRTYHV--------FLSRVLELLGKKD-LVVVSPDYGGV 188 (340) T ss_pred CHHHHHHHHHHCCCCEE---EEECCCHHHHH-HCCCCCCCCCCCCHH--------HHHHHHHHCCCCC-CEEECCCCCHH T ss_conf 39999856763588569---98435658885-216998652106288--------9999998649766-48988996389 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC Q ss_conf 7889998515871787631564201100--13310373341440878873223699999999865987856888874176 Q gi|254781011|r 90 PFATLLAERLNLPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDI 167 (228) Q Consensus 90 p~a~~iA~~l~~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~ 167 (228) ..|..+|..++.|+.++.|+...++... .+.|.+ +|+.|+||||++.||||+.++++.|+++||.-+ .+...++. T Consensus 189 krA~~~A~~L~~~~a~~~K~R~~~~~~e~~~~iGdV-~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V--~a~aTHgv 265 (340) T PRK00553 189 KRARLIAESLELPLAIIDKRRPKHNVAESINVLGEV-KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKV--CVMATHGL 265 (340) T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE--EEEEECCC T ss_conf 999999998299679985345789864113445554-685489525244312569999999998799879--99997951 Q ss_pred CH-HHHHHHHHC Q ss_conf 32-489999977 Q gi|254781011|r 168 FP-EVPARFREN 178 (228) Q Consensus 168 ~~-~~~~~l~~~ 178 (228) |. .+.+++.+. T Consensus 266 fsg~A~eri~~~ 277 (340) T PRK00553 266 FNKNAIQLFDEA 277 (340) T ss_pred CCHHHHHHHHHC T ss_conf 485799999852 No 27 >PRK01259 ribose-phosphate pyrophosphokinase; Provisional Probab=99.17 E-value=9.7e-10 Score=84.38 Aligned_cols=115 Identities=13% Similarity=0.309 Sum_probs=87.9 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHH Q ss_conf 99986642175666789982231257889998515871787631564201100--1331037334144087887322369 Q gi|254781011|r 65 TAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSM 142 (228) Q Consensus 65 ~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~ 142 (228) +++.|.+. ...+ -+|++|..||...|..+|..++.|+.++.|+..+.+... .+.|.+ +|+.|+||||++.||||+ T Consensus 148 l~~~i~~~-~~~~-~vvVsPD~G~~~ra~~~A~~lg~~~~~~~K~R~~~~~~~~~~~iGdV-~Gk~vIIvDDiI~TGgTl 224 (309) T PRK01259 148 LLEDIKKK-NLEN-LVVVSPDVGGVVRARALAKRLDTDLAIIDKRRPRANVSEVMNIIGDV-EGRDCILVDDMIDTGGTL 224 (309) T ss_pred HHHHHHHC-CCCC-CEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC-CCCEEEEECCHHHCCHHH T ss_conf 99999863-8887-38991498689999999997299879999860688833334446775-664399976534345659 Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCHH-HHHHHHHCCCEEEE Q ss_conf 9999999865987856888874176324-89999977980999 Q gi|254781011|r 143 FEFVKVIRDSGGIIQDGIGLFFYDIFPE-VPARFRENNIKLHY 184 (228) Q Consensus 143 ~~~i~~l~~~g~~V~~~~vii~~~~~~~-~~~~l~~~gi~~~s 184 (228) .++++.|+++||.-+ .++..++.|.+ +.+++.+.++.-.- T Consensus 225 ~~aa~~Lk~~GA~~V--~~~~THglfs~~A~~rl~~s~i~~iv 265 (309) T PRK01259 225 CKAAEALKERGAKSV--FAYATHPVLSGGAAERIANSVLDELV 265 (309) T ss_pred HHHHHHHHHCCCCEE--EEEEECHHCCHHHHHHHHHCCCCEEE T ss_conf 999999975699669--99987631394599998708998899 No 28 >PRK02812 ribose-phosphate pyrophosphokinase; Provisional Probab=99.13 E-value=2.1e-09 Score=82.18 Aligned_cols=151 Identities=17% Similarity=0.336 Sum_probs=102.5 Q ss_pred HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEEC--CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH Q ss_conf 999999998659768207898673118726401426--213579899999999999986642175666789982231257 Q gi|254781011|r 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDC--RKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIP 90 (228) Q Consensus 13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~--r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip 90 (228) ++.+|++|-..|+=++- .+-|-+....- |||. ..+...|.. ++.+... ...+ -+|++|..||.. T Consensus 127 aklvA~lL~~aG~d~vi---tvDlH~~qiqg-fF~iPvd~l~a~~~l--------~~yi~~~-~~~~-~vVVsPD~G~~k 192 (331) T PRK02812 127 AKLVANLITKAGVDRVL---AMDLHSAQIQG-YFDIPCDHIYGSPVL--------IDYLASK-NLED-IVVVSPDVGGVA 192 (331) T ss_pred HHHHHHHHHHCCCCEEE---EECCCHHHHHH-CCCCCCCCEECCCHH--------HHHHHHC-CCCC-CEEECCCCCHHH T ss_conf 99999788734887588---73466288863-369974314676067--------9999862-8887-179747940899 Q ss_pred HHHHHHHHC-CCCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC Q ss_conf 889998515-871787631564201100--13310373341440878873223699999999865987856888874176 Q gi|254781011|r 91 FATLLAERL-NLPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDI 167 (228) Q Consensus 91 ~a~~iA~~l-~~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~ 167 (228) -|..+|..+ +.|+.++.|+..+++... .+.|.+ +|+.|+||||++.||+|+.++++.|+++||.-+ .+...++. T Consensus 193 rA~~~A~~L~~~~~a~~~K~R~~~~~~~~~~~vGdV-~Gr~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V--~a~aTHgv 269 (331) T PRK02812 193 RARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDV-KGKTAILVDDMIDTGGTICEGARLLRKEGAKRV--YACATHAV 269 (331) T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCEECCCCCCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE--EEEEECCC T ss_conf 999999972799589994245788842102444554-565189962144227999999999985799878--99998965 Q ss_pred CHH-HHHHHHHCCC Q ss_conf 324-8999997798 Q gi|254781011|r 168 FPE-VPARFRENNI 180 (228) Q Consensus 168 ~~~-~~~~l~~~gi 180 (228) |.+ +.+++.+.++ T Consensus 270 fsg~A~~rl~~s~i 283 (331) T PRK02812 270 FSPPAIERLSASGL 283 (331) T ss_pred CCHHHHHHHHHCCC T ss_conf 58779999972897 No 29 >PRK06827 phosphoribosylpyrophosphate synthetase; Provisional Probab=99.11 E-value=1.8e-09 Score=82.70 Aligned_cols=154 Identities=14% Similarity=0.217 Sum_probs=103.2 Q ss_pred HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECC---CCCCCHHHHHHHHHHHHHHHHH-HCCCCCCCEEEEECCCH Q ss_conf 9999999986597682078986731187264014262---1357989999999999998664-21756667899822312 Q gi|254781011|r 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCR---KLISFVRARSMIMDLTAKTVLR-NIGFESIDIIAGGETAG 88 (228) Q Consensus 13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r---~~~s~P~~~~~i~~~~~~~i~~-~~~~~~~d~I~G~a~~G 88 (228) ++++|++|...|+=++ =.|-|-++..--+| +.. .+...|.. .+.+.+.... ..+. +--+|+.|..|| T Consensus 149 AkLvA~lL~~aGvdrv---iT~DLHa~qIQgfF-~i~pvDnl~~~~~~----~~~l~~~~~~~~~~~-~~~vVVSPD~Gg 219 (381) T PRK06827 149 CALALQELEELGVDHI---LTFDIHDPNIQNAI-PLMSFENLYPSYEI----VKSLLENEKLLELDK-ENLVVISPDTGA 219 (381) T ss_pred HHHHHHHHHHCCCCEE---EEEECCCCCCCCCC-CCCCCCCCCCCHHH----HHHHHHHCCCCCCCC-CCCEEEECCCCC T ss_conf 9999999997199969---99757872247787-78875467753899----999998453123686-777799269973 Q ss_pred HHHHHHHHHHCCCCEEEEECCCC----CCHHHHHH----HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 57889998515871787631564----20110013----31037334144087887322369999999986598785688 Q gi|254781011|r 89 IPFATLLAERLNLPMIYVRKKSK----KHGQKSQI----EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI 160 (228) Q Consensus 89 ip~a~~iA~~l~~p~~~vRK~~K----~hG~~~~i----EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~ 160 (228) ..-|..+|..|+.|+.++-|+.. .+|.+... -|.-.+|+.|+||||.+.||||+..++++|++.||+- ++ T Consensus 220 v~RA~~~A~~L~~~laii~KrR~~s~v~~~~n~i~~~~~lggdV~GK~~IIvDDmIdTggTl~~aA~~Lk~~GA~~--V~ 297 (381) T PRK06827 220 MDRAKYYSSVLKVPLGLFYKRRDYSTVVNGKNPIVVHELLGRDVEGKDVFIVDDMIASGGSVLDAAKELKSRGAKK--II 297 (381) T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCE--EE T ss_conf 8999999997198989999764676445667843675241355679889997243145268999999999879988--99 Q ss_pred EEEECCCCHHHHHHHHH Q ss_conf 88741763248999997 Q gi|254781011|r 161 GLFFYDIFPEVPARFRE 177 (228) Q Consensus 161 vii~~~~~~~~~~~l~~ 177 (228) +...++.|.+|.+++.+ T Consensus 298 a~aTHgvfS~a~e~~~~ 314 (381) T PRK06827 298 CAVSFPFFTEGLEKFDK 314 (381) T ss_pred EEEECHHCCCHHHHHHH T ss_conf 99973660476999976 No 30 >PRK04117 consensus Probab=99.09 E-value=3.3e-09 Score=80.88 Aligned_cols=114 Identities=18% Similarity=0.354 Sum_probs=87.9 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHH Q ss_conf 9998664217566678998223125788999851587178763156420110--01331037334144087887322369 Q gi|254781011|r 65 TAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSM 142 (228) Q Consensus 65 ~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~ 142 (228) +++.+... ...+ .+|++|..||...|..+|..++.|+.+..|+....++. ..+.|.+ +|+.|+||||++.||+|+ T Consensus 151 ~~~~i~~~-~~~~-~vvVsPD~Ga~~ra~~~A~~Lg~~~~~~~K~R~~~~~~~~~~~~gdV-~Gk~vIIVDDiI~TGgTi 227 (309) T PRK04117 151 FRDYIKSK-NLKN-PIIASPDIGGVARARYFAKKLGLDMVIVDKRREKANESEVMNIIGDV-KGKDVILVDDMIDTAGTI 227 (309) T ss_pred HHHHHHHH-CCCC-CEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCEEEEECCHHHHHHHH T ss_conf 78999961-8887-46971593199999999874278879985113788854323445664-898689757256527999 Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCH-HHHHHHHHCCCEEE Q ss_conf 999999986598785688887417632-48999997798099 Q gi|254781011|r 143 FEFVKVIRDSGGIIQDGIGLFFYDIFP-EVPARFRENNIKLH 183 (228) Q Consensus 143 ~~~i~~l~~~g~~V~~~~vii~~~~~~-~~~~~l~~~gi~~~ 183 (228) .++++.|+++||.-+ .+...++.|. .+.+++.+.+++-. T Consensus 228 ~~aa~~L~~~GA~~V--~~~~THglfs~~A~~rl~~s~i~~i 267 (309) T PRK04117 228 VKAAEALKEKGATSV--MACCTHAVLSGPAYERIAKGALDEL 267 (309) T ss_pred HHHHHHHHHCCCCEE--EEEEECCCCCCHHHHHHHHCCCCEE T ss_conf 999999986699748--9999455458369999983899789 No 31 >PRK05259 consensus Probab=99.08 E-value=1.8e-09 Score=82.70 Aligned_cols=115 Identities=18% Similarity=0.356 Sum_probs=87.7 Q ss_pred HHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHH Q ss_conf 9986642175666789982231257889998515871787631564201100--13310373341440878873223699 Q gi|254781011|r 66 AKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMF 143 (228) Q Consensus 66 ~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~ 143 (228) ++.+.++....+ -+|++|-.||...|..+|..++.|+.++.|+....|+.. .+.|.+ +|+.|+||||++.||||+. T Consensus 149 ~~~i~~~~~~~~-~vvVsPD~G~~~ra~~~a~~l~~~~~~~~K~R~~~~~~~~~~~~gdV-~Gk~~IIvDDiIdTGgTl~ 226 (310) T PRK05259 149 ARDIKARYDLGN-VMVVSPDVGGVVRARALAKRLDAPLAIVDKRRERPGESEVMNVIGDV-SGRDCILIDDIVDSGGTLC 226 (310) T ss_pred HHHHHHHCCCCC-EEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCC-CCCEEEEECCHHHCHHHHH T ss_conf 678986389766-39991492699999999998199678999860689954334545662-3124895173441688999 Q ss_pred HHHHHHHHCCCEEEEEEEEEECCCCHH-HHHHHHHCCCEEEE Q ss_conf 999999865987856888874176324-89999977980999 Q gi|254781011|r 144 EFVKVIRDSGGIIQDGIGLFFYDIFPE-VPARFRENNIKLHY 184 (228) Q Consensus 144 ~~i~~l~~~g~~V~~~~vii~~~~~~~-~~~~l~~~gi~~~s 184 (228) ++++.|+++||+-+- +...++.|.+ +.+++.+.+++-.- T Consensus 227 ~aa~~Lk~~GA~~V~--~~~THgvfs~~A~~ri~~s~i~~vv 266 (310) T PRK05259 227 NAAEALLANGANSVT--AYITHGVLSGGAVARIASSKLKELV 266 (310) T ss_pred HHHHHHHHCCCCEEE--EEEECCCCCCHHHHHHHCCCCCEEE T ss_conf 999999877998699--9997853685699998628997899 No 32 >PRK02458 ribose-phosphate pyrophosphokinase; Provisional Probab=99.07 E-value=3.8e-09 Score=80.52 Aligned_cols=101 Identities=21% Similarity=0.348 Sum_probs=80.5 Q ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHH-HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 899822312578899985158717876315642011-0013310373341440878873223699999999865987856 Q gi|254781011|r 80 IIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ-KSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228) Q Consensus 80 ~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~-~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228) +|++|..||...|..+|..++.|+.++.|...+... ...+.|.+ +|+.|+||||++.||||+.++++.|+++||+-+ T Consensus 172 vvVsPD~G~~~ra~~~A~~L~~~~~~i~k~r~~~~~~~~~ivgdV-~Gr~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V- 249 (323) T PRK02458 172 VVVSPKNSGIKRARSLAEYLDSPIAIIDYAQDDSEREEGYIIGDV-SGKKAILIDDILNTGKTFAEAAKILERSGATEI- 249 (323) T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEECCCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEE- T ss_conf 897578305688999998605871379862168974122313666-896678762023224889999999996499768- Q ss_pred EEEEEECCCCHH-HHHHHHHCCCEEE Q ss_conf 888874176324-8999997798099 Q gi|254781011|r 159 GIGLFFYDIFPE-VPARFRENNIKLH 183 (228) Q Consensus 159 ~~vii~~~~~~~-~~~~l~~~gi~~~ 183 (228) .++..++.|.+ +.+++.+.++.-. T Consensus 250 -~~~~THglfs~~A~~rl~~s~i~~i 274 (323) T PRK02458 250 -YAVASHGLFAGGAAEVLETAPIKEI 274 (323) T ss_pred -EEEEECCCCCHHHHHHHHCCCCCEE T ss_conf -9999764257079999864998689 No 33 >PRK01999 consensus Probab=99.07 E-value=1.9e-09 Score=82.48 Aligned_cols=102 Identities=18% Similarity=0.307 Sum_probs=82.9 Q ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 78998223125788999851587178763156420110--0133103733414408788732236999999998659878 Q gi|254781011|r 79 DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 (228) Q Consensus 79 d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V 156 (228) -+|++|..||...|..+|..++.|+.+..|+..+..+- ..+.|.+ +|+.|+||||++.||||+.++++.|+++||.- T Consensus 164 ~vvVsPD~g~~kra~~~A~~Lg~~~~~~~K~R~~~~~v~~~~~~gdV-~Gk~~IIVDDiIdTGgTl~~aa~~L~~~GA~~ 242 (311) T PRK01999 164 LVIATPDVGGSKRASAYSKYLGVPVVICYKSREKANEIASMQIIGDV-KGKNVILVDDMVDTAGTITKAADLMMEKGAKS 242 (311) T ss_pred EEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEECCCCCCC-CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCE T ss_conf 08981590499999999986178723311024678841131334354-79669997544443478999999998559973 Q ss_pred EEEEEEEECCCCHH-HHHHHHHCCCEEE Q ss_conf 56888874176324-8999997798099 Q gi|254781011|r 157 QDGIGLFFYDIFPE-VPARFRENNIKLH 183 (228) Q Consensus 157 ~~~~vii~~~~~~~-~~~~l~~~gi~~~ 183 (228) +. ++..++.|.+ +.+++.+.++.-. T Consensus 243 V~--~~~THglfs~~A~~rl~~s~i~~i 268 (311) T PRK01999 243 VR--AIASHAVMSGPASERVENSKLTEM 268 (311) T ss_pred EE--EEEECCCCCCHHHHHHHHCCCCEE T ss_conf 89--999455458559999974899889 No 34 >PRK02039 consensus Probab=99.07 E-value=3.3e-09 Score=80.94 Aligned_cols=105 Identities=15% Similarity=0.298 Sum_probs=83.8 Q ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 78998223125788999851587178763156420110--0133103733414408788732236999999998659878 Q gi|254781011|r 79 DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 (228) Q Consensus 79 d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V 156 (228) -+|++|..||...|..+|..++.|+.++.|+..+.... ..+.|.+ +|+.|+||||++.||||+.++++.|+++||.= T Consensus 166 ~vvVsPD~G~~~ra~~~a~~L~~~~~~~~K~R~~~~~~e~~~~igdV-~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~ 244 (316) T PRK02039 166 LLVVSPDVGGVVRARALAKQLNCDLAIIDKRRPKANVAEVMNIIGEV-EGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQ 244 (316) T ss_pred CEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCC-CCCEEEEECCHHHCHHHHHHHHHHHHHCCCCE T ss_conf 38984694088999999998299979998415888703630246653-89726711725545688999999999769985 Q ss_pred EEEEEEEECCCCHH-HHHHHHHCCCEEEEEC Q ss_conf 56888874176324-8999997798099963 Q gi|254781011|r 157 QDGIGLFFYDIFPE-VPARFRENNIKLHYLA 186 (228) Q Consensus 157 ~~~~vii~~~~~~~-~~~~l~~~gi~~~sl~ 186 (228) + .++..++.|.+ +.+++.+.++.-.-++ T Consensus 245 V--~~~~THgvfs~~A~~rl~~s~i~~vvvT 273 (316) T PRK02039 245 V--FAYATHPVLSGGAAERIAASALDELVVT 273 (316) T ss_pred E--EEEEECCCCCCHHHHHHHCCCCCEEEEE T ss_conf 7--9999784257349999860899789993 No 35 >PRK01506 consensus Probab=99.07 E-value=2.8e-09 Score=81.40 Aligned_cols=105 Identities=16% Similarity=0.306 Sum_probs=84.1 Q ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 78998223125788999851587178763156420110--0133103733414408788732236999999998659878 Q gi|254781011|r 79 DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 (228) Q Consensus 79 d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V 156 (228) -+|++|..||...|..+|..++.|+.++.|+....+.. ..+.|.+ +|+.|+||||++.||+|+.++++.|+++||.- T Consensus 169 ~vVVsPD~Ga~kra~~~a~~L~~~~~~~~K~R~~~~~v~~~~~~gdV-~Gr~vIIVDDiI~TGgTl~~aa~~Lk~~GA~~ 247 (317) T PRK01506 169 IVIVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIIGNI-EGKTAILIDDIIDTAGTITLAANALVENGASE 247 (317) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCC-CCCEEEEECCHHHCCCHHHHHHHHHHHCCCCE T ss_conf 48990492489999999997299668898641799804630245655-79627875132213505999999998659975 Q ss_pred EEEEEEEECCCCHH-HHHHHHHCCCEEEEEC Q ss_conf 56888874176324-8999997798099963 Q gi|254781011|r 157 QDGIGLFFYDIFPE-VPARFRENNIKLHYLA 186 (228) Q Consensus 157 ~~~~vii~~~~~~~-~~~~l~~~gi~~~sl~ 186 (228) + .+...++.|.+ +.+++.+.++.-.-.+ T Consensus 248 V--~~~~THglfs~~A~~rl~~s~i~~iv~T 276 (317) T PRK01506 248 V--YACCTHPVLSGPAIERIQNSKIKELVVT 276 (317) T ss_pred E--EEEEECCCCCCHHHHHHHCCCCCEEEEE T ss_conf 8--9999770068179999861899889993 No 36 >COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism] Probab=99.07 E-value=3.7e-09 Score=80.62 Aligned_cols=150 Identities=21% Similarity=0.368 Sum_probs=101.1 Q ss_pred HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCE---EEECC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC Q ss_conf 999999999865976820789867311872640---14262--1357989999999999998664217566678998223 Q gi|254781011|r 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPL---YIDCR--KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGET 86 (228) Q Consensus 12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~---Y~d~r--~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~ 86 (228) -++++|++|-..|+=+. ++=-.|+|. |||.- .+...| .+++.+.++..+.+ -+|++|.. T Consensus 109 saklvA~lL~~aG~drv-------~TvDlH~~qiqgfFdipvdnl~a~p--------~l~~~~~~~~~~~d-~vVVSPD~ 172 (314) T COG0462 109 SAKLVANLLETAGADRV-------LTVDLHAPQIQGFFDIPVDNLYAAP--------LLAEYIREKYDLDD-PVVVSPDK 172 (314) T ss_pred EHHHHHHHHHHCCCCEE-------EEEECCCHHHCCCCCCCCCCCCCHH--------HHHHHHHHHCCCCC-CEEECCCC T ss_conf 29999999997299869-------9970786565566788403640459--------99999997367778-68988884 Q ss_pred CHHHHHHHHHHHCCCCEEEEECCCC-CCH--HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE Q ss_conf 1257889998515871787631564-201--1001331037334144087887322369999999986598785688887 Q gi|254781011|r 87 AGIPFATLLAERLNLPMIYVRKKSK-KHG--QKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 87 ~Gip~a~~iA~~l~~p~~~vRK~~K-~hG--~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228) ||+.-|..+|..++.|+.++.|+.- ... +...+.|.+ +|++|+||||.+.||||+.+++++|++.||+-+-+ .. T Consensus 173 Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~~~~~~gdV-~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a--~~ 249 (314) T COG0462 173 GGVKRARALADRLGAPLAIIDKRRDSSPNVVEVMNLIGDV-EGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYA--AA 249 (314) T ss_pred CHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCC-CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEE--EE T ss_conf 3799999999980998799998725899747970343367-79879999365136568999999999779975999--99 Q ss_pred ECCCCHH-HHHHHHHCCC Q ss_conf 4176324-8999997798 Q gi|254781011|r 164 FYDIFPE-VPARFRENNI 180 (228) Q Consensus 164 ~~~~~~~-~~~~l~~~gi 180 (228) .+..|.+ +.+++++..+ T Consensus 250 tH~vfs~~a~~~l~~~~i 267 (314) T COG0462 250 THGVFSGAALERLEASAI 267 (314) T ss_pred ECHHHCHHHHHHHHCCCC T ss_conf 836607089999864887 No 37 >PRK04554 consensus Probab=99.06 E-value=3.1e-09 Score=81.06 Aligned_cols=154 Identities=18% Similarity=0.305 Sum_probs=101.3 Q ss_pred HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH Q ss_conf 9999999986597682078986731187264014262--13579899999999999986642175666789982231257 Q gi|254781011|r 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCR--KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIP 90 (228) Q Consensus 13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r--~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip 90 (228) ++.+|++|...|+=++ =.+-|-+....- |||.. .+... ..+++.+... ...+ -+|++|..||.. T Consensus 113 ak~vA~lL~~~G~d~v---itvDlH~~qiqg-fF~ipvd~l~a~--------~~l~~~i~~~-~~~~-~vvVsPD~G~~~ 178 (327) T PRK04554 113 AKLVANMLYSAGIDRV---LTVDLHADQIQG-FFDIPVDNIYAT--------PILLNDIKQQ-RIEN-LTVVSPDIGGVV 178 (327) T ss_pred HHHHHHHHHHCCCCCC---EEECCCHHHHHC-CCCCCCCCCCCH--------HHHHHHHHHC-CCCC-CEEECCCCCHHH T ss_conf 9999855762598850---476268488734-368970211121--------9999999860-7787-289837953899 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC Q ss_conf 88999851587178763156420110--0133103733414408788732236999999998659878568888741763 Q gi|254781011|r 91 FATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIF 168 (228) Q Consensus 91 ~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~ 168 (228) .|..+|..++.|+.+..|...+.... ..+.|.+ +|+.|+||||++.||||+.++++.|+++||.-+ .+...++.| T Consensus 179 ra~~~A~~L~~~~a~~~K~R~~~~~~~~~~~vgdV-~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V--~~~aTHglf 255 (327) T PRK04554 179 RARAVAKSLNADLAIIDKRRPKANVAEVMNIIGDI-QGRTCLIVDDMIDTANTLCKAAVALKERGAERV--LAYASHAVF 255 (327) T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCC-CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEE--EEEEECCCC T ss_conf 99999975688779999644899822651255641-222367204321350679999999997699878--999879160 Q ss_pred H-HHHHHHHHCCCEEE Q ss_conf 2-48999997798099 Q gi|254781011|r 169 P-EVPARFRENNIKLH 183 (228) Q Consensus 169 ~-~~~~~l~~~gi~~~ 183 (228) . .+.+++.+.+++-. T Consensus 256 s~~A~~rl~~s~i~~i 271 (327) T PRK04554 256 SGEAVSRIASSEIDQV 271 (327) T ss_pred CCHHHHHHHHCCCCEE T ss_conf 6339999971899789 No 38 >PRK02269 ribose-phosphate pyrophosphokinase; Provisional Probab=99.05 E-value=3.5e-09 Score=80.78 Aligned_cols=161 Identities=15% Similarity=0.189 Sum_probs=101.7 Q ss_pred HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH Q ss_conf 99999999865976820789867311872640142621357989999999999998664217566678998223125788 Q gi|254781011|r 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFA 92 (228) Q Consensus 13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a 92 (228) ++.+|++|-..|+=++- -+-|-+.... -||+......+ . ...+++.|.+.....+--+|++|..||.--| T Consensus 111 ak~vA~lL~~~g~d~vi---tvDlH~~~i~-gfF~ipv~~l~--~----~~~~~~~i~~~~~~~~~~vvVsPD~G~~~ra 180 (321) T PRK02269 111 SKLVANMLEVAGVDRLL---TVDLHAAQIQ-GFFDIPVDHLM--G----APLIADYFDRHGLVGEDVVVVSPDHGGVTRA 180 (321) T ss_pred HHHHHHHHHHCCCCEEE---EECCCCHHHH-HCCCCCCCCEE--E----CHHHHHHHHHHCCCCCCEEEECCCCHHHHHH T ss_conf 99999988744877799---9626747776-32699841113--0----3899999998479876708971793199999 Q ss_pred HHHHHHCCCCEEEEECCCCCCHH--H--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC Q ss_conf 99985158717876315642011--0--0133103733414408788732236999999998659878568888741763 Q gi|254781011|r 93 TLLAERLNLPMIYVRKKSKKHGQ--K--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIF 168 (228) Q Consensus 93 ~~iA~~l~~p~~~vRK~~K~hG~--~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~ 168 (228) ..+|..++.|+.+..|....... . ..+.|.+ +|+.|+||||++.||||+.++++.|+++||.-+- ++..++.| T Consensus 181 ~~~A~~l~~~~~~~~K~R~~~~~~~~~~~~~~gdV-~Gk~vIIVDDiIdTGgTl~~aa~~Lk~~GA~~V~--~~~THgvf 257 (321) T PRK02269 181 RKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGNV-SGKKCILIDDMIDTAGTICHAADALAEAGATAVY--ASCTHPVL 257 (321) T ss_pred HHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCCC-CCCEEEEECCHHHCHHHHHHHHHHHHHCCCCEEE--EEEECCCC T ss_conf 99998627878999987368988743420357740-6976999662431426699999999848998279--99978027 Q ss_pred H-HHHHHHHHCCCEEEEEC Q ss_conf 2-48999997798099963 Q gi|254781011|r 169 P-EVPARFRENNIKLHYLA 186 (228) Q Consensus 169 ~-~~~~~l~~~gi~~~sl~ 186 (228) . ++.+++.+.+++-.-++ T Consensus 258 s~~A~~rl~~s~i~~ivvT 276 (321) T PRK02269 258 SGPALDNIQKSAIEKLIVL 276 (321) T ss_pred CHHHHHHHHCCCCCEEEEE T ss_conf 8479999860899889980 No 39 >PRK04923 ribose-phosphate pyrophosphokinase; Provisional Probab=98.99 E-value=6e-09 Score=79.21 Aligned_cols=102 Identities=14% Similarity=0.310 Sum_probs=81.7 Q ss_pred CEEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE Q ss_conf 7899822312578899985158-71787631564201100--13310373341440878873223699999999865987 Q gi|254781011|r 79 DIIAGGETAGIPFATLLAERLN-LPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 (228) Q Consensus 79 d~I~G~a~~Gip~a~~iA~~l~-~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~ 155 (228) -+|++|..||...|..+|..++ .++.+..|...+.+... .+.|.+ +|+.|+||||++.||||+.++++.|+++||. T Consensus 168 ~vvVsPD~G~~~ra~~~A~~Lg~~~~~~~~K~R~~~~~~~~~~~~gdV-~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~ 246 (319) T PRK04923 168 LIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDV-QGKTCVLVDDLVDTAGTLCAAAAALKQRGAL 246 (319) T ss_pred CEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCCCC-CCCEEEEECCHHCCCHHHHHHHHHHHHCCCC T ss_conf 189847942889999999870898679998544899821102444443-7966999664320651299999999875998 Q ss_pred EEEEEEEEECCCCH-HHHHHHHHCCCEEE Q ss_conf 85688887417632-48999997798099 Q gi|254781011|r 156 IQDGIGLFFYDIFP-EVPARFRENNIKLH 183 (228) Q Consensus 156 V~~~~vii~~~~~~-~~~~~l~~~gi~~~ 183 (228) -+ .+...+..|. .+.+++.+.++.-. T Consensus 247 ~V--~~~~THglfs~~A~~rl~~s~i~~i 273 (319) T PRK04923 247 KV--VAYITHPVLSGPAVDNINNSQLDEL 273 (319) T ss_pred EE--EEEEECCCCCHHHHHHHHHCCCCEE T ss_conf 68--9999797688679999970899889 No 40 >PRK05038 consensus Probab=98.99 E-value=9.3e-09 Score=77.99 Aligned_cols=104 Identities=16% Similarity=0.324 Sum_probs=81.3 Q ss_pred CEEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE Q ss_conf 7899822312578899985158-7178763156420110--013310373341440878873223699999999865987 Q gi|254781011|r 79 DIIAGGETAGIPFATLLAERLN-LPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 (228) Q Consensus 79 d~I~G~a~~Gip~a~~iA~~l~-~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~ 155 (228) .+|++|..||..-|..+|..++ .++.++.|+..+.+.. ..+.|.+ +|+.|+||||++.||||+.++++.|+++||. T Consensus 164 ~vVVsPD~g~~~ra~~~A~~l~~~~~~~~~K~R~~~~~~~~~~~~gdV-~Gk~~iIVDDiIdTGgTl~~aa~~Lk~~GA~ 242 (315) T PRK05038 164 PIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDV-AGRDCILVDDMIDTGGTLCKAAEALKERGAK 242 (315) T ss_pred CEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHCCCC T ss_conf 579815914999999999870898779998503788731440345643-4413799757222515899999999965998 Q ss_pred EEEEEEEEECCCCHH-HHHHHHHCCCEEEEE Q ss_conf 856888874176324-899999779809996 Q gi|254781011|r 156 IQDGIGLFFYDIFPE-VPARFRENNIKLHYL 185 (228) Q Consensus 156 V~~~~vii~~~~~~~-~~~~l~~~gi~~~sl 185 (228) -+ +++..++.|.+ +.+++.+.+++-.-. T Consensus 243 ~V--~~~~THglfs~~A~~~l~~s~i~~ivv 271 (315) T PRK05038 243 RV--FAYATHPVFSGNAAENIRNSVIDEVIV 271 (315) T ss_pred CC--EEEEECCCCCCHHHHHHHCCCCCEEEE T ss_conf 63--599865355836999986089988999 No 41 >PRK03092 ribose-phosphate pyrophosphokinase; Provisional Probab=98.98 E-value=8.4e-09 Score=78.27 Aligned_cols=116 Identities=15% Similarity=0.309 Sum_probs=86.4 Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCC-CH---HHHHHHHCCCCCCCEEEHHHHHHH Q ss_conf 9999866421756667899822312578899985158-717876315642-01---100133103733414408788732 Q gi|254781011|r 64 LTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN-LPMIYVRKKSKK-HG---QKSQIEGHLFKGARVLVIEDLVTL 138 (228) Q Consensus 64 ~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~-~p~~~vRK~~K~-hG---~~~~iEG~~~~g~~vliVDDviTt 138 (228) .+++.+.++....+ -+|++|..||...|..+|..++ .|+.++.|+... .+ ....+.|. .+|+.|+||||++.| T Consensus 136 ~l~~~i~~~~~~~~-~vvvsPD~Ga~~ra~~~a~~Lg~~~~~~~~K~R~~~~~~~v~~~~~~gd-V~Gr~viIVDDiI~T 213 (304) T PRK03092 136 LLADYIRSNYDLDN-MTVVSPDAGRVRVAEKWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGD-VEGRTCVLVDDMIDT 213 (304) T ss_pred HHHHHHHHCCCCCC-CEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCCC-CCCCEEEEECCHHHC T ss_conf 99999985188766-1898069746899999999867997899970246787753761444567-678759997764543 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCCHH-HHHHHHHCCCEEE Q ss_conf 23699999999865987856888874176324-8999997798099 Q gi|254781011|r 139 GNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE-VPARFRENNIKLH 183 (228) Q Consensus 139 G~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~-~~~~l~~~gi~~~ 183 (228) |||+.++++.|+++||.-+ .++..++.|.+ +.+++.+.+++-. T Consensus 214 GgTl~~aa~~Lk~~GA~~V--~~~~THglfs~~A~~rl~~s~i~~i 257 (304) T PRK03092 214 GGTIAGAVEALKEAGAKDV--IIAATHGVLSDPAAERLKNCGAREV 257 (304) T ss_pred CHHHHHHHHHHHHCCCCEE--EEEEECCCCCHHHHHHHHHCCCCEE T ss_conf 7359999999986699839--9999793459679999973899879 No 42 >PRK00934 ribose-phosphate pyrophosphokinase; Provisional Probab=98.98 E-value=8.3e-09 Score=78.31 Aligned_cols=113 Identities=15% Similarity=0.232 Sum_probs=86.7 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHH--HHHHHHCCCCCCCEEEHHHHHHHHHHH Q ss_conf 999866421756667899822312578899985158717876315642011--001331037334144087887322369 Q gi|254781011|r 65 TAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ--KSQIEGHLFKGARVLVIEDLVTLGNSM 142 (228) Q Consensus 65 ~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~--~~~iEG~~~~g~~vliVDDviTtG~S~ 142 (228) +++.+..+. .+ .+|++|..||...|..+|..++.|+.+..|+.-.... .....|. .+|+.|+||||++.||||+ T Consensus 145 ~~~~~~~~~--~~-~vVVsPD~G~~~ra~~~a~~Lg~~~~~~~K~R~~~~~v~~~~~~~d-V~Gr~~IIvDDiidTGgTl 220 (286) T PRK00934 145 IAEYIKEKL--VD-PLVLAPDKGALERAKEVAEILGCEYDYLEKKRISPTEVEMKPKDLD-VKGKDVLIVDDIISTGGTM 220 (286) T ss_pred HHHHHHHHC--CC-CEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEECCCCC-CCCCEEEEECCHHHCHHHH T ss_conf 589998438--88-7898479748999999999753646589974389985236235322-2587899965622153889 Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCHH-HHHHHHHCCCEEE Q ss_conf 9999999865987856888874176324-8999997798099 Q gi|254781011|r 143 FEFVKVIRDSGGIIQDGIGLFFYDIFPE-VPARFRENNIKLH 183 (228) Q Consensus 143 ~~~i~~l~~~g~~V~~~~vii~~~~~~~-~~~~l~~~gi~~~ 183 (228) .++++.|++.||.=+ .++..++.|.+ +.+++.+.++.-. T Consensus 221 ~~aa~~Lk~~GA~~V--~~~~THglfs~~A~~rl~~s~i~~i 260 (286) T PRK00934 221 AKAISILKEQGAKKI--YVSCVHPVLVEDAINKIHSAGADEL 260 (286) T ss_pred HHHHHHHHHCCCCEE--EEEEECCCCCHHHHHHHHHCCCCEE T ss_conf 999999998699869--9999790078059999974899889 No 43 >PRK07199 phosphoribosylpyrophosphate synthetase; Provisional Probab=98.98 E-value=9.4e-09 Score=77.96 Aligned_cols=102 Identities=13% Similarity=0.229 Sum_probs=80.9 Q ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH---HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE Q ss_conf 7899822312578899985158717876315642011001---3310373341440878873223699999999865987 Q gi|254781011|r 79 DIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQ---IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 (228) Q Consensus 79 d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~---iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~ 155 (228) .+|++|..||...+..+|..++.|+.+.+|+..+...-.. ..|. .+|+.|+||||++.||||+.++++.|++.||. T Consensus 162 ~vvVsPD~G~~~ra~~~a~~lg~~~~~~~K~R~~~~~v~i~~~~~~~-v~gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~ 240 (301) T PRK07199 162 PLLIGPDSESEQWVSAVAGRAGAPHAVLRKTRHGDRDVEISLPDLSA-WAGRTPVLVDDIVSTGRTLIEAARQLLAAGAA 240 (301) T ss_pred CEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEECCCCCC-CCCCCEEEECCHHHCHHHHHHHHHHHHHCCCC T ss_conf 53678887779999999986599879999886589863374465545-58995478664221437799999999986998 Q ss_pred EEEEEEEEECCCCHH-HHHHHHHCCCEEE Q ss_conf 856888874176324-8999997798099 Q gi|254781011|r 156 IQDGIGLFFYDIFPE-VPARFRENNIKLH 183 (228) Q Consensus 156 V~~~~vii~~~~~~~-~~~~l~~~gi~~~ 183 (228) -+ .+...++.|.+ +.+++.+.++.-. T Consensus 241 ~V--~~~aTHgvfs~~A~~~i~~s~i~~i 267 (301) T PRK07199 241 SP--VCVGVHALFAPDAYSALLAAGAARV 267 (301) T ss_pred EE--EEEEECCCCCHHHHHHHHHCCCCEE T ss_conf 58--9999786478569999984899889 No 44 >PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional Probab=98.97 E-value=1.4e-08 Score=76.90 Aligned_cols=156 Identities=15% Similarity=0.244 Sum_probs=105.3 Q ss_pred HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEE---EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH Q ss_conf 9999999998659768207898673118726401---4262135798999999999999866421756667899822312 Q gi|254781011|r 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLY---IDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAG 88 (228) Q Consensus 12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y---~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~G 88 (228) -++++|.+|-..||=++ =..-|-++..--+| +..-.+.+.|-. ++.+.+. +..+ .+|+.|..|| T Consensus 228 SAKlVAnLL~~aGaDRV---ITmDLHa~QIQGFFd~nIPVDnL~a~pll--------~~y~~~~-~l~n-~VVVSPD~Gg 294 (443) T PTZ00145 228 SAADVARMIEAMGVDRV---VAIDLHSGQIQGFFGPRVPVDNLEAQLIG--------LDYFTKK-DLYK-PVIVSPDAGG 294 (443) T ss_pred EHHHHHHHHHHCCCCEE---EEEECCCHHHCCCCCCCCCCCCCCCCHHH--------HHHHHHC-CCCC-CEEECCCCCH T ss_conf 59999999986398849---99706856762425899862136524767--------9999845-9988-8898389974 Q ss_pred HHHHHHHHHHCC------CCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 578899985158------71787631564201100--1331037334144087887322369999999986598785688 Q gi|254781011|r 89 IPFATLLAERLN------LPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI 160 (228) Q Consensus 89 ip~a~~iA~~l~------~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~ 160 (228) +--|..+|..|+ .++.++-|.....++.. .+.|.+ +|+.|+||||++.||||+..++++|++.||.-+ . T Consensus 295 vkRAr~~A~~L~~~~i~d~~lAii~KrR~~~neve~m~iIGDV-kGK~~IIVDDmIDTgGTL~~AA~~Lke~GAk~V--y 371 (443) T PTZ00145 295 VYRARKFQDGLNHRGIGDCGIAMLIKQRTKPNEIEKMDLVGNV-YDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRV--F 371 (443) T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECC-CCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEE--E T ss_conf 9999999998554556788659999655999936653557502-798789967743455679999999996799879--9 Q ss_pred EEEECCCCHH-HHHHHHHCCCEEE Q ss_conf 8874176324-8999997798099 Q gi|254781011|r 161 GLFFYDIFPE-VPARFRENNIKLH 183 (228) Q Consensus 161 vii~~~~~~~-~~~~l~~~gi~~~ 183 (228) +...++.|.+ |.+++++..++-. T Consensus 372 A~aTHGVfSg~AierI~~S~I~ev 395 (443) T PTZ00145 372 AFATHGLFSGPAIDRIEKSPLEEV 395 (443) T ss_pred EEEECCCCCHHHHHHHHCCCCCEE T ss_conf 999773078548989754899789 No 45 >PRK01132 consensus Probab=98.95 E-value=6.9e-09 Score=78.84 Aligned_cols=109 Identities=17% Similarity=0.319 Sum_probs=83.9 Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCH--HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 66789982231257889998515871787631564201--1001331037334144087887322369999999986598 Q gi|254781011|r 77 SIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHG--QKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154 (228) Q Consensus 77 ~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG--~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~ 154 (228) +.++|++|..||...|..+|..++.++.+..|+.-+.. .....+|.+ +|+.|+||||.+.||||+.++++.|+++|| T Consensus 153 ~~~vVVsPD~G~~~rA~~~A~~Lg~~~~~~~K~R~~~~~v~~~~~~~dV-~gk~~IIVDDiidTGgTl~~aa~~Lk~~GA 231 (286) T PRK01132 153 DIDYVVSPDDGGLERVKSIAKYLGKKAFYIEKKRIDDRTVEMKMPDIDS-NGKKILIVDDIISTGGTIAKSSRILRDKGA 231 (286) T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEECCCCCE-EEEEEEEEECHHHCHHHHHHHHHHHHHCCC T ss_conf 8561257985288999999998199869997555699851351211214-641599981502123899999999998799 Q ss_pred EEEEEEEEEECCCCHH-HHHHHHHCCCEEEEECCHHHH Q ss_conf 7856888874176324-899999779809996329999 Q gi|254781011|r 155 IIQDGIGLFFYDIFPE-VPARFRENNIKLHYLATWNDI 191 (228) Q Consensus 155 ~V~~~~vii~~~~~~~-~~~~l~~~gi~~~sl~t~~~i 191 (228) +=+ .++..++.|.+ +.+++.+ ++. .+..-+.| T Consensus 232 ~~V--~a~~THglfs~~A~~ri~~-~~~--~iv~TdTi 264 (286) T PRK01132 232 SKI--YVSAVHGLFVNNSEAKILE-NAD--EIHVTDTV 264 (286) T ss_pred CEE--EEEEECCCCCHHHHHHHHH-CCC--EEEECCCC T ss_conf 849--9999682067169999880-699--89991897 No 46 >PRK03675 consensus Probab=98.92 E-value=2e-08 Score=75.89 Aligned_cols=110 Identities=17% Similarity=0.312 Sum_probs=83.8 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHH--HHHHHHCCCCCCCEEEHHHHHHHHHHH Q ss_conf 999866421756667899822312578899985158717876315642011--001331037334144087887322369 Q gi|254781011|r 65 TAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ--KSQIEGHLFKGARVLVIEDLVTLGNSM 142 (228) Q Consensus 65 ~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~--~~~iEG~~~~g~~vliVDDviTtG~S~ 142 (228) +++.+..+.. + .+|++|..|+...|..+|..++.++.+..|+..++.+ ...+.|.+ +|+.|+||||++.||+|+ T Consensus 142 ~~~~~~~~~~--~-~vVVsPD~G~~~ra~~~A~~lg~~~~~~~K~R~~~~~v~~~~~~~dV-~Gk~vIIVDDiIdTGgTl 217 (279) T PRK03675 142 IAEYFRDKLG--E-GLVLAPDKGALERAKAVAEVLGLEYSHFEKERISPTEVEMTPVDVDV-KGKNVLIVDDIISTGGTM 217 (279) T ss_pred HHHHHHHHCC--C-CEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCC-CCCEEEEECCCCCCHHHH T ss_conf 8999985089--8-68997898889999999986178657887326789821652555554-796799974510252789 Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCH-HHHHHHHHCCCE Q ss_conf 999999986598785688887417632-489999977980 Q gi|254781011|r 143 FEFVKVIRDSGGIIQDGIGLFFYDIFP-EVPARFRENNIK 181 (228) Q Consensus 143 ~~~i~~l~~~g~~V~~~~vii~~~~~~-~~~~~l~~~gi~ 181 (228) .++++.|++.||.-+ .+...++.|. ++.+++.+. +. T Consensus 218 ~~aa~~Lk~~GA~~V--~~~aTHglfs~~A~~~l~~~-i~ 254 (279) T PRK03675 218 IRAAEILRKLGAKKI--FVVATHGVFAEGAIERVSKA-VD 254 (279) T ss_pred HHHHHHHHHCCCCEE--EEEEECCCCCCHHHHHHHHH-CC T ss_conf 999999997699869--99997810680699999974-88 No 47 >PRK02270 consensus Probab=98.89 E-value=7.9e-08 Score=71.92 Aligned_cols=150 Identities=18% Similarity=0.267 Sum_probs=96.1 Q ss_pred HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH Q ss_conf 99999999865976820789867311872640142621--3579899999999999986642175666789982231257 Q gi|254781011|r 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRK--LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIP 90 (228) Q Consensus 13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~--~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip 90 (228) ++.+|++|-..|+=+.- -+-|-|.... -|||.-. +...| .+++.+.... .+ -+|++|..||.. T Consensus 111 aklvA~lL~~~G~d~vi---tvDlH~~qiq-gfF~iPvd~l~a~~--------~l~~~i~~~~--~~-~vvVsPD~G~~~ 175 (327) T PRK02270 111 AKLVADLLEKAGATKII---SVDLHNPSIQ-GFFDIPVDDIKGQY--------ILAKELKKKN--EK-FTVVSPDHGGAV 175 (327) T ss_pred HHHHHHHHHHCCCCEEE---EECCCHHHHH-CCCCCCCEEEECCH--------HHHHHHHHCC--CC-EEEEECCCCHHH T ss_conf 99999988524786478---8435768885-04699730477427--------8799886406--87-189976974899 Q ss_pred HHHHHHHHCC--CCEEEEECCCCCCHHHHH--HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC Q ss_conf 8899985158--717876315642011001--331037334144087887322369999999986598785688887417 Q gi|254781011|r 91 FATLLAERLN--LPMIYVRKKSKKHGQKSQ--IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD 166 (228) Q Consensus 91 ~a~~iA~~l~--~p~~~vRK~~K~hG~~~~--iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~ 166 (228) -|..+|..++ .++.++.|...+.++... +.|.+ +|+.|+||||++.||||+.++++.|++.||+-+ .+...++ T Consensus 176 ra~~~a~~Lg~~~~~a~~~K~R~~~~~~e~~~~iGdV-~Gk~~IIVDDiIdTGgTl~~aa~~Lk~~GA~~V--~~~aTHg 252 (327) T PRK02270 176 RARILAEIISDQIKIAIIDKRRTGANKSEVLGLIGDV-DGKNAVIIDDIIDTGGTIINAAEVLKEKGAKKI--VLAATHG 252 (327) T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCE-EEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEE--EEEEECH T ss_conf 9999999853897488850246787742352045631-201489976700054779999999998799879--9999774 Q ss_pred CCHHHHH-HHHHCCC Q ss_conf 6324899-9997798 Q gi|254781011|r 167 IFPEVPA-RFRENNI 180 (228) Q Consensus 167 ~~~~~~~-~l~~~gi 180 (228) .|.++.. ++.+.++ T Consensus 253 vfs~~a~~~~~~s~i 267 (327) T PRK02270 253 LFSKGFEIFEENPNI 267 (327) T ss_pred HCCCHHHHHHHCCCC T ss_conf 438049999658998 No 48 >PRK11595 gluconate periplasmic binding protein; Provisional Probab=98.88 E-value=1.7e-08 Score=76.24 Aligned_cols=111 Identities=19% Similarity=0.259 Sum_probs=72.8 Q ss_pred CCHHHHHHHHHHHHHHHHHH---CCCCCCCEEEEECCC-------HH----HHHHHHHHHCCCCE---EEEECCCC--CC Q ss_conf 79899999999999986642---175666789982231-------25----78899985158717---87631564--20 Q gi|254781011|r 53 SFVRARSMIMDLTAKTVLRN---IGFESIDIIAGGETA-------GI----PFATLLAERLNLPM---IYVRKKSK--KH 113 (228) Q Consensus 53 s~P~~~~~i~~~~~~~i~~~---~~~~~~d~I~G~a~~-------Gi----p~a~~iA~~l~~p~---~~vRK~~K--~h 113 (228) .+++....++.+++..+... .....+|+|+-+|+. |. -+|..+|..+++|+ +..|.... .+ T Consensus 85 ~~~~l~~~la~~l~~~~~~~~~~~~~~~~D~IvPVPlh~~R~~~RGfNQa~~lA~~la~~l~~p~~~~~L~R~r~t~~Q~ 164 (227) T PRK11595 85 RRSELASALARLLLLEVLHARRSTGLQLPDRIVSVPLWQRRHWRRGFNQSDLLCRPLAHWLGCDYDSETLTRTRATATQH 164 (227) T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHEECCCCCCCC T ss_conf 86789999999999999985003366787848723899899987378889999999999838996301323135876745 Q ss_pred HHH-----HHHHHCC-----CCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE Q ss_conf 110-----0133103-----7334144087887322369999999986598785688887 Q gi|254781011|r 114 GQK-----SQIEGHL-----FKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 114 G~~-----~~iEG~~-----~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228) |.+ ..+.|.| .+|++|++||||+|||.|+.++.++|+++|+.-+.++++- T Consensus 165 ~ls~~~R~~Nv~~aF~~~~~~~g~~vlLVDDV~TTGaTl~~~a~~L~~aGa~~V~v~~la 224 (227) T PRK11595 165 FLSARLRKRNLKNAFRLELPVQGQHMVIVDDVVTTGSTVAEIAQLLLRNGAATVQVWCLC 224 (227) T ss_pred CCCHHHHHHHHHCCEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEE T ss_conf 689999986542887845788969799962014639999999999998099879999999 No 49 >PRK09246 amidophosphoribosyltransferase; Provisional Probab=98.80 E-value=4e-07 Score=67.36 Aligned_cols=165 Identities=18% Similarity=0.199 Sum_probs=116.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC--CC---HH----------HHH Q ss_conf 999999999999866421756667899822312578899985158717--87631564--20---11----------001 Q gi|254781011|r 56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK--KH---GQ----------KSQ 118 (228) Q Consensus 56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K--~h---G~----------~~~ 118 (228) ..|..+...+++.+.+.....++|+|+|+|-.|+|.|...|..+++|+ .++|..-. .| +. -+. T Consensus 272 ~~R~~lG~~LA~~i~~~~~~~~~DvVi~VPdSg~~aA~gya~~sgipy~~gliKNrYvgRTFI~P~q~~R~~~vr~Kln~ 351 (503) T PRK09246 272 KARLRMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNA 351 (503) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHCCCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCEEC T ss_conf 99999999999998865787668625007997188999999971996120121036557677698688999867652003 Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHH-----------HHCCC Q ss_conf 331037334144087887322369999999986598785688887-------417632489999-----------97798 Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARF-----------RENNI 180 (228) Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l-----------~~~gi 180 (228) +. ...+|+||++|||-|--|+|+...|+.|+++||+-+.+.+-- .|+..-...+.| +..|. T Consensus 352 i~-~~i~gK~vvlVDDSIVRGtT~k~Iv~~Lr~aGAkeVh~riasPpi~~Pc~yGID~~~~~eLIA~~~~~eei~~~iga 430 (503) T PRK09246 352 IR-AEFKGKNVLLVDDSIVRGTTSEQIVQMARDAGAKKVYFASAAPPVRYPNVYGIDMPTANELIAHGRTVEEIRQLIGA 430 (503) T ss_pred CH-HHCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCC T ss_conf 64-31569769998455311641999999999759988999967998578776734789979996569999999988599 Q ss_pred EEEEECCHHHHHHHHHHC------------------CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 099963299999999988------------------89998999999999972997788 Q gi|254781011|r 181 KLHYLATWNDILTIAEKL------------------KIFNHDVLEEVRCFLDNPMQWSK 221 (228) Q Consensus 181 ~~~sl~t~~~il~~l~~~------------------~~I~~~~~~~I~~~l~dP~~W~~ 221 (228) .-..-+++++|.+..-.. +.++++-++.+++-+++-.+..+ T Consensus 431 DsL~yls~e~l~~a~~~~~~~~~~~c~acftG~Ypt~~~~~~y~~~~e~~~~~~~~~~~ 489 (503) T PRK09246 431 DGLIYQDLEDLIEAVRDGNPDIKQFECSCFDGEYVTGDVDQEYLDRLEQLRNDDAKAKR 489 (503) T ss_pred CEEEEECHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHH T ss_conf 75886559999999743488756723436678166999799999999987470545443 No 50 >PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional Probab=98.77 E-value=1.4e-07 Score=70.24 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=76.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC------CCEEEE-----ECCCCCCHHHHH Q ss_conf 135798999999999999866421756667899822312578899985158------717876-----315642011001 Q gi|254781011|r 50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN------LPMIYV-----RKKSKKHGQKSQ 118 (228) Q Consensus 50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~------~p~~~v-----RK~~K~hG~~~~ 118 (228) .+++ ++.....+.-++.+|.++....+-=+++|+..+|.++|.-++..+. .|+.++ |-.-...|.... T Consensus 5 ~il~-~~~I~~~i~RlA~qI~E~~~~~~~lvlvGI~~~G~~lA~rL~~~L~~~~~~~~~~~~ldit~yRDD~~~~~~~~~ 83 (176) T PRK05205 5 EILD-AEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEELEGVDVPVGELDITLYRDDLTKKGLHPQ 83 (176) T ss_pred CCCC-HHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCC T ss_conf 8569-999999999999999986799886799998788999999999998787689872468887887315233578875 Q ss_pred HHH-C---CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEEEEECC Q ss_conf 331-0---3733414408788732236999999998659-8785688887417 Q gi|254781011|r 119 IEG-H---LFKGARVLVIEDLVTLGNSMFEFVKVIRDSG-GIIQDGIGLFFYD 166 (228) Q Consensus 119 iEG-~---~~~g~~vliVDDviTtG~S~~~~i~~l~~~g-~~V~~~~vii~~~ 166 (228) +.. . -.+|+.|++||||+-||.|+..+++++-..| ..-+..+|++||+ T Consensus 84 ~~~~~i~~~~~gk~ViLVDDVL~TGrTlraal~~l~~~grP~~I~lavLVDR~ 136 (176) T PRK05205 84 VKPTDIPFDIEGKTVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176) T ss_pred CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCC T ss_conf 55545764447888999831022368999999988636988679999999089 No 51 >COG1926 Predicted phosphoribosyltransferases [General function prediction only] Probab=98.59 E-value=1.2e-06 Score=64.33 Aligned_cols=149 Identities=21% Similarity=0.221 Sum_probs=99.1 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC----CC--------H------------- Q ss_conf 999999866421756667899822312578899985158717--87631564----20--------1------------- Q gi|254781011|r 62 MDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK----KH--------G------------- 114 (228) Q Consensus 62 ~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K----~h--------G------------- 114 (228) ...+++.|....+ .+.-.+.|.+-||+|.|..+|..++.|+ +++||-.- +. | T Consensus 11 Gr~La~~l~~~~~-~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~~ 89 (220) T COG1926 11 GRKLAQELAALRD-LKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSLG 89 (220) T ss_pred HHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCHHCEEEECCCCCEECCHHHHHHCC T ss_conf 9999999985333-798379974688716799999986997369999634899982230366526996751066666346 Q ss_pred -HHHHHHH----------------------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHH Q ss_conf -1001331----------------------03733414408788732236999999998659878568888741763248 Q gi|254781011|r 115 -QKSQIEG----------------------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEV 171 (228) Q Consensus 115 -~~~~iEG----------------------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~ 171 (228) ....+++ .-.+|+.|+||||=+.||.|+..+++.+|..++.-.-++|=+ - -+.+ T Consensus 90 i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV--~-p~~a 166 (220) T COG1926 90 IDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPV--A-PEDA 166 (220) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCC--C-CHHH T ss_conf 899999999999999999999997288998788889899970772120779999999986288608998445--9-7899 Q ss_pred HHHHHHCCCEEEEECC---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 9999977980999632---999999999888999899999999997299 Q gi|254781011|r 172 PARFRENNIKLHYLAT---WNDILTIAEKLKIFNHDVLEEVRCFLDNPM 217 (228) Q Consensus 172 ~~~l~~~gi~~~sl~t---~~~il~~l~~~~~I~~~~~~~I~~~l~dP~ 217 (228) ...|+...-.+.++.+ +.-+=++..+ +.+-.-+.+..+|..+. T Consensus 167 ~~~l~s~~D~vvc~~~P~~F~AVg~~Y~d---F~q~sdeEV~~lL~~a~ 212 (220) T COG1926 167 AAELESEADEVVCLYMPAPFEAVGEFYRD---FRQVSDEEVRALLRRAN 212 (220) T ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHH---HHHCCHHHHHHHHHHCC T ss_conf 99998546759998278548999999977---76538999999998513 No 52 >COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only] Probab=98.58 E-value=2.3e-07 Score=68.95 Aligned_cols=106 Identities=25% Similarity=0.350 Sum_probs=66.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC-------HHHHHHHHHH----HCCCCEEEEECCC--CCCHH-----HH Q ss_conf 99999999999986642175666789982231-------2578899985----1587178763156--42011-----00 Q gi|254781011|r 56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETA-------GIPFATLLAE----RLNLPMIYVRKKS--KKHGQ-----KS 117 (228) Q Consensus 56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~-------Gip~a~~iA~----~l~~p~~~vRK~~--K~hG~-----~~ 117 (228) .....+++.+...+.. ....+|.|+-+|.. |.--+..+|. .++.|....|... -.+|. .. T Consensus 92 ~l~~~la~~l~~~~~~--~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~~l~r~k~~~~q~~l~~~~rr~ 169 (225) T COG1040 92 DLAKLLARLLAKALDD--FLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPIALRRVKDTSPQQGLKALERRR 169 (225) T ss_pred HHHHHHHHHHHHHHHH--CCCCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCHHHEECCCCCCCCCCCHHHHHH T ss_conf 7899999999998651--13466759973698778874687899999999877647642110000673100455589998 Q ss_pred HHHHCC------CCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE Q ss_conf 133103------7334144087887322369999999986598785688887 Q gi|254781011|r 118 QIEGHL------FKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 118 ~iEG~~------~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228) .++|.+ ....+|++||||+|||.|+.++.+.|++.|+..+.++++. T Consensus 170 nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~~v~~~~la 221 (225) T COG1040 170 NLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAKRVFVLTLA 221 (225) T ss_pred HCCCCEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 4605631478767677289994006667999999999997599169999998 No 53 >COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Probab=98.58 E-value=1.9e-07 Score=69.49 Aligned_cols=137 Identities=16% Similarity=0.215 Sum_probs=90.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC------------CCH---HHH Q ss_conf 8999999999999866421756667899822312578899985158717--87631564------------201---100 Q gi|254781011|r 55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK------------KHG---QKS 117 (228) Q Consensus 55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K------------~hG---~~~ 117 (228) -..|..+.+.+++.... +.|+|+++|-.|+|.|...|..+++|+ -++|-.-. ..| +.+ T Consensus 266 y~~R~~mG~~La~e~~~-----eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLn 340 (470) T COG0034 266 YEARKRMGEKLAEEIPV-----EADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLN 340 (470) T ss_pred HHHHHHHHHHHHHHCCC-----CCCEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHCC T ss_conf 99999999999875873-----3657983498876899999998399655552102324346668867887750303037 Q ss_pred HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHHHH-----------CC Q ss_conf 1331037334144087887322369999999986598785688887-------41763248999997-----------79 Q gi|254781011|r 118 QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARFRE-----------NN 179 (228) Q Consensus 118 ~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l~~-----------~g 179 (228) .+... .+|+||++|||-|-.|+|+...|+.+|++||+-+.+..-- .|+..-..++.|-. .| T Consensus 341 pvr~~-v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~eLIA~~~~~eeI~~~Ig 419 (470) T COG0034 341 PVREV-VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAANRTVEEIRKAIG 419 (470) T ss_pred CHHHH-HCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHC T ss_conf 01788-58976999726514576699999999971887889984289756778664578998999647898899998848 Q ss_pred CEEEEECCHHHHHHHHHH Q ss_conf 809996329999999998 Q gi|254781011|r 180 IKLHYLATWNDILTIAEK 197 (228) Q Consensus 180 i~~~sl~t~~~il~~l~~ 197 (228) ..-..-++++.+.+.... T Consensus 420 aDSL~yLslegL~~aig~ 437 (470) T COG0034 420 ADSLAYLSLEGLIKAIGR 437 (470) T ss_pred CCCEEEECHHHHHHHHCC T ss_conf 770464249999999679 No 54 >COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism] Probab=98.54 E-value=7.4e-07 Score=65.60 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=79.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHC------CCCE-----EEEECCCCCCH-HHH Q ss_conf 13579899999999999986642175666789982231257889998515------8717-----87631564201-100 Q gi|254781011|r 50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERL------NLPM-----IYVRKKSKKHG-QKS 117 (228) Q Consensus 50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l------~~p~-----~~vRK~~K~hG-~~~ 117 (228) .+++.-+.++.++....+.|..+.+. +--+++|+.++|+|+|.-++.++ ++|+ .+-|-.-+.-+ ... T Consensus 5 ~ild~~~i~RtitRia~eIiErnk~~-~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p 83 (179) T COG2065 5 EILDEAAIRRTITRIAHEIIERNKGL-DNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRP 83 (179) T ss_pred EECCHHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECHHHHCCCCCC T ss_conf 70799999999999999999970799-85599967428789999999999887377887036876785141331576677 Q ss_pred HHHHCC----CCCCCEEEHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEEEEECC Q ss_conf 133103----733414408788732236999999998659-8785688887417 Q gi|254781011|r 118 QIEGHL----FKGARVLVIEDLVTLGNSMFEFVKVIRDSG-GIIQDGIGLFFYD 166 (228) Q Consensus 118 ~iEG~~----~~g~~vliVDDviTtG~S~~~~i~~l~~~g-~~V~~~~vii~~~ 166 (228) ++.+.. ..|++|++||||+-||.|+..++++|.+.| ...+..+|++||+ T Consensus 84 ~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRG 137 (179) T COG2065 84 QAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRG 137 (179) T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCC T ss_conf 656764752446878999820111472499999999864985358999998388 No 55 >PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional Probab=98.51 E-value=1.9e-06 Score=62.86 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=92.6 Q ss_pred ECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC-----CCCCEEEEECCCHHHHHHHHHHHC---C Q ss_conf 07898673118726401426213579899999999999986642175-----666789982231257889998515---8 Q gi|254781011|r 29 SPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGF-----ESIDIIAGGETAGIPFATLLAERL---N 100 (228) Q Consensus 29 ~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~-----~~~d~I~G~a~~Gip~a~~iA~~l---~ 100 (228) .|.|| .+.+|+.|.= +...++-.-+.-..-+..++..|.++... .++=+++|+=-|+++|.+-+...+ + T Consensus 7 ~~~~~-~~~~~~~~~p--~~~~vL~seeeI~~rV~elg~qIs~dY~~~~l~~~~pL~vigVLkGs~~F~aDL~R~i~~~~ 83 (211) T PTZ00271 7 SPSGP-VGDEGRRNYP--MSAHTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEG 83 (211) T ss_pred CCCCC-CCCCCCCCCC--CHHEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCC T ss_conf 89887-6777876685--45306768999999999999999998703554678976999984570999999999712369 Q ss_pred CCE--EEEECCCCCCHHHHHHHH---------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC Q ss_conf 717--876315642011001331---------03733414408788732236999999998659878568888741 Q gi|254781011|r 101 LPM--IYVRKKSKKHGQKSQIEG---------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228) Q Consensus 101 ~p~--~~vRK~~K~hG~~~~iEG---------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228) +|+ -|++- +.||.+..--| .-.+|+.||||||++-||.|+....+.++..|+.-+.++++++. T Consensus 84 ip~~iDFm~v--SSYg~gt~SsG~v~i~~dl~~~i~gk~VLIVEDIvDTG~TL~~l~~~l~~~~p~Svki~tLl~K 157 (211) T PTZ00271 84 VPVKVEFICA--SSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDK 157 (211) T ss_pred CCEEEEEEEE--EECCCCCEECCEEEEEECCCCCCCCCEEEEEECHHCCCHHHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 9838899996--2069997107528994458877689879999413212558999999998549983899997847 No 56 >COG2236 Predicted phosphoribosyltransferases [General function prediction only] Probab=98.50 E-value=3.1e-07 Score=68.07 Aligned_cols=98 Identities=16% Similarity=0.336 Sum_probs=71.7 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHH------ Q ss_conf 21357989999999999998664217566678998223125788999851587-17876315642011001331------ Q gi|254781011|r 49 RKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNL-PMIYVRKKSKKHGQKSQIEG------ 121 (228) Q Consensus 49 r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~-p~~~vRK~~K~hG~~~~iEG------ 121 (228) +.+.|+-+. ...|..++++|.+.. -.+|+|++++-||+-.|-.+|..|++ |+..+- .+-|+.....+| T Consensus 4 ~~~vSw~~I-~~~~~~lA~kI~~s~--~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~--v~~y~~~~~~~~~~~v~~ 78 (192) T COG2236 4 KLYVSWEEI-HRLCRALAEKIRASG--FKPDVIVAIARGGLIPARILSDFLGVKPLYSIK--VEHYDETAERDGEAKVKY 78 (192) T ss_pred EEEECHHHH-HHHHHHHHHHHHHCC--CCCCEEEEECCCCEEHHHHHHHHHCCCCEEEEE--EEEEHHHCCCCCCCEEEC T ss_conf 299649999-999999999999749--877689998678602799999986887247999--888500112377633612 Q ss_pred --CC--CCCCCEEEHHHHHHHHHHHHHHHHHHHH Q ss_conf --03--7334144087887322369999999986 Q gi|254781011|r 122 --HL--FKGARVLVIEDLVTLGNSMFEFVKVIRD 151 (228) Q Consensus 122 --~~--~~g~~vliVDDviTtG~S~~~~i~~l~~ 151 (228) .+ ..|+|||||||+.-||.|+..+.+.|++ T Consensus 79 ~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~l~~ 112 (192) T COG2236 79 PITIDPLSGKKVLIVDDIVDTGETLELALEELKK 112 (192) T ss_pred CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 7654655898589982333761769999999985 No 57 >PRK06388 amidophosphoribosyltransferase; Provisional Probab=98.37 E-value=1.8e-06 Score=63.09 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=88.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--CH--HHHHHH--------- Q ss_conf 999999999999866421756667899822312578899985158717--876315642--01--100133--------- Q gi|254781011|r 56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--HG--QKSQIE--------- 120 (228) Q Consensus 56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--hG--~~~~iE--------- 120 (228) +.|..+...+++. .. .+.|+|+|+|-.|+|.|...|..+++|+ .++|..-.+ += +.+..+ T Consensus 275 ~~R~~lG~~LA~e----~~-~~~DiVi~VPdSg~~aa~gya~~sgip~~~glikn~y~gRTFI~p~q~~R~~~v~~Kln~ 349 (474) T PRK06388 275 QARVRMGMRLAKE----SP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNP 349 (474) T ss_pred HHHHHHHHHHHHH----CC-CCCCEEEECCCCHHHHHHHHHHHCCCCCHHCEEECCCCCCCCCCCCHHHHHHCCCEEEEE T ss_conf 9999999998634----79-888889957886199999999865994110056535447652388677787444266665 Q ss_pred -HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHH-----------HHCCCE Q ss_conf -1037334144087887322369999999986598785688887-------417632489999-----------977980 Q gi|254781011|r 121 -GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARF-----------RENNIK 181 (228) Q Consensus 121 -G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l-----------~~~gi~ 181 (228) ....+|+||++|||-|-.|+|+...++.||++||+-+.+.+-- .|+..-...+.| +..|.. T Consensus 350 i~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pC~yGID~p~~~eLiA~~~~~eei~~~igaD 429 (474) T PRK06388 350 IREVISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPHIIAPCYFGVDMKTKDQFIARGKTDEEINNEIGAD 429 (474) T ss_pred EEEEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCC T ss_conf 02441798899981661656679999999997799889999789996788666237899799965799999999985998 Q ss_pred EEEECCHHHHHHHH Q ss_conf 99963299999999 Q gi|254781011|r 182 LHYLATWNDILTIA 195 (228) Q Consensus 182 ~~sl~t~~~il~~l 195 (228) -..-++++++.+.+ T Consensus 430 sL~yls~e~l~~a~ 443 (474) T PRK06388 430 SLAFLSIDGLKQAI 443 (474) T ss_pred EEEEECHHHHHHHH T ss_conf 68932799999986 No 58 >PRK08525 amidophosphoribosyltransferase; Provisional Probab=98.32 E-value=1.7e-06 Score=63.21 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=87.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--CH--HHHH----HH---- Q ss_conf 8999999999999866421756667899822312578899985158717--876315642--01--1001----33---- Q gi|254781011|r 55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--HG--QKSQ----IE---- 120 (228) Q Consensus 55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--hG--~~~~----iE---- 120 (228) -+.|..+...+++.. . .+.|+|+|+|-.|+|.|...|..+++|+ .++|..-.+ += +.+. +. T Consensus 258 y~~R~~~G~~La~~~----~-v~~D~Vi~VPdsg~~~a~gya~~~~ip~~~~likn~y~gRtFI~p~q~~R~~~v~~Kln 332 (445) T PRK08525 258 YEVRKKMGEELAKKF----A-VKADFVVPVPDSGVSAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLN 332 (445) T ss_pred HHHHHHHHHHHHHHC----C-CCCCCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEE T ss_conf 999999999986256----8-67881786589857889999998299455531222002630148854455653232300 Q ss_pred --HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHHH-----------HCCC Q ss_conf --1037334144087887322369999999986598785688887-------4176324899999-----------7798 Q gi|254781011|r 121 --GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARFR-----------ENNI 180 (228) Q Consensus 121 --G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l~-----------~~gi 180 (228) ....+|++|++|||-|-.|+|+...++.|+++||+-+.+.+-- .|+..-...+.|- ..|. T Consensus 333 p~~~~i~gK~vvlvDDSIVRGtT~k~ii~~Lr~aGakeVh~~i~sPpi~~pC~yGiD~~~~~eLia~~~~~eei~~~iga 412 (445) T PRK08525 333 PMRKVLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGASEIHMAIACPEIKFPCTYGIDTPTFEELISANKSVEEVRKYIGA 412 (445) T ss_pred EHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCC T ss_conf 23452179869998176155778999999999779988999968999688866766789989997579999999988599 Q ss_pred EEEEECCHHHHHHHH Q ss_conf 099963299999999 Q gi|254781011|r 181 KLHYLATWNDILTIA 195 (228) Q Consensus 181 ~~~sl~t~~~il~~l 195 (228) .-..-++++++.+.+ T Consensus 413 dsL~yls~e~l~~ai 427 (445) T PRK08525 413 DSLSFLSIEELTRSI 427 (445) T ss_pred CEEEEECHHHHHHHH T ss_conf 869942799999984 No 59 >PRK07349 amidophosphoribosyltransferase; Provisional Probab=98.32 E-value=1.8e-06 Score=63.07 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=73.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--C----------H-HHH--H Q ss_conf 999999999999866421756667899822312578899985158717--876315642--0----------1-100--1 Q gi|254781011|r 56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--H----------G-QKS--Q 118 (228) Q Consensus 56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--h----------G-~~~--~ 118 (228) +.|..+...+++. . ..+.|+|+|+|-.|+|.|...|..+++|+ .++|..-.+ | + +.+ . T Consensus 291 ~~R~~~G~~LA~e----~-~v~~DiVi~VPdSg~~aA~gya~~sgipy~~glikn~YvgRTFI~p~q~~R~~~vr~Kln~ 365 (495) T PRK07349 291 SYRQRLGQQLAKE----S-PVDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQAMRESGIRMKLNP 365 (495) T ss_pred HHHHHHHHHHHCC----C-CCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEE T ss_conf 9999999987260----6-8888638978996299999999973997122012045446555187588876320132013 Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 3310373341440878873223699999999865987856888 Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG 161 (228) Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v 161 (228) +. ...+|+||++|||-|-.|+|+...|+.||++||+-+.+.+ T Consensus 366 ~~-~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri 407 (495) T PRK07349 366 LK-DVLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRI 407 (495) T ss_pred CH-HHHCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEE T ss_conf 67-8858985999826605574699999999976998899996 No 60 >PRK09177 xanthine-guanine phosphoribosyltransferase; Validated Probab=98.32 E-value=1.7e-06 Score=63.30 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=63.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEE-EEECCCCCCHHH---HHHHHCCCCCC Q ss_conf 57989999999999998664217566678998223125788999851587178-763156420110---01331037334 Q gi|254781011|r 52 ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI-YVRKKSKKHGQK---SQIEGHLFKGA 127 (228) Q Consensus 52 ~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~-~vRK~~K~hG~~---~~iEG~~~~g~ 127 (228) +|+-+ ....+..++++|.+.. .+|.|+|++-||...|..+|+.|+++.+ .+.-+.-++... +.+-..-..|+ T Consensus 10 iSW~e-i~~~~~~LA~kI~~~~---~~d~IV~IaRGGliPA~~ls~~L~i~~i~~i~v~~Y~~~~~~~~~v~~~~~~~gk 85 (156) T PRK09177 10 VSWDQ-LHRDARALAWRLLPAG---QWKGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLKAAEGDGE 85 (156) T ss_pred EEHHH-HHHHHHHHHHHHHHCC---CCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCEEECCCCCCCC T ss_conf 54999-9999999999998508---9866999914783159999998598405799999615665565425416777786 Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHH Q ss_conf 144087887322369999999986 Q gi|254781011|r 128 RVLVIEDLVTLGNSMFEFVKVIRD 151 (228) Q Consensus 128 ~vliVDDviTtG~S~~~~i~~l~~ 151 (228) |||||||+.-||.|+..+.+.+.+ T Consensus 86 kVLIVDDI~DTG~Tl~~vk~~~~~ 109 (156) T PRK09177 86 GFLVVDDLVDTGGTARAVREMYPK 109 (156) T ss_pred EEEEEECCCCCCHHHHHHHHHCCC T ss_conf 289995343663789999986788 No 61 >PRK06781 amidophosphoribosyltransferase; Provisional Probab=98.31 E-value=2.9e-06 Score=61.77 Aligned_cols=135 Identities=18% Similarity=0.210 Sum_probs=88.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--C----------H---HHH Q ss_conf 8999999999999866421756667899822312578899985158717--876315642--0----------1---100 Q gi|254781011|r 55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--H----------G---QKS 117 (228) Q Consensus 55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--h----------G---~~~ 117 (228) -+.|..+...+++.. . .+.|+|+|+|-.|+|.|...|..+++|+ .++|..-.+ | + +-+ T Consensus 266 y~~R~~~G~~LA~e~----~-~~~DvVi~VPdSg~~aA~gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln 340 (471) T PRK06781 266 HAARKNMGKRLAAEA----P-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLS 340 (471) T ss_pred HHHHHHHHHHHHHHC----C-CCCCEEEECCCCCHHHHHHHHHHHCCCHHHCEEECCCCCCCCCCCCHHHHHHHHHHCCE T ss_conf 999999999986217----9-88898997898738899999998099744430100201443538758899876530110 Q ss_pred HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHHH-----------HCC Q ss_conf 1331037334144087887322369999999986598785688887-------4176324899999-----------779 Q gi|254781011|r 118 QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARFR-----------ENN 179 (228) Q Consensus 118 ~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l~-----------~~g 179 (228) .+. ...+|++|++|||-|--|+|+...++.|+++||+-+.+.+-- .|+..-...+.|- ..| T Consensus 341 ~~~-~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~Pc~yGID~p~~~eLIA~~~~~eei~~~ig 419 (471) T PRK06781 341 AVR-GVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPPLKYPCFYGIDIQTRKELIAANHTVEEIREMIG 419 (471) T ss_pred ECC-CCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHC T ss_conf 410-0048988999816605575699999999977998899996899857876665478997998627999999998859 Q ss_pred CEEEEECCHHHHHHHH Q ss_conf 8099963299999999 Q gi|254781011|r 180 IKLHYLATWNDILTIA 195 (228) Q Consensus 180 i~~~sl~t~~~il~~l 195 (228) ..-..-++++++.+.. T Consensus 420 aDsL~yls~e~l~~ai 435 (471) T PRK06781 420 ADSLTFLSEDGLVDAI 435 (471) T ss_pred CCEEEEECHHHHHHHH T ss_conf 9869830799999985 No 62 >PRK07272 amidophosphoribosyltransferase; Provisional Probab=98.31 E-value=1.8e-06 Score=63.14 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=90.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC--CC----------H-HHH-- Q ss_conf 8999999999999866421756667899822312578899985158717--87631564--20----------1-100-- Q gi|254781011|r 55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK--KH----------G-QKS-- 117 (228) Q Consensus 55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K--~h----------G-~~~-- 117 (228) -+.|..+...+++. .. .+.|+|+++|-.|+|.|...|..+++|+ .++|..-. .+ + +.+ T Consensus 268 y~~R~~~G~~LA~e----~~-~~~DvVi~VPdSg~~aA~Gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln 342 (484) T PRK07272 268 HTARKRMGKRLAQE----FP-VDADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLS 342 (484) T ss_pred HHHHHHHHHHHHHH----CC-CCCCCCCCCCCCHHHHHHHHHHHCCCCHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 99999999999835----78-77872500788538999999987299511051450311345789967888873634010 Q ss_pred HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHH----------H-HCC Q ss_conf 1331037334144087887322369999999986598785688887-------417632489999----------9-779 Q gi|254781011|r 118 QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARF----------R-ENN 179 (228) Q Consensus 118 ~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l----------~-~~g 179 (228) .+. ...+|+||++|||-|-.|+|+...++.|+++||+-+.+.+-- .|+..-...+.| . ..| T Consensus 343 ~~~-~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~rissPpi~~pc~yGID~~t~~eLIA~~~~~eei~~~ig 421 (484) T PRK07272 343 AVS-GVVKGKRVVMVDDSIVRGTTSRRIVKLLKEAGAKEVHVRIASPELKYPCFYGIDIQTRAELISANHSVEEICDIIG 421 (484) T ss_pred CCH-HHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHC T ss_conf 254-5537975999825411267599999999977998899996899857875565689998999618999999998859 Q ss_pred CEEEEECCHHHHHHHH Q ss_conf 8099963299999999 Q gi|254781011|r 180 IKLHYLATWNDILTIA 195 (228) Q Consensus 180 i~~~sl~t~~~il~~l 195 (228) ..-..-+++++|.+.. T Consensus 422 adsL~ylsle~l~~ai 437 (484) T PRK07272 422 ADSLTYLSVDGLIESI 437 (484) T ss_pred CCEEEEECHHHHHHHH T ss_conf 9758843699999985 No 63 >PRK07631 amidophosphoribosyltransferase; Provisional Probab=98.29 E-value=2.3e-06 Score=62.35 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=89.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--C----------H-HHH--H Q ss_conf 999999999999866421756667899822312578899985158717--876315642--0----------1-100--1 Q gi|254781011|r 56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--H----------G-QKS--Q 118 (228) Q Consensus 56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--h----------G-~~~--~ 118 (228) +.|..+...+++. . ..+.|+|+|+|-.|+|.|...|...++|+ .++|..-.+ | + +.+ . T Consensus 267 ~~R~~~G~~LA~e----~-~~~~DvVi~VPDSg~~aA~gya~~sgip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~ 341 (475) T PRK07631 267 TARKNLGKQLAEE----A-PVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSA 341 (475) T ss_pred HHHHHHHHHHHHH----C-CCCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHCCCEECCCCCCCCHHHHHHHHHCCEEE T ss_conf 9999999999832----7-9878889978996388999999872995454110013014657797588998744201424 Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHH-----------HHCCC Q ss_conf 331037334144087887322369999999986598785688887-------417632489999-----------97798 Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARF-----------RENNI 180 (228) Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l-----------~~~gi 180 (228) +. ...+|+||++|||-|-.|+|+...++.|+++||+-+.+.+-- .|+..-...+.| +..|. T Consensus 342 ~~-~~v~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri~sPpi~~pc~yGID~~~~~eLIA~~~~~eei~~~iga 420 (475) T PRK07631 342 VR-GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSPPIAHPCFYGIDTSTHEELIASSHSVEEIRQEIGA 420 (475) T ss_pred CC-CCCCCCEEEEEECCEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCC T ss_conf 42-00389737997443510641999999999769988999968998578766643789978986479999999998599 Q ss_pred EEEEECCHHHHHHHH Q ss_conf 099963299999999 Q gi|254781011|r 181 KLHYLATWNDILTIA 195 (228) Q Consensus 181 ~~~sl~t~~~il~~l 195 (228) .-..-++++++.+.. T Consensus 421 dsL~yls~e~l~~ai 435 (475) T PRK07631 421 DSLAFLSVEGLLKGI 435 (475) T ss_pred CEEEEECHHHHHHHH T ss_conf 868831699999985 No 64 >PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional Probab=98.29 E-value=1.1e-05 Score=57.99 Aligned_cols=111 Identities=20% Similarity=0.294 Sum_probs=81.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCCCHHH---HHHH----- Q ss_conf 35798999999999999866421756667899822312578899985158717--8763156420110---0133----- Q gi|254781011|r 51 LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKKHGQK---SQIE----- 120 (228) Q Consensus 51 ~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~hG~~---~~iE----- 120 (228) +++.-+....| ..++..|.++....++ +++++-.||++|++-+..+++.|. -|++- +.|+-. +.++ T Consensus 16 lis~eeI~~rI-~~lA~~I~~~y~~~~~-viI~vL~Ga~~F~adL~r~l~~~~~vdfi~~--sSY~~~~ssg~v~~~~~~ 91 (181) T PRK09162 16 LVSAAEVEAAI-DRMADEITADLADENP-LVLCVMNGGLVFTGQLLPRLDFPLEFDYLHA--TRYRNETTGGELVWKVKP 91 (181) T ss_pred CCCHHHHHHHH-HHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHCCCCEEEEEEEE--ECCCCCCCCCCEEEEECC T ss_conf 26799999999-9999999998289984-8999957849999999985799837777786--124897757847997357 Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC Q ss_conf 103733414408788732236999999998659878568888741 Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228) Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228) ..-.+|+.|+||||++-||.|+....+.++..|+.-+-++++++. T Consensus 92 ~~~i~gk~VLiVeDIvDTG~Tl~~l~~~l~~~gp~Svki~~LldK 136 (181) T PRK09162 92 RESLKGRTVLVVDDILDEGHTLAAIRDWCLEMGAAEVYSAVLVDK 136 (181) T ss_pred CCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 756689869999318762799999999997049988999999965 No 65 >PRK07847 amidophosphoribosyltransferase; Provisional Probab=98.29 E-value=3.3e-06 Score=61.34 Aligned_cols=135 Identities=20% Similarity=0.261 Sum_probs=89.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--CH--HHH-----------H Q ss_conf 999999999999866421756667899822312578899985158717--876315642--01--100-----------1 Q gi|254781011|r 56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--HG--QKS-----------Q 118 (228) Q Consensus 56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--hG--~~~-----------~ 118 (228) +.|..+...+++.. . .+.|+|+|+|-.|+|.|...|...++|+ .++|..-.+ += +.+ . T Consensus 261 ~~R~~~G~~LA~e~----~-~~~D~Vi~VPdSg~~aA~gyA~~sgip~~~gliKn~yvgRTFI~p~q~~R~~~v~~Kln~ 335 (489) T PRK07847 261 AARVEIGRRLAREH----P-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNP 335 (489) T ss_pred HHHHHHHHHHHHHC----C-CCCCEEEECCCCHHHHHHHHHHHCCCCHHHCEEECCCCCCCEECCCHHHHHHCCCEEEEC T ss_conf 99999999987437----8-889979856997199999999973995444200146147401378665666365147740 Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCCCHHHHHHH-----------HHCCC Q ss_conf 331037334144087887322369999999986598785688887-------417632489999-----------97798 Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDIFPEVPARF-----------RENNI 180 (228) Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~~~~~~~~l-----------~~~gi 180 (228) + ..+.+|++|++|||-|-.|+|+...++.|+++|++-+.+.+-- .|+..-...+.| +..|. T Consensus 336 i-~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~riasPpi~~PC~YGID~pt~~ELIA~~~s~eeI~~~iga 414 (489) T PRK07847 336 L-REVIRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIASPPVKWPCFYGIDFATPAELIANGVTVEAVRRSIGA 414 (489) T ss_pred C-HHEECCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCC T ss_conf 2-641779879998478356677999999999769988999968998578876744789989996389999999998699 Q ss_pred EEEEECCHHHHHHHHH Q ss_conf 0999632999999999 Q gi|254781011|r 181 KLHYLATWNDILTIAE 196 (228) Q Consensus 181 ~~~sl~t~~~il~~l~ 196 (228) .-..-+++++|.+..- T Consensus 415 DSL~ylsle~L~~aig 430 (489) T PRK07847 415 DSLGYISLDGMIAATE 430 (489) T ss_pred CEEEEECHHHHHHHHC T ss_conf 8688316999999867 No 66 >PRK09123 amidophosphoribosyltransferase; Provisional Probab=98.28 E-value=4.4e-06 Score=60.52 Aligned_cols=100 Identities=20% Similarity=0.282 Sum_probs=74.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCC--C----------H---HHHH Q ss_conf 999999999999866421756667899822312578899985158717--876315642--0----------1---1001 Q gi|254781011|r 56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKK--H----------G---QKSQ 118 (228) Q Consensus 56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~--h----------G---~~~~ 118 (228) +.|..+...+++. . ..+.|+|+++|-.|+|.|...|..+++|+ .++|..-.+ + + +-+. T Consensus 270 ~~R~~~G~~LA~e---~--~~~~DiVi~VPdSg~~aA~gya~~~gip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~ 344 (480) T PRK09123 270 EVRKNIGRELARE---S--PVDADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNA 344 (480) T ss_pred HHHHHHHHHHHHH---C--CCCCCEEEECCCCCHHHHHHHHHHCCCCHHHCEEECCCCCCCCCCCCHHHHHHCCEEEEEE T ss_conf 9999999999600---7--9875527756676446789888763996112253124215774388787776370775640 Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 3310373341440878873223699999999865987856888 Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG 161 (228) Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v 161 (228) + ....+|++|++|||-|--|+|+...|+.|+++||+-+.+.+ T Consensus 345 ~-~~~i~gK~vvlVDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri 386 (480) T PRK09123 345 N-RAVIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 386 (480) T ss_pred C-CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEE T ss_conf 3-33458982999806615367699999999977998899996 No 67 >PRK05793 amidophosphoribosyltransferase; Provisional Probab=98.27 E-value=2.5e-06 Score=62.19 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=73.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEE--EEECCCCC--C----------HH-HHH-H Q ss_conf 9999999999998664217566678998223125788999851587178--76315642--0----------11-001-3 Q gi|254781011|r 56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI--YVRKKSKK--H----------GQ-KSQ-I 119 (228) Q Consensus 56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~--~vRK~~K~--h----------G~-~~~-i 119 (228) +.|..+...+++. .. .+.|+|+|+|-.|+|.|...|...++|+. ++|..-.+ + +- .++ . T Consensus 275 ~~R~~lG~~LA~e----~~-~~~DvV~~VPdSg~~aA~gya~~sgip~~~glikn~yvgRTFI~p~q~~R~~~v~~Kln~ 349 (472) T PRK05793 275 ESRVRAGEQLYKE----YP-VDADIVIGVPDSGIPAAIGYAKASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNP 349 (472) T ss_pred HHHHHHHHHHHHH----CC-CCCCEEECCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEE T ss_conf 9999999998735----78-888879817997599999999861994344012205215557688677897514623232 Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 310373341440878873223699999999865987856888 Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG 161 (228) Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v 161 (228) -....+|+||++|||-|-.|+|+...++.|+++|++-+.+.+ T Consensus 350 ~~~~v~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGakeVh~ri 391 (472) T PRK05793 350 LKVNVEGKRVVLIDDSIVRGTTSKRLVESLRRAGAKEVHFRV 391 (472) T ss_pred EEECCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEE T ss_conf 021006986999807705576799999999977999899996 No 68 >PRK08341 amidophosphoribosyltransferase; Provisional Probab=98.27 E-value=3.1e-06 Score=61.53 Aligned_cols=102 Identities=19% Similarity=0.225 Sum_probs=74.5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCCC-----HHHHH-H------H Q ss_conf 8999999999999866421756667899822312578899985158717--8763156420-----11001-3------3 Q gi|254781011|r 55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKKH-----GQKSQ-I------E 120 (228) Q Consensus 55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~h-----G~~~~-i------E 120 (228) -+.|..+...+++. .. .+.|+|+|+|-.|+|.|...|...++|+ .++|..-.+- ....+ + - T Consensus 254 y~~R~~~G~~LA~e----~~-~~~DvVi~VPdSg~~aa~Gya~~~gip~~~glikn~y~gRtFI~P~qR~~~v~~Kl~~~ 328 (442) T PRK08341 254 YHARYRMGVELARE----SP-AEGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPV 328 (442) T ss_pred HHHHHHHHHHHHHH----CC-CCCCEEEECCCCHHHHHHHHHHHCCCCHHHHEEECCCCCCCCCCCCCHHHCEEEEEEEE T ss_conf 99999999998612----89-87898996289749999999986299524300000121554438873002104465010 Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 10373341440878873223699999999865987856888 Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG 161 (228) Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v 161 (228) -...+|++|++|||-|--|+|+...++.|+++||+-+.+.+ T Consensus 329 ~~~i~gK~vvlvDDSIVRGtT~k~iv~~Lr~aGAkeVh~ri 369 (442) T PRK08341 329 REVINGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRI 369 (442) T ss_pred EEEECCCCEEEEECCEEECCCHHHHHHHHHHCCCCEEEEEE T ss_conf 00127981499614341054299999999976998899996 No 69 >COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism] Probab=98.15 E-value=2.8e-05 Score=55.32 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=82.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH-------- Q ss_conf 135798999999999999866421756667899822312578899985158717876315642011001331-------- Q gi|254781011|r 50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEG-------- 121 (228) Q Consensus 50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG-------- 121 (228) .+++..+....+ ..+++.|.++... +.-.++|+=-|++||.+-+...++.|.-+-=-....||.+..=-| T Consensus 10 vLisee~I~~ri-~ela~~I~~~y~g-~~~~vv~iLkGs~~F~~dL~~~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDl 87 (178) T COG0634 10 VLISEEQIKARI-KELAAQITEDYGG-KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDL 87 (178) T ss_pred EEECHHHHHHHH-HHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCEEEECCC T ss_conf 742899999999-9999999776279-96199997466453099999855998416789974047876347716885356 Q ss_pred -CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC Q ss_conf -03733414408788732236999999998659878568888741 Q gi|254781011|r 122 -HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228) Q Consensus 122 -~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228) .-.+|+.||||||++-||.|+....+.+...|++-..++++++. T Consensus 88 d~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK 132 (178) T COG0634 88 DEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDK 132 (178) T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 667789849998521036755999999997569976899998607 No 70 >KOG1448 consensus Probab=98.13 E-value=1.9e-05 Score=56.48 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=106.1 Q ss_pred HHHHHHHHHHHHCCCEEEECCCCEEEECCCC---CCEEEECCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC Q ss_conf 9999999999865976820789867311872---6401426213--5798999999999999866421756667899822 Q gi|254781011|r 11 IIAELVAKMLFEIKAVNFSPENPYHLTSGIV---SPLYIDCRKL--ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGE 85 (228) Q Consensus 11 ~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~---Sp~Y~d~r~~--~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a 85 (228) .+++++|.+|-..||=. ..+++.| ...|||-... ..-|..++. |+.+....+--+|+.|- T Consensus 107 i~aklVanlls~aG~dh-------vIt~DlHa~Q~qgfF~ipVdnly~~p~~l~~--------ir~~~~~~~~~vivSPd 171 (316) T KOG1448 107 ILAKLVANLLSSAGADH-------VITMDLHASQIQGFFDIPVDNLYAEPAVLNY--------IRENIPDSENAVIVSPD 171 (316) T ss_pred HHHHHHHHHHHCCCCCE-------EEEECCCCHHHCCEEECCCHHHCCCHHHHHH--------HHHHCCCCCCEEEECCC T ss_conf 89999985020058965-------9982465342075240202110256388899--------98618874531898788 Q ss_pred CCHHHHHHHHHHHCCCCEEEEECC-CCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE Q ss_conf 312578899985158717876315-6420110--0133103733414408788732236999999998659878568888 Q gi|254781011|r 86 TAGIPFATLLAERLNLPMIYVRKK-SKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL 162 (228) Q Consensus 86 ~~Gip~a~~iA~~l~~p~~~vRK~-~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vi 162 (228) .||.-=++.+|.++++-++.+-|+ .|.|+-. -.++|.+ +|+-+++|||++-|+||+.++.+.|.++|+.-+ .++ T Consensus 172 aGgaKR~~s~ad~l~~~fali~ker~k~~~v~~~m~LVGDv-~gkvaIlVDDm~dt~GTl~~aa~~L~~~GA~kV--~a~ 248 (316) T KOG1448 172 AGGAKRVTSLADRLNLDFALIHKERRKANEVDIRMVLVGDV-KGKVAILVDDMADTCGTLIKAADKLLEHGAKKV--YAI 248 (316) T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEEECC-CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEE--EEE T ss_conf 64556667777752115553301420045542589998536-786899943641136419999999986587459--999 Q ss_pred EECCCCHH-HHHHHHHCCC Q ss_conf 74176324-8999997798 Q gi|254781011|r 163 FFYDIFPE-VPARFRENNI 180 (228) Q Consensus 163 i~~~~~~~-~~~~l~~~gi 180 (228) +.++.|.+ +-+++.+..+ T Consensus 249 ~THgVfs~~a~er~~~s~~ 267 (316) T KOG1448 249 VTHGVFSGPAIERLNESAL 267 (316) T ss_pred ECCEECCCCHHHHHHHCCC T ss_conf 7132226318877344043 No 71 >TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase; InterPro: IPR005904 Phosphoribosyltransferases (PRT) are enzymes that catalyze the synthesis of beta-n-5'-monophosphates from phosphoribosylpyrophosphate (PRPP) and an enzyme specific amine. A number of PRT's are involved in the biosynthesis of purine, pyrimidine, and pyridine nucleotides, or in the salvage of purines and pyrimidines. Purine nucleotides are synthesized both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. This entry presents hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC), which belongs to phosphoribosyltransferase family and is involved in purine salvage.; GO: 0004422 hypoxanthine phosphoribosyltransferase activity, 0006166 purine ribonucleoside salvage, 0005737 cytoplasm. Probab=98.02 E-value=3.8e-05 Score=54.43 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=84.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCC-----EEEEECCCHHHHHHHHHHHCC----------CCE--EEEECCCCCCH Q ss_conf 5798999999999999866421756667-----899822312578899985158----------717--87631564201 Q gi|254781011|r 52 ISFVRARSMIMDLTAKTVLRNIGFESID-----IIAGGETAGIPFATLLAERLN----------LPM--IYVRKKSKKHG 114 (228) Q Consensus 52 ~s~P~~~~~i~~~~~~~i~~~~~~~~~d-----~I~G~a~~Gip~a~~iA~~l~----------~p~--~~vRK~~K~hG 114 (228) ++.-.....+ ..++..|.+.+...++| .++|+=-|+++|-|=++..+. .|+ =|++ .+.|| T Consensus 3 i~~~~i~~r~-~eLa~~I~~~Y~~~~~tt~~~l~~~gvLKGs~~F~aDL~~~i~~~~~~S~RS~~~~~~dFm~--vSSYg 79 (183) T TIGR01203 3 ISEEQIKARI-AELAKQITEDYQGKKPTTDEELVLVGVLKGSFPFFADLIRAIDKLNKYSDRSVVPVQVDFMA--VSSYG 79 (183) T ss_pred CCHHHHHHHH-HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--EEECC T ss_conf 6789999999-99999999873567899897389999725624459999999887422068730114888898--87507 Q ss_pred HHHHHHH----------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE Q ss_conf 1001331----------0373341440878873223699999999865987856888874 Q gi|254781011|r 115 QKSQIEG----------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228) Q Consensus 115 ~~~~iEG----------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228) ++.+=-| .+..|+.||||||++-||-|+....+.|+.-+++..-++++++ T Consensus 80 ~~~~s~g~vki~kDld~di~~gk~VLiVEDIvDtG~Tl~~~~~~L~~r~Pksl~i~~LL~ 139 (183) T TIGR01203 80 NGMSSSGDVKILKDLDEDIKRGKDVLIVEDIVDTGLTLSYLLELLKARKPKSLKIVTLLD 139 (183) T ss_pred CCCEEECCEEEEECCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 983031113798527898403781899961534246799999987138993689999865 No 72 >TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase; InterPro: IPR005946 Synonyms: phosphoribosylpyrophosphate synthetase Phosphoribosyldiphosphate synthetase (PRPPsase, 2.7.6.1 from EC) catalyzes the transfer of an intact diphosphate (PP) group from ATP to ribose-5-phosphate (R-5-P), which results in the formation of AMP and 5-phospho-D-ribosyl--1-diphosphate (PRPP).ATP + D-ribose 5-phosphate = AMP + 5-phospho-alpha-D-ribose 1-diphosphate PRPP is an essential precursor for purine and pyrimidine nucleotides, both in the de novo synthesis and in the salvage pathway as well as in the synthesis of pyridine nucleotide coenzymes. The activity of PRPPsase is highly regulated. Besides competitive inhibition at the substrate binding sites, most PRPPsases are regulated in an allosteric manner, in which ADP generally acts as the most potent inhibitor. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions.; GO: 0000287 magnesium ion binding, 0004749 ribose phosphate diphosphokinase activity, 0009165 nucleotide biosynthetic process. Probab=97.78 E-value=0.00054 Score=46.95 Aligned_cols=154 Identities=17% Similarity=0.312 Sum_probs=98.1 Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEE--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC Q ss_conf 89999999999865976820789867311872640142--6213579899999999999986642175666789982231 Q gi|254781011|r 10 NIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYID--CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETA 87 (228) Q Consensus 10 ~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d--~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~ 87 (228) ..-++.+++++-..|+-+. -...+-+..... ||+ ...+...| .+.+. +..... ..-.+++.|..| T Consensus 104 ~~~~~~~~~~~~~~g~~~~---~~~~~h~~~~~~-~f~~p~~~~~~~~----~~~~~----~~~~~~-~~~~~~~~pd~g 170 (316) T TIGR01251 104 PISAKLVADLLETAGADRV---LTVDLHSPQIQG-FFDVPVDNLYASP----VLAEY----LKEKLP-LDDPVVVSPDKG 170 (316) T ss_pred CHHHHHHHHHHHHCCCCEE---EEEECCCHHHHH-CCCCCCCCCCHHH----HHHHH----HHHHCC-CCCCEEEECCCC T ss_conf 3048899999863274326---885045122210-0234101221157----88888----875327-766468606732 Q ss_pred HHHHHHHHHHHCC-CCEEEEECCCC-CCHH--HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE Q ss_conf 2578899985158-71787631564-2011--001331037334144087887322369999999986598785688887 Q gi|254781011|r 88 GIPFATLLAERLN-LPMIYVRKKSK-KHGQ--KSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 88 Gip~a~~iA~~l~-~p~~~vRK~~K-~hG~--~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228) |+..+..++..++ .|+.++.|... .+.. ...+.|. .+|+.++++||++.|||++..+.+.+++.|++-+-+.+.- T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~k~r~~~~~~~~~~~~~~~-~~g~~~~~~dd~~~~gg~~~~~~~~l~~~g~~~~~~~~~h 249 (316) T TIGR01251 171 GVERAKSVADALGDLPLALIDKRRPSAPNEVEVLPLLGD-VEGKDVVLVDDIIDTGGTLVKAAELLKEKGAKKVYAAATH 249 (316) T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECC-CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 367888999760676423333113676432354310002-3675278860210021358999999863484427876512 Q ss_pred ECCCCH-HHHHHHHHCC Q ss_conf 417632-4899999779 Q gi|254781011|r 164 FYDIFP-EVPARFRENN 179 (228) Q Consensus 164 ~~~~~~-~~~~~l~~~g 179 (228) ..+. .+.+++.+.+ T Consensus 250 --~~~~~~~~~~~~~~~ 264 (316) T TIGR01251 250 --GVFSGPALERLANAG 264 (316) T ss_pred --CHHCCHHHHHHHHCC T ss_conf --200214688865111 No 73 >TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854 Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP .5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process. Probab=97.76 E-value=8.3e-05 Score=52.24 Aligned_cols=138 Identities=16% Similarity=0.206 Sum_probs=87.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH--HHHHCCCCE--EE--EEC-----C-CCCC----H---H Q ss_conf 8999999999999866421756667899822312578899--985158717--87--631-----5-6420----1---1 Q gi|254781011|r 55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATL--LAERLNLPM--IY--VRK-----K-SKKH----G---Q 115 (228) Q Consensus 55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~--iA~~l~~p~--~~--vRK-----~-~K~h----G---~ 115 (228) -..|..+...+++..... .+.|.|++||-.|+|.|.. .|+..++|+ -+ +|= . |-.. + + T Consensus 274 y~aR~~mG~~La~~~~~p---veaDvVvPVPDSG~~aA~G~Afa~~sG~PY~EGl~kNRYVGRTF~~P~Q~~R~~~Vr~k 350 (467) T TIGR01134 274 YYARVRMGEELAEESREP---VEADVVVPVPDSGRPAALGLAFAQESGIPYREGLVKNRYVGRTFMMPTQELRELSVRLK 350 (467) T ss_pred HHHHHHHHHHHHHHHCCC---CCCCEECCCCCCCHHHHHHHHHHHHHCCCCHHCCEECCCCCCCCCCCCHHHHHHHHHHH T ss_conf 778999999999971378---88763328888860589999999870887025556624301013488878987321121 Q ss_pred HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-E-E-E----ECC-CCHHHHHHHH----------H Q ss_conf 001331037334144087887322369999999986598785688-8-8-7----417-6324899999----------7 Q gi|254781011|r 116 KSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI-G-L-F----FYD-IFPEVPARFR----------E 177 (228) Q Consensus 116 ~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~-v-i-i----~~~-~~~~~~~~l~----------~ 177 (228) -+-++. ...|+|||||||=|--|+|....|++||++||+=+.+- + = + .|+ =++...|.+. + T Consensus 351 LnP~r~-~~~GkrVvlVDDSiVRGTTSr~vV~mlR~AGA~EVH~riasPP~~~PC~YGiDmpt~~EL~A~~~~~~e~~~~ 429 (467) T TIGR01134 351 LNPVRS-VVEGKRVVLVDDSIVRGTTSRQVVEMLRDAGAREVHVRIASPPVRYPCYYGIDMPTREELAAARHTVEEIRRE 429 (467) T ss_pred CCCCHH-HHCCCEEEEEECCEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHH T ss_conf 044303-3369758999424120713789999998729838987625888886583335375389873187768988766 Q ss_pred CCCEEEEECCHHHHHHHHH Q ss_conf 7980999632999999999 Q gi|254781011|r 178 NNIKLHYLATWNDILTIAE 196 (228) Q Consensus 178 ~gi~~~sl~t~~~il~~l~ 196 (228) .|....+=+++++|.+-.. T Consensus 430 ~GADsL~YLSlegL~~a~~ 448 (467) T TIGR01134 430 IGADSLAYLSLEGLVAAVG 448 (467) T ss_pred CCCCEEEECCHHHHHHHHH T ss_conf 0775135358899999853 No 74 >KOG0572 consensus Probab=97.70 E-value=9.1e-05 Score=51.96 Aligned_cols=87 Identities=22% Similarity=0.362 Sum_probs=66.0 Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECC--------C----CCCHHH---HHHHHCCCCCCCEEEHHHHH Q ss_conf 756667899822312578899985158717--876315--------6----420110---01331037334144087887 Q gi|254781011|r 74 GFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKK--------S----KKHGQK---SQIEGHLFKGARVLVIEDLV 136 (228) Q Consensus 74 ~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~--------~----K~hG~~---~~iEG~~~~g~~vliVDDvi 136 (228) ...+.|++..+|-.|.+-|-..|.+.++|| +++|.. + ...|-. +.+... -+|+||++|||-| T Consensus 288 ~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~~~-~~GKrvvlVDDSI 366 (474) T KOG0572 288 APVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLRQN-FEGKRVVLVDDSI 366 (474) T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCEECCCCHHHHHHHHHHHCCCCHHH-CCCCEEEEEECCE T ss_conf 874455588579850378888888709960552001231351000764788886476650532344-0785699973654 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 3223699999999865987856888 Q gi|254781011|r 137 TLGNSMFEFVKVIRDSGGIIQDGIG 161 (228) Q Consensus 137 TtG~S~~~~i~~l~~~g~~V~~~~v 161 (228) --|.|+...++.+|++||+-+.+.. T Consensus 367 VRGtTs~~IVkmlreaGAkeVh~ri 391 (474) T KOG0572 367 VRGTTSSPIVKMLREAGAKEVHIRI 391 (474) T ss_pred ECCCCHHHHHHHHHHCCCCEEEEEE T ss_conf 2267538999999875885789882 No 75 >TIGR00201 comF comF family protein; InterPro: IPR005222 Proteins in this family are found in bacterial species which posses systems for natural transformation with exogenous DNA (eg Bacillus subtilis, Haemophilus influenzae), and also species without these systems (eg Escherichia coli). Competence protein F has been shown to be important for the uptake of exogenous DNA in naturally competent bacteria, though the precise role of this protein is not yet known , . GntX is a periplasmic gluconate binding protein thought to be part of a high-affinity gluconate transport system .. Probab=97.59 E-value=2e-05 Score=56.26 Aligned_cols=107 Identities=25% Similarity=0.303 Sum_probs=69.2 Q ss_pred HHHHHHHHHHHHHHH---HCCCCCCCEEEEEC-------CCHHHHHHHHHHHCCCCE-------EEEECCC--CCCHHH- Q ss_conf 999999999998664---21756667899822-------312578899985158717-------8763156--420110- Q gi|254781011|r 57 ARSMIMDLTAKTVLR---NIGFESIDIIAGGE-------TAGIPFATLLAERLNLPM-------IYVRKKS--KKHGQK- 116 (228) Q Consensus 57 ~~~~i~~~~~~~i~~---~~~~~~~d~I~G~a-------~~Gip~a~~iA~~l~~p~-------~~vRK~~--K~hG~~- 116 (228) ..+.+...++..+.. -.....+|.|+.+| -.|.--+-.+|..|+-|. ++.|+.. +-++.. T Consensus 67 I~~~L~~~l~~~~~~~~~T~~L~lp~~iV~vPl~~~R~~~rGFnq~~lL~~~LsR~~~~~n~~~~~~R~~~T~~Q~~~~~ 146 (207) T TIGR00201 67 IARALASLLALTVSKAKRTTQLDLPDQIVPVPLSKKRKWRRGFNQADLLAQLLSRWLDIFNYSNIVSRLKNTKTQKLLKA 146 (207) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHH T ss_conf 99998899999986031000235886044057763532115777789987521530002342003432002034666658 Q ss_pred ----HHHHHC--------CCCCCCEEEHHHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEE Q ss_conf ----013310--------37334144087887322369999999986-598785688887 Q gi|254781011|r 117 ----SQIEGH--------LFKGARVLVIEDLVTLGNSMFEFVKVIRD-SGGIIQDGIGLF 163 (228) Q Consensus 117 ----~~iEG~--------~~~g~~vliVDDviTtG~S~~~~i~~l~~-~g~~V~~~~vii 163 (228) +..|.. -.+|.+|+|||||+|||.|+-++.+.|.+ .||.-+-++++. T Consensus 147 ~~R~~nl~n~f~l~~~~~~~~~~~ivL~DD~~TTGatl~~~~~lLl~k~ga~~V~~~~L~ 206 (207) T TIGR00201 147 KLRKKNLENAFKLKSKKKEFQGRKIVLVDDVVTTGATLAEIAKLLLKKLGAAKVQVWSLA 206 (207) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCC T ss_conf 777777556665420324688755899704510123689999999864570011441206 No 76 >PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional Probab=97.45 E-value=0.00096 Score=45.30 Aligned_cols=112 Identities=22% Similarity=0.239 Sum_probs=77.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC---------CCE-----EEEECCCCCCHH Q ss_conf 135798999999999999866421756667899822312578899985158---------717-----876315642011 Q gi|254781011|r 50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN---------LPM-----IYVRKKSKKHGQ 115 (228) Q Consensus 50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~---------~p~-----~~vRK~~K~hG~ 115 (228) .++.+......+ +.++..|.+...+..+ +++++=-||..|.+-+...++ .|. =|+|- |.|+. T Consensus 43 VlIP~g~I~dRi-e~LA~dI~~dy~g~~i-~llcVLKG~~~F~aDLv~~l~~~~~~s~~~~~~~~~~~dFi~v--sSY~~ 118 (231) T PTZ00149 43 VLIPNGVIKNRI-EKLAFDIKKVYNNEEF-HIICLLKGSRGFFSALLKHLNRIHNYSATESPKHLFGEHYVRV--KSYCN 118 (231) T ss_pred EECCHHHHHHHH-HHHHHHHHHHHCCCCE-EEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEE--EECCC T ss_conf 971679999999-9999999998489817-9999964627889999999876510444456652220005898--50279 Q ss_pred HH-----HHHH---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC Q ss_conf 00-----1331---03733414408788732236999999998659878568888741 Q gi|254781011|r 116 KS-----QIEG---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228) Q Consensus 116 ~~-----~iEG---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228) .. +|-+ ...+|++||||||++-||.|+....+.+++.+..-+.++++++. T Consensus 119 ~~SsG~v~i~~d~~~~l~gk~VLIVEDIvDTG~Tl~~l~~~l~~~~p~svkv~~LL~K 176 (231) T PTZ00149 119 DQSLDRIEIVSEDLSCLKDKHVLIVEDIIDTGKTLLKFCEYLKKFEIKTIAIACLFIK 176 (231) T ss_pred CCCCCCEEEECCCCCCCCCCEEEEEECEECHHHHHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 8766736992266332689849999552771789999999997379996899997856 No 77 >KOG3367 consensus Probab=96.84 E-value=0.006 Score=40.13 Aligned_cols=109 Identities=27% Similarity=0.366 Sum_probs=72.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHH-CC------CCE--EEEECCCCCCHHHH----- Q ss_conf 57989999999999998664217566678998223125788999851-58------717--87631564201100----- Q gi|254781011|r 52 ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAER-LN------LPM--IYVRKKSKKHGQKS----- 117 (228) Q Consensus 52 ~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~-l~------~p~--~~vRK~~K~hG~~~----- 117 (228) +-+.-.+..+ +-++.-|.+..+. ..=+..++..||--|.+.+-.+ .+ +|| =|+|-+ .|+... T Consensus 37 ip~gli~dr~-~rlakDi~~~~g~-~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~k--SY~n~~stg~i 112 (216) T KOG3367 37 IPHGLIRDRV-ERLAKDIMKEIGN-KPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAK--SYCNDQSTGDI 112 (216) T ss_pred CCCCHHHHHH-HHHHHHHHHCCCC-CCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHH--HHCCCCCCCCC T ss_conf 3541135678-7763245541277-851899983241688999999975024577765044554400--21477655785 Q ss_pred HHHH----CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE Q ss_conf 1331----0373341440878873223699999999865987856888874 Q gi|254781011|r 118 QIEG----HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228) Q Consensus 118 ~iEG----~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228) ++.| .-..|++|+||||++-||.++...+..+++.+.+-+.++.+++ T Consensus 113 qiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~ 163 (216) T KOG3367 113 QIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLV 163 (216) T ss_pred EEECCCCHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 166478777735772899974013561078999988860863114322003 No 78 >TIGR01091 upp uracil phosphoribosyltransferase; InterPro: IPR005765 The enzyme uracil phosphoribosyltransferase (UPRT, 2.4.2.9 from EC) catalyzes conversion of uracil to uridine 5'-monophosphate utilizing 5'-phosphoribosyl--1-pyrophosphate (PRPP).UMP + diphosphate = uracil + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0004845 uracil phosphoribosyltransferase activity, 0006223 uracil salvage. Probab=96.47 E-value=0.0033 Score=41.83 Aligned_cols=113 Identities=12% Similarity=0.201 Sum_probs=71.1 Q ss_pred EEEEECCCHHHHHHHHHHHC---CCCE-EEEECCCCCCHHHHHHH-----HCCCCCCCEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 89982231257889998515---8717-87631564201100133-----103733414408788732236999999998 Q gi|254781011|r 80 IIAGGETAGIPFATLLAERL---NLPM-IYVRKKSKKHGQKSQIE-----GHLFKGARVLVIEDLVTLGNSMFEFVKVIR 150 (228) Q Consensus 80 ~I~G~a~~Gip~a~~iA~~l---~~p~-~~vRK~~K~hG~~~~iE-----G~~~~g~~vliVDDviTtG~S~~~~i~~l~ 150 (228) +|+.+=-+|+|+.=.+...+ .+.+ ...|-+.- |.-+-.. -....+..|+|+|=.+.||+|+.++++.|+ T Consensus 75 v~vPILRAGLgm~dG~~~~~P~A~vG~~G~~R~eeT--G~l~~~~Yy~KLP~~~~~~~v~v~DPMLATGgt~~~a~~~lk 152 (213) T TIGR01091 75 VLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEET--GELKPVVYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLK 152 (213) T ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEEEEEECCCC--CCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHH T ss_conf 999610102689999998488771899987736999--852025322005434688869997287343058999999998 Q ss_pred HCCCEEEEEEEEEECCCCHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCCCC Q ss_conf 6598785688887417632489999977--98099963299999999988899 Q gi|254781011|r 151 DSGGIIQDGIGLFFYDIFPEVPARFREN--NIKLHYLATWNDILTIAEKLKIF 201 (228) Q Consensus 151 ~~g~~V~~~~vii~~~~~~~~~~~l~~~--gi~~~sl~t~~~il~~l~~~~~I 201 (228) +.|+.=.-+++|+ - -+.|-+++++. +|++|. +.+++=|+ +.||| T Consensus 153 ~~g~~~I~~~~~v--A-APeG~~~v~~~hpdV~iyt-A~iDe~LN---e~GYI 198 (213) T TIGR01091 153 KRGAKKIKVLSIV--A-APEGIEAVQKAHPDVDIYT-AAIDEKLN---EKGYI 198 (213) T ss_pred HCCCCCEEEEEEE--E-CHHHHHHHHHHCCCCEEEE-EEECCCCC---CCCEE T ss_conf 5399944999998--2-5578999998469946999-97347448---86001 No 79 >PRK00129 upp uracil phosphoribosyltransferase; Reviewed Probab=96.17 E-value=0.096 Score=32.27 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=63.3 Q ss_pred EEECCCHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHH--HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 982231257889998515---871787631564201100133--103733414408788732236999999998659878 Q gi|254781011|r 82 AGGETAGIPFATLLAERL---NLPMIYVRKKSKKHGQKSQIE--GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 (228) Q Consensus 82 ~G~a~~Gip~a~~iA~~l---~~p~~~vRK~~K~hG~~~~iE--G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V 156 (228) +.+--+|.++-..+-..+ ...++-+++..+.+--.-..+ ....++.+|+++|-+++||+|+..+++.|++.|++= T Consensus 74 V~ILRAGl~m~~~~~~~~P~a~vg~Igi~Rde~T~~p~~yy~kLP~~i~~~~VlllDPmlATG~s~~~ai~~L~~~G~~~ 153 (208) T PRK00129 74 VPILRAGLGMVDGVLKLIPSARVGHVGAYRDEETLEPVEYLEKLPSDIDERTVIVVDPMLATGGSMIAAIDLLKKRGAKR 153 (208) T ss_pred EEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHCCCCE T ss_conf 98616516588999986887540058899547777706756328644466879987855643766999999999669973 Q ss_pred EEEEEEEECCCCHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCCCC Q ss_conf 5688887417632489999977--98099963299999999988899 Q gi|254781011|r 157 QDGIGLFFYDIFPEVPARFREN--NIKLHYLATWNDILTIAEKLKIF 201 (228) Q Consensus 157 ~~~~vii~~~~~~~~~~~l~~~--gi~~~sl~t~~~il~~l~~~~~I 201 (228) .-+++++ - -+.|-+++.+. +++++. ..+++-++ +.++| T Consensus 154 I~~v~~i--a-s~~Gi~~v~~~~P~v~I~t-a~iD~~Ln---e~~yI 193 (208) T PRK00129 154 IKVLCLV--A-APEGIKALEEAHPDVEIYT-AAIDEKLN---EHGYI 193 (208) T ss_pred EEEEEEE--E-CHHHHHHHHHHCCCCEEEE-EEECCCCC---CCCCC T ss_conf 8999999--6-4899999998787978999-98377737---78758 No 80 >COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism] Probab=95.17 E-value=0.079 Score=32.80 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=52.2 Q ss_pred CCCCCCEEEHHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCHHHHHHHHH--CCCEEEEECCHHHHHHHHHHCC Q ss_conf 373341440878873223699999999865-9878568888741763248999997--7980999632999999999888 Q gi|254781011|r 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDS-GGIIQDGIGLFFYDIFPEVPARFRE--NNIKLHYLATWNDILTIAEKLK 199 (228) Q Consensus 123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~-g~~V~~~~vii~~~~~~~~~~~l~~--~gi~~~sl~t~~~il~~l~~~~ 199 (228) ..++..|+++|=.++||+|+..+++.|++. |++=.-+++++- -+.|-+++.+ -+++++... +++- |-+.+ T Consensus 121 ~~~~~~viv~DPMLATG~s~i~ai~~L~~~G~~~~I~~v~~vA---apeGi~~v~~~~p~v~I~ta~-iD~~---Lne~g 193 (210) T COG0035 121 DIDERTVIVLDPMLATGGSAIAAIDLLKKRGGPKNIKVVSLVA---APEGIKAVEKAHPDVEIYTAA-IDEG---LNEKG 193 (210) T ss_pred CCCCCEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEEEEEEE---CHHHHHHHHHHCCCCEEEEEE-ECCC---CCCCC T ss_conf 6468859997861412676999999999718975289999996---489999999868997599998-0412---05688 Q ss_pred CC Q ss_conf 99 Q gi|254781011|r 200 IF 201 (228) Q Consensus 200 ~I 201 (228) || T Consensus 194 YI 195 (210) T COG0035 194 YI 195 (210) T ss_pred CC T ss_conf 77 No 81 >TIGR01078 arcA arginine deiminase; InterPro: IPR003876 This is a family of arginine deiminases, 3.5.3.6 from EC. The aligned region corresponds to the C-terminal of the protein. These enzymes catalyse the conversion of arginine + H2O to citrulline + NH3. Also found in this family is the Streptococcus anti tumor glycoprotein .; GO: 0016990 arginine deiminase activity, 0006527 arginine catabolic process. Probab=86.33 E-value=0.37 Score=28.43 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=40.8 Q ss_pred HHHHHH---HHHHHHHHHHHHCCCEEEEE--EEEEECCCCHHHHHHHHHCCCEEEEEC Q ss_conf 887322---36999999998659878568--888741763248999997798099963 Q gi|254781011|r 134 DLVTLG---NSMFEFVKVIRDSGGIIQDG--IGLFFYDIFPEVPARFRENNIKLHYLA 186 (228) Q Consensus 134 DviTtG---~S~~~~i~~l~~~g~~V~~~--~vii~~~~~~~~~~~l~~~gi~~~sl~ 186 (228) +||+|| ++..+|-+-==+=|.+|.++ -|||-|+|..-..++|+++||+++.+- T Consensus 341 ~~I~~GGeGg~~~~AeREQWnDG~N~Lai~PGVVv~Y~RN~~TN~~L~~~GIkVl~i~ 398 (421) T TIGR01078 341 RLIPTGGEGGDSVEAEREQWNDGNNVLAIAPGVVVGYERNVVTNALLEKAGIKVLTIP 398 (421) T ss_pred EEEECCCCCCCCCEECCCCCCCCCCEEEECCCEEEEECCHHHHHHHHHHCCCEEEEEC T ss_conf 4885068899742106521107875588638678951552678899986596899844 No 82 >KOG1503 consensus Probab=82.03 E-value=4.6 Score=21.29 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=62.8 Q ss_pred EEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHC--------------------------------CCCCC Q ss_conf 8998223125788999851587178763156420110013310--------------------------------37334 Q gi|254781011|r 80 IIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH--------------------------------LFKGA 127 (228) Q Consensus 80 ~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~--------------------------------~~~g~ 127 (228) +|+.-.-+.---|...|.+|.+.+..+.-|.|+- +..++.|. ...|. T Consensus 170 vivaksp~~akka~syaerlrlglavihge~k~~-e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppltvvgdvggr 248 (354) T KOG1503 170 VIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDT-ESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLTVVGDVGGR 248 (354) T ss_pred EEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCE T ss_conf 7996282166677769998741314764343353-124435775979743344476545714432569983798226865 Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH-HHHHHHHHCCCEEEEE Q ss_conf 144087887322369999999986598785688887417632-4899999779809996 Q gi|254781011|r 128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP-EVPARFRENNIKLHYL 185 (228) Q Consensus 128 ~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~-~~~~~l~~~gi~~~sl 185 (228) -.++|||++-.-.|-..+.+.|++.|+--. +|+-.++... .+...+++.-|.-.-+ T Consensus 249 iaimvddiiddvqsfvaaae~lkergayki--yv~athgllssdapr~lees~idevvv 305 (354) T KOG1503 249 IAIMVDDIIDDVQSFVAAAEVLKERGAYKI--YVMATHGLLSSDAPRLLEESPIDEVVV 305 (354) T ss_pred EEEEEHHHHHHHHHHHHHHHHHHHCCCEEE--EEEEECCCCCCCCHHHHHCCCCCEEEE T ss_conf 899853357769999999999985585589--998604534566523441188745998 No 83 >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA .. Probab=81.94 E-value=4.3 Score=21.47 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=58.0 Q ss_pred HHHHHHHHHHHHHHCCCEEE--ECCCCEE---EECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 78999999999986597682--0789867---311872640142621357989999999999998664217566678998 Q gi|254781011|r 9 QNIIAELVAKMLFEIKAVNF--SPENPYH---LTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAG 83 (228) Q Consensus 9 ~~~~~~~~a~~L~~~~ai~~--~~~g~F~---L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G 83 (228) +..|-.+++.+|=|.+.+.. +|||..+ |.+|. +| +- ....|.....|+..+|+.+-....-.++=+=+- T Consensus 7 ~~~lG~~i~~~LdD~~vvEIMLNpDG~Lwve~Lg~G~----~~-~G-~t~~~~~a~~Ii~~vA~~l~~~V~~~~PivegE 80 (315) T TIGR02782 7 RRALGPEIAAALDDPKVVEIMLNPDGKLWVERLGEGM----EP-LG-KTVSPADAERIIGLVADYLGTEVDRDKPIVEGE 80 (315) T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCC----CC-CC-CCCCHHHHHHHHHHHHHHHCCEEECCCCEEEEC T ss_conf 9998999999737988389986698701050067973----00-16-611789999999999876446043578626610 Q ss_pred ECCCHHHHHHHHHHH----CCCCEEEEECCCC Q ss_conf 223125788999851----5871787631564 Q gi|254781011|r 84 GETAGIPFATLLAER----LNLPMIYVRKKSK 111 (228) Q Consensus 84 ~a~~Gip~a~~iA~~----l~~p~~~vRK~~K 111 (228) .|.. .+++=++-. ..-|.+-+||++- T Consensus 81 LPld--flGsRFeGl~PPVV~~p~F~IRkkA~ 110 (315) T TIGR02782 81 LPLD--FLGSRFEGLLPPVVEAPSFAIRKKAV 110 (315) T ss_pred CCCC--HHHCCCCCCCCCCCCCCCCHHCCCCC T ss_conf 7511--12011004687755655101110224 No 84 >pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis. Probab=79.17 E-value=1.5 Score=24.51 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHCCCEEEECC-------CCEEEECCCCCCEEE Q ss_conf 999999999986597682078-------986731187264014 Q gi|254781011|r 11 IIAELVAKMLFEIKAVNFSPE-------NPYHLTSGIVSPLYI 46 (228) Q Consensus 11 ~~~~~~a~~L~~~~ai~~~~~-------g~F~L~SG~~Sp~Y~ 46 (228) .++..+ -.|+. .-++++|+ ..|+|+.|-.||.+. T Consensus 30 s~adi~-~~L~~-~~l~~~p~~p~w~~RDRfvLS~GH~s~~lY 70 (333) T pfam00456 30 GMAPIA-EVLFK-RTLRHNPNDPKWPNRDRFVLSNGHASMLLY 70 (333) T ss_pred HHHHHH-HHHHH-HHHCCCCCCCCCCCCCEEEEECCCHHHHHH T ss_conf 999999-99999-982779779899898749996740469999 No 85 >PRK07105 pyridoxamine kinase; Validated Probab=78.08 E-value=6.2 Score=20.46 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=17.8 Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 32999999999888999899999999997299778 Q gi|254781011|r 186 ATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWS 220 (228) Q Consensus 186 ~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~ 220 (228) +++.-++......|.=-++-.+.-.+|...=.+-. T Consensus 222 d~fss~iaa~la~G~~l~~Av~~A~~fv~~aI~~T 256 (284) T PRK07105 222 DIFTSVITGSLLQGLSLPQALDRAVQFIEKGIRAT 256 (284) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 78999999999879999999999999999999988 No 86 >PRK01388 arginine deiminase; Provisional Probab=76.33 E-value=4 Score=21.71 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEE--EEEEECCCCHHHHHHHHHCCCEEEEE Q ss_conf 8732236999999998659878568--88874176324899999779809996 Q gi|254781011|r 135 LVTLGNSMFEFVKVIRDSGGIIQDG--IGLFFYDIFPEVPARFRENNIKLHYL 185 (228) Q Consensus 135 viTtG~S~~~~i~~l~~~g~~V~~~--~vii~~~~~~~~~~~l~~~gi~~~sl 185 (228) +|.+||..+.+..---.-|+++..+ -+|+.|+|.....+.|+++||+++.+ T Consensus 334 lI~~GgD~~~~~rEQw~dg~N~Lai~Pg~Vv~Y~rN~~Tn~~L~~~Gi~Vi~i 386 (410) T PRK01388 334 VIETGGDPIAAEREQWNDGNNTLAIAPGVVVGYDRNTVTNTLLRKAGIEVITI 386 (410) T ss_pred EEECCCCCHHHHHHHHCCCCCEEEECCCEEEEECCCHHHHHHHHHCCCEEEEE T ss_conf 97059961155676523675669966988998568789999999779989997 No 87 >COG2235 ArcA Arginine deiminase [Amino acid transport and metabolism] Probab=73.48 E-value=3.7 Score=21.93 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=39.2 Q ss_pred HHHHHHH-HHHHHHHHHHHCCCEEEEE--EEEEECCCCHHHHHHHHHCCCEEEEECC Q ss_conf 8873223-6999999998659878568--8887417632489999977980999632 Q gi|254781011|r 134 DLVTLGN-SMFEFVKVIRDSGGIIQDG--IGLFFYDIFPEVPARFRENNIKLHYLAT 187 (228) Q Consensus 134 DviTtG~-S~~~~i~~l~~~g~~V~~~--~vii~~~~~~~~~~~l~~~gi~~~sl~t 187 (228) |++.+|+ +...+-+.-.+.|.++..+ -+|+.|||.--..+.+.+.||+++.+-. T Consensus 331 ~~I~~gg~d~i~~~reqw~dg~N~L~i~PG~Vv~ydrN~~tN~~l~e~Gi~Vi~I~~ 387 (409) T COG2235 331 RLIETGGGDVIAAEREQWDDGTNTLTIAPGVVVAYDRNIYTNNLLREAGIKVITIPG 387 (409) T ss_pred EEEEECCCCCCHHHHHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHCCCEEEEEEC T ss_conf 089947986225369875057765874597788335874435668875968999743 No 88 >TIGR00502 nagB glucosamine-6-phosphate isomerase; InterPro: IPR004547 Glucosamine-6-phosphate isomerase (3.5.99.6 from EC) catalyses the conversion of D-glucosamine 6-phosphate and water to D-fructose 6-phosphate in the N-acetylglucosamine utilization pathway. The enzyme was formerly classified as EC 5.3.1.10. This family also includes a closely related pair of proteins from Bacillus subtilis, one of which is uncharacterised but included as a member of the orthologous set.; GO: 0004342 glucosamine-6-phosphate deaminase activity, 0006044 N-acetylglucosamine metabolic process. Probab=71.64 E-value=4.9 Score=21.13 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHHCCCCCCC-E---EEEECCCHHHHHHH Q ss_conf 9999999999866421756667-8---99822312578899 Q gi|254781011|r 58 RSMIMDLTAKTVLRNIGFESID-I---IAGGETAGIPFATL 94 (228) Q Consensus 58 ~~~i~~~~~~~i~~~~~~~~~d-~---I~G~a~~Gip~a~~ 94 (228) ...|+...|..|.+.+.--++| . |.|.|+||-|+++- T Consensus 9 ~E~~sk~AA~~i~~~I~~Fkp~~~~PFVLGLpTGgTP~g~Y 49 (260) T TIGR00502 9 YEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPVGTY 49 (260) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHH T ss_conf 76899999999999864037762367461068888757899 No 89 >pfam06616 BsuBI_PstI_RE BsuBI/PstI restriction endonuclease C-terminus. This family represents the C-terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (EC:3.1.21.4). The enzymes of the BsuBI restriction/modification (R/M) system recognize the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system. Probab=70.76 E-value=9.4 Score=19.29 Aligned_cols=41 Identities=12% Similarity=0.027 Sum_probs=24.2 Q ss_pred CCCCEEEHHHHHHHH----HHHHHHHHHHHHCCCEEEEEEEEEEC Q ss_conf 334144087887322----36999999998659878568888741 Q gi|254781011|r 125 KGARVLVIEDLVTLG----NSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228) Q Consensus 125 ~g~~vliVDDviTtG----~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228) ..+-.++||=|.|.| .-..+.-++.+++-+.++-+-+..+| T Consensus 224 ~~~wL~liEaVtS~GPv~~~R~~eL~~l~~~~~~~lvfVTAF~dR 268 (306) T pfam06616 224 GKKWLVLVEVVASDGPVDGKRHEELAKLFADAPAGLVFVTAFPDR 268 (306) T ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCH T ss_conf 899699999973779989899999999985388886999955898 No 90 >cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction. Probab=66.01 E-value=12 Score=18.66 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=33.4 Q ss_pred HHHHHHHHCCCCEEEEECC-------CCCCHH-----HHHHHHCCC---CCC-CEEEHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 8899985158717876315-------642011-----001331037---334-144087887322369999999986598 Q gi|254781011|r 91 FATLLAERLNLPMIYVRKK-------SKKHGQ-----KSQIEGHLF---KGA-RVLVIEDLVTLGNSMFEFVKVIRDSGG 154 (228) Q Consensus 91 ~a~~iA~~l~~p~~~vRK~-------~K~hG~-----~~~iEG~~~---~g~-~vliVDDviTtG~S~~~~i~~l~~~g~ 154 (228) .+...+.++++|.+.+.-+ .++|-. -+++.|.-+ ++. .|-||=+- .-|+-..+.-..|++.|. T Consensus 121 V~~~~~~~~gipVIpv~~~GF~g~s~~~G~~~a~~al~~~vv~~~~~~~~~~~~iNiige~-ni~gd~~~i~~lL~~mGi 199 (421) T cd01976 121 VARKASKELGIPVVPVRCEGFRGVSQSLGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDY-NIGGDAWASRILLEEMGL 199 (421) T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC-CCCCCHHHHHHHHHHCCC T ss_conf 9999877529988998689857752306889999999998416688778898417997556-676329999999998398 Q ss_pred EEEEEE Q ss_conf 785688 Q gi|254781011|r 155 IIQDGI 160 (228) Q Consensus 155 ~V~~~~ 160 (228) +|..++ T Consensus 200 ~V~~~~ 205 (421) T cd01976 200 RVVAQW 205 (421) T ss_pred CEEEEE T ss_conf 379998 No 91 >PTZ00089 transketolase; Provisional Probab=65.08 E-value=9.6 Score=19.24 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=19.5 Q ss_pred HHHHHHHCCCEEEECC-------CCEEEECCCCCCEE Q ss_conf 9999986597682078-------98673118726401 Q gi|254781011|r 16 VAKMLFEIKAVNFSPE-------NPYHLTSGIVSPLY 45 (228) Q Consensus 16 ~a~~L~~~~ai~~~~~-------g~F~L~SG~~Sp~Y 45 (228) ++-.|+ ..-++|+|+ ..|+|+.|-.||.. T Consensus 38 i~~~L~-~~~l~~~p~~p~w~~RDrfvlS~GH~s~~l 73 (670) T PTZ00089 38 IAHILW-AYVMNYYNEDTKWINRDRFILSNGHASALL 73 (670) T ss_pred HHHHHH-HHHCCCCCCCCCCCCCCEEEECCCCHHHHH T ss_conf 999999-986033988949999986997551277999 No 92 >PRK12753 transketolase; Reviewed Probab=63.95 E-value=13 Score=18.42 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=22.2 Q ss_pred HHHHHHHHHHHHHCCCEEEECC-------CCEEEECCCCCCEEE Q ss_conf 8999999999986597682078-------986731187264014 Q gi|254781011|r 10 NIIAELVAKMLFEIKAVNFSPE-------NPYHLTSGIVSPLYI 46 (228) Q Consensus 10 ~~~~~~~a~~L~~~~ai~~~~~-------g~F~L~SG~~Sp~Y~ 46 (228) ..+++. +-.|+. .-++++|+ ..|+|+.|-.||... T Consensus 30 l~~a~i-~~~L~~-~~~~~~p~~p~~~~rDrfvls~GH~s~~lY 71 (662) T PRK12753 30 MGMADI-AEVLWR-DFLKHNPTNPTWYDRDRFILSNGHASMLLY 71 (662) T ss_pred HHHHHH-HHHHHH-HHHCCCCCCCCCCCCCEEEEECCCCHHHHH T ss_conf 679999-999999-861269889599888869986754029999 No 93 >KOG1017 consensus Probab=63.53 E-value=12 Score=18.49 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=40.5 Q ss_pred CCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECC Q ss_conf 34144087887322369999999986598785688887417632489999977980999632 Q gi|254781011|r 126 GARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLAT 187 (228) Q Consensus 126 g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t 187 (228) -.+|++.=-.++||.++.+|++.|+++|..-..++ +++-=..+.|.+++-.. ++...+++ T Consensus 189 sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~Ii-L~sLF~tP~gak~i~~~-fP~itilt 248 (267) T KOG1017 189 SRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNII-LVSLFITPTGAKNITRK-FPYITILT 248 (267) T ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEE-EEEEECCCHHHHHHHHH-CCEEEEEE T ss_conf 21689984130478138999999998199960089-87743165056788875-97369984 No 94 >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). Probab=61.82 E-value=14 Score=18.17 Aligned_cols=19 Identities=5% Similarity=0.095 Sum_probs=10.2 Q ss_pred HHHHHHHHHHHCCCEEEEE Q ss_conf 6999999998659878568 Q gi|254781011|r 141 SMFEFVKVIRDSGGIIQDG 159 (228) Q Consensus 141 S~~~~i~~l~~~g~~V~~~ 159 (228) .+.++++.++..|++|.|+ T Consensus 252 ~l~~a~~~L~~~g~~VlGv 270 (274) T TIGR03029 252 ELTSLKEHLSGVGVRVVGA 270 (274) T ss_pred HHHHHHHHHHHCCCCEEEE T ss_conf 9999999999779966899 No 95 >PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Probab=61.32 E-value=14 Score=18.11 Aligned_cols=14 Identities=14% Similarity=0.162 Sum_probs=4.5 Q ss_pred HHHHHHHHCCCEEE Q ss_conf 99999986598785 Q gi|254781011|r 144 EFVKVIRDSGGIIQ 157 (228) Q Consensus 144 ~~i~~l~~~g~~V~ 157 (228) ++++.++.+|++|. T Consensus 683 ~a~~~l~~~~~~v~ 696 (726) T PRK09841 683 LSMQRLEQAGVNIK 696 (726) T ss_pred HHHHHHHHCCCCEE T ss_conf 99999997899758 No 96 >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm. Probab=58.97 E-value=8.7 Score=19.50 Aligned_cols=123 Identities=18% Similarity=0.147 Sum_probs=73.4 Q ss_pred HHHHHHHCCCCE---------EEEECCCCCC-HHHHHHH--HCCCC---CCCEEEHHHHHHHHHHHHHHHHHHHHCCC-E Q ss_conf 899985158717---------8763156420-1100133--10373---34144087887322369999999986598-7 Q gi|254781011|r 92 ATLLAERLNLPM---------IYVRKKSKKH-GQKSQIE--GHLFK---GARVLVIEDLVTLGNSMFEFVKVIRDSGG-I 155 (228) Q Consensus 92 a~~iA~~l~~p~---------~~vRK~~K~h-G~~~~iE--G~~~~---g~~vliVDDviTtG~S~~~~i~~l~~~g~-~ 155 (228) |.++|..+++++ --+|+--++| |-+++.| |.... +-.+++|||=.=.=+-+..+++++|+.=- + T Consensus 305 A~ava~~~g~~~~G~~~~~~~~~I~~~L~~F~G~~RRf~~~g~~~~~~n~g~~~~~DDYAHHPtEi~aTl~aAr~~~~~k 384 (491) T TIGR01082 305 AIAVALELGLDFYGKVIVDFLEAIKRALANFQGVKRRFEILGECNGGNNNGTVLLIDDYAHHPTEIKATLAAARQVYPDK 384 (491) T ss_pred HHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC T ss_conf 99888872212368556415899999985068973101201002789875279999658999789999999998752117 Q ss_pred EEEEEEEEECCCCHHHHHHHHHC-----C-CEEEEEC-------------CHHHHHHHHHHCC----CCCHHHHHHHHHH Q ss_conf 85688887417632489999977-----9-8099963-------------2999999999888----9998999999999 Q gi|254781011|r 156 IQDGIGLFFYDIFPEVPARFREN-----N-IKLHYLA-------------TWNDILTIAEKLK----IFNHDVLEEVRCF 212 (228) Q Consensus 156 V~~~~vii~~~~~~~~~~~l~~~-----g-i~~~sl~-------------t~~~il~~l~~~~----~I~~~~~~~I~~~ 212 (228) =..++++|.-=||...+..+++- . +...-|+ +..++...+.+.+ -+-.++...+.++ T Consensus 385 ~~r~v~~FQPHrYsRT~~~~~~F~~~L~~haD~l~~~diY~A~E~~~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~ 464 (491) T TIGR01082 385 NRRIVVVFQPHRYSRTKDLFDDFAKVLSDHADELILLDIYAAGEEPIAGIDGKSLARKITQKKGKEEPYFVPDLAEVVEF 464 (491) T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH T ss_conf 95799997498567899889999999973089999815321136776787789999998625787776104217789999 Q ss_pred HH Q ss_conf 97 Q gi|254781011|r 213 LD 214 (228) Q Consensus 213 l~ 214 (228) +. T Consensus 465 l~ 466 (491) T TIGR01082 465 LA 466 (491) T ss_pred HH T ss_conf 99 No 97 >pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified. Probab=56.92 E-value=17 Score=17.63 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=25.0 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE--EECCCHHH--HHHHHHHHCC Q ss_conf 62135798999999999999866421756667899--82231257--8899985158 Q gi|254781011|r 48 CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIA--GGETAGIP--FATLLAERLN 100 (228) Q Consensus 48 ~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~--G~a~~Gip--~a~~iA~~l~ 100 (228) -+.++.+|.-.-.. -+.|.+ .++|.|. |++.||-. +|+.+ ..++ T Consensus 11 G~piik~P~Dl~~~----qeii~~----~kPd~IIE~G~a~GGS~l~~A~~l-~~~~ 58 (202) T pfam04989 11 GRPIIKLPQDMVAY----QELIWE----LKPDLIIETGIAHGGSALFFASML-ELLG 58 (202) T ss_pred CEECCCCHHHHHHH----HHHHHH----HCCCEEEEECCCCCHHHHHHHHHH-HHHC T ss_conf 85402498999999----999998----599989996167662899999999-9738 No 98 >COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] Probab=56.53 E-value=6.9 Score=20.15 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=70.8 Q ss_pred HHHHHHHCCCCEEEEECCCCCC-HHHHHHH--HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC Q ss_conf 8999851587178763156420-1100133--103733414408788732236999999998659878568888741763 Q gi|254781011|r 92 ATLLAERLNLPMIYVRKKSKKH-GQKSQIE--GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIF 168 (228) Q Consensus 92 a~~iA~~l~~p~~~vRK~~K~h-G~~~~iE--G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~ 168 (228) |.++|..++++.--+++.-++| |.+++.| |.. +| +.++||-.--=+-+..+++++|+.-..=..+++++.--|+ T Consensus 288 aia~a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g~~-~~--~~viDDYaHHPtEI~aTL~aaR~~~~~~~rIvaifQPHry 364 (459) T COG0773 288 AIAVARELGIDPEAIAEALASFQGVKRRFELKGEV-NG--VTVIDDYAHHPTEIKATLAAARQKVPGGKRIVAVFQPHRY 364 (459) T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEEE-CC--EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCH T ss_conf 99999984999899999997388964136886468-87--8998568889799999999999765888669999778731 Q ss_pred HHHHHHHHHC-----CCEEEE-------------E-CCHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 2489999977-----980999-------------6-329999999998889998999999999972 Q gi|254781011|r 169 PEVPARFREN-----NIKLHY-------------L-ATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215 (228) Q Consensus 169 ~~~~~~l~~~-----gi~~~s-------------l-~t~~~il~~l~~~~~I~~~~~~~I~~~l~d 215 (228) ......+++- .....- . .+..+|.+.....++..-.+.+.+.+++.. T Consensus 365 SRt~~~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~ 430 (459) T COG0773 365 SRTRDLLDDFAKALSDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPGHVDVPDLDDLVELLAK 430 (459) T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 758999999998885199999962333578887677539999998513770147888899999996 No 99 >PRK12754 transketolase; Reviewed Probab=55.75 E-value=7.2 Score=20.03 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHHCCCEEEECC-------CCEEEECCCCCCE-EE Q ss_conf 999999999986597682078-------9867311872640-14 Q gi|254781011|r 11 IIAELVAKMLFEIKAVNFSPE-------NPYHLTSGIVSPL-YI 46 (228) Q Consensus 11 ~~~~~~a~~L~~~~ai~~~~~-------g~F~L~SG~~Sp~-Y~ 46 (228) -+++.+. .|+. .-++++|+ ..|+|+.|-.||. |. T Consensus 32 g~~el~~-~L~~-~~~~~~p~~p~~~~rDr~v~s~GH~s~~~Y~ 73 (663) T PRK12754 32 GMADIAE-VLWR-DFLNHNPTNPSWADRDRFVLSNGHGSMLIYS 73 (663) T ss_pred HHHHHHH-HHHH-HHHCCCCCCCCCCCCCEEEEECCCCCHHHHH T ss_conf 7999999-9999-9854797899987898499867530279999 No 100 >cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec Probab=55.36 E-value=18 Score=17.47 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=20.9 Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE Q ss_conf 144087887322369999999986598785688 Q gi|254781011|r 128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI 160 (228) Q Consensus 128 ~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~ 160 (228) +|-|+-...-+++-..+.-+.|++.|.+|..++ T Consensus 154 ~vNlig~~~~~~~d~~ei~~ll~~~Gi~v~~~~ 186 (399) T cd00316 154 SVNLIGGYNLGGGDLRELKRLLEEMGIRVNALF 186 (399) T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC T ss_conf 399995778982009999999998699058976 No 101 >PRK08574 cystathionine gamma-synthase; Provisional Probab=54.70 E-value=18 Score=17.40 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=13.6 Q ss_pred CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 37334144087887322369999999986598785 Q gi|254781011|r 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228) Q Consensus 123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228) +.+|+++|+.+|+- |+| ....+.+.+.|.+|. T Consensus 89 l~~Gd~il~~~~~Y--g~t-~~l~~~l~~~Gi~v~ 120 (384) T PRK08574 89 LKAGDEVVLPMEAY--GTT-LRLLKSLEKFGVRVR 120 (384) T ss_pred CCCCCEEEECCCCC--HHH-HHHHHHHHHHCCEEE T ss_conf 68999899848971--459-999999986085799 No 102 >TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process. Probab=54.67 E-value=18 Score=17.39 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=62.4 Q ss_pred CCEEEECCCCCCEEEECCCCCCCHHHHHHHHH-HHHHHHHHHCCCCCCCEEE--EECCCHHHHHHHHHHHCCCCEEEEEC Q ss_conf 98673118726401426213579899999999-9999866421756667899--82231257889998515871787631 Q gi|254781011|r 32 NPYHLTSGIVSPLYIDCRKLISFVRARSMIMD-LTAKTVLRNIGFESIDIIA--GGETAGIPFATLLAERLNLPMIYVRK 108 (228) Q Consensus 32 g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~-~~~~~i~~~~~~~~~d~I~--G~a~~Gip~a~~iA~~l~~p~~~vRK 108 (228) .=|+++||..+|= |- .+|.. .|.++|..-. .-||+|+ .||.+-+.=|+.+|...+--.+.++- T Consensus 98 nL~vi~sG~vPPN----------Pt--~LL~s~~F~~l~e~~~--~~fD~iiiDTPPig~V~DAai~a~~~d~~~LV~~A 163 (207) T TIGR01007 98 NLDVITSGPVPPN----------PT--ELLQSSNFKTLIETLR--KYFDYIIIDTPPIGTVIDAAIIARAVDASILVTDA 163 (207) T ss_pred CCEEECCCCCCCC----------HH--HHHHHHHHHHHHHHHH--CCCCEEEEEECCCCHHHHHHHHHHHHCCEEEEEEC T ss_conf 8727517887877----------54--7888899999999987--16888999518866678899999872977988722 Q ss_pred CCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE Q ss_conf 5642011001331037334144087887322369999999986598785688887 Q gi|254781011|r 109 KSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 109 ~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228) + +..+. .+..|.+.|++.|.++-|+ |+ T Consensus 164 ~------------~~~k~--------------~v~KAK~~LEq~G~~~LGv--vL 190 (207) T TIGR01007 164 G------------KIKKR--------------EVKKAKEQLEQAGSKFLGV--VL 190 (207) T ss_pred C------------CCCHH--------------HHHHHHHHHHHHCCCEEEE--EE T ss_conf 5------------32646--------------7899999998617841158--88 No 103 >KOG0425 consensus Probab=52.44 E-value=18 Score=17.51 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=42.4 Q ss_pred EEEEECCC-CHHHHHHHHHCCCEEEEECCHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 88874176-32489999977980999632999-99999988899989999999999729977886 Q gi|254781011|r 160 IGLFFYDI-FPEVPARFRENNIKLHYLATWND-ILTIAEKLKIFNHDVLEEVRCFLDNPMQWSKK 222 (228) Q Consensus 160 ~vii~~~~-~~~~~~~l~~~gi~~~sl~t~~~-il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~~ 222 (228) +.|+.-.. .+.+-+..++.=.++|++-|+-- |+..|-+-+..|....+.-+.||+||.++.++ T Consensus 91 ISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~Eykkk 155 (171) T KOG0425 91 ISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKK 155 (171) T ss_pred EEEECCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHH T ss_conf 99615898886667773430577644467688899887189988862447999976688999999 No 104 >TIGR00021 rpiA ribose 5-phosphate isomerase A; InterPro: IPR004788 Ribose 5-phosphate isomerase (5.3.1.6 from EC), also known as phosphoriboisomerase, catalyses the conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt non-oxidative branch. Probab=52.41 E-value=13 Score=18.32 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=36.5 Q ss_pred HHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH Q ss_conf 99999998659768207898673118726401426213579899999999999986642175666789982231257889 Q gi|254781011|r 14 ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFAT 93 (228) Q Consensus 14 ~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~ 93 (228) -+-|.-+++.|.+- | |-||=..-|+ ++.+.+.+++- ...|.|.|++|+= -.+ T Consensus 6 ~~~A~~~V~~Gm~~----G---lGTGST~~~~----------------i~~LG~~v~~G---e~l~~i~gVpTS~--~t~ 57 (236) T TIGR00021 6 AEAAAELVEDGMVV----G---LGTGSTVAYF----------------IEALGERVKQG---EGLDNIVGVPTSK--QTA 57 (236) T ss_pred HHHHHHHHCCCCEE----E---ECCHHHHHHH----------------HHHHHHHHHCC---CCCCCCEEEECHH--HHH T ss_conf 99999860089789----8---2450468999----------------99999874367---7556435884838--999 Q ss_pred HHHHHCCCCEEEE Q ss_conf 9985158717876 Q gi|254781011|r 94 LLAERLNLPMIYV 106 (228) Q Consensus 94 ~iA~~l~~p~~~v 106 (228) ..|..+++|+.=. T Consensus 58 ~lA~~~GIpl~~l 70 (236) T TIGR00021 58 ELARELGIPLSSL 70 (236) T ss_pred HHHHHCCCEEECC T ss_conf 9999829804022 No 105 >KOG3111 consensus Probab=52.09 E-value=20 Score=17.13 Aligned_cols=137 Identities=12% Similarity=0.126 Sum_probs=75.6 Q ss_pred HHHHHHHHHHHHHCCCEEE--EC-CCCEE--E-------ECCCCC---CEEEECCCCCCCHHHHHH-HHH---------- Q ss_conf 8999999999986597682--07-89867--3-------118726---401426213579899999-999---------- Q gi|254781011|r 10 NIIAELVAKMLFEIKAVNF--SP-ENPYH--L-------TSGIVS---PLYIDCRKLISFVRARSM-IMD---------- 63 (228) Q Consensus 10 ~~~~~~~a~~L~~~~ai~~--~~-~g~F~--L-------~SG~~S---p~Y~d~r~~~s~P~~~~~-i~~---------- 63 (228) -+++++.-+ +++.||=-+ .. +|+|. + .|=|++ |.||||..+.+.|+.+-. +++ T Consensus 17 anL~~E~~~-~~~~GadwlHlDVMDg~FVpNiT~G~pvV~slr~~~~~~~ffD~HmMV~~Peq~v~~~a~agas~~tfH~ 95 (224) T KOG3111 17 ANLAAECKK-MLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHY 95 (224) T ss_pred HHHHHHHHH-HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEEEE T ss_conf 789999999-9974987587860147104774336188999985258885236787646988876799864775699986 Q ss_pred -------HHHHHHHHHCCCCCCCEEEEECCC-HHHHHHH--HHHHCCCCEEEEECCCCCCHHHHHHHHCCC-------CC Q ss_conf -------999986642175666789982231-2578899--985158717876315642011001331037-------33 Q gi|254781011|r 64 -------LTAKTVLRNIGFESIDIIAGGETA-GIPFATL--LAERLNLPMIYVRKKSKKHGQKSQIEGHLF-------KG 126 (228) Q Consensus 64 -------~~~~~i~~~~~~~~~d~I~G~a~~-Gip~a~~--iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~-------~g 126 (228) .+++.|++ -.+.+|++.+ |.|.-.+ .+..++.-+++- =.-++|-.+..|.-++ +. T Consensus 96 E~~q~~~~lv~~ir~------~gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMt--VePGFGGQkFme~mm~KV~~lR~ky 167 (224) T KOG3111 96 EATQKPAELVEKIRE------KGMKVGLALKPGTPVEDLEPLAEHVDMVLVMT--VEPGFGGQKFMEDMMPKVEWLREKY 167 (224) T ss_pred EECCCHHHHHHHHHH------CCCEEEEEECCCCCHHHHHHHHHHCCEEEEEE--ECCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 432578999999997------49756687489995899997641025799998--5489750457899989999999868 Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 414408788732236999999998659878568 Q gi|254781011|r 127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228) Q Consensus 127 ~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228) -+.-| =-.||--.+.|...-++||++.-. T Consensus 168 p~l~i----eVDGGv~p~ti~~~a~AGAN~iVa 196 (224) T KOG3111 168 PNLDI----EVDGGVGPSTIDKAAEAGANMIVA 196 (224) T ss_pred CCCEE----EECCCCCCCHHHHHHHCCCCEEEE T ss_conf 98438----854886821377998758887986 No 106 >PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Probab=49.41 E-value=22 Score=16.86 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=26.7 Q ss_pred HHCCCCCCCE-------EEHHHHHHH-----HHHHHHHHHHHHHCCCEEEEEEEEEE Q ss_conf 3103733414-------408788732-----23699999999865987856888874 Q gi|254781011|r 120 EGHLFKGARV-------LVIEDLVTL-----GNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228) Q Consensus 120 EG~~~~g~~v-------liVDDviTt-----G~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228) -|.+.+++.+ .+..|++-+ |.++..+++.|.+.|. |+++.+. T Consensus 241 kGdi~~~~~vLVRVHs~~~t~Dvlgs~~~d~g~qL~~Al~~I~~eG~---GVlVyLr 294 (400) T PRK09311 241 KGDISPGEEVLVRVHSECLTGDVLGSRRCDCGWQLDAAMAAIAEEGR---GVVVYLR 294 (400) T ss_pred ECCCCCCCCEEEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHCCC---EEEEEEC T ss_conf 47867889627999733653344338899973479999999987398---6999946 No 107 >PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Probab=49.34 E-value=22 Score=16.85 Aligned_cols=63 Identities=6% Similarity=-0.077 Sum_probs=42.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC-C----CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCC Q ss_conf 8732236999999998659878568888741-7----6324899999779809996329999999998889 Q gi|254781011|r 135 LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY-D----IFPEVPARFRENNIKLHYLATWNDILTIAEKLKI 200 (228) Q Consensus 135 viTtG~S~~~~i~~l~~~g~~V~~~~vii~~-~----~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~ 200 (228) |+.--|-...++++.+-+|...++++|=+-- | |.+...+--+++|++ +++++||++|.++++. T Consensus 152 vl~R~GHTEasVdLa~LAGl~P~~vicEil~~dG~mar~~~l~~fA~~h~L~---~isI~dLi~Yr~~~~~ 219 (230) T PRK00014 152 VLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLV---ALAIDELAAHLQARGA 219 (230) T ss_pred EEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCC---EEEHHHHHHHHHHHCC T ss_conf 8134770699999999829996089999856998754679999999981997---8989999999998467 No 108 >TIGR01464 hemE uroporphyrinogen decarboxylase; InterPro: IPR006361 This entry represents uroporphyrinogen decarboxylase (HemE), which catalyzes the fifth step in the heme biosynthetic pathway, converting uroporphyrinogen III to coproporphyrinogen III by decarboxylating the four acetate side chains of the substrate . This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. This activity is essential in all organisms, and subnormal activity of URO-D leads to the most common form of porphyria in humans, porphyria cutanea tarda (PCT).; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin biosynthetic process. Probab=48.34 E-value=21 Score=17.07 Aligned_cols=127 Identities=20% Similarity=0.232 Sum_probs=67.6 Q ss_pred HHHHHHH-CCCEEEECCCCEEEEC----CCCCCEEEECCC-CCCCHHHHHHHHHHHHHHHHHHCCC---CCCCE--EE-- Q ss_conf 9999986-5976820789867311----872640142621-3579899999999999986642175---66678--99-- Q gi|254781011|r 16 VAKMLFE-IKAVNFSPENPYHLTS----GIVSPLYIDCRK-LISFVRARSMIMDLTAKTVLRNIGF---ESIDI--IA-- 82 (228) Q Consensus 16 ~a~~L~~-~~ai~~~~~g~F~L~S----G~~Sp~Y~d~r~-~~s~P~~~~~i~~~~~~~i~~~~~~---~~~d~--I~-- 82 (228) +.+.|-+ --++-=....||||+| |.-|.-|-..|+ +-++|+.++.+.+.+.+.+.+.... .++|+ |+ T Consensus 124 ~r~~L~~~~vpLIGFaGaPwTLasYmIEGggSk~~~~~K~f~y~~P~~~~aLl~~Lt~~~~~YL~~Qv~AGA~avQiFDS 203 (351) T TIGR01464 124 LREELDGVEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKFMYEEPEALHALLNKLTDATIEYLSEQVKAGAQAVQIFDS 203 (351) T ss_pred HHHHHCCCCCCEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 99983778864463068605534301027898677999998720858999999999999999999988618848999633 Q ss_pred -EECCCH-------HHHHH----HHHHHC------CCCEEEEECCCCCCHHHHHHHHCCCCC-CCEEEHHHHHHHHHHHH Q ss_conf -822312-------57889----998515------871787631564201100133103733-41440878873223699 Q gi|254781011|r 83 -GGETAG-------IPFAT----LLAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKG-ARVLVIEDLVTLGNSMF 143 (228) Q Consensus 83 -G~a~~G-------ip~a~----~iA~~l------~~p~~~vRK~~K~hG~~~~iEG~~~~g-~~vliVDDviTtG~S~~ 143 (228) +.+... +|... .+-.++ ++|+++-=| |.+.++|.....| --|+=+|=-+ ++. T Consensus 204 Wag~Ls~~df~~fv~py~~~I~~~vk~~~~e~~~~~~P~I~F~~-----G~g~~l~~~~~~g~~DvvglDW~v----~~~ 274 (351) T TIGR01464 204 WAGALSPEDFEEFVLPYLAKIIEEVKKRLPEFVLENVPVILFAK-----GAGHLLEELAETGPADVVGLDWSV----DLK 274 (351) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECC-----CHHHHHHHHHHCCCCCEEEECCCC----CHH T ss_conf 46447987888850889999999998762125789886688528-----778999999706992088605888----989 Q ss_pred HHHHHHHH Q ss_conf 99999986 Q gi|254781011|r 144 EFVKVIRD 151 (228) Q Consensus 144 ~~i~~l~~ 151 (228) ++.+.+.+ T Consensus 275 ~a~~~~~~ 282 (351) T TIGR01464 275 EARKRVGD 282 (351) T ss_pred HHHHHHCC T ss_conf 99997179 No 109 >PRK04042 rpl4lp 50S ribosomal protein L4P; Provisional Probab=47.54 E-value=24 Score=16.67 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=17.0 Q ss_pred EEHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 4087887322369999999986598 Q gi|254781011|r 130 LVIEDLVTLGNSMFEFVKVIRDSGG 154 (228) Q Consensus 130 liVDDviTtG~S~~~~i~~l~~~g~ 154 (228) +||+|-+.+=.-.-++++.|++.|+ T Consensus 141 iVv~d~ie~i~KTK~~~~~L~~lgl 165 (254) T PRK04042 141 LVVVDDFESIKKTKEVRELLKALGL 165 (254) T ss_pred EEEECCCCCHHHHHHHHHHHHHCCC T ss_conf 6872332013769999999998486 No 110 >TIGR03672 rpl4p_arch 50S ribosomal protein L4P. One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. Probab=46.79 E-value=24 Score=16.60 Aligned_cols=58 Identities=10% Similarity=0.003 Sum_probs=32.8 Q ss_pred EEHHHHHHHHHHHHHHHHHHHHCCC--------------------------EEEEEEEEEECCCCHHHHHHHHH-CCCEE Q ss_conf 4087887322369999999986598--------------------------78568888741763248999997-79809 Q gi|254781011|r 130 LVIEDLVTLGNSMFEFVKVIRDSGG--------------------------IIQDGIGLFFYDIFPEVPARFRE-NNIKL 182 (228) Q Consensus 130 liVDDviTtG~S~~~~i~~l~~~g~--------------------------~V~~~~vii~~~~~~~~~~~l~~-~gi~~ 182 (228) +||+|-+.+=...-++++.|+..|+ .-.+.++++.. .+.....+.+ -||++ T Consensus 140 iVv~d~~e~~~KTKe~~~~L~~lgl~~di~r~~~~k~iraGkgkmRgRry~~~k~~LiV~~~--~~~~~ka~RNIpGVdv 217 (251) T TIGR03672 140 IVVVDDFESLKKTKEVRELLEALGVYDDIERAKEGKKIRAGKGKMRGRRYKEPKSVLIVVGD--DSGISKAARNLPGVDV 217 (251) T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCEECCCCCCCCCEEECCCEEEEEECC--CCHHHHHHHCCCCCEE T ss_conf 89824433205289999999985862778988634501157764257300035415999748--7128888607999769 Q ss_pred EEECCHH Q ss_conf 9963299 Q gi|254781011|r 183 HYLATWN 189 (228) Q Consensus 183 ~sl~t~~ 189 (228) .++-.++ T Consensus 218 ~~v~~LN 224 (251) T TIGR03672 218 VTVNNLN 224 (251) T ss_pred EECCCCC T ss_conf 8548776 No 111 >cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site. Probab=45.73 E-value=25 Score=16.50 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=12.8 Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEECC Q ss_conf 667899822312578899985158717876315 Q gi|254781011|r 77 SIDIIAGGETAGIPFATLLAERLNLPMIYVRKK 109 (228) Q Consensus 77 ~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~ 109 (228) +|..+ |++|- |..+ ...|+|.-.+.|- T Consensus 25 Gf~i~---AT~GT--a~~L-~~~Gi~~~~V~Ki 51 (112) T cd00532 25 GFPLF---ATGGT--SRVL-ADAGIPVRAVSKR 51 (112) T ss_pred CCEEE---ECHHH--HHHH-HHCCCEEEEEEEC T ss_conf 99999---88689--9999-9879834898504 No 112 >cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Probab=45.15 E-value=15 Score=17.92 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=33.4 Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 1037334144087887322369999999986598785 Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228) Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228) +.+.+|++++-|++.-.+|-|..+++++|++++-.+. T Consensus 42 ~~L~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~v~ 78 (82) T cd00992 42 GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVT 78 (82) T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE T ss_conf 4899999989899999999989999999984999599 No 113 >PRK07671 cystathionine beta-lyase; Provisional Probab=44.16 E-value=18 Score=17.49 Aligned_cols=14 Identities=7% Similarity=0.195 Sum_probs=6.1 Q ss_pred CCCCCCCEEEHHHH Q ss_conf 03733414408788 Q gi|254781011|r 122 HLFKGARVLVIEDL 135 (228) Q Consensus 122 ~~~~g~~vliVDDv 135 (228) .+.++.+++.+|-. T Consensus 130 ai~~~Tklv~~Esp 143 (377) T PRK07671 130 AIRPNTKAIYVETP 143 (377) T ss_pred HCCCCCEEEEEECC T ss_conf 47888449999789 No 114 >pfam11382 DUF3186 Protein of unknown function (DUF3186). This bacterial family of proteins has no known function. Probab=43.40 E-value=27 Score=16.27 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=7.3 Q ss_pred HHHHHHCCCEEEEEEEEE Q ss_conf 999986598785688887 Q gi|254781011|r 146 VKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 146 i~~l~~~g~~V~~~~vii 163 (228) .+.|+.+|+.|.+.+.+- T Consensus 103 ~~~l~~AGa~V~g~i~lt 120 (307) T pfam11382 103 SEALTQAGATVVGRITLT 120 (307) T ss_pred HHHHHHCCCEEEEEEEEE T ss_conf 999998699146889950 No 115 >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed Probab=43.31 E-value=17 Score=17.68 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=6.7 Q ss_pred HCCCCCCCEEEHHHH Q ss_conf 103733414408788 Q gi|254781011|r 121 GHLFKGARVLVIEDL 135 (228) Q Consensus 121 G~~~~g~~vliVDDv 135 (228) ..+.++.+++.+|-. T Consensus 145 ~ai~~~Tklv~~Esp 159 (397) T PRK07504 145 KAVRPNTKVFFLESP 159 (397) T ss_pred HHCCCCCEEEEEECC T ss_conf 745877539998548 No 116 >PRK13435 response regulator; Provisional Probab=43.03 E-value=23 Score=16.70 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=6.5 Q ss_pred HHHHHHHHHHHCCCCEEEE Q ss_conf 2578899985158717876 Q gi|254781011|r 88 GIPFATLLAERLNLPMIYV 106 (228) Q Consensus 88 Gip~a~~iA~~l~~p~~~v 106 (228) |+-++..+....++|.+|. T Consensus 62 G~e~~r~l~~~~~ipvI~l 80 (141) T PRK13435 62 GVEVARRLSIDGGVEVIFM 80 (141) T ss_pred HHHHHHHHHHCCCCCEEEE T ss_conf 9999999987599838999 No 117 >pfam02233 PNTB NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyses the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli. Probab=43.03 E-value=28 Score=16.23 Aligned_cols=68 Identities=12% Similarity=0.230 Sum_probs=50.0 Q ss_pred CCCCCEEEHH----HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH-HHHCCCEEEEECCHHHHH Q ss_conf 7334144087----88732236999999998659878568888741763248999-997798099963299999 Q gi|254781011|r 124 FKGARVLVIE----DLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR-FRENNIKLHYLATWNDIL 192 (228) Q Consensus 124 ~~g~~vliVD----DviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~-l~~~gi~~~sl~t~~~il 192 (228) ..-++|+||- -|.-.=..+.|..+.|++.|.+|.-.+-=+- +|.++-... |.+.+|++--+..++|+= T Consensus 306 ~~A~~ViIVPGYGmAvAqAQ~~v~el~~~L~~~g~~V~faIHPVA-GRMPGHMNVLLAEA~VpYd~~~emdeiN 378 (464) T pfam02233 306 LNASSVIIVPGYGMAVAQAQHPVADLAKLLEERGVNVRFAIHPVA-GRMPGHMNVLLAEANVPYDIVLEMDEIN 378 (464) T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCCCHHHHHHHCCCCHHHHCCHHHHC T ss_conf 719939997780899998789999999999978986999857668-8887305552231589867754976534 No 118 >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated Probab=42.84 E-value=26 Score=16.38 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=5.8 Q ss_pred CCCCCCCEEEHH Q ss_conf 037334144087 Q gi|254781011|r 122 HLFKGARVLVIE 133 (228) Q Consensus 122 ~~~~g~~vliVD 133 (228) .+.++.+++.+| T Consensus 144 ~i~~~T~lv~~E 155 (426) T PRK05994 144 AITPRTKAIFIE 155 (426) T ss_pred HCCCCCEEEEEE T ss_conf 368875499998 No 119 >pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function. Probab=42.57 E-value=28 Score=16.18 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=4.4 Q ss_pred CCCEEEEECC Q ss_conf 6678998223 Q gi|254781011|r 77 SIDIIAGGET 86 (228) Q Consensus 77 ~~d~I~G~a~ 86 (228) ++|.|+-..+ T Consensus 79 ~~Dliv~~g~ 88 (181) T pfam00551 79 APDLIVLAGY 88 (181) T ss_pred CCCEEEEECH T ss_conf 9999998016 No 120 >pfam01343 Peptidase_S49 Peptidase family S49. Probab=41.59 E-value=29 Score=16.09 Aligned_cols=14 Identities=21% Similarity=0.257 Sum_probs=7.3 Q ss_pred EECCHHHHHHHHHH Q ss_conf 96329999999998 Q gi|254781011|r 184 YLATWNDILTIAEK 197 (228) Q Consensus 184 sl~t~~~il~~l~~ 197 (228) .|-+++|.++.+.+ T Consensus 136 ~ig~~deai~~l~~ 149 (154) T pfam01343 136 ELGTLDDAIARLAE 149 (154) T ss_pred CCCCHHHHHHHHHH T ss_conf 37999999999999 No 121 >PRK00115 hemE uroporphyrinogen decarboxylase; Validated Probab=41.40 E-value=19 Score=17.28 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=18.1 Q ss_pred CCCEEEEC----CCCCCEEEECCC-CCCCHHHHHHHHHHHHHHH Q ss_conf 89867311----872640142621-3579899999999999986 Q gi|254781011|r 31 ENPYHLTS----GIVSPLYIDCRK-LISFVRARSMIMDLTAKTV 69 (228) Q Consensus 31 ~g~F~L~S----G~~Sp~Y~d~r~-~~s~P~~~~~i~~~~~~~i 69 (228) .+||||.| |.-|.-|...|. +..+|+....+.+.+.+.+ T Consensus 146 GaPwTLasYmieG~~sk~~~~~k~~~~~~p~~~~~ll~~lt~~~ 189 (347) T PRK00115 146 GSPWTLATYMVEGGGSKDYAKTKAMMYAEPELLHALLDKLADAT 189 (347) T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 76599999998488984679999987519999999999999999 No 122 >pfam04189 Gcd10p Gcd10p family. eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA. Probab=41.23 E-value=29 Score=16.05 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=32.7 Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCC Q ss_conf 10373341440878873223699999999865987856888874176324899999779 Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENN 179 (228) Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~g 179 (228) +.+..|.|+|++|+ |||=+..|+ ++..|+. |.++.+..+..+-....+.-.| T Consensus 198 anV~~~g~~lv~d~---~~GLv~~A~--~eRmgg~--G~i~~~~~~~~~pnl~~l~~~n 249 (300) T pfam04189 198 ANVRAGGRYLVVDE---TGGLLVAAM--LERMGGE--GKIVQIHEGEHPPNLDLLKYFN 249 (300) T ss_pred CCCCCCCEEEEEEC---CCCHHHHHH--HHHCCCC--CEEEEECCCCCCCCHHHHHHCC T ss_conf 17798986999968---889799999--9973798--3499975798894378998659 No 123 >cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). Probab=40.30 E-value=22 Score=16.87 Aligned_cols=15 Identities=7% Similarity=-0.062 Sum_probs=7.7 Q ss_pred HHHHHHCCCEEEEEC Q ss_conf 999997798099963 Q gi|254781011|r 172 PARFRENNIKLHYLA 186 (228) Q Consensus 172 ~~~l~~~gi~~~sl~ 186 (228) -+.+.+.|+...|+= T Consensus 244 l~~~~~~~~d~isiD 258 (335) T cd00717 244 LEDLAQLGADVVGLD 258 (335) T ss_pred HHHHHHCCCCEEECC T ss_conf 999986398777427 No 124 >pfam02477 Nairo_nucleo Nucleocapsid N protein. The nucleoprotein of the ssRNA negative-strand Nairovirus is an internal part of the virus particle. Probab=40.29 E-value=24 Score=16.68 Aligned_cols=65 Identities=12% Similarity=0.241 Sum_probs=46.8 Q ss_pred HHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998659878568888741763248999997798099963299999999988899989999999999729977886 Q gi|254781011|r 146 VKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSKK 222 (228) Q Consensus 146 i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~~ 222 (228) -.++|.+|+++..++.-. --+=+.||.-. |+..+-++|.+.|.-+.-.+.+++.-.+.|..|+++ T Consensus 295 S~AlRAQGAQIDt~FSsy---------YW~wkAGvtpe---tFptvSQFLFElGk~prG~KKM~KAL~stPlkWGK~ 359 (442) T pfam02477 295 SNALRAQGAQIDTPFSSY---------YWAWKAGVTPE---TFPTVSQFLFELGKSPRGGKKMIKALTSTPLKWGKG 359 (442) T ss_pred HHHHHHCCCCCCCCHHHH---------HHHHHCCCCCC---CCCCHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 058774457437741776---------76775188852---220199999984668873088999985286667688 No 125 >COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Probab=39.76 E-value=28 Score=16.18 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=16.4 Q ss_pred CEEEEECCCHHHHHHHHHHHCCCCEEEEE Q ss_conf 78998223125788999851587178763 Q gi|254781011|r 79 DIIAGGETAGIPFATLLAERLNLPMIYVR 107 (228) Q Consensus 79 d~I~G~a~~Gip~a~~iA~~l~~p~~~vR 107 (228) ..+.|++++= -.+.++.++++|+.... T Consensus 47 ~~i~~V~TS~--~t~~l~~~~GI~v~~l~ 73 (227) T COG0120 47 LDIGGVPTSF--QTEELARELGIPVSSLN 73 (227) T ss_pred CCEEEEECCH--HHHHHHHHCCCEECCCC T ss_conf 6379996979--99999998297643733 No 126 >PRK13978 ribose-5-phosphate isomerase A; Provisional Probab=39.45 E-value=31 Score=15.87 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=43.0 Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEECCCCEE-EECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 989789999999999865976820789867-3118726401426213579899999999999986642175666789982 Q gi|254781011|r 6 FPQQNIIAELVAKMLFEIKAVNFSPENPYH-LTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGG 84 (228) Q Consensus 6 ~~~~~~~~~~~a~~L~~~~ai~~~~~g~F~-L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~ 84 (228) +++.++|++..|+..++. -.+|--. |-||....| .++.+++.+++. ..+ |.++ T Consensus 1 m~~~~~lK~~aa~~A~~~-----V~~gmviGLGTGSTv~~----------------~I~~L~~~~k~~----~l~-i~~V 54 (228) T PRK13978 1 MKDVKALKLMTLNDVLSQ-----INGDMTLGIGTGSTMEL----------------LLPQMAQLIKER----GYN-ITGV 54 (228) T ss_pred CCCHHHHHHHHHHHHHHH-----CCCCCEEEECCHHHHHH----------------HHHHHHHHHHCC----CCC-EEEE T ss_conf 986899999999999965-----89999998555799999----------------999999998607----984-8999 Q ss_pred CCCHHHHHHHHHHHCCCCEEEE Q ss_conf 2312578899985158717876 Q gi|254781011|r 85 ETAGIPFATLLAERLNLPMIYV 106 (228) Q Consensus 85 a~~Gip~a~~iA~~l~~p~~~v 106 (228) +++- -....|.++++|+.-. T Consensus 55 ~tS~--~T~~~a~~~Gi~l~~l 74 (228) T PRK13978 55 CTSN--KIAFLAKELGIKICEI 74 (228) T ss_pred ECCH--HHHHHHHHCCCEEECC T ss_conf 7999--9999999879807645 No 127 >PRK07206 hypothetical protein; Provisional Probab=38.42 E-value=32 Score=15.77 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=22.7 Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCE Q ss_conf 667899822312578899985158717 Q gi|254781011|r 77 SIDIIAGGETAGIPFATLLAERLNLPM 103 (228) Q Consensus 77 ~~d~I~G~a~~Gip~a~~iA~~l~~p~ 103 (228) +++.|.-..-.|+++|..+|..|++|+ T Consensus 70 ~~~aVi~g~E~gV~lAd~La~~LgLp~ 96 (415) T PRK07206 70 GPDAVIAGAESGVELADRLAERLGLCY 96 (415) T ss_pred CCCEEEECCHHHHHHHHHHHHHHCCCC T ss_conf 972999785565999999999868998 No 128 >PRK00830 consensus Probab=38.13 E-value=30 Score=16.04 Aligned_cols=77 Identities=17% Similarity=0.121 Sum_probs=47.2 Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHH-----HHHH-HHCCCEEEE---ECCHHHHHHHHHHCC--------- Q ss_conf 2236999999998659878568888741763248-----9999-977980999---632999999999888--------- Q gi|254781011|r 138 LGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEV-----PARF-RENNIKLHY---LATWNDILTIAEKLK--------- 199 (228) Q Consensus 138 tG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~-----~~~l-~~~gi~~~s---l~t~~~il~~l~~~~--------- 199 (228) |+-+..+.++.+++.|+.-. ++.=+++|....| -+.+ +..++|+.. +-+++|+.+.+...+ T Consensus 171 t~~~~~~~~~~~~~~G~gei-l~tdI~rDGt~~G~d~~l~~~i~~~~~iPvIasGGv~~~~di~~~~~~~~~~~v~~gs~ 249 (273) T PRK00830 171 TGIDAVQWAKKVEELGAGEI-LLTSMDRDGTKDGYDIPITKKISEEVDIPVIASGGVGNPEHIYEGFSDGKADAALAASI 249 (273) T ss_pred CCCCHHHHHHHHHHCCCCEE-EEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHH T ss_conf 78679999999986498868-88787577965688969999998637998899889999999999998389868877005 Q ss_pred -CCCHHHHHHHHHHHHH Q ss_conf -9998999999999972 Q gi|254781011|r 200 -IFNHDVLEEVRCFLDN 215 (228) Q Consensus 200 -~I~~~~~~~I~~~l~d 215 (228) +..+.....+++|+++ T Consensus 250 f~~~~~si~e~k~~L~~ 266 (273) T PRK00830 250 FHFNEYSIREVKEYLRE 266 (273) T ss_pred HHCCCCCHHHHHHHHHH T ss_conf 66699799999999998 No 129 >PRK13745 anaerobic sulfatase-maturase; Provisional Probab=37.30 E-value=34 Score=15.68 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECCCCHH---HHHHHHHCCCEEEEECC Q ss_conf 3699999999865987856888874176324---89999977980999632 Q gi|254781011|r 140 NSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE---VPARFRENNIKLHYLAT 187 (228) Q Consensus 140 ~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~---~~~~l~~~gi~~~sl~t 187 (228) ..+.++++.|++.|.+.....|+.+.. .+. --.-|++.|..+..... T Consensus 153 ~~v~~~i~lL~~~~v~fn~L~vv~~~n-~~~p~~iY~f~k~lg~~~lQFiP 202 (412) T PRK13745 153 VKVMKGINLLKKHGVEWNAMAVVNDFN-ADYPLDFYNFFKELDCHYIQFAP 202 (412) T ss_pred HHHHHHHHHHHHCCCCEEEEEEEECHH-HHCHHHHHHHHHHCCCCEEEEEC T ss_conf 999999999998499646999981115-45889999999975996687631 No 130 >TIGR03161 ribazole_CobZ alpha-ribazole phosphatase CobZ. Sequences in the seed alignment were the experimentally characterized CobZ of the methanogenic archaeon Methanosarcina mazei, and other archaeal proteins found similarly next to or very near to other cobalamin biosynthesis genes. CobZ replaces the alpha-ribazole-phosphate phosphatase (EC 3.1.3.73) called CobC in analogous bacterial pathways for cobalamin biosynthesis under anaerobic conditions. Probab=37.24 E-value=34 Score=15.65 Aligned_cols=15 Identities=0% Similarity=0.155 Sum_probs=9.2 Q ss_pred CCCCCHHHHHHHHHH Q ss_conf 135798999999999 Q gi|254781011|r 50 KLISFVRARSMIMDL 64 (228) Q Consensus 50 ~~~s~P~~~~~i~~~ 64 (228) +.+++|....++.-+ T Consensus 42 ~~L~dpNV~aLl~aA 56 (140) T TIGR03161 42 RYLEDPNVAALLIAA 56 (140) T ss_pred HHHCCHHHHHHHHHH T ss_conf 984583199999999 No 131 >cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. Probab=36.79 E-value=34 Score=15.61 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=25.7 Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 037334144087887322369999999986598785 Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228) Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228) .+++++.+++ +..+|++...++..|++.|.+|. T Consensus 57 ~lp~d~~ivv---~C~~G~rS~~aa~~L~~~G~~v~ 89 (100) T cd01523 57 QLPDDQEVTV---ICAKEGSSQFVAELLAERGYDVD 89 (100) T ss_pred HCCCCCEEEE---EECCCHHHHHHHHHHHHCCCEEE T ss_conf 4789983999---92896569999999998798379 No 132 >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Probab=36.78 E-value=34 Score=15.61 Aligned_cols=86 Identities=8% Similarity=0.013 Sum_probs=53.7 Q ss_pred EEEHHHHHHHHHHHHHH-HHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCCHHH Q ss_conf 44087887322369999-9999865987856888874176324899999779809996329--99999999888999899 Q gi|254781011|r 129 VLVIEDLVTLGNSMFEF-VKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATW--NDILTIAEKLKIFNHDV 205 (228) Q Consensus 129 vliVDDviTtG~S~~~~-i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~--~~il~~l~~~~~I~~~~ 205 (228) |..++|+.++|+=.+.+ .+.+--.....++.+.++. .+....+.+++.||+...+.+- .+..+-. .-.++++ T Consensus 77 va~~~~~~aSggY~iAsaad~I~a~~~s~vGSIGv~~--~~~~~~~ll~k~Gi~~~~~~sg~~K~~~~p~---~~~s~e~ 151 (214) T cd07022 77 VAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVA--SHVDQSKALEKAGLKVTLIFAGAHKVDGNPD---EPLSDEA 151 (214) T ss_pred EEEECCCHHHHHHHHHHHCCCEEECCCCEEEEEEEEE--ECCCHHHHHHHCCCEEEEEECCCCCCCCCCC---CCCCHHH T ss_conf 9998881156899998725705877764687641488--6177688898679547874057633236875---6568899 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999729977 Q gi|254781011|r 206 LEEVRCFLDNPMQW 219 (228) Q Consensus 206 ~~~I~~~l~dP~~W 219 (228) .+.+++++++-++| T Consensus 152 ~~~~q~~ld~~~~~ 165 (214) T cd07022 152 RARLQAEVDALYAM 165 (214) T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 133 >KOG3124 consensus Probab=36.51 E-value=15 Score=17.88 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=42.1 Q ss_pred CCCEEEEECCCHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHH----CCCCC-CCEEEHHHHHHHHHHHHHHHHH Q ss_conf 66789982231257889998515---8717876315642011001331----03733-4144087887322369999999 Q gi|254781011|r 77 SIDIIAGGETAGIPFATLLAERL---NLPMIYVRKKSKKHGQKSQIEG----HLFKG-ARVLVIEDLVTLGNSMFEFVKV 148 (228) Q Consensus 77 ~~d~I~G~a~~Gip~a~~iA~~l---~~p~~~vRK~~K~hG~~~~iEG----~~~~g-~~vliVDDviTtG~S~~~~i~~ 148 (228) .+|.+-|+.-.|..++......| ++-+-+.|..++.-+-..+ .| -+..| .-..+=|||-|-||+.+.+... T Consensus 162 ~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqtl-lGAakMVl~s~qHP~~Lkd~V~SPgG~TI~glh~ 240 (267) T KOG3124 162 CIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQTL-LGAAKMVLASGQHPAQLKDDVCSPGGTTIYGLHA 240 (267) T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHHCCCCCCCCCHHHHHHH T ss_conf 626776136774999999999874445003999899999888998-7189899861689188747888999604789999 Q ss_pred HHHCCCEE Q ss_conf 98659878 Q gi|254781011|r 149 IRDSGGII 156 (228) Q Consensus 149 l~~~g~~V 156 (228) |++-|.+. T Consensus 241 LE~ggfRs 248 (267) T KOG3124 241 LEKGGFRS 248 (267) T ss_pred HHHCCCHH T ss_conf 87388515 No 134 >PRK11070 ssDNA exonuclease RecJ; Provisional Probab=36.42 E-value=35 Score=15.57 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=65.6 Q ss_pred HHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE-ECCCHH Q ss_conf 9999999999865976820789867311872640142621357989999999999998664217566678998-223125 Q gi|254781011|r 11 IIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAG-GETAGI 89 (228) Q Consensus 11 ~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G-~a~~Gi 89 (228) ++...+|+.|..-|.-....=.+ .| +..++|+.+ . -+.+-++-+.+.|.++ ..+ .|+| -..-|+ T Consensus 18 ~i~p~~a~lL~~RGi~~~~~~~~-~l-~~l~~p~~l-----~----dm~~Av~ri~~Ai~~~---ekI-~I~GDYDvDGi 82 (574) T PRK11070 18 ELPPLLRRLYASRGVRSAQELER-SV-KGLLPWQQL-----S----GIEKAVEILYNAFREG---TRI-IVVGDFDADGA 82 (574) T ss_pred CCCHHHHHHHHHCCCCCHHHHHH-HH-HHCCCHHHC-----C----CHHHHHHHHHHHHHCC---CEE-EEEECCCCHHH T ss_conf 67999999999779999999847-77-747992351-----3----9999999999999879---949-99934786067 Q ss_pred HHHHHHH---HHCCCC-EEE-E-ECCCCCCHHHH-HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 7889998---515871-787-6-31564201100-1331037334144087887322369999999986598785 Q gi|254781011|r 90 PFATLLA---ERLNLP-MIY-V-RKKSKKHGQKS-QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228) Q Consensus 90 p~a~~iA---~~l~~p-~~~-v-RK~~K~hG~~~-~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228) .=.+.+- ..++.. ..| + -+...+||.+. .++-....|-+.+| .+-+|.|..+.++.+++.|..|. T Consensus 83 TstaiL~~~l~~~g~~~v~y~IP~R~~eGYGl~~~~i~~~~~~g~~LiI---TvDcGi~a~e~i~~a~~~GidvI 154 (574) T PRK11070 83 TSTALSVLALRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIV---TVDNGISSHAGVAHAKSLGIPVI 154 (574) T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEE---EECCCHHHHHHHHHHHHCCCCEE T ss_conf 9999999999986997169979898767879799999999965999999---95785302999999997799999 No 135 >KOG2311 consensus Probab=36.23 E-value=22 Score=16.88 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=44.9 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHH Q ss_conf 44087887322369999999986598785688887417632489999977980999632999999999888999899999 Q gi|254781011|r 129 VLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEE 208 (228) Q Consensus 129 vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~ 208 (228) =++|||++|-|..- --+.+-. ... +-+. -|.+.|..+|...|.+.+-+.+=.-.-.+-+.+.. -++..+. T Consensus 437 GvLIDDL~t~g~~E--PYRMfTS---RsE--fRLs--lR~DNAD~RLT~lg~~~~~l~s~~rw~~fq~~k~~-l~~~~~~ 506 (679) T KOG2311 437 GVLIDDLTTLGTNE--PYRMFTS---RSE--FRLS--LRPDNADSRLTPLGYKEGGLVSQQRWERFQETKSR-LDEGIKR 506 (679) T ss_pred EEEEHHHHCCCCCC--CHHHHCC---HHH--HEEE--ECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH-HHHHHHH T ss_conf 77722334158765--0665300---334--1566--24776442146100543486467899999988988-8889999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999729977886 Q gi|254781011|r 209 VRCFLDNPMQWSKK 222 (228) Q Consensus 209 I~~~l~dP~~W~~~ 222 (228) +++|..++..|++- T Consensus 507 lk~~k~s~~~w~~l 520 (679) T KOG2311 507 LKEFKLSSQKWKKL 520 (679) T ss_pred HHHHHHHHHHHHHH T ss_conf 88862118888763 No 136 >PRK09191 two-component response regulator; Provisional Probab=35.74 E-value=36 Score=15.50 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=39.0 Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-----------------EEEC---CCCH---HHHHHHHHCCCEEE Q ss_conf 41440878873223699999999865987856888-----------------8741---7632---48999997798099 Q gi|254781011|r 127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG-----------------LFFY---DIFP---EVPARFRENNIKLH 183 (228) Q Consensus 127 ~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v-----------------ii~~---~~~~---~~~~~l~~~gi~~~ 183 (228) .||+||||=.--. ...-..|++.|.+|+|++. +.|. |... .+.+-+++.++++. T Consensus 138 ~rILIVEDE~lIA---mdLe~~l~~lG~~V~GiA~t~~eAl~la~~~~PDlvL~DI~L~d~~sGIdaa~~I~~~~~iPvI 214 (261) T PRK09191 138 TSVLIIEDEPIIA---MDLEQLVESLGHRVVGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261) T ss_pred CCEEEECCCHHHH---HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEE T ss_conf 8879985859999---9999999987996787627899999997425989899953479998799999999982899989 Q ss_pred EECCHHHHH Q ss_conf 963299999 Q gi|254781011|r 184 YLATWNDIL 192 (228) Q Consensus 184 sl~t~~~il 192 (228) -++-+.|-+ T Consensus 215 FiTAyperl 223 (261) T PRK09191 215 FITAFPERL 223 (261) T ss_pred EECCCHHHH T ss_conf 977784653 No 137 >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated Probab=35.45 E-value=23 Score=16.77 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=14.7 Q ss_pred HHHHCCCCCCCEEEHHHHHHHHHH---HHHHHHHHHHCCC Q ss_conf 133103733414408788732236---9999999986598 Q gi|254781011|r 118 QIEGHLFKGARVLVIEDLVTLGNS---MFEFVKVIRDSGG 154 (228) Q Consensus 118 ~iEG~~~~g~~vliVDDviTtG~S---~~~~i~~l~~~g~ 154 (228) .+|..+.++.++|.+|-...--.. +...+++.++.|+ T Consensus 135 ~~~~~i~~~Tklv~~EsP~NPtl~v~DI~~i~~iA~~~g~ 174 (424) T PRK06084 135 ALEALIDERTKAVFCESIGNPAGNIVDLQALADAAHRHGV 174 (424) T ss_pred HHHHHCCCCCEEEEEECCCCCCCEECCHHHHHHHHHHCCC T ss_conf 9997548765189984389998650378999999987499 No 138 >PRK06518 hypothetical protein; Provisional Probab=35.07 E-value=19 Score=17.36 Aligned_cols=13 Identities=23% Similarity=0.792 Sum_probs=11.0 Q ss_pred HHHHHHHHHHCCC Q ss_conf 7299778860988 Q gi|254781011|r 214 DNPMQWSKKNGGI 226 (228) Q Consensus 214 ~dP~~W~~~~g~~ 226 (228) ..|+.|+++||+- T Consensus 174 ~~Pw~wRr~Ng~~ 186 (192) T PRK06518 174 QMPWDWRRDHGSY 186 (192) T ss_pred CCHHHHHHHCCCC T ss_conf 7979999867999 No 139 >TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process. Probab=34.96 E-value=37 Score=15.42 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=38.4 Q ss_pred CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE-CC-CCHHHHHHHHHCCCEEE Q ss_conf 373341440878873223699999999865987856888874-17-63248999997798099 Q gi|254781011|r 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF-YD-IFPEVPARFRENNIKLH 183 (228) Q Consensus 123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~-~~-~~~~~~~~l~~~gi~~~ 183 (228) +.+|+|++| .|+=-|..+++..|+++|+.|+. |+| |. ..+...+.-.+.|+++. T Consensus 328 V~pG~r~v~----~TnNDSAy~~A~dL~~AG~~vvA---i~D~R~~~~p~~~~~Ar~~g~~v~ 383 (1026) T TIGR01372 328 VAPGKRIVV----ATNNDSAYRAAADLAEAGLAVVA---IVDARADVSPELVAEAREAGIEVI 383 (1026) T ss_pred CCCCCEEEE----EECCHHHHHHHHHHHHCCCCEEE---EEEECCCCCHHHHHHHHHCCCEEE T ss_conf 054870589----82173589999999964895069---996178875247999987598598 No 140 >PRK05802 hypothetical protein; Provisional Probab=34.57 E-value=37 Score=15.38 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=72.8 Q ss_pred CCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 98673118726401426213579899999999999986642175666789982231257889998515871787631564 Q gi|254781011|r 32 NPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK 111 (228) Q Consensus 32 g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K 111 (228) |.|+.-.+..|+.|||.-.-+.+.. ..+ ++ .-+.++..|+--........+- -+++|-. - T Consensus 99 GSfVFlR~~~~~~yfd~PISIM~~d------------~~~-----~i-i~vaiei~G~KTk~i~~~~~~~-~i~iRGP-y 158 (328) T PRK05802 99 GSFVFLRNKNSNPFFDVPISIMESD------------TEE-----NI-IKVAIEVRGIKTKKILNLNKGE-EILIRGP-Y 158 (328) T ss_pred CCEEEEECCCCCCCCCCCEEEEECC------------CCC-----CE-EEEEEEEECCCCHHHHHCCCCC-EEEEECC-C T ss_conf 7589985798887524654887615------------556-----75-9999997123403033124687-6999677-4 Q ss_pred C---CHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH---HHHHHHHHCCCEEEEEEEEEECCCCH--HHHHHHHHCCCEEE Q ss_conf 2---0110013310373341440878873223699---99999986598785688887417632--48999997798099 Q gi|254781011|r 112 K---HGQKSQIEGHLFKGARVLVIEDLVTLGNSMF---EFVKVIRDSGGIIQDGIGLFFYDIFP--EVPARFRENNIKLH 183 (228) Q Consensus 112 ~---hG~~~~iEG~~~~g~~vliVDDviTtG~S~~---~~i~~l~~~g~~V~~~~vii~~~~~~--~~~~~l~~~gi~~~ 183 (228) = +|.+ .|. -.++.++||| ..|=... -.++.|-..|-+| .+++|.+.++ -..+.|+++++++. T Consensus 159 wNGifGlk-~I~--~~kn~k~LvI----aRGIgqAP~vpVikkL~~n~NkV---~vIid~~~~~~~fI~eyl~~~~~~~i 228 (328) T PRK05802 159 WNGVFGLK-NIK--STKNGKSLVI----ARGIGQAPAVPVIKKLYSNGNKV---IVILDKGPFENNFIKEYLEEYNIEVI 228 (328) T ss_pred CCCCCCHH-HHH--HCCCCEEEEE----ECCCCCCCCHHHHHHHHHCCCEE---EEEECCCCCCCHHHHHHHHHCCCEEE T ss_conf 24403705-675--0579739999----35623255559999998689979---99985885531659999985783699 Q ss_pred EECCHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 96329999999998889998999999999972 Q gi|254781011|r 184 YLATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215 (228) Q Consensus 184 sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~d 215 (228) ..-.++ .+.++++.++.+++++++ T Consensus 229 ~~~~l~--------~g~lsee~K~~i~~~ik~ 252 (328) T PRK05802 229 ECNLLD--------KGELSEEGKDILKEIIKK 252 (328) T ss_pred EECCCC--------CCCCCHHHHHHHHHHHHH T ss_conf 831422--------344578899999999973 No 141 >TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process. Probab=34.16 E-value=35 Score=15.58 Aligned_cols=122 Identities=22% Similarity=0.252 Sum_probs=62.1 Q ss_pred EEEEECCCHH-HHHHHHHHHCCCCEE---EEECCCCCCH----HHHHHHH-------------CCCCCCCEEEHHHHHHH Q ss_conf 8998223125-788999851587178---7631564201----1001331-------------03733414408788732 Q gi|254781011|r 80 IIAGGETAGI-PFATLLAERLNLPMI---YVRKKSKKHG----QKSQIEG-------------HLFKGARVLVIEDLVTL 138 (228) Q Consensus 80 ~I~G~a~~Gi-p~a~~iA~~l~~p~~---~vRK~~K~hG----~~~~iEG-------------~~~~g~~vliVDDviTt 138 (228) +|.|||-.|- .+|..+|..|+++++ -+|-=++.-| +.++.|- +.-.+++=||||=-++. T Consensus 4 ~ISGpPGSGktTvA~~lA~~Lsl~~iSaG~iRelA~~~Gldl~E~~~aee~~eIDk~iD~~~~E~A~~~~nvvlEsrlag 83 (173) T TIGR02173 4 TISGPPGSGKTTVAKILAEKLSLKLISAGDIRELAEKMGLDLAESKYAEENPEIDKKIDRRIREIAEKEKNVVLESRLAG 83 (173) T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEECCCHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHH T ss_conf 87358968647899999986398312020078898642988777344305863116753788554304896688520543 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEC-------------------------CCCHHHHHHHHH-CCCEEEEECCHHHHH Q ss_conf 236999999998659878568888741-------------------------763248999997-798099963299999 Q gi|254781011|r 139 GNSMFEFVKVIRDSGGIIQDGIGLFFY-------------------------DIFPEVPARFRE-NNIKLHYLATWNDIL 192 (228) Q Consensus 139 G~S~~~~i~~l~~~g~~V~~~~vii~~-------------------------~~~~~~~~~l~~-~gi~~~sl~t~~~il 192 (228) = +...+++..++.+-+.= .|++.-.+|+.+ |||.+.-|.=|+= T Consensus 84 W---------~~~~nG~yaD~~iyL~A~levRA~RIA~Re~k~~~~A~~~~~~REe~e~rRy~~iYgIDidDlsiYDL-- 152 (173) T TIGR02173 84 W---------ILKKNGEYADVKIYLKAPLEVRARRIAKRENKDLTVALKEIIEREESEKRRYKEIYGIDIDDLSIYDL-- 152 (173) T ss_pred H---------HCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE-- T ss_conf 3---------11578896756788608833324332113688989999999998876223456652502343222200-- Q ss_pred HHHHHCCCCCHHHH-HHHHHHHH Q ss_conf 99998889998999-99999997 Q gi|254781011|r 193 TIAEKLKIFNHDVL-EEVRCFLD 214 (228) Q Consensus 193 ~~l~~~~~I~~~~~-~~I~~~l~ 214 (228) ..++..++.+.. +.|..+++ T Consensus 153 --vinT~~~~~~~v~~iv~~ald 173 (173) T TIGR02173 153 --VINTSNLDVDEVSDIVLDALD 173 (173) T ss_pred --EEECCCCCHHHHHHHHHHHCC T ss_conf --334476681269999998609 No 142 >PRK09019 translation initiation factor Sui1; Validated Probab=34.04 E-value=38 Score=15.33 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=49.6 Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCCCHHHHHHHHHC Q ss_conf 17876315642011001331037334144087887322369999999986---598785688887417632489999977 Q gi|254781011|r 102 PMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRD---SGGIIQDGIGLFFYDIFPEVPARFREN 178 (228) Q Consensus 102 p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~---~g~~V~~~~vii~~~~~~~~~~~l~~~ 178 (228) ..+.+|.+.|+. .|+.|.+|+-+--....+....+.|+. .|+.|.+-...+.=|..+...+.|++. T Consensus 31 g~vri~~e~kGR-----------~GK~VTvI~G~~~~~~~lk~Lak~LK~~cG~GGsvK~~~IeiQGD~R~kv~~~L~~~ 99 (108) T PRK09019 31 GIVRIQRQTSGR-----------KGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAK 99 (108) T ss_pred CEEEEEEECCCC-----------CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEECCCEEEECCCHHHHHHHHHHHC T ss_conf 249999861799-----------997189997987999999999999999845785071899998172699999999987 Q ss_pred CCEEE Q ss_conf 98099 Q gi|254781011|r 179 NIKLH 183 (228) Q Consensus 179 gi~~~ 183 (228) |+++- T Consensus 100 G~~vK 104 (108) T PRK09019 100 GMKVK 104 (108) T ss_pred CCEEE T ss_conf 99056 No 143 >TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process. Probab=33.81 E-value=38 Score=15.30 Aligned_cols=162 Identities=15% Similarity=0.211 Sum_probs=91.9 Q ss_pred CCCEEEECCCCEE---EECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCEEEEECCCHHHHHHHHHH Q ss_conf 5976820789867---3118726401426213579899999999999986642175--6667899822312578899985 Q gi|254781011|r 23 IKAVNFSPENPYH---LTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGF--ESIDIIAGGETAGIPFATLLAE 97 (228) Q Consensus 23 ~~ai~~~~~g~F~---L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~--~~~d~I~G~a~~Gip~a~~iA~ 97 (228) -|=|.+.|+|+|+ .--|+ ...-+.+-+.+..-.+.+.+.|.+.... .++|+|+ +|-+|=|-= | T Consensus 70 mNPvLLKPkgdf~SQviv~G~-------a~g~~~~~~Y~~~~~d~~~~~i~eSle~L~~~Yd~vv-~EGAGS~AE--I-- 137 (502) T TIGR00313 70 MNPVLLKPKGDFTSQVIVHGR-------AVGDMNAQEYYKNKVDFLLKAIKESLEILAEEYDLVV-IEGAGSPAE--I-- 137 (502) T ss_pred CCCCCCCCCCCCEEEEEEEEE-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-EECCCCCCC--C-- T ss_conf 487101678884667898411-------2466761567779999999999999987520288899-826887100--0-- Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHH--HHHHHHHHHHHHC-CCEEEEEEEEEEC-----CCCH Q ss_conf 158717876315642011001331037334144087887322--3699999999865-9878568888741-----7632 Q gi|254781011|r 98 RLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLG--NSMFEFVKVIRDS-GGIIQDGIGLFFY-----DIFP 169 (228) Q Consensus 98 ~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG--~S~~~~i~~l~~~-g~~V~~~~vii~~-----~~~~ 169 (228) |+ +-| -..+.-.-.+ -...++||-|+=-=| -|+.-++.+|.+. --.|.|+ |+++ |..+ T Consensus 138 --NL---~~r------DLaN~~iA~~-~~A~~iLvADIDRGGVFAsi~GTl~LL~~~~r~liKG~--vINkfRG~~~vL~ 203 (502) T TIGR00313 138 --NL---KER------DLANMRIAEL-ADADVILVADIDRGGVFASIYGTLKLLPEEERKLIKGI--VINKFRGNVDVLE 203 (502) T ss_pred --CC---CCC------CCHHHHHHHH-CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEECEE--EECCCCCCHHHHH T ss_conf --53---315------7224789864-39767999750777432433746661883457500306--8835468724434 Q ss_pred HHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 48999997-7980999632999999999888999899999999997299 Q gi|254781011|r 170 EVPARFRE-NNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPM 217 (228) Q Consensus 170 ~~~~~l~~-~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~ 217 (228) .|-+++++ -||++.=++.|.|= ..++++|-..|.+|..-|. T Consensus 204 ~GI~~lEelTGiPVLGv~PY~~~-------l~lp~EDS~~l~~~~~~G~ 245 (502) T TIGR00313 204 SGIEKLEELTGIPVLGVLPYDEN-------LKLPEEDSLDLEERKARGS 245 (502) T ss_pred HHHHHHHHHCCCCEEEEEECCCC-------CCCCHHHHHHHHHHCCCCC T ss_conf 45689988548423446501257-------7675131056886157899 No 144 >TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase; InterPro: IPR006366 This domain is found in a family of sequences that represent enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulphite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.; GO: 0008168 methyltransferase activity, 0006779 porphyrin biosynthetic process. Probab=33.79 E-value=35 Score=15.56 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=69.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE Q ss_conf 89897899999999998659768207898673118726401426213579899999999999986642175666789982 Q gi|254781011|r 5 YFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGG 84 (228) Q Consensus 5 ~~~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~ 84 (228) +...+++|-+++.+.-.+-+-|- .||+| ||-.+-.-.+.+..+....+ .|++|=|+ T Consensus 60 h~~~Q~~IN~lLV~~A~~G~~VV-------RLKGG--------------DP~vFGRgGEE~~~L~~~GI---~~EvvPGv 115 (242) T TIGR01469 60 HSVKQEEINRLLVELAREGKKVV-------RLKGG--------------DPFVFGRGGEEAEALAEAGI---PFEVVPGV 115 (242) T ss_pred CCCCHHHHHHHHHHHHHCCCEEE-------EECCC--------------CCCEECCHHHHHHHHHHCCC---CEEEECCC T ss_conf 68897899999999985398589-------97489--------------98437856899999996689---79873881 Q ss_pred CCCHHHHHHHHHHHCCCCEE---------EEECCCCC-CHH-HH-HHH-HCCCC-CCCEEEHHHHHHHH-HHHHHHHHHH Q ss_conf 23125788999851587178---------76315642-011-00-133-10373-34144087887322-3699999999 Q gi|254781011|r 85 ETAGIPFATLLAERLNLPMI---------YVRKKSKK-HGQ-KS-QIE-GHLFK-GARVLVIEDLVTLG-NSMFEFVKVI 149 (228) Q Consensus 85 a~~Gip~a~~iA~~l~~p~~---------~vRK~~K~-hG~-~~-~iE-G~~~~-g~~vliVDDviTtG-~S~~~~i~~l 149 (228) .. |.+.+...++|+- |+= -.+. .+. .. .+. -.+.. +..+++- =| ..+-+.++.| T Consensus 116 Ts-----A~Aa~a~aGiPlThR~~~~s~~f~T-Gh~~~~~~~~~~~~~W~~lA~~~~Tlv~y-----MG~~~l~~I~~~L 184 (242) T TIGR01469 116 TS-----AIAAAAYAGIPLTHRGLARSVTFVT-GHEAKEGEEALNEVDWEALAKGGGTLVIY-----MGVANLAEIAKEL 184 (242) T ss_pred CH-----HHHHHHHCCCCCCCCCCCCCEEEEE-EEEECCCCCCCCCCCHHHCCCCCCCEEEE-----HHHHHHHHHHHHH T ss_conf 16-----7789985589954130217316885-35406888776757866715767726886-----2178899999999 Q ss_pred HHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHC Q ss_conf 8659878568888741763248999997798099963299999999988 Q gi|254781011|r 150 RDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKL 198 (228) Q Consensus 150 ~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~ 198 (228) -++|-.-.-=++++...- ... .-.-..|+.++.+.+.+. T Consensus 185 i~~G~~~~tPvA~v~~At-~~~---------Q~~~~~tL~~~~~~~~~~ 223 (242) T TIGR01469 185 IEAGRDPDTPVAVVEWAT-TPN---------QRVVIGTLGDLAEKAAEE 223 (242) T ss_pred HHCCCCCCCCEEEEECCC-CCC---------CEEEEEEHHHHHHHHHHH T ss_conf 963889678274443288-512---------025565388899999972 No 145 >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions. Probab=33.70 E-value=38 Score=15.29 Aligned_cols=61 Identities=18% Similarity=0.089 Sum_probs=37.8 Q ss_pred CCEEEHHHHHHHHHH-------HHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHH Q ss_conf 414408788732236-------9999999986598785688887417632489999977980999632999999 Q gi|254781011|r 127 ARVLVIEDLVTLGNS-------MFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILT 193 (228) Q Consensus 127 ~~vliVDDviTtG~S-------~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~ 193 (228) .|++| |+|.|.| +..+.+.++.+|.+|-.+.+ =+.+ ..--+.+...-=.++.+-++++|+. T Consensus 110 ~kvlv---liTDG~S~~~~~~~~~~aa~~lr~~GV~ifaVGV-G~~~--~~eL~~IAs~p~~~~~~~~f~~L~~ 177 (186) T cd01480 110 NKFLL---VITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAV-GSQN--EEPLSRIACDGKSALYRENFAELLW 177 (186) T ss_pred CEEEE---EEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-CCCC--HHHHHHHHCCCCCEEEECCHHHHHC T ss_conf 53899---9845876667406699999999987989999994-7488--7999998589973897368998701 No 146 >smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues. Probab=33.52 E-value=35 Score=15.54 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=18.6 Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 144087887322369999999986598785 Q gi|254781011|r 128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228) Q Consensus 128 ~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228) ||++|||-.+...++. ..+++.|.+|. T Consensus 2 kVLivdD~~~~~~~l~---~~l~~~g~~v~ 28 (55) T smart00448 2 RILVVDDDPLLRELLK---ALLEREGYEVD 28 (55) T ss_pred EEEEEECCHHHHHHHH---HHHHHCCCEEE T ss_conf 8999937999999999---99997899999 No 147 >TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141 This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.. Probab=33.21 E-value=25 Score=16.48 Aligned_cols=122 Identities=17% Similarity=0.200 Sum_probs=63.0 Q ss_pred CCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH-------HHHHHH-- Q ss_conf 97682078986731187264014262135798999999999999866421756667899822312-------578899-- Q gi|254781011|r 24 KAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAG-------IPFATL-- 94 (228) Q Consensus 24 ~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~G-------ip~a~~-- 94 (228) |||| .| =||| |=+| |.-++..-......|++=+.-++.++ .|...|..| |=+||. T Consensus 352 GAIR----DP---LSGR-SYVY-QAmRvtGaadpt~~v~ETl~GKLPQ~-------ki~~tAA~GYSSYGNQIGLAT~~V 415 (1279) T TIGR01857 352 GAIR----DP---LSGR-SYVY-QAMRVTGAADPTVPVSETLKGKLPQR-------KITTTAAHGYSSYGNQIGLATGQV 415 (1279) T ss_pred CCCC----CC---CCCH-HHEE-EEEEEECCCCCCCCHHHHCCCCCCCH-------HHHHHHCCCCCHHHHHHHHHHCCE T ss_conf 5413----77---7630-0301-10011057788554010115887411-------332201132101222465531613 Q ss_pred --------HHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHH-------HHHHHHHHHHHHHHHCCCEEEEE Q ss_conf --------985158717876315642011001331037334144087887-------32236999999998659878568 Q gi|254781011|r 95 --------LAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLV-------TLGNSMFEFVKVIRDSGGIIQDG 159 (228) Q Consensus 95 --------iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDvi-------TtG~S~~~~i~~l~~~g~~V~~~ 159 (228) +|-|+.+.-+. =--||+|--+. .=.+|+.|+|+===. .||+|.....+.|+.+||+|.-- T Consensus 416 ~EiYHpGY~AKRMEvGAVv-AAtP~~nV~R~----~P~~GD~iILLGGkTGRDGiGGATGSSK~h~~eS~~~~GAEVQKG 490 (1279) T TIGR01857 416 SEIYHPGYVAKRMEVGAVV-AATPKENVVRE----KPEPGDVIILLGGKTGRDGIGGATGSSKEHTVESLELCGAEVQKG 490 (1279) T ss_pred EEEECCCCEEEEEEECCEE-EECCCCCCEEC----CCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECC T ss_conf 4776578501245300144-50588873526----789887899817852777556776885666368686468603038 Q ss_pred EEEEECC Q ss_conf 8887417 Q gi|254781011|r 160 IGLFFYD 166 (228) Q Consensus 160 ~vii~~~ 166 (228) =+...|. T Consensus 491 NAp~ERK 497 (1279) T TIGR01857 491 NAPEERK 497 (1279) T ss_pred CCCCCCC T ss_conf 8743111 No 148 >cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum. Probab=33.13 E-value=39 Score=15.23 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=14.7 Q ss_pred CCCCEEEEECCCHHHHHHHHHH Q ss_conf 6667899822312578899985 Q gi|254781011|r 76 ESIDIIAGGETAGIPFATLLAE 97 (228) Q Consensus 76 ~~~d~I~G~a~~Gip~a~~iA~ 97 (228) ..||.|+|..+||| +|..+|. T Consensus 33 ~~fDliaGTStGgi-iA~~la~ 53 (288) T cd07213 33 DQIDLFAGTSAGSL-IALGLAL 53 (288) T ss_pred HHCCEEEECCHHHH-HHHHHHC T ss_conf 44377897389899-9999956 No 149 >pfam00595 PDZ PDZ domain (Also known as DHR or GLGF). PDZ domains are found in diverse signaling proteins. Probab=32.68 E-value=31 Score=15.93 Aligned_cols=38 Identities=32% Similarity=0.292 Sum_probs=33.8 Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 10373341440878873223699999999865987856 Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228) Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228) +.+.+|++++=|++.-..+-+..++++.++.++-.|.- T Consensus 40 ~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L 77 (80) T pfam00595 40 GGLQVGDRILSINGQDLENMSHDEAVLALKGSGGEVTL 77 (80) T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE T ss_conf 87999999999999998999899999999749992999 No 150 >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad Probab=32.36 E-value=29 Score=16.13 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=46.6 Q ss_pred CCCEE-EHHHHHHHHHHHHHHH-HHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECC--HHHHHHHHHHCCCC Q ss_conf 34144-0878873223699999-99986598785688887417632489999977980999632--99999999988899 Q gi|254781011|r 126 GARVL-VIEDLVTLGNSMFEFV-KVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLAT--WNDILTIAEKLKIF 201 (228) Q Consensus 126 g~~vl-iVDDviTtG~S~~~~i-~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t--~~~il~~l~~~~~I 201 (228) |+.|+ .++|+.++|+-.+.+. +.+--...-.+|.+.++. ....-.+.+++.||+.+.+.. +.+..+.. ... T Consensus 66 ~KpV~a~~~~~aaSg~Y~lAs~ad~I~a~p~s~vGSIGv~~--~~~~~~~~l~k~Gi~~~~~~~G~~K~~~~~~---~~~ 140 (208) T cd07023 66 KKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIG--QGPNLEELLDKLGIERDTIKSGPGKDKGSPD---RPL 140 (208) T ss_pred CCEEEEEECCHHHCHHHHHHHCCCEEEECCCCEECCCCEEE--ECCCHHHHHHHCCCCEEEEECCCCCCCCCCC---CCC T ss_conf 98599997771113345655128779977876333200366--3268899999769706999525623345777---789 Q ss_pred CHHHHHHHHHHHHHHHHH Q ss_conf 989999999999729977 Q gi|254781011|r 202 NHDVLEEVRCFLDNPMQW 219 (228) Q Consensus 202 ~~~~~~~I~~~l~dP~~W 219 (228) ++++.+.+++++++-+++ T Consensus 141 s~e~~~~~~~~ld~~~~~ 158 (208) T cd07023 141 TEEERAILQALVDDIYDQ 158 (208) T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999 No 151 >TIGR00432 arcsn_tRNA_tgt archaeosine tRNA-ribosyltransferase; InterPro: IPR004804 The archaeosine tRNA-guanine transglycosylase (tgt) differs from the tgt of Escherichia coli and other bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the archaea. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine (IPR004803 from INTERPRO). Archaeoglobus fulgidus has both enzymes. . Probab=32.33 E-value=41 Score=15.15 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=16.1 Q ss_pred CCCCCCCEEEH---HHHHHHHHHHHHHHHHHH Q ss_conf 03733414408---788732236999999998 Q gi|254781011|r 122 HLFKGARVLVI---EDLVTLGNSMFEFVKVIR 150 (228) Q Consensus 122 ~~~~g~~vliV---DDviTtG~S~~~~i~~l~ 150 (228) ++.+.+.|||| |.++++|++++.++++.+ T Consensus 613 ~~R~~~EVL~VN~DDELLA~G~~~L~~~El~~ 644 (658) T TIGR00432 613 ELRAYDEVLVVNEDDELLAYGKALLNAIELRD 644 (658) T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH T ss_conf 66876536887277124565368864788875 No 152 >cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum. Probab=31.71 E-value=41 Score=15.08 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=13.6 Q ss_pred CCCEEEEECCCHHHHHHHHH Q ss_conf 66789982231257889998 Q gi|254781011|r 77 SIDIIAGGETAGIPFATLLA 96 (228) Q Consensus 77 ~~d~I~G~a~~Gip~a~~iA 96 (228) -||.|+|..+||| +|..++ T Consensus 42 ~FDli~GTSTGgi-IAl~Lg 60 (309) T cd07216 42 YFDLIGGTSTGGL-IAIMLG 60 (309) T ss_pred CCCEEEEECHHHH-HHHHHH T ss_conf 0037887088999-999982 No 153 >pfam00573 Ribosomal_L4 Ribosomal protein L4/L1 family. This family includes Ribosomal L4/L1 from eukaryotes and archaebacteria and L4 from eubacteria. L4 from yeast has been shown to bind rRNA. Probab=31.64 E-value=42 Score=15.07 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=42.5 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHH--HHHHHHCC-CC Q ss_conf 3341440878873223699999999865987856888874176324899999779809996329999--99999888-99 Q gi|254781011|r 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI--LTIAEKLK-IF 201 (228) Q Consensus 125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~i--l~~l~~~~-~I 201 (228) ...++++|||+-.+=....++++.|++.|..-..++.|. +.. ...-.++..|++-..+++.++| .+.+.... .| T Consensus 103 ~~~~l~vvd~~~~~~~KTk~~~~~L~~l~~~~~~~LiV~--~~~-~~n~~~a~rNi~~v~v~~~~~lnv~dll~~~~lvi 179 (190) T pfam00573 103 REGKLVVVDDFELEIPKTKEAVKLLKNLGLKGKSVLIVV--DEK-DENLYLSARNLPGVDVVTVDGLNVYDLLPADKVVI 179 (190) T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEE--CCC-HHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEE T ss_conf 477628961477788888999999997399887179997--880-16799997087881587548820999847996998 Q ss_pred CHHHHHHHH Q ss_conf 989999999 Q gi|254781011|r 202 NHDVLEEVR 210 (228) Q Consensus 202 ~~~~~~~I~ 210 (228) +++-++.|+ T Consensus 180 t~~Al~~l~ 188 (190) T pfam00573 180 TKSALEKLE 188 (190) T ss_pred EHHHHHHHH T ss_conf 789999985 No 154 >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated Probab=31.24 E-value=41 Score=15.11 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=7.8 Q ss_pred HHCCCCCCCEEEHHHHH Q ss_conf 31037334144087887 Q gi|254781011|r 120 EGHLFKGARVLVIEDLV 136 (228) Q Consensus 120 EG~~~~g~~vliVDDvi 136 (228) +-.+.++.|++.+|-.- T Consensus 143 ~~~i~~~Tklv~~Esps 159 (433) T PRK08134 143 RAAIRPNTRLLFGETLG 159 (433) T ss_pred HHHCCCCCEEEEEECCC T ss_conf 87559875289985389 No 155 >TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit; InterPro: IPR011883 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . . Probab=30.70 E-value=43 Score=14.97 Aligned_cols=36 Identities=17% Similarity=0.023 Sum_probs=26.7 Q ss_pred HHHHHHCC-CEEEEEEEEEEC-----CCCHHHHHHHHHCCCE Q ss_conf 99998659-878568888741-----7632489999977980 Q gi|254781011|r 146 VKVIRDSG-GIIQDGIGLFFY-----DIFPEVPARFRENNIK 181 (228) Q Consensus 146 i~~l~~~g-~~V~~~~vii~~-----~~~~~~~~~l~~~gi~ 181 (228) -++|+-+| .+.+.+-.-++- -..+.|+++|++|||- T Consensus 50 ~~A~~~~GW~~~VeV~~~L~P~WTTdwITe~are~Lr~yGIA 91 (152) T TIGR02159 50 RDALRALGWVEEVEVKTSLDPAWTTDWITEDAREKLREYGIA 91 (152) T ss_pred HHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCC T ss_conf 999974789751158877189878400270036888850887 No 156 >PRK08064 cystathionine beta-lyase; Provisional Probab=30.38 E-value=20 Score=17.14 Aligned_cols=12 Identities=8% Similarity=0.335 Sum_probs=5.2 Q ss_pred CCCCCCEEEHHH Q ss_conf 373341440878 Q gi|254781011|r 123 LFKGARVLVIED 134 (228) Q Consensus 123 ~~~g~~vliVDD 134 (228) +.++.|++.+|- T Consensus 135 i~~~Tklv~~Es 146 (390) T PRK08064 135 IKPNTKLFYVET 146 (390) T ss_pred CCCCCEEEEEEC T ss_conf 788845999978 No 157 >TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity. Probab=30.33 E-value=44 Score=14.93 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=42.9 Q ss_pred HHHCCCCCCC--EEEEECCCHHH--HHHHHHHH--CCCCEEEEEC---CCCC----------C-H-HH---HHHHHCCCC Q ss_conf 6421756667--89982231257--88999851--5871787631---5642----------0-1-10---013310373 Q gi|254781011|r 70 LRNIGFESID--IIAGGETAGIP--FATLLAER--LNLPMIYVRK---KSKK----------H-G-QK---SQIEGHLFK 125 (228) Q Consensus 70 ~~~~~~~~~d--~I~G~a~~Gip--~a~~iA~~--l~~p~~~vRK---~~K~----------h-G-~~---~~iEG~~~~ 125 (228) .......++| +++|+=-.||+ +...+... .+.|-+.++- .++. | | |. ...|-...+ T Consensus 19 ~~~~~~e~~~~iv~~GmGGSGi~G~~~~~~~~~~~~~~Pvfvv~DY~~p~~v~~~~~lIAvSYSGNT~ETl~~~e~A~~~ 98 (338) T TIGR02128 19 DEILKIEAYDEIVISGMGGSGIAGRILSELLLEKSFEVPVFVVKDYRLPAFVDGKTLLIAVSYSGNTEETLSAVEEAKKK 98 (338) T ss_pred CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHC T ss_conf 43213465562278725657899999999865324788888870778969889851799986178668999999999865 Q ss_pred CCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 3414408788732236999999998659878568 Q gi|254781011|r 126 GARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228) Q Consensus 126 g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228) +.+|++ |||||.+.+..+ +.|..|.-+ T Consensus 99 ~~~~~a----ITSGG~L~e~A~---e~g~~~i~i 125 (338) T TIGR02128 99 GAKVIA----ITSGGKLEEMAK---EEGLDVIKI 125 (338) T ss_pred CCCEEE----EECCCHHHHHCC---CCCCCEEEE T ss_conf 795599----944853886301---148756882 No 158 >COG1433 Uncharacterized conserved protein [Function unknown] Probab=30.25 E-value=44 Score=14.92 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=38.7 Q ss_pred HHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCC Q ss_conf 999999998659878568888741763248999997798099963--2999999999888 Q gi|254781011|r 142 MFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLA--TWNDILTIAEKLK 199 (228) Q Consensus 142 ~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~--t~~~il~~l~~~~ 199 (228) -..+.+.|++.|++++- ..+.-+.+...|+++||+++..- +.+|.++.+.+.. T Consensus 54 G~~~a~~l~~~gvdvvi-----~~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~ 108 (121) T COG1433 54 GIRIAELLVDEGVDVVI-----ASNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGE 108 (121) T ss_pred HHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCC T ss_conf 17799999976998999-----77669779999997495799659989999999986187 No 159 >PRK13949 shikimate kinase; Provisional Probab=30.25 E-value=21 Score=16.99 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=20.5 Q ss_pred EEEEECCCH-HHHHHHHHHHCCCCEEEE Q ss_conf 899822312-578899985158717876 Q gi|254781011|r 80 IIAGGETAG-IPFATLLAERLNLPMIYV 106 (228) Q Consensus 80 ~I~G~a~~G-ip~a~~iA~~l~~p~~~v 106 (228) +++|....| -.++-.+|.+++.||+=. T Consensus 5 ~LiG~mGsGKstiGk~La~~l~~~fiD~ 32 (169) T PRK13949 5 FLVGYMGAGKTTLGKALARELGLSFIDL 32 (169) T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEC T ss_conf 9979999988999999999959997978 No 160 >COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Probab=30.10 E-value=44 Score=14.91 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=42.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC-----CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHC Q ss_conf 87322369999999986598785688887417-----63248999997798099963299999999988 Q gi|254781011|r 135 LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD-----IFPEVPARFRENNIKLHYLATWNDILTIAEKL 198 (228) Q Consensus 135 viTtG~S~~~~i~~l~~~g~~V~~~~vii~~~-----~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~ 198 (228) |+.-.|-...++++.+-+|....+++|=+--+ +.+...+--+++|++ ++++.||+++.... T Consensus 136 Vl~R~GHTEasVdLarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~---~iti~dli~yr~~~ 201 (203) T COG0108 136 VLERRGHTEAAVDLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLP---VITIEDLIEYRKKH 201 (203) T ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCC---EEEHHHHHHHHHHH T ss_conf 6314880799999999839997379999867986615738999999983996---88899999999850 No 161 >PRK09028 cystathionine beta-lyase; Provisional Probab=30.03 E-value=27 Score=16.27 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=7.4 Q ss_pred HHCCCCCCCEEEHHHH Q ss_conf 3103733414408788 Q gi|254781011|r 120 EGHLFKGARVLVIEDL 135 (228) Q Consensus 120 EG~~~~g~~vliVDDv 135 (228) +..+.++.|++.+|-. T Consensus 140 ~~~i~~~Tklv~~Etp 155 (394) T PRK09028 140 RELIRPNTKVLFLESP 155 (394) T ss_pred HHHCCCCCEEEEEECC T ss_conf 8536877269999558 No 162 >pfam04659 Arch_fla_DE Archaeal flagella protein. Family of archaeal flaD and flaE proteins. Conserved region found at N-terminus of flaE but towards the C-terminus of flaD. Probab=29.94 E-value=44 Score=14.89 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=27.3 Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 32999999999888999899999999997299 Q gi|254781011|r 186 ATWNDILTIAEKLKIFNHDVLEEVRCFLDNPM 217 (228) Q Consensus 186 ~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~ 217 (228) -...++|++.++-|+||++..+.+..|++... T Consensus 36 ~~~~~~LdYY~~igWIs~~v~~~L~~~lkG~~ 67 (99) T pfam04659 36 NNLVDALDYYENLGWISEEVRAQLLKFLKGID 67 (99) T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC T ss_conf 20899999999838667899999999984678 No 163 >PRK08249 cystathionine gamma-synthase; Provisional Probab=29.80 E-value=26 Score=16.38 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=26.4 Q ss_pred HHHCCCCCCCEEEHHHHHHHHH---HHHHHHHHHHHCCCEEEEEEEEEECCCCHH--HHHHHH-HCCCEEEEECCH Q ss_conf 3310373341440878873223---699999999865987856888874176324--899999-779809996329 Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGN---SMFEFVKVIRDSGGIIQDGIGLFFYDIFPE--VPARFR-ENNIKLHYLATW 188 (228) Q Consensus 119 iEG~~~~g~~vliVDDviTtG~---S~~~~i~~l~~~g~~V~~~~vii~~~~~~~--~~~~l~-~~gi~~~sl~t~ 188 (228) ++..+.++.|++.+|-.-.-.- -+....++.++.|+ .+++| +-|.. ....|+ -..|-+||++.| T Consensus 142 ~~~ai~~~Tklv~~EtpsNP~l~v~Di~~ia~iA~~~g~-----~~vVD-NTfatP~~~~Pl~~GaDivvhS~TKy 211 (398) T PRK08249 142 IEREIAKGCDLLYLETPTNPTLKITDIRRLSAAAHEVGA-----LVVVD-NTFATPINQNPLALGADLVVHSATKF 211 (398) T ss_pred HHHHCCCCCEEEEEECCCCCCCEEECHHHHHHHHHHCCC-----EEEEE-CCCCHHHCCCCCCCCCCEEEECCCCE T ss_conf 998558886189984489997466647999999987499-----69984-77420312782115798799726620 No 164 >KOG0337 consensus Probab=29.43 E-value=35 Score=15.54 Aligned_cols=67 Identities=22% Similarity=0.243 Sum_probs=31.1 Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE Q ss_conf 99985158717876315642011001331037334144087887322369999999986598785688887 Q gi|254781011|r 93 TLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 93 ~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228) +-|+..+..-|+++|++.|..-....+.+...+.+.++- +.|++-+.-....++.+|..+.++..-. T Consensus 229 tkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf----~~tk~hve~~~~ll~~~g~~~s~iyssl 295 (529) T KOG0337 229 TKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVF----VATKHHVEYVRGLLRDFGGEGSDIYSSL 295 (529) T ss_pred HHCCHHHHHHEEEECCHHHHHHHHHHHHCCCCCCCEEEE----ECCCCHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 210545451422306178899999998512566650698----3153047898878986398744111445 No 165 >PRK05968 hypothetical protein; Provisional Probab=29.28 E-value=28 Score=16.15 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=12.7 Q ss_pred CCCCEEEHHHHHHHHHH---HHHHHHHHHHCCC Q ss_conf 33414408788732236---9999999986598 Q gi|254781011|r 125 KGARVLVIEDLVTLGNS---MFEFVKVIRDSGG 154 (228) Q Consensus 125 ~g~~vliVDDviTtG~S---~~~~i~~l~~~g~ 154 (228) ++.|++.+|-.-.-.-. +...+++.++.|+ T Consensus 146 ~~Tklv~~EtpsNP~l~v~DI~~ia~iA~~~g~ 178 (389) T PRK05968 146 PGAKLLYLESPTSWVFELQDIAALAALAKRHGV 178 (389) T ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 687289997899988727389999999998399 No 166 >PRK02747 consensus Probab=29.12 E-value=43 Score=15.00 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=45.5 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHH-----HHHHH-HCCCEEEE---ECCHHHHHHHHHHCC-------- Q ss_conf 32236999999998659878568888741763248-----99999-77980999---632999999999888-------- Q gi|254781011|r 137 TLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEV-----PARFR-ENNIKLHY---LATWNDILTIAEKLK-------- 199 (228) Q Consensus 137 TtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~-----~~~l~-~~gi~~~s---l~t~~~il~~l~~~~-------- 199 (228) .|+-+..+.++.+.+.|+.-. ++.=+++|....| -+.+. ..++++.. +.+++|+.+.+...+ T Consensus 153 ~t~~~~~~~~~~~~~~G~gei-l~tdI~rDG~~~G~dl~l~~~i~~~~~~pvIasGGv~~~~di~~~~~~~~~~av~~g~ 231 (257) T PRK02747 153 PTGIDAVEFAQKVVSLGAGEI-LLTSMDRDGTKAGFDLPLTRAIADAVRVPVIASGGVGTLDHLVEGVRDGHATAVLAAS 231 (257) T ss_pred ECCCHHHHHHHHHHHCCCCEE-EEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHH T ss_conf 343039999999997099889-9998835573267886999999860799899977999999999999838984998832 Q ss_pred --CCCHHHHHHHHHHHHH Q ss_conf --9998999999999972 Q gi|254781011|r 200 --IFNHDVLEEVRCFLDN 215 (228) Q Consensus 200 --~I~~~~~~~I~~~l~d 215 (228) +..+.....+++|+.+ T Consensus 232 ~~~~~~~~l~~ak~~L~~ 249 (257) T PRK02747 232 IFHFGTYTIGEAKAHMAA 249 (257) T ss_pred HHHCCCCCHHHHHHHHHH T ss_conf 677699899999999998 No 167 >smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Probab=29.02 E-value=43 Score=14.99 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=30.7 Q ss_pred CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE Q ss_conf 37334144087887322369999999986598785 Q gi|254781011|r 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228) Q Consensus 123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228) +.+|++++=|++.-.++.+..+++..+++.+..|. T Consensus 44 l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~ 78 (85) T smart00228 44 LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVT 78 (85) T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE T ss_conf 98999999999999899989999999877999799 No 168 >PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Probab=28.97 E-value=46 Score=14.78 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECC-----CCHHHHHHHHHCCCEEEEECCHHHHHHHHHH Q ss_conf 69999999986598785688887417-----6324899999779809996329999999998 Q gi|254781011|r 141 SMFEFVKVIRDSGGIIQDGIGLFFYD-----IFPEVPARFRENNIKLHYLATWNDILTIAEK 197 (228) Q Consensus 141 S~~~~i~~l~~~g~~V~~~~vii~~~-----~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~ 197 (228) -...++++.+-+|...++++|=+-.+ |.+.-.+--++++++ +.|+.||++|-.+ T Consensus 142 HTEA~vdL~~lAG~~p~~vi~Ei~~~dG~mar~~~l~~fa~~h~Lk---iiTIaDLI~YR~~ 200 (339) T PRK09314 142 HTEGSVDLCKLAGLKPVAVICEIVKEDGTMARRDDLEIFAKKHNLK---MIYVSDLIEYRLK 200 (339) T ss_pred CHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCE---EEEHHHHHHHHHH T ss_conf 1689999999859986499999965889683489999999984983---9999999999983 No 169 >PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Probab=28.92 E-value=46 Score=14.78 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=25.2 Q ss_pred HHCCCCCCCE-------EEHHHHHHH------HHHHHHHHHHHHHCCCEEEEEEEEEE Q ss_conf 3103733414-------408788732------23699999999865987856888874 Q gi|254781011|r 120 EGHLFKGARV-------LVIEDLVTL------GNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228) Q Consensus 120 EG~~~~g~~v-------liVDDviTt------G~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228) -|.+.+++.+ .+..|++-+ +.++..+++.+.++|. |+++.+. T Consensus 240 kG~i~~~~pvLVRVHs~~~~~Dv~Gs~~~~~~~~qL~~Am~~I~~eG~---GVlVyLr 294 (369) T PRK12485 240 MGDIRREQPTLVRVHVIDPLRDLVGAEYAGPANWTLWAALQKVAEEGH---GVVVVLA 294 (369) T ss_pred ECCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCC---EEEEEEE T ss_conf 457788998469998115513342586689765369999999997298---5999981 No 170 >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated Probab=28.79 E-value=30 Score=15.97 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=7.5 Q ss_pred HCCCCCCCEEEHHHHH Q ss_conf 1037334144087887 Q gi|254781011|r 121 GHLFKGARVLVIEDLV 136 (228) Q Consensus 121 G~~~~g~~vliVDDvi 136 (228) ..+.++.+++.+|-.- T Consensus 144 ~~i~~~Tkli~~EsPs 159 (431) T PRK08248 144 AAITDKTKALFAETIG 159 (431) T ss_pred HHCCCCCEEEEEECCC T ss_conf 7537774599960489 No 171 >cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some Probab=28.77 E-value=46 Score=14.76 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=35.4 Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHH----HHHHHHHHHCCCEEEEEEEEEECCCCHH-------H Q ss_conf 7876315642011001331037334144087887322369----9999999865987856888874176324-------8 Q gi|254781011|r 103 MIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSM----FEFVKVIRDSGGIIQDGIGLFFYDIFPE-------V 171 (228) Q Consensus 103 ~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~----~~~i~~l~~~g~~V~~~~vii~~~~~~~-------~ 171 (228) ..|+|-..++.....|.+.-..-++.+-+..|..+.+..- .+.++.+++ | +++++-..+|+.. - T Consensus 2 ~gY~RvSt~~Q~~~~Q~~~l~~~~~~~~i~~D~~sg~~~~Rp~~~~ll~~~~~-g----d~lvv~~ldRl~R~~~~~~~~ 76 (126) T cd03768 2 IGYARVSTDDQSLERQLEALKAAGECDKIFEEKGSGGKKERPELQKLLEDLRE-G----DTLVVTKLDRLGRSTKDLLEI 76 (126) T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHCCC-C----CEEEEEECCCCCCCHHHHHHH T ss_conf 89997388868999999999971884679998656167788335677552236-9----889998778247889999999 Q ss_pred HHHHHHCCCEEEEEC Q ss_conf 999997798099963 Q gi|254781011|r 172 PARFRENNIKLHYLA 186 (228) Q Consensus 172 ~~~l~~~gi~~~sl~ 186 (228) .+.|.+.||.++++- T Consensus 77 ~~~l~~~gv~l~~~~ 91 (126) T cd03768 77 VEELREKGVSLRSLT 91 (126) T ss_pred HHHHHHCCCEEEECC T ss_conf 999997798799755 No 172 >smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain. Probab=28.55 E-value=38 Score=15.36 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=22.8 Q ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 99977980999632999999999888999899999999997 Q gi|254781011|r 174 RFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLD 214 (228) Q Consensus 174 ~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~ 214 (228) .+..+-+.+..-+..++|+++|.+.+.+++++.+.|+..-. T Consensus 8 ~Lr~nr~~L~~~l~~~~lld~L~~~~vlt~~~~e~I~~~~t 48 (88) T smart00114 8 LLRRNRVRLGEELGVDGLLDYLVEKNVLTEKEIEAIKAATT 48 (88) T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHCCC T ss_conf 99997999999684899999998779999899999993699 No 173 >cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit. Probab=28.44 E-value=34 Score=15.64 Aligned_cols=59 Identities=25% Similarity=0.283 Sum_probs=34.0 Q ss_pred CCCCCEEEECCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCEEE-EECCCHHHHHHHHHHHCCCCEE Q ss_conf 87264014262135-798999999999999866421756667899-8223125788999851587178 Q gi|254781011|r 39 GIVSPLYIDCRKLI-SFVRARSMIMDLTAKTVLRNIGFESIDIIA-GGETAGIPFATLLAERLNLPMI 104 (228) Q Consensus 39 G~~Sp~Y~d~r~~~-s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~-G~a~~Gip~a~~iA~~l~~p~~ 104 (228) |.--=+.++...+- .+|.. .+..+++.+.+ .++|.|. |-...|--++..+|.+|+.|++ T Consensus 59 GaD~v~~v~~~~~~~~~~~~---~a~~la~~i~~----~~~dlVl~g~~s~g~~~~~~lA~~L~~~~v 119 (181) T cd01985 59 GADKVLLVEDPALAGYDPEA---TAKALAALIKK----EKPDLILAGATSIGKQLAPRVAALLGVPQI 119 (181) T ss_pred CCCEEEEECCCCCCCCCHHH---HHHHHHHHHHH----CCCCEEEECCCHHHCCHHHHHHHHHCCCCC T ss_conf 89789998167445768899---99999999986----099899960410222589999998599731 No 174 >PRK13937 phosphoheptose isomerase; Provisional Probab=28.40 E-value=47 Score=14.72 Aligned_cols=115 Identities=16% Similarity=0.055 Sum_probs=56.5 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCC----------------CCCHH-- Q ss_conf 989999999999998664217566678998223125788999851587178763156----------------42011-- Q gi|254781011|r 54 FVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKS----------------KKHGQ-- 115 (228) Q Consensus 54 ~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~----------------K~hG~-- 115 (228) .++....+++.+.+.+.+. +-=.++| --|.-..|.-+|..+-.++...|+.- .|+|- T Consensus 24 ~~~~I~~~a~~i~~~~~~g----~kI~~~G-NGGSaa~A~Hfa~dl~~~~~~~r~~lpaisL~~d~~~lTA~~ND~g~~~ 98 (192) T PRK13937 24 LLAAIAKIAEALIEALASG----GKLLLCG-NGGSAADAQHIAAELVGRYKKERPALPAIALTTDTSALTAIGNDYGYER 98 (192) T ss_pred HHHHHHHHHHHHHHHHHCC----CEEEEEE-CCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHCCCCHHH T ss_conf 4999999999999999879----9899996-8631888999999996413557898535776788287776427787899 Q ss_pred --HHHHHHCCCCCCCEEEHHHHHHHHHH--HHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCE Q ss_conf --00133103733414408788732236--9999999986598785688887417632489999977980 Q gi|254781011|r 116 --KSQIEGHLFKGARVLVIEDLVTLGNS--MFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIK 181 (228) Q Consensus 116 --~~~iEG~~~~g~~vliVDDviTtG~S--~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~ 181 (228) .++++....+|+=++.+ -|+|.| ++++++.-++.|++|++. . +...+.-..+.+..+. T Consensus 99 if~~ql~~~~~~gDili~i---S~SGnS~Nii~A~~~A~~~g~~~i~l---t--G~~gg~l~~~~D~~i~ 160 (192) T PRK13937 99 VFARQVEALGRPGDVLIGI---STSGNSPNVLAALEKARELGMTTIGL---T--GRDGGKMKELCDLLLI 160 (192) T ss_pred HHHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHHHCCCEEEEE---E--CCCCHHHHHHCCEEEE T ss_conf 9999999557889889997---79999979999999999879979999---8--8896057883998999 No 175 >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] Probab=28.29 E-value=47 Score=14.71 Aligned_cols=16 Identities=6% Similarity=0.304 Sum_probs=7.1 Q ss_pred HHHHHHHHHHHHHCCC Q ss_conf 2369999999986598 Q gi|254781011|r 139 GNSMFEFVKVIRDSGG 154 (228) Q Consensus 139 G~S~~~~i~~l~~~g~ 154 (228) ||-+...+..|+++++ T Consensus 301 GGMlSNl~sQLkeqna 316 (472) T COG5016 301 GGMLSNLESQLKEQNA 316 (472) T ss_pred HHHHHHHHHHHHHCCH T ss_conf 1788999999987345 No 176 >KOG1993 consensus Probab=28.12 E-value=39 Score=15.25 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999997299778860988 Q gi|254781011|r 206 LEEVRCFLDNPMQWSKKNGGI 226 (228) Q Consensus 206 ~~~I~~~l~dP~~W~~~~g~~ 226 (228) -+.+++|-.||++|-.+++|. T Consensus 387 ~~eLEeW~~dPE~~~~Eq~~~ 407 (978) T KOG1993 387 EEELEEWTQDPEGWVLEQSGG 407 (978) T ss_pred HHHHHHHHCCHHHHHHHCCCC T ss_conf 988988750958764522456 No 177 >PRK07811 cystathionine gamma-synthase; Provisional Probab=27.42 E-value=32 Score=15.80 Aligned_cols=18 Identities=6% Similarity=0.174 Sum_probs=7.9 Q ss_pred HHCCCCCCCEEEHHHHHH Q ss_conf 310373341440878873 Q gi|254781011|r 120 EGHLFKGARVLVIEDLVT 137 (228) Q Consensus 120 EG~~~~g~~vliVDDviT 137 (228) +-.+.++.|++.+|-... T Consensus 137 ~~~i~~~Tkli~~Esp~N 154 (386) T PRK07811 137 RAAITPRTKLIWVETPTN 154 (386) T ss_pred HHHCCCCCEEEEEECCCC T ss_conf 865588834999977999 No 178 >COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism] Probab=27.05 E-value=39 Score=15.28 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=9.5 Q ss_pred EEEECCHHHHHHHHHHCCCCC Q ss_conf 999632999999999888999 Q gi|254781011|r 182 LHYLATWNDILTIAEKLKIFN 202 (228) Q Consensus 182 ~~sl~t~~~il~~l~~~~~I~ 202 (228) ...++|++ +.+++...+..+ T Consensus 535 ~w~i~t~W-l~~~~~~~g~~~ 554 (612) T COG3387 535 PWIITTLW-LSEYYLALGRLD 554 (612) T ss_pred CCEEEEEH-HHHHHHHCCCCH T ss_conf 12463038-999999746827 No 179 >PRK08058 DNA polymerase III subunit delta'; Validated Probab=27.03 E-value=50 Score=14.56 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=43.1 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHH---HH----HCCCCCCCEEEHHHHHHHHH-HHHHHHHHHHHCCCEEEEEEE Q ss_conf 78899985158717876315642011001---33----10373341440878873223-699999999865987856888 Q gi|254781011|r 90 PFATLLAERLNLPMIYVRKKSKKHGQKSQ---IE----GHLFKGARVLVIEDLVTLGN-SMFEFVKVIRDSGGIIQDGIG 161 (228) Q Consensus 90 p~a~~iA~~l~~p~~~vRK~~K~hG~~~~---iE----G~~~~g~~vliVDDviTtG~-S~~~~i~~l~~~g~~V~~~~v 161 (228) +-+..+.....-.+.+++++.+..+.... ++ .....+.||+|||++=+-.. +.-...+.|++=...+.-+++ T Consensus 67 ~~C~~~~~~~HPD~~~i~p~~~~i~idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~ 146 (329) T PRK08058 67 TNCKRIESGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILL 146 (329) T ss_pred HHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 89999876999976774566140779999999999643875788679997347762999999999986468978679987 Q ss_pred EE Q ss_conf 87 Q gi|254781011|r 162 LF 163 (228) Q Consensus 162 ii 163 (228) -- T Consensus 147 t~ 148 (329) T PRK08058 147 TE 148 (329) T ss_pred EC T ss_conf 29 No 180 >KOG0741 consensus Probab=26.96 E-value=50 Score=14.56 Aligned_cols=149 Identities=17% Similarity=0.240 Sum_probs=88.1 Q ss_pred HHHHHHHHHCCCCCCC-EEEEECCCH-HHHHHHHHHHCCCCEEEEECCCCCCH-----H----HHHHHHCCCCCCCEEEH Q ss_conf 9999866421756667-899822312-57889998515871787631564201-----1----00133103733414408 Q gi|254781011|r 64 LTAKTVLRNIGFESID-IIAGGETAG-IPFATLLAERLNLPMIYVRKKSKKHG-----Q----KSQIEGHLFKGARVLVI 132 (228) Q Consensus 64 ~~~~~i~~~~~~~~~d-~I~G~a~~G-ip~a~~iA~~l~~p~~~vRK~~K~hG-----~----~~~iEG~~~~g~~vliV 132 (228) .++++++......-.. .+.|++-.| ..+|+-+|..-+-||+=+=....--| + .+..|.....--.|++| T Consensus 525 llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivv 604 (744) T KOG0741 525 LLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVV 604 (744) T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 99998633466763589986699887688999997527998479737787037466788999999888763386508998 Q ss_pred HHHHH------HH----HHHHHHHHH-HHHCCCEEEEEEEEEECCCCHHHHHHHHHCC--------CEEEEECCHHHHHH Q ss_conf 78873------22----369999999-9865987856888874176324899999779--------80999632999999 Q gi|254781011|r 133 EDLVT------LG----NSMFEFVKV-IRDSGGIIQDGIGLFFYDIFPEVPARFRENN--------IKLHYLATWNDILT 193 (228) Q Consensus 133 DDviT------tG----~S~~~~i~~-l~~~g~~V~~~~vii~~~~~~~~~~~l~~~g--------i~~~sl~t~~~il~ 193 (228) ||+=+ -| -.++.+... |++..-+=...+++- .....+.|++.+ +.+-.+.+.+++.+ T Consensus 605 DdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~----TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~ 680 (744) T KOG0741 605 DDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFG----TTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLE 680 (744) T ss_pred CCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE----CCCHHHHHHHCCHHHHHHHEEECCCCCCHHHHHH T ss_conf 155656200246840357999999999524898884599996----2407999997277875111054675686478999 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 99988899989999999999729 Q gi|254781011|r 194 IAEKLKIFNHDVLEEVRCFLDNP 216 (228) Q Consensus 194 ~l~~~~~I~~~~~~~I~~~l~dP 216 (228) ++.+.+.+++++...+.+-+.+- T Consensus 681 vl~~~n~fsd~~~~~~~~~~~~~ 703 (744) T KOG0741 681 VLEELNIFSDDEVRAIAEQLLSK 703 (744) T ss_pred HHHHCCCCCCCHHHHHHHHHHCC T ss_conf 99971667841467899987422 No 181 >pfam11000 DUF2840 Protein of unknown function (DUF2840). This bacterial family of proteins have no known function. Probab=26.84 E-value=39 Score=15.24 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=40.2 Q ss_pred HCCCCEEEEECCCCCCHHH-HHHH-------H-------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 1587178763156420110-0133-------1-------03733414408788732236999999998659878568 Q gi|254781011|r 98 RLNLPMIYVRKKSKKHGQK-SQIE-------G-------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228) Q Consensus 98 ~l~~p~~~vRK~~K~hG~~-~~iE-------G-------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228) .-+--|+|+|-.+-+||+- .++. | -+.+|..+|+=-|==..=..++++|++++..|....++ T Consensus 38 ~PgavFafvRWaaNd~GTv~srldI~rA~~pge~~qt~P~V~PG~~iLLr~~Gw~kV~~VL~~IDaiEalGidp~dv 114 (149) T pfam11000 38 APGAVFAFVRWAANDFGTVVSRIDILRAVTPGEAYQTLPFVRPGGEILLRIEGWPKVERVLQAIDAIEALGIDPADV 114 (149) T ss_pred CCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHHEEEECCCCHHHHHHHHHHHHHHHCCCCHHHC T ss_conf 79978999997317865565545200106899864238861774304674358688999999876999839894663 No 182 >pfam09756 DDRGK DDRGK domain. This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Probab=26.67 E-value=50 Score=14.52 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=46.9 Q ss_pred CCCCCEEEHHHHHHH-HHHHHHHHHHHHH--CCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCC Q ss_conf 733414408788732-2369999999986--5987856888874176324899999779809996329999999998889 Q gi|254781011|r 124 FKGARVLVIEDLVTL-GNSMFEFVKVIRD--SGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKI 200 (228) Q Consensus 124 ~~g~~vliVDDviTt-G~S~~~~i~~l~~--~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~ 200 (228) .+..+|+++||+... |-+.-.+|+.|+. .-+.+.|| +-||+ .+=+.|---|..|..|+...|. T Consensus 109 Ik~~Kvv~ledLa~~F~l~t~d~i~rI~~Le~~g~i~GV--~DDRG------------KfIyIs~eE~~ava~fI~~rGR 174 (189) T pfam09756 109 IKLKKVVNLEELSAEFGLKTEDVIERIQDLEAQGSITGV--IDDRG------------KYIYISPEELEAVASFINKRGR 174 (189) T ss_pred HHHCCEEEHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEE--ECCCC------------CEEEECHHHHHHHHHHHHHCCC T ss_conf 987765319999988199689999999999987973104--65888------------8688669999999999998697 Q ss_pred CCHHHHHHH Q ss_conf 998999999 Q gi|254781011|r 201 FNHDVLEEV 209 (228) Q Consensus 201 I~~~~~~~I 209 (228) +|-.++... T Consensus 175 Vsi~eL~~~ 183 (189) T pfam09756 175 VSISELAEI 183 (189) T ss_pred EEHHHHHHH T ss_conf 609999998 No 183 >smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases. Probab=26.41 E-value=51 Score=14.49 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=32.2 Q ss_pred EEEEECCCHHHHHH-HHHHHCCCCE-EEEECCC-----CCCHHHH--HH--------H--HCCCCCCCEEEHHHHHHHHH Q ss_conf 89982231257889-9985158717-8763156-----4201100--13--------3--10373341440878873223 Q gi|254781011|r 80 IIAGGETAGIPFAT-LLAERLNLPM-IYVRKKS-----KKHGQKS--QI--------E--GHLFKGARVLVIEDLVTLGN 140 (228) Q Consensus 80 ~I~G~a~~Gip~a~-~iA~~l~~p~-~~vRK~~-----K~hG~~~--~i--------E--G~~~~g~~vliVDDviTtG~ 140 (228) +++-.+.||+-+++ -+|...+... ..+|.+. |.+|-.. .+ + -....|+.+=+|=|.+ .|. T Consensus 108 VlI~gg~G~vG~~aiqlak~~Ga~Vi~t~~s~~k~~~~~~lG~~~~~v~~~~~~~~~~~v~~~t~g~gvDvv~d~v-gg~ 186 (288) T smart00829 108 VLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSL-AGE 186 (288) T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEECC-CHH T ss_conf 9997898677799999999739830034088899999997699960762179950999999870898827999898-689 Q ss_pred HHHHHHHHHHHCCCE Q ss_conf 699999999865987 Q gi|254781011|r 141 SMFEFVKVIRDSGGI 155 (228) Q Consensus 141 S~~~~i~~l~~~g~~ 155 (228) +..++++.|+..|-- T Consensus 187 ~~~~~~~~l~~~G~~ 201 (288) T smart00829 187 FLDASLRCLAPGGRF 201 (288) T ss_pred HHHHHHHHHCCCCEE T ss_conf 999999975369889 No 184 >TIGR01426 MGT glycosyltransferase, MGT family; InterPro: IPR006326 These sequences belong to the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production. ; GO: 0016758 transferase activity transferring hexosyl groups, 0016999 antibiotic metabolic process. Probab=26.00 E-value=52 Score=14.44 Aligned_cols=53 Identities=13% Similarity=0.084 Sum_probs=35.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEE Q ss_conf 57989999999999998664217566678998223125788999851587178 Q gi|254781011|r 52 ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI 104 (228) Q Consensus 52 ~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~ 104 (228) +.-++.+-..+..+...+.+....+++|+|+=-...-+-.|.++|.++++|.+ T Consensus 74 ~~~~~~ll~~~~~~Lp~l~~~~~~d~pDlv~yD~a~~l~~G~llA~~l~~P~i 126 (429) T TIGR01426 74 LDIIEKLLDESLSLLPQLEEAYKGDRPDLVVYDIATPLWAGRLLARKLDVPVI 126 (429) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCEE T ss_conf 89999999999999999999714899878985313156899998765078868 No 185 >PRK13288 pyrophosphatase PpaX; Provisional Probab=25.64 E-value=53 Score=14.40 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=38.4 Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHC Q ss_conf 414408788732236999999998659878568888741763248999997798099963299999999988 Q gi|254781011|r 127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKL 198 (228) Q Consensus 127 ~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~ 198 (228) ++|++|+|-.. -+++-+++|..++++ .++ ..+.+.|++.+- -+-+-++.||++.+.+. T Consensus 156 ~e~l~VGDs~~-------Di~aA~~aG~~~i~v----~~g--~~~~~~l~~~~a-d~vi~~~~eL~~il~~l 213 (214) T PRK13288 156 EEALMVGDNYH-------DILAGKNAGTKTAGV----AWT--IKGREYLEQYKP-DFMLDKMSDLLAIVGDL 213 (214) T ss_pred CCEEEEECCHH-------HHHHHHHCCCEEEEE----ECC--CCCHHHHHHCCC-CEEECCHHHHHHHHHHC T ss_conf 86899968989-------999999959959999----389--998767976899-99989999999999861 No 186 >cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Probab=25.63 E-value=53 Score=14.40 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=15.9 Q ss_pred CCCCEEEEECCCHHH-HH-HHHHHHCCCCEEE Q ss_conf 666789982231257-88-9998515871787 Q gi|254781011|r 76 ESIDIIAGGETAGIP-FA-TLLAERLNLPMIY 105 (228) Q Consensus 76 ~~~d~I~G~a~~Gip-~a-~~iA~~l~~p~~~ 105 (228) .++|+|+| +||-+ +. ...|..+++|.+. T Consensus 88 ~kPd~vi~--~GGY~s~P~~laA~~~~iP~~i 117 (350) T cd03785 88 FKPDVVVG--FGGYVSGPVGLAAKLLGIPLVI 117 (350) T ss_pred CCCCEEEE--CCCCHHHHHHHHHHHCCCCCEE T ss_conf 49999998--8981038999999972998556 No 187 >PRK00939 translation initiation factor Sui1; Reviewed Probab=25.57 E-value=53 Score=14.39 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=46.3 Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEE Q ss_conf 7334144087887322369999999986---5987856888874176324899999779809996 Q gi|254781011|r 124 FKGARVLVIEDLVTLGNSMFEFVKVIRD---SGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYL 185 (228) Q Consensus 124 ~~g~~vliVDDviTtG~S~~~~i~~l~~---~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl 185 (228) ..|+.|-+|+-+-.+...+.+..+.|+. .|+.|.+-.+.+.=|..+...+.|++.|+++..+ T Consensus 34 r~GK~VTvI~Gl~~~~~~lk~lak~LK~~~g~GGtvK~g~IeiQGD~r~ki~~~L~~~G~~v~~I 98 (99) T PRK00939 34 RYGKEVTIIEGIDPKEIDLKELAKKLKSKLACGGTVKNGRIELQGDHRDRVKELLIEMGFSEENI 98 (99) T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEECCEEEECCCHHHHHHHHHHHCCCCCCCC T ss_conf 79987899758979989999999999897556962739999978826999999999869982022 No 188 >PRK06476 pyrroline-5-carboxylate reductase; Reviewed Probab=25.52 E-value=41 Score=15.10 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=7.8 Q ss_pred CEEEEECCCHHHHHHHH Q ss_conf 78998223125788999 Q gi|254781011|r 79 DIIAGGETAGIPFATLL 95 (228) Q Consensus 79 d~I~G~a~~Gip~a~~i 95 (228) ..|+.+ +.|+++...- T Consensus 87 ~~vISi-~AGi~i~~l~ 102 (255) T PRK06476 87 QTVISV-IAATTRAALL 102 (255) T ss_pred CEEEEE-CCCCCHHHHH T ss_conf 789997-3787799999 No 189 >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains. Probab=25.41 E-value=53 Score=14.37 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECC-----------CCHHHHHHHHHCCCEE Q ss_conf 369999999986598785688887417-----------6324899999779809 Q gi|254781011|r 140 NSMFEFVKVIRDSGGIIQDGIGLFFYD-----------IFPEVPARFRENNIKL 182 (228) Q Consensus 140 ~S~~~~i~~l~~~g~~V~~~~vii~~~-----------~~~~~~~~l~~~gi~~ 182 (228) |++.+..+.|.++|.++.-+.+.+.+. -.+.+.+.|++.|+++ T Consensus 11 GgL~~il~~L~~~~INIeY~Yaf~~~~~~~a~lI~r~~d~e~a~~~L~~~g~~~ 64 (65) T cd04882 11 GGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQERGVEL 64 (65) T ss_pred CHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHCCCEE T ss_conf 719999999988798879999994378976899998199999999999867678 No 190 >PRK10693 response regulator of RpoS; Provisional Probab=25.23 E-value=54 Score=14.35 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=14.4 Q ss_pred CCCEEEE----ECCCHHHHHHHHHH-HCCCCEEEE Q ss_conf 6678998----22312578899985-158717876 Q gi|254781011|r 77 SIDIIAG----GETAGIPFATLLAE-RLNLPMIYV 106 (228) Q Consensus 77 ~~d~I~G----~a~~Gip~a~~iA~-~l~~p~~~v 106 (228) .+|.|.- |.+.|+-+...+-. ....|.+++ T Consensus 51 ~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIvl 85 (337) T PRK10693 51 TPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLVI 85 (337) T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEE T ss_conf 99999996899999989999999985899649999 No 191 >PRK05319 rplD 50S ribosomal protein L4; Provisional Probab=25.16 E-value=54 Score=14.34 Aligned_cols=86 Identities=9% Similarity=0.120 Sum_probs=46.7 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHH--HHHHHHHCC-CC Q ss_conf 334144087887322369999999986598785688887417632489999977980999632999--999999888-99 Q gi|254781011|r 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWND--ILTIAEKLK-IF 201 (228) Q Consensus 125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~--il~~l~~~~-~I 201 (228) ...+++||||.-..=...-++++.|++.|..-. ++.|.+ +. ...-.++..|++-..+++.++ +.+.+.... .| T Consensus 118 ~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~~-~LiV~~-~~--~~nl~~a~rNi~~v~v~~~~~lnv~dLl~~~~lvi 193 (206) T PRK05319 118 REGRLVVVDDFSLEAPKTKELAAKLKNLGLEDK-VLIVTD-EV--DENLYLSARNLPNVDVLPADGLNVYDLLRADKVVI 193 (206) T ss_pred HCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCC-EEEEEC-CC--CHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEE T ss_conf 538859972576667788999999997799875-379836-64--47899998287992587548810999857995998 Q ss_pred CHHHHHHHHHHHH Q ss_conf 9899999999997 Q gi|254781011|r 202 NHDVLEEVRCFLD 214 (228) Q Consensus 202 ~~~~~~~I~~~l~ 214 (228) +++-++.|++++. T Consensus 194 t~~Al~~LeerLs 206 (206) T PRK05319 194 TKAAVKKIEERLA 206 (206) T ss_pred EHHHHHHHHHHHC T ss_conf 7899999999729 No 192 >PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional Probab=24.44 E-value=34 Score=15.66 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=46.6 Q ss_pred CCCCEEEHHH----HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH-HHHCCCEEEEECCHHHH Q ss_conf 3341440878----8732236999999998659878568888741763248999-99779809996329999 Q gi|254781011|r 125 KGARVLVIED----LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR-FRENNIKLHYLATWNDI 191 (228) Q Consensus 125 ~g~~vliVDD----viTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~-l~~~gi~~~sl~t~~~i 191 (228) .-++|+||-- |.-.=..+.|..+.|++.|.+|.-.+-=+- +|.++-... |.+.+|++--+..++|+ T Consensus 302 ~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~g~~V~faIHPVA-GRMPGHMNVLLAEa~VpYd~~~emdei 372 (459) T PRK09444 302 NSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA-GRLPGHMNVLLAEAKVPYDIVLEMDEI 372 (459) T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC-CCCCCCCEEEEEECCCCHHHHCCHHHH T ss_conf 09949996680899998889999999999977985899836467-888864013665148988886598664 No 193 >PRK03731 aroL shikimate kinase II; Reviewed Probab=24.35 E-value=29 Score=16.08 Aligned_cols=86 Identities=15% Similarity=0.236 Sum_probs=46.4 Q ss_pred EEEEECCCH-HHHHHHHHHHCCCCEEEEEC----C-C-------CCCHHHHH--HHH----CCCCCCCEEEHHHHHHHHH Q ss_conf 899822312-57889998515871787631----5-6-------42011001--331----0373341440878873223 Q gi|254781011|r 80 IIAGGETAG-IPFATLLAERLNLPMIYVRK----K-S-------KKHGQKSQ--IEG----HLFKGARVLVIEDLVTLGN 140 (228) Q Consensus 80 ~I~G~a~~G-ip~a~~iA~~l~~p~~~vRK----~-~-------K~hG~~~~--iEG----~~~~g~~vliVDDviTtG~ 140 (228) +++|....| -.+|-.+|..++.||+=.-. . . +.+|.... +|- .+.. .+ -|++||| T Consensus 6 ~LiG~mGsGKstiGk~LA~~L~~~fiD~D~~Ie~~~g~sI~eif~~~Ge~~FR~~E~~~l~~l~~-~~-----~VIstGG 79 (172) T PRK03731 6 FLVGPRGCGKTTVGMALAQALGYRFVDTDLWLQSTLQMTVAEIVEREGWAGFRARESAALEAVTA-PS-----TVVATGG 79 (172) T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHCC-CC-----EEEEECC T ss_conf 99889999889999999998599979786999988398999999983989999999999998427-88-----2898078 Q ss_pred HHH---HHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHH Q ss_conf 699---9999998659878568888741763248999997 Q gi|254781011|r 141 SMF---EFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRE 177 (228) Q Consensus 141 S~~---~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~ 177 (228) .+. +..+.|++.|. ++.++.+ ++.-.+++.. T Consensus 80 G~v~~~~n~~~L~~~g~-----vv~L~~~-~~~l~~Rl~~ 113 (172) T PRK03731 80 GIILTEENRAFMRNNGI-----VIYLCAP-VSVLANRLEA 113 (172) T ss_pred CCCCCHHHHHHHHHCCE-----EEEEECC-HHHHHHHHHC T ss_conf 64268999999996899-----9999799-9999999813 No 194 >PRK08508 biotin synthase; Provisional Probab=24.31 E-value=30 Score=15.97 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=6.5 Q ss_pred HHHHHHHHHCCCEE Q ss_conf 99999998659878 Q gi|254781011|r 143 FEFVKVIRDSGGII 156 (228) Q Consensus 143 ~~~i~~l~~~g~~V 156 (228) +++++.++++|.+| T Consensus 140 l~tl~~~k~aGl~v 153 (279) T PRK08508 140 FQTCLNAKEAGLGL 153 (279) T ss_pred HHHHHHHHHCCCEE T ss_conf 99999999819948 No 195 >COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion] Probab=24.26 E-value=56 Score=14.24 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=34.6 Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC-CHHHHHHHHHHHCCCCE Q ss_conf 640142621357989999999999998664217566678998223-12578899985158717 Q gi|254781011|r 42 SPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGET-AGIPFATLLAERLNLPM 103 (228) Q Consensus 42 Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~-~Gip~a~~iA~~l~~p~ 103 (228) ..+.+|+-.+...|.....+.+.+++.+.......+++.|..+++ .|=-++.-+|.+++.++ T Consensus 45 ~~~Gad~v~~~e~~~~~~~~~e~~~~~l~~l~~~~~p~~il~~aT~~Gk~la~rvAa~l~~~~ 107 (313) T COG2025 45 KAYGADKVLVAEGPELANYLPEPYADALVDLAKKYKPDVVLLPATTNGKELAPRVAARLDVGL 107 (313) T ss_pred HHCCCCEEEEECCCCHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCC T ss_conf 754987899961663200532589999999998469987997577636778999999808871 No 196 >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] Probab=24.23 E-value=56 Score=14.23 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=33.4 Q ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHCCCE-----EEEE-----------------EEEEECC--CCHHHHHHHHHCCCEE Q ss_conf 41440878873223699999999865987-----8568-----------------8887417--6324899999779809 Q gi|254781011|r 127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGI-----IQDG-----------------IGLFFYD--IFPEVPARFRENNIKL 182 (228) Q Consensus 127 ~~vliVDDviTtG~S~~~~i~~l~~~g~~-----V~~~-----------------~vii~~~--~~~~~~~~l~~~gi~~ 182 (228) -++++--|+. ||+.+....|++.+.. |... ++|+.++ -.+.+.+..+..|+++ T Consensus 307 ~~viiKaDt~---GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~as~avIigFnV~~~~~a~~~ae~~~V~I 383 (509) T COG0532 307 LNVILKADTQ---GSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIGFNVRVDPEARRLAESEGVKI 383 (509) T ss_pred EEEEEEECCC---CHHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCE T ss_conf 0479997066---6199999999852797606889986048977326888873398799972577889999987469857 Q ss_pred EEECCHHHHHHHH Q ss_conf 9963299999999 Q gi|254781011|r 183 HYLATWNDILTIA 195 (228) Q Consensus 183 ~sl~t~~~il~~l 195 (228) .+---+..+++.+ T Consensus 384 ~~~~iIY~lied~ 396 (509) T COG0532 384 RYYDVIYKLIEDV 396 (509) T ss_pred EECCHHHHHHHHH T ss_conf 8816499999999 No 197 >KOG3209 consensus Probab=24.07 E-value=56 Score=14.21 Aligned_cols=58 Identities=28% Similarity=0.438 Sum_probs=36.4 Q ss_pred EEEECCCCCC-------------HHHHHHHH-------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE Q ss_conf 8763156420-------------11001331-------037334144087887322369999999986598785688887 Q gi|254781011|r 104 IYVRKKSKKH-------------GQKSQIEG-------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 104 ~~vRK~~K~h-------------G~~~~iEG-------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228) ++-|||.-+| |.++.||| .++-|+|++-|.-.--.--|--..|.+|+++|..|. +.|+ T Consensus 758 ~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVt--LtIi 835 (984) T KOG3209 758 VLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVT--LTII 835 (984) T ss_pred EEECCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEECCEEEECCCCHHHHHHHHHCCCEEE--EEEC T ss_conf 98604677602899843668987743125698167505543265688754703303672568888873685589--9974 No 198 >cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ Probab=23.94 E-value=57 Score=14.20 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=52.1 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCHH-HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCC-CCCCEEEHHHHHHH Q ss_conf 99999998664217566678998223125-78899985158717876315642011001331037-33414408788732 Q gi|254781011|r 61 IMDLTAKTVLRNIGFESIDIIAGGETAGI-PFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLF-KGARVLVIEDLVTL 138 (228) Q Consensus 61 i~~~~~~~i~~~~~~~~~d~I~G~a~~Gi-p~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~-~g~~vliVDDviTt 138 (228) +++.+++.+.+. +++.|+|++-+++ |+-..+...-++.++..|-|.- -.-.-+|.-. .|+--++ ++|+ T Consensus 2 va~~l~~~L~~~----Gv~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~---A~~mA~gyar~tg~~gv~---~~t~ 71 (164) T cd07039 2 VADVIVETLENW----GVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEA---AAFAASAEAKLTGKLGVC---LGSS 71 (164) T ss_pred HHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHCCCCEEEEECCHHH---HHHHHHHHHHHHCCCEEE---EEEC T ss_conf 899999999987----999999917835799999998659973995487899---999999999997998799---9842 Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEE Q ss_conf 2369999999986598785688887 Q gi|254781011|r 139 GNSMFEFVKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 139 G~S~~~~i~~l~~~g~~V~~~~vii 163 (228) |-....++..|-++-..-.-+++|. T Consensus 72 GpG~tN~~~gl~~A~~~~~Pll~i~ 96 (164) T cd07039 72 GPGAIHLLNGLYDAKRDRAPVLAIA 96 (164) T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 8238889999999998589779996 No 199 >TIGR00070 hisG ATP phosphoribosyltransferase; InterPro: IPR001348 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions .ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the two forms of ATP phosphoribosyltransferase: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity . The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined , . The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplamsic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process. Probab=23.84 E-value=46 Score=14.77 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 88732236999999998659878568 Q gi|254781011|r 134 DLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228) Q Consensus 134 DviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228) |+++||.| ||.+|+.+++. T Consensus 183 DLvstG~T-------L~~NgL~~id~ 201 (317) T TIGR00070 183 DLVSTGTT-------LRENGLREIDV 201 (317) T ss_pred EEECCHHH-------HHHCCCEEEEE T ss_conf 42111278-------97539688988 No 200 >pfam08679 DsrD Dissimilatory sulfite reductase D (DsrD). The structure of the DsrD protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins. The structure suggests a possible role for DsrD in transcription of translation of genes which catalyse dissimilatory sulfite reduction. Probab=23.72 E-value=51 Score=14.47 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=17.4 Q ss_pred EECCCCCCEEEE-CCCCC--CCHHHHHHHHHHHH Q ss_conf 311872640142-62135--79899999999999 Q gi|254781011|r 36 LTSGIVSPLYID-CRKLI--SFVRARSMIMDLTA 66 (228) Q Consensus 36 L~SG~~Sp~Y~d-~r~~~--s~P~~~~~i~~~~~ 66 (228) .+++.+|++||. ...++ .-|....+++..++ T Consensus 10 ~k~~~KskfYf~D~~k~~Pd~K~RevKKi~~~LV 43 (65) T pfam08679 10 AKNGKKTKFYFKDFYKAIPDAKPREVKKIVNELV 43 (65) T ss_pred HHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 9728878520877998787526899999999985 No 201 >PRK13633 cobalt transporter ATP-binding subunit; Provisional Probab=23.54 E-value=58 Score=14.15 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=17.4 Q ss_pred HCCCCCCCEEEHHHHHHHH------HHHHHHHHHH-HHCCCEEE Q ss_conf 1037334144087887322------3699999999-86598785 Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLG------NSMFEFVKVI-RDSGGIIQ 157 (228) Q Consensus 121 G~~~~g~~vliVDDviTtG------~S~~~~i~~l-~~~g~~V~ 157 (228) ..+...-++++.|.- |+| ..+++.++.+ ++.|..|. T Consensus 158 ~aLa~~P~iLilDEP-Ts~LDp~~~~~i~~~l~~l~~e~g~Tii 200 (281) T PRK13633 158 GILAMRPECIIFDEP-TAMLDPSGRREVVNTIKELNKKYGITII 200 (281) T ss_pred HHHHCCCCEEEEECC-CCCCCHHHHHHHHHHHHHHHHHCCCEEE T ss_conf 999859999998187-3438989999999999999984098999 No 202 >PRK11880 pyrroline-5-carboxylate reductase; Reviewed Probab=23.39 E-value=39 Score=15.28 Aligned_cols=14 Identities=0% Similarity=-0.175 Sum_probs=6.7 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 57989999999999 Q gi|254781011|r 52 ISFVRARSMIMDLT 65 (228) Q Consensus 52 ~s~P~~~~~i~~~~ 65 (228) ---|.....+.+.+ T Consensus 69 aVKP~~~~~vl~~l 82 (267) T PRK11880 69 AVKPQVMEDVLSEL 82 (267) T ss_pred EECHHHHHHHHHHH T ss_conf 72878999999998 No 203 >TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188 This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. . Probab=23.18 E-value=59 Score=14.10 Aligned_cols=121 Identities=15% Similarity=0.076 Sum_probs=72.4 Q ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHH---HHHHH---HCCCCCCCEEE------------------ Q ss_conf 6667899822312578899985158717876315642011---00133---10373341440------------------ Q gi|254781011|r 76 ESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ---KSQIE---GHLFKGARVLV------------------ 131 (228) Q Consensus 76 ~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~---~~~iE---G~~~~g~~vli------------------ 131 (228) ++=|+++=++|++|-+==++|..=+.+. +|+-|===|- +-.++ ..|.+||+||+ T Consensus 27 p~GdVli~V~YSs~NYKDALA~tg~g~v--~R~yP~~PGID~aG~Vv~S~dp~F~~GD~VivTGyglG~~H~GGysqyaR 104 (330) T TIGR02823 27 PEGDVLIKVAYSSLNYKDALAITGKGGV--VRSYPMIPGIDLAGTVVSSEDPRFRPGDEVIVTGYGLGVSHDGGYSQYAR 104 (330) T ss_pred CCCCEEEEEEECCCCHHHHHEECCCCCE--EEECCCCCCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEEEE T ss_conf 8997399999868763033101387976--88778768817546898448877578871899740245651576223567 Q ss_pred --------------HHHHH---HHHHHHHHHHHHHHHCC-CEEEEEEEEEECCCCHH----HHHHHHHCCCEEEEECCHH Q ss_conf --------------87887---32236999999998659-87856888874176324----8999997798099963299 Q gi|254781011|r 132 --------------IEDLV---TLGNSMFEFVKVIRDSG-GIIQDGIGLFFYDIFPE----VPARFRENNIKLHYLATWN 189 (228) Q Consensus 132 --------------VDDvi---TtG~S~~~~i~~l~~~g-~~V~~~~vii~~~~~~~----~~~~l~~~gi~~~sl~t~~ 189 (228) .-+-+ |.|=|+-=+|.+|+++| .....-=|++. +-.-+ |-.-|++.|++++..+-=. T Consensus 105 Vp~dWlVpLP~glsl~eAM~~GTAGfTAaL~V~aLe~~Gl~~P~~GpVlVT-GAtGGVGS~Av~~L~~lGY~V~A~tGk~ 183 (330) T TIGR02823 105 VPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLLTPEDGPVLVT-GATGGVGSLAVAILSKLGYEVVASTGKA 183 (330) T ss_pred ECHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE-CCCCCHHHHHHHHHHHCCCEEEEEECCH T ss_conf 332310158898898899986007789999999999726888888878870-6778778999999983797699973783 Q ss_pred HHH-HHHHHCC Q ss_conf 999-9999888 Q gi|254781011|r 190 DIL-TIAEKLK 199 (228) Q Consensus 190 ~il-~~l~~~~ 199 (228) +-- ++|++.| T Consensus 184 ~~~~~yL~~LG 194 (330) T TIGR02823 184 EEEVEYLKELG 194 (330) T ss_pred HHHHHHHHHCC T ss_conf 77889998658 No 204 >pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor. Probab=23.16 E-value=57 Score=14.17 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=4.4 Q ss_pred CCEEEEECCH Q ss_conf 9809996329 Q gi|254781011|r 179 NIKLHYLATW 188 (228) Q Consensus 179 gi~~~sl~t~ 188 (228) .|-+||++.| T Consensus 190 DivvhS~TKy 199 (381) T pfam01053 190 DIVVHSATKY 199 (381) T ss_pred CEEEEECCCC T ss_conf 7799753430 No 205 >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] Probab=23.14 E-value=55 Score=14.27 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=52.0 Q ss_pred CCEEEHHHHHHHHHHHHHHH-HHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCCCCCH Q ss_conf 41440878873223699999-9998659878568888741763248999997798099963--29999999998889998 Q gi|254781011|r 127 ARVLVIEDLVTLGNSMFEFV-KVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLA--TWNDILTIAEKLKIFNH 203 (228) Q Consensus 127 ~~vliVDDviTtG~S~~~~i-~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~--t~~~il~~l~~~~~I~~ 203 (228) .-++.|+++..|||..+.+. +.|--....++|-+-++. ....-.+.+++.||+...+. .+.++++.... ..+ T Consensus 130 PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~--~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~---~t~ 204 (317) T COG0616 130 PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVIS--GAPNFEELLEKLGVEKEVITAGEYKDILSPFRP---LTE 204 (317) T ss_pred CEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCCCCEEE--ECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCC---CCH T ss_conf 899998873202899998407879877986021350177--456689999865986034423242111453333---698 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999729977 Q gi|254781011|r 204 DVLEEVRCFLDNPMQW 219 (228) Q Consensus 204 ~~~~~I~~~l~dP~~W 219 (228) ++.+.+++..+.-..| T Consensus 205 e~~~~~q~~~~e~y~~ 220 (317) T COG0616 205 EEREILQKEIDETYDE 220 (317) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 206 >pfam10761 DUF2590 Protein of unknown function (DUF2590). This family of proteins has no known function. Probab=22.83 E-value=59 Score=14.06 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=17.8 Q ss_pred CCCCEEEECCCCCCEEEECCCCC Q ss_conf 78986731187264014262135 Q gi|254781011|r 30 PENPYHLTSGIVSPLYIDCRKLI 52 (228) Q Consensus 30 ~~g~F~L~SG~~Sp~Y~d~r~~~ 52 (228) .+|+|+|-+|. .|.+|+.|..+ T Consensus 6 ~dgD~~Ldag~-~P~l~~~r~sI 27 (103) T pfam10761 6 IDGDLVLDAGG-QPVLLSDRASI 27 (103) T ss_pred ECCCEEECCCC-CCEEECCHHHH T ss_conf 67998687999-91784171678 No 207 >PRK11778 putative periplasmic protease; Provisional Probab=22.77 E-value=17 Score=17.53 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=55.6 Q ss_pred EEEHHHHHHHHHHHHHH-HHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCH--HHHHHHHHHCCCCCHHH Q ss_conf 44087887322369999-9999865987856888874176324899999779809996329--99999999888999899 Q gi|254781011|r 129 VLVIEDLVTLGNSMFEF-VKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATW--NDILTIAEKLKIFNHDV 205 (228) Q Consensus 129 vliVDDviTtG~S~~~~-i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~--~~il~~l~~~~~I~~~~ 205 (228) ++-||.|..|||=...+ .+.|=.+...++|.+.++ ...+.-.+.++++||++..+.+- .+.+... +-.++++ T Consensus 137 tv~vd~VAASGGY~mAc~ADkIvA~P~tItGSIGVi--a~~Pnf~~lLkK~GI~~e~~taG~~K~tlt~f---~e~T~e~ 211 (317) T PRK11778 137 TVCVDKVAASGGYMMACVADKIIAAPFAIVGSIGVV--AQIPNFHRLLKKHDIDFELHTAGEYKRTLTLF---GENTEEG 211 (317) T ss_pred EEEEEEEECCCCEEEEECCCEEEECCCCEEEEEEEE--EECCCHHHHHHHCCCCEEEEECCCCCCCCCCC---CCCCHHH T ss_conf 999701302430226521887998786346532101--66658899999859965998145677777888---9999999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999729977 Q gi|254781011|r 206 LEEVRCFLDNPMQW 219 (228) Q Consensus 206 ~~~I~~~l~dP~~W 219 (228) .+.+++-+++-..+ T Consensus 212 r~k~q~~le~~h~~ 225 (317) T PRK11778 212 REKFREELEETHQL 225 (317) T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 No 208 >PRK13938 phosphoheptose isomerase; Provisional Probab=22.71 E-value=60 Score=14.04 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=47.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCC----------------CCCHH--- Q ss_conf 89999999999998664217566678998223125788999851587178763156----------------42011--- Q gi|254781011|r 55 VRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKS----------------KKHGQ--- 115 (228) Q Consensus 55 P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~----------------K~hG~--- 115 (228) ++....+++.+.+.+.+.. + =.++|- -|.=..|.-+|..+-..|...|+.- -|+|- T Consensus 28 ~~~i~~~~~~i~~~~~~g~---k-I~~cGN-GGSaa~A~Hfa~el~~~~~~~R~~lpaiaL~~n~s~lTAiaND~gye~v 102 (196) T PRK13938 28 LEAARAIGDRLIAGYRAGA---R-VFMCGN-GGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTV 102 (196) T ss_pred HHHHHHHHHHHHHHHHCCC---E-EEEEEC-CHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCCCHHHH T ss_conf 9999999999999998799---8-999968-6889999999999863335789984745447880788887624789999 Q ss_pred -HHHHHHCCCCCCCEEEHHHHHHHHHH--HHHHHHHHHHCCCEEEEE Q ss_conf -00133103733414408788732236--999999998659878568 Q gi|254781011|r 116 -KSQIEGHLFKGARVLVIEDLVTLGNS--MFEFVKVIRDSGGIIQDG 159 (228) Q Consensus 116 -~~~iEG~~~~g~~vliVDDviTtG~S--~~~~i~~l~~~g~~V~~~ 159 (228) .+|++..-.+|+=++.+ -|+|.| ++++++.-++.|..+++. T Consensus 103 F~rQl~al~~~gDvLi~i---StSGnS~NIi~A~~~Ak~~g~~~i~l 146 (196) T PRK13938 103 FARALEGSARPGDTLFAI---STSGNSMSVLRAAKTARELGVTVVAM 146 (196) T ss_pred HHHHHHHCCCCCCEEEEE---CCCCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 999999716899989997---79999999999999999879989999 No 209 >PRK06531 yajC preprotein translocase subunit YajC; Validated Probab=22.51 E-value=24 Score=16.63 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=18.3 Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCEE Q ss_conf 8717876315642011001331037334144 Q gi|254781011|r 100 NLPMIYVRKKSKKHGQKSQIEGHLFKGARVL 130 (228) Q Consensus 100 ~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vl 130 (228) .+-|+++|++.|..=+....-..+.+|++|+ T Consensus 14 ~~~ffmiRpQkK~qke~q~ml~~L~kGdeVv 44 (120) T PRK06531 14 GLIFFMQRQQKKQAQERQNQLNAIQKGDEVV 44 (120) T ss_pred HHHHHEECHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 9998603748899999999997257999899 No 210 >PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated Probab=22.39 E-value=61 Score=14.00 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=8.4 Q ss_pred CCCEEEEECCHHHHHHHH Q ss_conf 798099963299999999 Q gi|254781011|r 178 NNIKLHYLATWNDILTIA 195 (228) Q Consensus 178 ~gi~~~sl~t~~~il~~l 195 (228) +|++...+-+.+||-+.+ T Consensus 495 ~G~~~~~v~~~~eL~~al 512 (548) T PRK07449 495 YGLEYHRPETWAELEEAL 512 (548) T ss_pred CCCEEEEECCHHHHHHHH T ss_conf 799399859999999999 No 211 >TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding. Probab=22.16 E-value=57 Score=14.20 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=36.9 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH--H-HHCCCEEEEEC---CHHHHHHH Q ss_conf 33414408788732236999999998659878568888741763248999--9-97798099963---29999999 Q gi|254781011|r 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR--F-RENNIKLHYLA---TWNDILTI 194 (228) Q Consensus 125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~--l-~~~gi~~~sl~---t~~~il~~ 194 (228) |. .+++|-| .|||.+.++-++.-.++ ..+.|+ ++.--|...-|--. + .+.++|+..+= .++||..| T Consensus 203 P~-e~lLVlD-At~Gqna~~QA~~F~ea-v~ltGi-iLTKLDg~AKGG~~l~i~~~l~~Pv~~~G~GE~~dDL~~F 274 (284) T TIGR00064 203 PD-EVLLVLD-ATTGQNALEQAKVFNEA-VGLTGI-ILTKLDGTAKGGIILAIAYELKLPVKFIGVGEKIDDLAPF 274 (284) T ss_pred CC-EEEEEEH-HHHHHHHHHHHHHHHHH-CCCCEE-EEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHCCC T ss_conf 75-5754220-22203089999998654-068858-9963468803789998899857976998548873320147 No 212 >pfam01012 ETF Electron transfer flavoprotein domain. This family includes the homologous domain shared between the alpha and beta subunits of the electron transfer flavoprotein. Probab=22.16 E-value=61 Score=13.97 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEE-CCCHHHHHHHHHHHCCCCEE Q ss_conf 99999986642175666789982-23125788999851587178 Q gi|254781011|r 62 MDLTAKTVLRNIGFESIDIIAGG-ETAGIPFATLLAERLNLPMI 104 (228) Q Consensus 62 ~~~~~~~i~~~~~~~~~d~I~G~-a~~Gip~a~~iA~~l~~p~~ 104 (228) .+.+++.+.+ .++|.|+.. ...|=-++..+|.+|+.|++ T Consensus 76 a~~l~~~i~~----~~~~~Vl~~~s~~g~~~~~rlA~~L~~~~v 115 (161) T pfam01012 76 AAALAALIKK----EGPDLVLAGATSIGKDLAPRLAALLGAPLI 115 (161) T ss_pred HHHHHHHHHC----CCCCEEEECCHHHHHHHHHHHHHHHCCCCC T ss_conf 9999997541----399799970407876146999999599861 No 213 >PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Probab=22.03 E-value=62 Score=13.96 Aligned_cols=61 Identities=13% Similarity=0.075 Sum_probs=40.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC-----CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHC Q ss_conf 87322369999999986598785688887417-----63248999997798099963299999999988 Q gi|254781011|r 135 LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD-----IFPEVPARFRENNIKLHYLATWNDILTIAEKL 198 (228) Q Consensus 135 viTtG~S~~~~i~~l~~~g~~V~~~~vii~~~-----~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~ 198 (228) |+.-.|-...++++.+-+|...++++|=+.-+ +.+...+--+++|++ +++++||++|-.+. T Consensus 148 vl~R~GHTEasVdLa~lAGl~P~avicEil~~dG~ma~~~~l~~fA~~h~l~---~isi~dli~yR~~~ 213 (218) T PRK00910 148 VLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGKLHNMP---VLTIEDMVMYRNQF 213 (218) T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCC---EEEHHHHHHHHHHH T ss_conf 8646876999999999829997599999835999826779999999982997---88899999999970 No 214 >cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G Probab=21.95 E-value=62 Score=13.94 Aligned_cols=43 Identities=7% Similarity=0.200 Sum_probs=31.0 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCHH-HHHHHHHHHCCCCEEEEECC Q ss_conf 9999998664217566678998223125-78899985158717876315 Q gi|254781011|r 62 MDLTAKTVLRNIGFESIDIIAGGETAGI-PFATLLAERLNLPMIYVRKK 109 (228) Q Consensus 62 ~~~~~~~i~~~~~~~~~d~I~G~a~~Gi-p~a~~iA~~l~~p~~~vRK~ 109 (228) ...+|+++.+ ++-+|+||..... .....++..+++|++++|.+ T Consensus 52 ~~~~C~l~~~-----GV~AifGp~~~~s~~~vqSic~al~iPhi~~~~~ 95 (363) T cd06381 52 VQEACDLMNQ-----GILALVTSTGCASAIALQSLTDAMHIPHLFIQRG 95 (363) T ss_pred HHHHHHHHHC-----CCEEEECCCCHHHHHHHHHHHCCCCCCCEEEECC T ss_conf 9999998744-----8169987886668999998751578872786326 No 215 >TIGR00739 yajC preprotein translocase, YajC subunit; InterPro: IPR003849 This entry describes proteins of unknown function.. Probab=21.86 E-value=21 Score=17.06 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=18.0 Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEE Q ss_conf 78763156420110013310373341440 Q gi|254781011|r 103 MIYVRKKSKKHGQKSQIEGHLFKGARVLV 131 (228) Q Consensus 103 ~~~vRK~~K~hG~~~~iEG~~~~g~~vli 131 (228) |+..|++.|..=.++..--++.+|++|+. T Consensus 18 Fl~~RPQ~K~~k~~~kl~~~L~KGd~V~T 46 (86) T TIGR00739 18 FLIIRPQRKRRKAHKKLIESLKKGDKVLT 46 (86) T ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 97049779888988888852799778998 No 216 >CHL00189 infB translation initiation factor 2; Provisional Probab=21.72 E-value=63 Score=13.92 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=51.0 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE---CCCCHHHHHH---HHHCCCEEEEECCHHHHHHHHHHC Q ss_conf 3341440878873223699999999865987856888874---1763248999---997798099963299999999988 Q gi|254781011|r 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF---YDIFPEVPAR---FRENNIKLHYLATWNDILTIAEKL 198 (228) Q Consensus 125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~---~~~~~~~~~~---l~~~gi~~~sl~t~~~il~~l~~~ 198 (228) .|.++.-+| |-|. +|...+|..|++|.++++++. -+..+...|. .+..|+++.--++=-|. . T Consensus 321 ~~~~ITFlD---TPGH---eAFt~MRaRGA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDk------p 388 (770) T CHL00189 321 QNQKIVFLD---TPGH---EAFSSMRSRGANVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDK------E 388 (770) T ss_pred CCCEEEEEC---CCCH---HHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC------C T ss_conf 897589955---9946---889999862786666799999657885672799999998769988999877458------9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 8999899999999997299778 Q gi|254781011|r 199 KIFNHDVLEEVRCFLDNPMQWS 220 (228) Q Consensus 199 ~~I~~~~~~~I~~~l~dP~~W~ 220 (228) +.=.+..+..|.+|---|++|+ T Consensus 389 ~an~~rVk~eL~e~gli~EewG 410 (770) T CHL00189 389 NANIDRVKQELSKYNLISEKWG 410 (770) T ss_pred CCCHHHHHHHHHHCCCCHHHCC T ss_conf 9885789999998695522237 No 217 >cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a Probab=21.52 E-value=63 Score=13.89 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=25.1 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCHHH-HHHHHHHHCCCCEEEEE Q ss_conf 99999986642175666789982231257-88999851587178763 Q gi|254781011|r 62 MDLTAKTVLRNIGFESIDIIAGGETAGIP-FATLLAERLNLPMIYVR 107 (228) Q Consensus 62 ~~~~~~~i~~~~~~~~~d~I~G~a~~Gip-~a~~iA~~l~~p~~~vR 107 (228) ...+|+++.. ++-+|+||...... +-..++..+++|+++++ T Consensus 52 ~k~~C~ll~~-----GV~AIfGP~s~~sa~~v~Sicdal~IPhi~~~ 93 (400) T cd06391 52 VQEACELMNQ-----GILALVSSIGCTSAGSLQSLADAMHIPHLFIQ 93 (400) T ss_pred HHHHHHHHHC-----CCEEEECCCCHHHHHHHHHHHCCCCCCCEEEC T ss_conf 9999998743-----94699999975589999987446889807632 No 218 >cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b Probab=21.47 E-value=63 Score=13.88 Aligned_cols=90 Identities=10% Similarity=0.010 Sum_probs=35.3 Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 66789982231257889998515871787631564201100133103733414408788732236999999998659878 Q gi|254781011|r 77 SIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 (228) Q Consensus 77 ~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V 156 (228) ++|.+.=.+...-..........++|++++-.. . ..+-..+.+|+.- +...+++.|.+.|.+- T Consensus 56 ~vdGiI~~~~~~~~~~~~~~~~~~iPvV~i~~~--~-----------~~~~~~V~~Dn~~----~~~~a~~~L~~~G~~~ 118 (264) T cd01574 56 RVDGVIVNAPLDDADAALAAAPADVPVVFVDGS--P-----------SPRVSTVSVDQEG----GARLATEHLLELGHRT 118 (264) T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEECCC--C-----------CCCCCEEEECHHH----HHHHHHHHHHHCCCCC T ss_conf 999999916889969999998589968998667--9-----------9999889978899----9999999999849982 Q ss_pred EEEEEE-----EECCCCHHHHHHHHHCCCEEE Q ss_conf 568888-----741763248999997798099 Q gi|254781011|r 157 QDGIGL-----FFYDIFPEVPARFRENNIKLH 183 (228) Q Consensus 157 ~~~~vi-----i~~~~~~~~~~~l~~~gi~~~ 183 (228) .+.+.- ...+|.++-.+.+.++|++.. T Consensus 119 i~~i~~~~~~~~~~~R~~G~~~al~~~~i~~~ 150 (264) T cd01574 119 IAHVAGPEEWLSARARLAGWRAALEAAGIAPP 150 (264) T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC T ss_conf 73258997775799999999999998698974 No 219 >PRK04004 translation initiation factor IF-2; Validated Probab=21.44 E-value=63 Score=13.88 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=33.1 Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE-----------------------EEEE--ECCCCHHHHHHHHHCCCEEE Q ss_conf 4408788732236999999998659878568-----------------------8887--41763248999997798099 Q gi|254781011|r 129 VLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG-----------------------IGLF--FYDIFPEVPARFRENNIKLH 183 (228) Q Consensus 129 vliVDDviTtG~S~~~~i~~l~~~g~~V~~~-----------------------~vii--~~~~~~~~~~~l~~~gi~~~ 183 (228) |+|=-|+ -||+....+.|++.+..|... .+|+ +......+++..++.||++. T Consensus 355 vIIKADv---~GSlEAl~~~L~~~~I~I~~a~VG~ItesDV~lA~as~~~~~~~avIlgFNVk~~~~a~~~Ae~~gV~I~ 431 (592) T PRK04004 355 VIVKADT---LGSLEALVNELRKQGIPIRKADVGDVSKRDVIEASTVREKDPLYGVILAFNVKVLPDAEEEAESSDVKIF 431 (592) T ss_pred EEEEECC---CCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEE T ss_conf 7999547---6749999999974697579840688664246672431255766518999548899889999997497699 Q ss_pred EECCHHHHHHH Q ss_conf 96329999999 Q gi|254781011|r 184 YLATWNDILTI 194 (228) Q Consensus 184 sl~t~~~il~~ 194 (228) +---+-+|++- T Consensus 432 ~~~IIY~LiDd 442 (592) T PRK04004 432 EGDVIYQLVED 442 (592) T ss_pred EECHHHHHHHH T ss_conf 80748768999 No 220 >pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo. Probab=21.42 E-value=63 Score=13.88 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=39.2 Q ss_pred HHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 97798099963299999999988899989999999999729977886098 Q gi|254781011|r 176 RENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSKKNGG 225 (228) Q Consensus 176 ~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~~~g~ 225 (228) .+.|+++.-++|=.|-++.|++..-+.++..+.|.+|+. ..-=+||- T Consensus 212 ~NLGiPIvVV~tKsD~me~LEKe~dy~dEhFDfIqq~LR---~fCLqyGA 258 (490) T pfam05783 212 HNLGIPVVVVCTKCDAMSVLEKEHDYRDEHFDFIQSHIR---RFCLQYGA 258 (490) T ss_pred CCCCCCEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHCCC T ss_conf 047987799994641888876512620677899999999---99986196 No 221 >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. Probab=21.42 E-value=47 Score=14.71 Aligned_cols=43 Identities=9% Similarity=-0.058 Sum_probs=25.0 Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE Q ss_conf 31037334144087887322369999999986598785688887 Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228) Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228) -+....|.+| |||||+-.+.-..+..+.|.....-.+++-|=+ T Consensus 79 aa~a~aG~nv-IvD~v~~~~~~l~d~~~~L~g~~v~~VGV~C~l 121 (175) T cd00227 79 AAMARAGANV-IADDVFLGRAALQDCWRSFVGLDVLWVGVRCPG 121 (175) T ss_pred HHHHHCCCCE-EEEEEECCCHHHHHHHHHHCCCCEEEEEEECCH T ss_conf 9999779988-986312380889999998579927999987899 No 222 >PRK13222 phosphoglycolate phosphatase; Provisional Probab=21.35 E-value=64 Score=13.87 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=31.2 Q ss_pred CCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHH Q ss_conf 3414408788732236999999998659878568888741763248999997798099963299999999 Q gi|254781011|r 126 GARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIA 195 (228) Q Consensus 126 g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l 195 (228) -++|++|+|-.+ -+.+-+++|..++++ .++ +. ..+.++..+=. +-+-++.||++.| T Consensus 166 p~e~l~VGDs~~-------Di~aA~~aG~~~i~v----~~G-~~-~~~~l~~~~ad-~vi~~~~eL~~~L 221 (228) T PRK13222 166 PEQMLFVGDSRN-------DIQAAKAAGCPSVGV----TYG-YN-YGEDIALSEPD-VVIDHFAELLPAL 221 (228) T ss_pred CCCEEEEECCHH-------HHHHHHHCCCEEEEE----CCC-CC-CHHHHHHCCCC-EEECCHHHHHHHH T ss_conf 343489806888-------999999969949998----789-99-97789768999-9989999999985 No 223 >cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act Probab=21.30 E-value=64 Score=13.86 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=23.2 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCC--HHHHHHHHHHHCCCCEEEEECC Q ss_conf 9999986642175666789982231--2578899985158717876315 Q gi|254781011|r 63 DLTAKTVLRNIGFESIDIIAGGETA--GIPFATLLAERLNLPMIYVRKK 109 (228) Q Consensus 63 ~~~~~~i~~~~~~~~~d~I~G~a~~--Gip~a~~iA~~l~~p~~~vRK~ 109 (228) +.+|+++.+ ++-+|+||... .-.+.+.++..+++|.+..|.+ T Consensus 56 kkvC~ll~~-----GV~AIFGPss~~~s~~~v~siC~al~IPhi~~~~~ 99 (333) T cd06394 56 DTMCQILPK-----GVVSVLGPSSSPASSSIVSHICGEKEIPHFKVGPE 99 (333) T ss_pred HHHHHHHHH-----CCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCHH T ss_conf 999987863-----85799899996657999999844679980861521 No 224 >TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription. Probab=21.13 E-value=64 Score=13.84 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=52.8 Q ss_pred CHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE------E Q ss_conf 9789999999999865976820789867311872640142621357989999999999998664217566678------9 Q gi|254781011|r 8 QQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDI------I 81 (228) Q Consensus 8 ~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~------I 81 (228) +++=|=||-..+|+|.+--+ .| +..+| +|.|=| ++-..+.=--.+++|..+..+|+ | T Consensus 342 NEKRMLQEAVDALfDNgRR~----kP-V~G~~--------nRpLKS----LSdmLKGKQGRFRQNLLGKRVDYSGRSVIV 404 (1552) T TIGR02386 342 NEKRMLQEAVDALFDNGRRG----KP-VVGKN--------NRPLKS----LSDMLKGKQGRFRQNLLGKRVDYSGRSVIV 404 (1552) T ss_pred CCCHHHHHHHHHHHCCCCCC----CC-CCCCC--------CCCCCC----HHHHHCCCCCCHHHHHCCCEEEECCCEEEE T ss_conf 55335678888874478888----63-10788--------977543----244412667730032068605415527899 Q ss_pred EEECCC----HHHHHHHHHHHCCCCEEEEECCCC Q ss_conf 982231----257889998515871787631564 Q gi|254781011|r 82 AGGETA----GIPFATLLAERLNLPMIYVRKKSK 111 (228) Q Consensus 82 ~G~a~~----Gip~a~~iA~~l~~p~~~vRK~~K 111 (228) +||+++ |+|== .|..|=+||++-|=..| T Consensus 405 VGPeLKm~QcGLPk~--MALeLFKPFIi~~L~~K 436 (1552) T TIGR02386 405 VGPELKMYQCGLPKK--MALELFKPFIIKRLVDK 436 (1552) T ss_pred ECCCCCCCCCCCCHH--HHHHHCCCEEEHHHHHH T ss_conf 889774113688279--88751673023222221 No 225 >PRK05585 yajC preprotein translocase subunit YajC; Validated Probab=21.02 E-value=37 Score=15.42 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=24.6 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHH Q ss_conf 5788999851587178763156420110013310373341440878873223 Q gi|254781011|r 89 IPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGN 140 (228) Q Consensus 89 ip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~ 140 (228) +|+...++--+ |.++|++.|..=+.+.....+.+|++| +|+|| T Consensus 23 l~~ili~~vfY---fl~iRPQ~Kr~ke~~~m~~~L~~Gd~V------vT~gG 65 (107) T PRK05585 23 LPLVVFFAIFY---FLIIRPQQKRQKEHKKMLSSLAKGDEV------VTNGG 65 (107) T ss_pred HHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHCCCCCEE------EECCC T ss_conf 99999999999---874264889999999999845899999------98998 No 226 >TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase; InterPro: IPR004446 In a number of species, including Escherichia coli, the histidine biosynthetic enzymes imidazole glycerol phosphate dehydratase and histidinol phosphatase are found together in the bifunctional protein HisB. This family represents a protein closely related to the histidinol phosphatase domain of HisB. The protein is found both in Helicobacter pylori, for which the histidine biosynthetic pathway appears to be absent, and in species that also have a bifunctional HisB protein.. Probab=21.01 E-value=65 Score=13.82 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=5.9 Q ss_pred CCCCCHHHHHHHHHHH Q ss_conf 8899989999999999 Q gi|254781011|r 198 LKIFNHDVLEEVRCFL 213 (228) Q Consensus 198 ~~~I~~~~~~~I~~~l 213 (228) +|++++++.+.+-+|+ T Consensus 56 RG~ft~~~F~~LT~~~ 71 (178) T TIGR00213 56 RGYFTEKQFEQLTEWL 71 (178) T ss_pred CCCCCHHHHHHHHHHH T ss_conf 3542778899999999 No 227 >PRK12463 chorismate synthase; Reviewed Probab=20.91 E-value=65 Score=13.81 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=5.8 Q ss_pred HHHCCCCCCCEE Q ss_conf 331037334144 Q gi|254781011|r 119 IEGHLFKGARVL 130 (228) Q Consensus 119 iEG~~~~g~~vl 130 (228) |+|-+.+|+.++ T Consensus 296 I~GGISnG~pIv 307 (390) T PRK12463 296 LEGGMTTGMPIV 307 (390) T ss_pred EECCCCCCCCEE T ss_conf 314555898679 No 228 >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed Probab=20.66 E-value=66 Score=13.77 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=35.1 Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHH-CCCEEEEECC Q ss_conf 33414408788732236999999998659878568888741763248999997-7980999632 Q gi|254781011|r 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRE-NNIKLHYLAT 187 (228) Q Consensus 125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~-~gi~~~sl~t 187 (228) +|++++ |+-.||+...++-.+...|++ +.|++|. ....+.|.+ .+.+.+++-. T Consensus 331 ~~~~~~----vlGaGGaarAi~~~l~~~g~~----i~I~nRt--~~ka~~La~~~~~~~~~~~~ 384 (477) T PRK09310 331 NNQHVA----IVGAGGAAKAIATTLARQGAE----LLIFNRT--KAHAEALASRCQGKAFPLGS 384 (477) T ss_pred CCCEEE----EECCCHHHHHHHHHHHHCCCE----EEEEECC--HHHHHHHHHHCCCCEEEHHH T ss_conf 446224----424750799999999867997----9999799--89999999874886753566 No 229 >PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated Probab=20.58 E-value=66 Score=13.76 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=26.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHC--CCCCCCEEEEECCCHH-----HHHHHHHHHCCCCEEEEE Q ss_conf 35798999999999999866421--7566678998223125-----788999851587178763 Q gi|254781011|r 51 LISFVRARSMIMDLTAKTVLRNI--GFESIDIIAGGETAGI-----PFATLLAERLNLPMIYVR 107 (228) Q Consensus 51 ~~s~P~~~~~i~~~~~~~i~~~~--~~~~~d~I~G~a~~Gi-----p~a~~iA~~l~~p~~~vR 107 (228) +..+|+..+.-.++..+.-.... ....+|.|+=..+||= -+.+.+.....+|+...| T Consensus 5 ~~~~~~q~~ea~~~~~~~~~~~~~~~~~~~~~Ivi~GmGGS~i~Gdv~~~l~~~~~~iPv~v~~ 68 (328) T PRK08674 5 YLNWPKQFEEAWEFAYRYVLEGIEVEIEPYDNIVISGMGGSGIGGDLLRSLLLDEWKKPVFVVR 68 (328) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEC T ss_conf 8857999999997787526443110147657299995756489999999998447998679855 No 230 >TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit. Probab=20.56 E-value=66 Score=13.76 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=79.2 Q ss_pred HHHHHCCCEEE-------ECC-CCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCH Q ss_conf 99986597682-------078-986731187264014262135798999999999999866421756667899822-312 Q gi|254781011|r 18 KMLFEIKAVNF-------SPE-NPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGE-TAG 88 (228) Q Consensus 18 ~~L~~~~ai~~-------~~~-g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a-~~G 88 (228) +-|+|+|+ .| +|. ++|...-=+.-=|-+|+.+++.. ++.--++ +..+..+.+ ++ .-||.= --+ T Consensus 5 k~LleaGv-HFGHqtRRWNPkMk~fIf~eRKngihIIDL~kT~~~---~~~Ay~~-v~~~~~~gg--~i-LFVGTKNkQA 76 (227) T TIGR01011 5 KDLLEAGV-HFGHQTRRWNPKMKPFIFGERKNGIHIIDLQKTLQL---LEEAYNF-VREVVANGG--KI-LFVGTKNKQA 76 (227) T ss_pred HHHHHCCC-CCCCEECCCCCCCCCCCCCCCCCCCEEECHHHHHHH---HHHHHHH-HHHHHHCCC--EE-EEEECHHHHH T ss_conf 76863885-437542236888988553201278512257899999---9999999-999998199--58-8851658899 Q ss_pred HHHHHHHHHHCCCCEEEEECCC----------CCCHHHHHHHHC--------CCCCCCEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 5788999851587178763156----------420110013310--------3733414408788732236999999998 Q gi|254781011|r 89 IPFATLLAERLNLPMIYVRKKS----------KKHGQKSQIEGH--------LFKGARVLVIEDLVTLGNSMFEFVKVIR 150 (228) Q Consensus 89 ip~a~~iA~~l~~p~~~vRK~~----------K~hG~~~~iEG~--------~~~g~~vliVDDviTtG~S~~~~i~~l~ 150 (228) =-+-...|.+-|.||+=-|.=. |.=-+-+.+|-. +.+.+...+ - --=.=+.....-+| T Consensus 77 ~~~i~~~A~r~g~~YVn~RWLGGMLTNf~TirkSi~kL~~lE~~~~~g~~~~LtKKE~~~L-~---Re~~KL~k~LgGIk 152 (227) T TIGR01011 77 KEIIKEEAERCGMFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDVLTKKEILML-S---REKEKLEKNLGGIK 152 (227) T ss_pred HHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-H---HHHHHHHHHHHHHH T ss_conf 9999999987489621133346400247999999999999998776133124770007767-8---99999865530025 Q ss_pred HCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHH Q ss_conf 659878568888741763248999997798099963299 Q gi|254781011|r 151 DSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWN 189 (228) Q Consensus 151 ~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~ 189 (228) +.+ ..=++++|+|-.++.-|-..-.+.|||+.++++-+ T Consensus 153 ~M~-~lPd~l~viD~~~E~IAv~EA~kLgIPvvA~vDTN 190 (227) T TIGR01011 153 DMK-KLPDLLFVIDPRKEKIAVAEARKLGIPVVAIVDTN 190 (227) T ss_pred HHH-CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCC T ss_conf 453-16970899748210689999733799789870478 No 231 >PRK03971 putative deoxyhypusine synthase; Provisional Probab=20.47 E-value=33 Score=15.69 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=5.1 Q ss_pred CCCCEEEHHHHH Q ss_conf 334144087887 Q gi|254781011|r 125 KGARVLVIEDLV 136 (228) Q Consensus 125 ~g~~vliVDDvi 136 (228) ++++-+-.||.+ T Consensus 142 p~d~y~~~E~~~ 153 (334) T PRK03971 142 PNDRYIEFEEYM 153 (334) T ss_pred CHHHHHHHHHHH T ss_conf 707789999999 No 232 >TIGR01364 serC_1 phosphoserine aminotransferase; InterPro: IPR003248 Phosphoserine aminotransferases (2.6.1.52 from EC) catalyse the conversion of O-phospho-L-serine and oxoglutarate to 3-phosphonooxypyruvate and L-glutamate in the major phosphorylated serine biosynthesis pathway. In bacteria it is also equired for the biosynthesis of pyridoxine. The enzyme requires pyridoxal phosphate as a cofactor, and is part of the aminotransferase class-V family.; GO: 0006564 L-serine biosynthetic process. Probab=20.37 E-value=25 Score=16.49 Aligned_cols=37 Identities=3% Similarity=0.053 Sum_probs=18.5 Q ss_pred EEEEEEEEC-CCCHHHHH-HHHHCCCEEE-EECCHHHHHH Q ss_conf 568888741-76324899-9997798099-9632999999 Q gi|254781011|r 157 QDGIGLFFY-DIFPEVPA-RFRENNIKLH-YLATWNDILT 193 (228) Q Consensus 157 ~~~~vii~~-~~~~~~~~-~l~~~gi~~~-sl~t~~~il~ 193 (228) .|+.|||.| |.-..+.. .|.+.|||.. ++++|....+ T Consensus 219 aG~TvVIvR~DLLgr~~~~~LH~L~vP~~P~~~~Y~~~~~ 258 (391) T TIGR01364 219 AGLTVVIVRKDLLGRASDAELHKLGVPITPSMLNYKIHAE 258 (391) T ss_pred CEEEEEEECCHHHCCCCCCCHHHCCCCCCCCCCCHHHHHH T ss_conf 2268999811441567623020166659784132189886 No 233 >PRK07451 translation initiation factor Sui1; Validated Probab=20.35 E-value=67 Score=13.73 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=47.7 Q ss_pred EEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH---CCCEEEEEEEEEECCCCHHHHHHHHHCCC Q ss_conf 876315642011001331037334144087887322369999999986---59878568888741763248999997798 Q gi|254781011|r 104 IYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRD---SGGIIQDGIGLFFYDIFPEVPARFRENNI 180 (228) Q Consensus 104 ~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~---~g~~V~~~~vii~~~~~~~~~~~l~~~gi 180 (228) +-+|.+.|+ ..|+.|.+|+-+.-+...+.+..+.|+. .|+.|.+-...+.=|..+...+.|++.|+ T Consensus 37 lri~~e~KG-----------R~GK~VTvI~G~~~~~~~lk~LaK~LK~~cG~GGtvKdg~IeiQGD~Rdkv~~~L~~~Gy 105 (112) T PRK07451 37 LRVQATRSG-----------RKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKDNTIEIQGDHRQKILEILIKLGY 105 (112) T ss_pred EEEEEEECC-----------CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEECCEEEECCCHHHHHHHHHHHCCC T ss_conf 899986079-----------999858998699699999999999999973789506089899717479999999998799 Q ss_pred EEE Q ss_conf 099 Q gi|254781011|r 181 KLH 183 (228) Q Consensus 181 ~~~ 183 (228) ++- T Consensus 106 ~vK 108 (112) T PRK07451 106 KAK 108 (112) T ss_pred EEE T ss_conf 565 No 234 >TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829 Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis. Probab=20.19 E-value=33 Score=15.76 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=24.9 Q ss_pred HHHHHHCCCCCCCEEEEECCCH---HHHHHHHHHHCCCCEEEEEC Q ss_conf 9866421756667899822312---57889998515871787631 Q gi|254781011|r 67 KTVLRNIGFESIDIIAGGETAG---IPFATLLAERLNLPMIYVRK 108 (228) Q Consensus 67 ~~i~~~~~~~~~d~I~G~a~~G---ip~a~~iA~~l~~p~~~vRK 108 (228) +.+.+++.-..+|+++ |.|| +-.|.-++.+=++|.+=|-| T Consensus 96 d~~~~n~~~~GlDAlI--aIGGdGTL~~A~~l~~~GGl~vVGVPK 138 (339) T TIGR02483 96 DKIVANLKELGLDALI--AIGGDGTLGIARRLADKGGLPVVGVPK 138 (339) T ss_pred HHHHHHHHHCCCEEEE--EECCCCHHHHHHHHHHCCCCCEEEECC T ss_conf 8999989964981899--866872689999999658985474157 No 235 >COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion] Probab=20.13 E-value=67 Score=13.70 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=28.7 Q ss_pred HHHHHCCCCCCCEEEEECCC-HHHHHHHHHHHCCCCEEEEEC Q ss_conf 86642175666789982231-257889998515871787631 Q gi|254781011|r 68 TVLRNIGFESIDIIAGGETA-GIPFATLLAERLNLPMIYVRK 108 (228) Q Consensus 68 ~i~~~~~~~~~d~I~G~a~~-Gip~a~~iA~~l~~p~~~vRK 108 (228) .+.......++|+|.|+--| -+-.|=.+|.++++||+-+-- T Consensus 75 ~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsvPT 116 (360) T COG0371 75 RLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPFISVPT 116 (360) T ss_pred HHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEECCC T ss_conf 999870447999899956818999999999981999798057 No 236 >KOG0743 consensus Probab=20.01 E-value=68 Score=13.69 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=59.2 Q ss_pred ECCCCCCEEEEC----CCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-------CEEEEECCCH-HHHHHHHHHHCCCCEE Q ss_conf 118726401426----213579899999999999986642175666-------7899822312-5788999851587178 Q gi|254781011|r 37 TSGIVSPLYIDC----RKLISFVRARSMIMDLTAKTVLRNIGFESI-------DIIAGGETAG-IPFATLLAERLNLPMI 104 (228) Q Consensus 37 ~SG~~Sp~Y~d~----r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~-------d~I~G~a~~G-ip~a~~iA~~l~~p~~ 104 (228) .++.++++=++- ..+..+|+.-+.|.+-+.+.+...--+... =.+.|||-.| -.+-+++|..|+.... T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIy 264 (457) T KOG0743 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIY 264 (457) T ss_pred CCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCEE T ss_conf 57761256899998744201486678999999999972235788648450004120479999888999999720587367 Q ss_pred EE-ECCCCCCHH-HHHHHHCCCCCCCEEEHHHHHHH Q ss_conf 76-315642011-00133103733414408788732 Q gi|254781011|r 105 YV-RKKSKKHGQ-KSQIEGHLFKGARVLVIEDLVTL 138 (228) Q Consensus 105 ~v-RK~~K~hG~-~~~iEG~~~~g~~vliVDDviTt 138 (228) -. =.+.++... ++++ .-.+++.+|+|||+=.+ T Consensus 265 dLeLt~v~~n~dLr~LL--~~t~~kSIivIEDIDcs 298 (457) T KOG0743 265 DLELTEVKLDSDLRHLL--LATPNKSILLIEDIDCS 298 (457) T ss_pred EEEECCCCCCHHHHHHH--HHCCCCCEEEEEECCCC T ss_conf 74400236838999999--72899718999612432 Done!