Query gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 228
No_of_seqs 150 out of 1959
Neff 6.2
Searched_HMMs 23785
Date Tue May 31 23:30:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781011.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aee_A OPRT, oprtase, orotate 100.0 0 0 407.2 17.9 209 10-221 3-211 (211)
2 3m3h_A OPRT, oprtase, orotate 100.0 0 0 404.4 20.1 217 2-221 15-233 (234)
3 3dez_A OPRT, oprtase, orotate 100.0 0 0 396.9 20.0 211 8-221 33-243 (243)
4 2ps1_A Orotate phosphoribosylt 100.0 0 0 342.9 16.8 201 10-221 6-224 (226)
5 2wns_A Orotate phosphoribosylt 100.0 0 0 340.7 18.2 199 14-219 4-202 (205)
6 3n2l_A OPRT, oprtase, orotate 100.0 0 0 336.8 17.2 199 11-220 28-237 (238)
7 1lh0_A OMP synthase; loop clos 100.0 0 0 333.8 17.5 200 10-220 2-212 (213)
8 3mjd_A Orotate phosphoribosylt 100.0 0 0 338.0 14.0 194 15-221 25-232 (232)
9 2yzk_A OPRT, oprtase, orotate 100.0 6E-44 0 306.0 13.4 177 15-199 1-177 (178)
10 2p1z_A Phosphoribosyltransfera 100.0 1.8E-40 8.4E-45 283.3 9.9 169 13-191 7-177 (180)
11 1qb7_A APRT, adenine phosphori 100.0 1.4E-31 5.7E-36 225.4 3.9 155 38-195 34-212 (236)
12 2dy0_A APRT, adenine phosphori 100.0 2.3E-28 9.5E-33 204.4 11.4 153 26-189 22-188 (190)
13 1y0b_A Xanthine phosphoribosyl 99.9 2E-27 8.2E-32 198.3 11.9 162 14-191 5-184 (197)
14 1zn8_A APRT, adenine phosphori 99.9 1.4E-26 5.9E-31 192.8 12.0 164 14-189 3-180 (180)
15 1g2q_A Adenine phosphoribosylt 99.9 8.9E-27 3.8E-31 194.0 8.0 156 25-190 13-182 (187)
16 1l1q_A Adenine phosphoribosylt 99.9 1.2E-25 4.9E-30 186.8 11.7 152 25-187 11-179 (186)
17 1o57_A PUR operon repressor; p 99.9 4.3E-24 1.8E-28 176.6 6.2 146 32-189 94-256 (291)
18 1vch_A Phosphoribosyltransfera 99.8 4.4E-19 1.9E-23 143.9 10.2 125 34-167 18-161 (175)
19 1vdm_A Purine phosphoribosyltr 99.3 5.5E-12 2.3E-16 97.6 9.5 111 50-165 4-122 (153)
20 2h06_A Ribose-phosphate pyroph 99.1 1.6E-09 6.7E-14 81.6 11.4 103 78-183 164-269 (326)
21 1wd5_A Hypothetical protein TT 99.1 2.4E-10 1E-14 86.9 6.3 123 61-189 9-179 (208)
22 3dah_A Ribose-phosphate pyroph 99.0 3E-09 1.3E-13 79.7 11.1 150 13-182 114-271 (319)
23 1dku_A Protein (phosphoribosyl 99.0 2.5E-09 1E-13 80.3 10.5 154 13-181 115-271 (317)
24 2ji4_A Phosphoribosyl pyrophos 99.0 1.1E-08 4.5E-13 76.1 12.1 164 12-188 136-334 (379)
25 1hgx_A HGXPRTASE, hypoxanthine 98.9 3.6E-09 1.5E-13 79.3 8.6 125 41-166 3-135 (183)
26 3ohp_A Hypoxanthine phosphorib 98.9 6E-09 2.5E-13 77.8 9.2 115 50-165 7-130 (177)
27 3o7m_A Hypoxanthine phosphorib 98.8 1.6E-08 6.7E-13 75.0 8.9 113 51-165 12-133 (186)
28 1nul_A XPRT, xanthine-guanine 98.8 4.6E-09 1.9E-13 78.6 5.5 108 49-165 4-115 (152)
29 2geb_A Hypoxanthine-guanine ph 98.8 2.2E-08 9.3E-13 74.1 8.6 117 47-165 11-137 (185)
30 1u9y_A RPPK;, ribose-phosphate 98.8 2.9E-08 1.2E-12 73.3 9.3 112 65-182 146-260 (284)
31 1yfz_A Hypoxanthine-guanine ph 98.8 2.5E-08 1.1E-12 73.7 8.6 120 44-165 28-157 (205)
32 2jky_A Hypoxanthine-guanine ph 98.8 6E-10 2.5E-14 84.3 0.3 105 47-156 3-132 (213)
33 2ywu_A Hypoxanthine-guanine ph 98.8 4.9E-08 2E-12 71.9 10.0 113 50-164 12-133 (181)
34 3hvu_A Hypoxanthine phosphorib 98.7 8E-08 3.3E-12 70.5 9.2 115 49-165 32-155 (204)
35 1ufr_A TT1027, PYR mRNA-bindin 98.6 1.8E-07 7.4E-12 68.3 8.7 117 49-166 5-137 (181)
36 2jbh_A HHGP; glycosyltransfera 98.6 1.3E-07 5.4E-12 69.1 7.9 120 44-165 35-173 (225)
37 1ecf_A Glutamine phosphoribosy 98.6 2.6E-07 1.1E-11 67.2 8.3 161 56-217 273-486 (504)
38 1w30_A PYRR bifunctional prote 98.5 3.9E-07 1.6E-11 66.0 9.0 118 48-166 13-153 (201)
39 1tc1_A Protein (hypoxanthine p 98.5 4.3E-07 1.8E-11 65.7 8.7 115 49-164 9-141 (220)
40 1z7g_A HGPRT, HGPRTASE, hypoxa 98.5 8.1E-07 3.4E-11 63.9 9.7 141 23-165 4-165 (217)
41 1pzm_A HGPRT, hypoxanthine-gua 98.5 5.1E-07 2.1E-11 65.2 8.6 118 47-165 23-157 (211)
42 1a3c_A PYRR, pyrimidine operon 98.4 7.3E-07 3.1E-11 64.2 8.1 116 50-166 6-139 (181)
43 1fsg_A HGPRTASE, hypoxanthine- 98.4 7.8E-07 3.3E-11 64.0 6.7 115 49-165 47-181 (233)
44 1cjb_A Protein (hypoxanthine-g 98.3 1.4E-06 5.8E-11 62.4 6.3 122 41-164 32-175 (231)
45 1ao0_A Glutamine phosphoribosy 98.1 6.5E-06 2.7E-10 58.0 6.7 134 56-195 257-425 (459)
46 1dqn_A Guanine phosphoribosylt 98.0 4.6E-06 1.9E-10 59.0 5.1 107 50-159 34-151 (230)
47 1o5o_A Uracil phosphoribosyltr 96.4 0.0086 3.6E-07 37.7 6.6 100 80-184 85-193 (221)
48 2ehj_A Uracil phosphoribosyltr 96.0 0.051 2.1E-06 32.6 8.9 99 81-184 73-180 (208)
49 1v9s_A Uracil phosphoribosyltr 95.7 0.036 1.5E-06 33.6 7.0 100 80-185 72-181 (208)
50 1i5e_A Uracil phosphoribosyltr 95.6 0.028 1.2E-06 34.3 6.3 99 82-184 75-181 (209)
51 1bd3_D Uprtase, uracil phospho 95.4 0.075 3.2E-06 31.5 7.9 99 81-184 104-215 (243)
52 3dmp_A Uracil phosphoribosyltr 95.1 0.036 1.5E-06 33.6 5.6 100 81-184 81-188 (217)
53 1xtt_A Probable uracil phospho 94.1 0.037 1.5E-06 33.6 3.6 101 81-184 75-190 (216)
54 2e55_A Uracil phosphoribosyltr 92.8 0.13 5.3E-06 30.1 4.6 99 83-184 74-178 (208)
55 2dmz_A INAD-like protein; PDZ 70.3 2.4 0.0001 21.7 2.6 38 120-157 62-99 (129)
56 1wf8_A Neurabin-I; PDZ domain, 67.7 2.9 0.00012 21.2 2.6 38 120-157 56-93 (107)
57 3egg_C Spinophilin; PP1, serin 67.6 3.1 0.00013 21.0 2.8 54 103-158 112-165 (170)
58 2h2b_A Tight junction protein 66.2 3 0.00012 21.1 2.4 39 119-157 52-90 (107)
59 2dc2_A GOPC, golgi associated 66.1 3.5 0.00015 20.7 2.8 40 120-159 51-90 (103)
60 2ixd_A LMBE-related protein; h 65.2 7.4 0.00031 18.6 6.5 21 4-25 10-32 (242)
61 2awx_A Synapse associated prot 65.1 3.3 0.00014 20.9 2.5 38 120-157 49-86 (105)
62 3b76_A E3 ubiquitin-protein li 64.3 4.1 0.00017 20.2 2.9 38 120-157 69-106 (118)
63 2qg1_A Multiple PDZ domain pro 64.1 4.1 0.00017 20.2 2.8 38 120-157 45-82 (92)
64 1uew_A Membrane associated gua 64.0 3.8 0.00016 20.4 2.6 38 120-157 59-96 (114)
65 1kid_A Groel (HSP60 class); ch 63.9 7.8 0.00033 18.4 4.9 80 31-117 18-112 (203)
66 1t2m_A AF-6 protein; chromosom 63.7 3.5 0.00015 20.7 2.4 38 120-157 48-85 (101)
67 2yub_A LIMK-2, LIM domain kina 63.6 6.2 0.00026 19.1 3.6 57 100-157 42-98 (118)
68 2r4h_A Membrane-associated gua 61.5 4.4 0.00019 20.0 2.6 38 120-157 65-102 (112)
69 2djt_A Unnamed protein product 61.3 4.4 0.00019 20.0 2.6 38 120-157 54-91 (104)
70 2eno_A Synaptojanin-2-binding 61.2 3.8 0.00016 20.5 2.2 38 120-157 63-100 (120)
71 2fe5_A Presynaptic protein SAP 60.9 4.6 0.00019 19.9 2.6 38 120-157 49-86 (94)
72 1um7_A Synapse-associated prot 60.5 8.9 0.00037 18.0 4.1 55 120-179 55-109 (113)
73 2gzv_A PRKCA-binding protein; 60.1 4.4 0.00019 20.0 2.4 39 120-158 66-104 (114)
74 1uhp_A Hypothetical protein KI 60.0 4.4 0.00018 20.0 2.4 38 120-157 57-94 (107)
75 1mfg_A ERB-B2 interacting prot 59.9 5.6 0.00024 19.3 2.9 52 102-157 35-86 (95)
76 2jik_A Synaptojanin-2 binding 59.9 4.5 0.00019 20.0 2.4 39 120-158 53-91 (101)
77 2iwo_A Multiple PDZ domain pro 59.7 5.6 0.00023 19.3 2.9 38 120-157 69-106 (120)
78 1n7e_A AMPA receptor interacti 59.7 5.1 0.00021 19.6 2.6 38 120-157 46-83 (97)
79 1um1_A KIAA1849 protein, RSGI 59.6 4.2 0.00018 20.1 2.2 38 120-157 52-89 (110)
80 2jre_A C60-1 PDZ domain peptid 59.6 4.4 0.00019 20.0 2.3 38 120-157 60-97 (108)
81 2iwn_A Multiple PDZ domain pro 59.6 5 0.00021 19.7 2.6 38 120-157 49-86 (97)
82 1q7x_A PDZ2B domain of PTP-BAS 59.5 3.3 0.00014 20.8 1.7 46 119-167 57-102 (108)
83 1d5g_A Human phosphatase HPTP1 59.0 5 0.00021 19.7 2.5 38 120-157 49-86 (96)
84 2edv_A FERM and PDZ domain-con 58.9 4.8 0.0002 19.8 2.4 38 120-157 45-82 (96)
85 2fne_A Multiple PDZ domain pro 58.9 4.5 0.00019 20.0 2.2 38 120-157 69-106 (117)
86 2csj_A TJP2 protein; PDZ domai 58.4 5.6 0.00024 19.3 2.7 40 119-158 59-98 (117)
87 3e17_A Tight junction protein 58.4 5 0.00021 19.7 2.4 45 120-167 37-81 (88)
88 2byg_A Channel associated prot 58.4 5.3 0.00022 19.5 2.6 38 120-157 70-107 (117)
89 1ihj_A INAD; intermolecular di 58.0 6.5 0.00027 18.9 3.0 39 120-158 53-91 (98)
90 2dm8_A INAD-like protein; PDZ 57.8 5.4 0.00023 19.5 2.5 38 120-157 59-96 (116)
91 2dkr_A LIN-7 homolog B; LIN-7B 57.8 5.6 0.00024 19.3 2.6 38 120-157 46-83 (93)
92 1qav_A Alpha-1 syntrophin (res 57.4 5 0.00021 19.7 2.3 38 120-157 46-83 (90)
93 2kjd_A Sodium/hydrogen exchang 57.4 6 0.00025 19.1 2.7 41 121-163 49-89 (128)
94 2ehr_A INAD-like protein; PDZ 57.3 3.8 0.00016 20.4 1.7 39 120-158 66-104 (117)
95 1n7t_A 99-MER peptide of densi 57.3 5.5 0.00023 19.4 2.5 38 120-157 57-94 (103)
96 3hpk_A Protein interacting wit 57.2 5.6 0.00023 19.4 2.5 39 120-158 61-99 (125)
97 1va8_A Maguk P55 subfamily mem 56.7 5.5 0.00023 19.4 2.4 42 120-163 64-105 (113)
98 2g5m_B Neurabin-2; spinophilin 56.7 4.3 0.00018 20.1 1.8 38 120-157 51-88 (113)
99 2d92_A INAD-like protein; PDZ 56.0 7 0.0003 18.7 2.9 57 101-159 43-99 (108)
100 2vsp_A PDZ domain-containing p 55.9 5.7 0.00024 19.3 2.4 42 121-164 43-84 (91)
101 2jil_A GRIP1 protein, glutamat 55.5 5.7 0.00024 19.3 2.3 38 120-157 48-85 (97)
102 1kwa_A Hcask/LIN-2 protein; PD 55.3 7.3 0.00031 18.6 2.9 38 120-157 41-78 (88)
103 2dlu_A INAD-like protein; PDZ 55.1 5.9 0.00025 19.2 2.4 38 120-157 54-91 (111)
104 2db5_A INAD-like protein; PDZ 54.8 7.1 0.0003 18.7 2.7 38 120-157 70-108 (128)
105 2pa1_A PDZ and LIM domain prot 54.7 5.9 0.00025 19.2 2.3 38 120-157 41-78 (87)
106 3cyy_A Tight junction protein 54.5 5.9 0.00025 19.2 2.3 38 120-157 39-76 (92)
107 2krg_A Na(+)/H(+) exchange reg 54.4 3.6 0.00015 20.5 1.2 38 120-158 49-86 (216)
108 2i1n_A Discs, large homolog 3; 54.2 6.8 0.00029 18.8 2.5 38 120-157 50-87 (102)
109 2fcf_A Multiple PDZ domain pro 54.2 5 0.00021 19.7 1.9 38 120-157 55-92 (103)
110 3o46_A Maguk P55 subfamily mem 53.5 6.9 0.00029 18.8 2.5 38 120-157 44-81 (93)
111 1wf7_A Enigma homologue protei 53.3 6.9 0.00029 18.7 2.5 37 121-157 45-81 (103)
112 2eei_A PDZ domain-containing p 53.2 5.4 0.00023 19.4 1.9 35 123-157 50-84 (106)
113 2eeg_A PDZ and LIM domain prot 53.1 6.5 0.00027 18.9 2.3 37 121-157 48-84 (94)
114 2jxo_A Ezrin-radixin-moesin-bi 53.0 6.3 0.00027 19.0 2.2 38 121-158 49-86 (98)
115 1wha_A KIAA0147 protein, scrib 53.0 4.7 0.0002 19.8 1.6 38 120-157 54-91 (105)
116 2iwq_A Multiple PDZ domain pro 52.9 5.8 0.00024 19.2 2.0 38 120-157 75-112 (123)
117 1srv_A Protein (groel (HSP60 c 52.7 12 0.0005 17.2 4.7 78 34-117 2-94 (145)
118 2daz_A INAD-like protein; PDZ 52.5 7.2 0.0003 18.6 2.5 38 120-157 67-104 (124)
119 2edz_A PDZ domain-containing p 52.2 7.6 0.00032 18.5 2.5 54 122-181 55-108 (114)
120 1q3o_A Shank1; PDZ, GKAP, pept 51.8 12 0.00051 17.1 3.5 39 121-160 62-100 (109)
121 2kom_A Partitioning defective 51.8 8.6 0.00036 18.1 2.7 36 120-155 74-109 (121)
122 2q3g_A PDZ and LIM domain prot 51.5 10 0.00042 17.7 3.0 37 121-157 43-79 (89)
123 2vbf_A Branched-chain alpha-ke 51.2 10 0.00042 17.7 3.0 17 11-27 26-42 (570)
124 1v62_A KIAA1719 protein; struc 50.6 8 0.00034 18.3 2.4 56 100-157 40-95 (117)
125 1dmg_A Ribosomal protein L4; a 50.4 8.8 0.00037 18.0 2.6 85 125-213 118-224 (225)
126 1dcf_A ETR1 protein; beta-alph 50.3 10 0.00043 17.6 3.0 14 169-182 95-108 (136)
127 3ngh_A PDZ domain-containing p 50.1 9.6 0.0004 17.8 2.8 40 122-163 43-82 (106)
128 2he4_A Na(+)/H(+) exchange reg 50.0 7.9 0.00033 18.4 2.3 37 121-157 44-80 (90)
129 2v90_A PDZ domain-containing p 49.9 8.4 0.00035 18.2 2.4 40 122-163 47-86 (96)
130 1uju_A Scribble; PDZ domain, c 49.9 3 0.00013 21.1 0.2 38 120-157 60-97 (111)
131 2vwr_A Ligand of NUMB protein 49.7 9.6 0.0004 17.8 2.7 38 120-157 45-82 (95)
132 2o2t_A Multiple PDZ domain pro 49.5 10 0.00042 17.7 2.8 54 102-157 49-103 (117)
133 1b8q_A Protein (neuronal nitri 49.3 4.9 0.00021 19.7 1.2 56 101-158 32-87 (127)
134 3l4f_D SH3 and multiple ankyri 49.2 8.3 0.00035 18.2 2.3 40 120-160 81-120 (132)
135 1k4i_A 3,4-dihydroxy-2-butanon 48.8 14 0.00058 16.8 6.1 62 135-199 147-224 (233)
136 1tp5_A Presynaptic density pro 48.6 8.1 0.00034 18.3 2.2 38 120-157 54-91 (119)
137 1vb7_A PDZ and LIM domain 2; P 48.4 7.5 0.00032 18.5 2.0 37 121-157 46-82 (94)
138 2opg_A Multiple PDZ domain pro 48.4 9.6 0.0004 17.8 2.6 38 120-157 46-83 (98)
139 2pkt_A PDZ and LIM domain prot 47.2 9.8 0.00041 17.8 2.4 37 121-157 43-79 (91)
140 1m5z_A GRIP, AMPA receptor int 47.1 10 0.00044 17.6 2.6 36 122-157 49-84 (91)
141 1x5q_A LAP4 protein; PDZ domai 47.1 10 0.00042 17.7 2.5 36 121-157 63-98 (110)
142 1wfv_A Membrane associated gua 47.0 7.9 0.00033 18.4 2.0 38 120-157 52-89 (103)
143 2vsv_A Rhophilin-2; scaffold p 47.0 7.7 0.00033 18.4 1.9 40 120-160 60-99 (109)
144 1r6j_A Syntenin 1; PDZ, membra 47.0 11 0.00046 17.4 2.7 37 121-158 40-76 (82)
145 2cs5_A Tyrosine-protein phosph 46.9 3.2 0.00014 20.9 -0.1 44 120-163 58-101 (119)
146 1nf3_C PAR-6B; semi-CRIB motif 46.8 8.5 0.00036 18.2 2.1 40 119-158 80-119 (128)
147 1x6d_A Interleukin-16; PDZ dom 46.7 6.4 0.00027 18.9 1.4 39 121-159 59-97 (119)
148 2koj_A Partitioning defective 46.5 10 0.00043 17.6 2.5 44 120-163 55-98 (111)
149 1x45_A Amyloid beta (A4) precu 46.4 8.4 0.00035 18.2 2.0 44 120-163 49-92 (98)
150 1vae_A Rhophilin 2, rhophilin, 46.4 8.4 0.00035 18.2 2.0 42 120-162 52-93 (111)
151 2jba_A Phosphate regulon trans 46.1 13 0.00054 17.0 2.9 13 139-151 58-70 (127)
152 2qkv_A Inactivation-NO-after-p 46.1 11 0.00045 17.5 2.5 38 120-157 47-84 (96)
153 3gge_A PDZ domain-containing p 45.9 9.4 0.00039 17.9 2.2 44 120-163 44-87 (95)
154 3i4w_A Disks large homolog 4; 45.7 9.5 0.0004 17.8 2.2 52 120-176 51-102 (104)
155 1y7n_A Amyloid beta A4 precurs 45.2 11 0.00046 17.4 2.5 37 121-157 47-83 (90)
156 1ujd_A KIAA0559 protein; PDZ d 45.0 6.6 0.00028 18.9 1.3 38 120-157 65-102 (117)
157 1i16_A Interleukin 16, LCF; cy 44.7 11 0.00047 17.4 2.5 37 121-157 74-110 (130)
158 2yt7_A Amyloid beta A4 precurs 44.6 7.6 0.00032 18.5 1.6 44 120-163 53-96 (101)
159 3bpu_A Membrane-associated gua 44.6 11 0.00045 17.5 2.3 38 120-157 40-79 (88)
160 1wif_A RSGI RUH-020, riken cDN 44.4 9.4 0.0004 17.9 2.0 38 120-157 65-104 (126)
161 1z87_A Alpha-1-syntrophin; pro 44.1 8.2 0.00035 18.2 1.7 40 120-159 119-158 (263)
162 1rgw_A ZAsp protein; PDZ, cyph 43.6 8.9 0.00037 18.0 1.8 37 121-157 41-77 (85)
163 1v5q_A GRIP1 homolog, glutamat 42.4 6.3 0.00027 19.0 0.9 40 120-159 61-100 (122)
164 2uzc_A Human pdlim5, PDZ and L 42.3 13 0.00054 17.0 2.4 37 121-157 43-79 (88)
165 1wi4_A Synip, syntaxin binding 42.2 8.1 0.00034 18.3 1.4 40 119-158 56-95 (109)
166 2vph_A Tyrosine-protein phosph 42.2 5.1 0.00022 19.6 0.4 43 120-162 47-89 (100)
167 2rcz_A Tight junction protein 42.2 13 0.00057 16.8 2.5 38 120-157 37-74 (81)
168 2w4f_A Protein LAP4; structura 42.2 13 0.00054 17.0 2.4 42 121-166 51-92 (97)
169 1v5l_A PDZ and LIM domain 3; a 42.1 11 0.00044 17.5 2.0 38 120-157 44-81 (103)
170 1qau_A Neuronal nitric oxide s 41.3 11 0.00048 17.3 2.0 40 121-160 43-82 (112)
171 1tmy_A CHEY protein, TMY; chem 40.4 15 0.00064 16.5 2.6 59 135-195 55-115 (120)
172 2zkr_c 60S ribosomal protein L 40.4 8.9 0.00037 18.0 1.4 25 130-154 152-176 (421)
173 1ujv_A Membrane associated gua 40.3 16 0.00066 16.4 2.6 37 121-157 46-84 (96)
174 1whd_A RGS3, regulator of G-pr 40.3 15 0.00063 16.5 2.5 36 121-157 53-88 (100)
175 1g9o_A NHE-RF; PDZ domain, com 39.8 16 0.00066 16.4 2.6 41 122-164 44-84 (91)
176 2d90_A PDZ domain containing p 39.5 14 0.00057 16.8 2.2 37 121-157 46-82 (102)
177 1u37_A Amyloid beta A4 precurs 38.6 13 0.00056 16.9 2.0 36 120-155 45-80 (89)
178 2kpk_A Membrane-associated gua 38.4 15 0.00065 16.5 2.3 38 120-157 59-98 (129)
179 3khf_A Microtubule-associated 38.1 19 0.00079 15.9 2.7 38 122-159 51-88 (99)
180 2ejy_A 55 kDa erythrocyte memb 38.0 12 0.00049 17.3 1.7 38 120-157 52-89 (97)
181 2ego_A General receptor for ph 37.7 19 0.00079 15.9 2.7 37 122-158 54-90 (96)
182 3h5i_A Response regulator/sens 37.3 16 0.00068 16.3 2.3 20 87-106 65-84 (140)
183 1v6b_A Harmonin isoform A1; st 36.4 17 0.0007 16.3 2.2 33 120-152 59-91 (118)
184 2i04_A Membrane-associated gua 36.3 19 0.00079 15.9 2.5 38 120-157 41-80 (85)
185 3cbz_A Dishevelled-2; PDZ doma 35.9 8.5 0.00036 18.1 0.7 37 119-155 48-84 (108)
186 2z17_A Pleckstrin homology SEC 35.1 13 0.00054 17.0 1.5 36 122-157 65-100 (104)
187 1qo0_D AMIR; binding protein, 35.0 22 0.00093 15.4 2.8 15 11-25 23-37 (196)
188 3h4t_A Glycosyltransferase GTF 35.0 22 0.00094 15.4 3.9 16 142-157 238-253 (404)
189 2edp_A Fragment, shroom family 34.7 10 0.00043 17.7 0.9 37 120-157 51-87 (100)
190 2qbw_A PDZ-fibronectin fusion 34.1 23 0.00097 15.3 2.9 38 120-157 38-75 (195)
191 2f5y_A Regulator of G-protein 34.0 22 0.00094 15.4 2.6 35 123-157 42-76 (91)
192 2ixs_A SDAI restriction endonu 33.9 20 0.00083 15.8 2.3 38 128-165 243-284 (323)
193 2qt5_A Glutamate receptor-inte 33.5 20 0.00086 15.7 2.3 37 121-157 152-188 (200)
194 1u39_A Amyloid beta A4 precurs 33.4 21 0.00088 15.6 2.4 37 121-157 38-74 (80)
195 1ueq_A Membrane associated gua 33.1 23 0.00098 15.3 2.6 38 120-157 60-99 (123)
196 1uep_A Membrane associated gua 32.7 7.5 0.00032 18.5 -0.0 38 120-157 50-89 (103)
197 1u3b_A Amyloid beta A4 precurs 32.5 20 0.00085 15.7 2.2 37 121-157 128-164 (185)
198 2dvy_A Restriction endonucleas 31.6 25 0.0011 15.1 3.1 28 187-214 193-220 (226)
199 1ufx_A KIAA1526 protein; PDZ d 30.5 7.5 0.00031 18.5 -0.3 34 120-153 48-81 (103)
200 1p1d_A PDZ45, glutamate recept 29.6 27 0.0011 14.9 2.5 37 121-157 152-188 (196)
201 1wg6_A Hypothetical protein (r 29.6 27 0.0011 14.9 2.6 49 103-153 56-104 (127)
202 1uit_A Human discs large 5 pro 29.5 17 0.00071 16.2 1.4 37 121-157 58-94 (117)
203 2xf4_A Hydroxyacylglutathione 29.4 27 0.0012 14.8 2.5 14 93-106 66-79 (210)
204 2e7k_A Maguk P55 subfamily mem 29.4 19 0.00079 15.9 1.6 37 120-157 45-81 (91)
205 3hn7_A UDP-N-acetylmuramate-L- 29.1 28 0.0012 14.8 5.9 65 92-157 350-417 (524)
206 2fsv_C NAD(P) transhydrogenase 28.9 28 0.0012 14.8 3.0 68 124-192 44-116 (203)
207 1wfg_A Regulating synaptic mem 28.7 22 0.00094 15.4 1.9 51 102-154 65-115 (131)
208 2q9v_A Membrane-associated gua 28.4 9.5 0.0004 17.8 -0.1 35 120-154 43-77 (90)
209 1d4o_A NADP(H) transhydrogenas 28.2 29 0.0012 14.7 2.6 11 14-24 43-53 (184)
210 1wi2_A Riken cDNA 2700099C19; 27.7 27 0.0011 14.9 2.1 33 120-153 57-89 (104)
211 2eeh_A PDZ domain-containing p 27.4 24 0.001 15.2 1.8 35 122-157 53-87 (100)
212 2vz5_A TAX1-binding protein 3; 27.3 22 0.00093 15.4 1.6 38 121-158 80-117 (139)
213 1tks_A 3,4-dihydroxy-2-butanon 27.3 30 0.0013 14.6 4.7 58 135-195 139-202 (204)
214 3gsl_A Disks large homolog 4; 27.1 25 0.0011 15.1 1.9 36 121-156 147-182 (196)
215 3lte_A Response regulator; str 27.1 30 0.0013 14.6 4.5 16 138-153 61-76 (132)
216 3h74_A Pyridoxal kinase; PSI-I 26.8 25 0.0011 15.1 1.9 38 187-224 216-253 (282)
217 1djl_A Transhydrogenase DIII; 26.2 31 0.0013 14.5 3.4 68 124-192 43-115 (207)
218 2xb4_A Adenylate kinase; ATP-b 24.9 33 0.0014 14.3 2.9 49 80-128 4-58 (223)
219 3cg0_A Response regulator rece 24.7 32 0.0013 14.4 2.1 64 128-194 56-121 (140)
220 1f0k_A MURG, UDP-N-acetylgluco 24.5 34 0.0014 14.3 4.6 32 76-107 95-126 (364)
221 3eya_A Pyruvate dehydrogenase 24.5 34 0.0014 14.3 3.4 15 12-26 5-19 (549)
222 2yuy_A RHO GTPase activating p 24.2 22 0.00091 15.5 1.1 35 123-157 79-113 (126)
223 3f6p_A Transcriptional regulat 23.7 35 0.0015 14.2 4.3 53 139-194 58-112 (120)
224 2wvg_A PDC, pyruvate decarboxy 23.4 35 0.0015 14.1 4.4 16 12-27 5-20 (568)
225 2gkg_A Response regulator homo 22.7 35 0.0015 14.1 2.0 25 128-152 51-75 (127)
226 2j01_F 50S ribosomal protein L 22.6 26 0.0011 14.9 1.3 84 125-212 119-205 (210)
227 1snn_A DHBP synthase, 3,4-dihy 22.6 37 0.0015 14.0 5.3 60 135-197 158-222 (227)
228 1ovm_A Indole-3-pyruvate decar 22.5 37 0.0015 14.0 4.4 16 12-27 7-22 (552)
229 1uan_A Hypothetical protein TT 22.5 37 0.0015 14.0 3.8 34 3-42 7-43 (227)
230 3gt0_A Pyrroline-5-carboxylate 22.5 15 0.00063 16.6 0.0 15 11-25 12-26 (247)
231 2ftc_D Mitochondrial ribosomal 22.3 37 0.0016 14.0 2.6 83 125-210 87-174 (175)
232 3mbh_A Putative phosphomethylp 22.3 18 0.00074 16.1 0.3 17 141-157 166-182 (291)
233 1j6u_A UDP-N-acetylmuramate-al 22.2 11 0.00046 17.4 -0.7 62 92-153 285-348 (469)
234 3i42_A Response regulator rece 22.0 37 0.0016 14.0 4.3 10 86-95 60-69 (127)
235 2izz_A Pyrroline-5-carboxylate 22.0 37 0.0016 14.0 2.0 24 130-153 248-271 (322)
236 1yqg_A Pyrroline-5-carboxylate 21.5 35 0.0015 14.2 1.7 18 79-97 82-99 (263)
237 1qor_A Quinone oxidoreductase; 20.9 39 0.0017 13.8 5.3 21 84-104 148-169 (327)
238 2xed_A Putative maleate isomer 20.9 39 0.0017 13.8 3.8 48 141-188 133-180 (273)
239 3eod_A Protein HNR; response r 20.7 40 0.0017 13.8 4.3 26 140-166 64-89 (130)
240 2p91_A Enoyl-[acyl-carrier-pro 20.1 41 0.0017 13.7 4.0 19 200-218 234-252 (285)
241 2p12_A Hypothetical protein DU 20.0 41 0.0017 13.7 4.8 42 183-225 117-169 (176)
242 2rcy_A Pyrroline carboxylate r 20.0 41 0.0017 13.7 2.0 16 11-26 14-29 (262)
No 1
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, protein structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=100.00 E-value=0 Score=407.22 Aligned_cols=209 Identities=32% Similarity=0.645 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
Q ss_conf 89999999999865976820789867311872640142621357989999999999998664217566678998223125
Q gi|254781011|r 10 NIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGI 89 (228)
Q Consensus 10 ~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gi 89 (228)
.++++++++.|++++|++|+|+|||+|+||++||||||+|+++++|+.++.+++.+++.|.++. ..+|.|+|+|++||
T Consensus 3 m~~~~~~~~~L~~~~ai~f~~~~~F~L~SG~~S~~Yid~r~~~~~p~~~~~i~~~~~~~i~~~~--~~~d~i~G~~~~gi 80 (211)
T 2aee_A 3 MTLASQIATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKTRDLIENGFVETIKAHF--PEVEVIAGTATAGI 80 (211)
T ss_dssp SCHHHHHHHHHHHTTSEEECTTSCEECGGGCEESEEECGGGGGGCHHHHHHHHHHHHHHHHHHC--TTCCEEEEETTTTH
T ss_pred CCHHHHHHHHHHHCCCEEECCCCCEEECCCCCCHHHEECHHHHCCHHHHHHHHHHHHHHHHHHC--CCCCEECCCHHHHH
T ss_conf 4299999999997699995799985878335664563093232597899999999998887505--55363403134469
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCH
Q ss_conf 78899985158717876315642011001331037334144087887322369999999986598785688887417632
Q gi|254781011|r 90 PFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFP 169 (228)
Q Consensus 90 p~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~ 169 (228)
|+|+.+|..+++|++|+||++|+||+++++||.+.+|+||+|||||+|||+|+++++++|+++|++|++++|+++|+ ++
T Consensus 81 pla~~ia~~~~~p~~~vRKe~K~hG~~~~ieG~~~~g~~VliVEDViTTG~S~~~ai~~l~~~g~~V~~~~vivdr~-~~ 159 (211)
T 2aee_A 81 PHGAIIADKMTLPFAYIRSKPKDHGAGNQIEGRVLKGQKMVIIEDLISTGGSVLDAAAAASREGADVLGVVAIFTYE-LP 159 (211)
T ss_dssp HHHHHHHHHHTCCEEEECSSCC----CCSEESCCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEEEECC-CH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEECC-CH
T ss_conf 99999999757982355413455331232210137999899985304567215765446887498066999999888-61
Q ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4899999779809996329999999998889998999999999972997788
Q gi|254781011|r 170 EVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSK 221 (228)
Q Consensus 170 ~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~ 221 (228)
++.++++++|+++|||+|++||++++++.++|++++++.+++|++||.+|+.
T Consensus 160 ~~~~~l~~~gi~~~sl~t~~~ll~~~~~~~~i~~~~~~~i~~~~~dp~~w~~ 211 (211)
T 2aee_A 160 KASQNFKEAGIKLITLSNYTELIAVAKLQGYITNDGLHLLKKFKEDQVNWQQ 211 (211)
T ss_dssp HHHHHHHHHTCCEEESCCHHHHHHHHHHHTSSCHHHHHHHHHHHHCTTTCC-
T ss_pred HHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCC
T ss_conf 6899999669969995659999999998699999999999999859997578
No 2
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=100.00 E-value=0 Score=404.42 Aligned_cols=217 Identities=30% Similarity=0.548 Sum_probs=208.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 98889897899999999998659768207898673118726401426213579899999999999986642175666789
Q gi|254781011|r 2 IVNYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDII 81 (228)
Q Consensus 2 ~~~~~~~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I 81 (228)
+.|.+...+.|++++++.|+++|||+|+|++||+|+||++||||||+|+++++|+.+..+++.+++.|.+.. .++|.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~L~~~gav~f~~~~~FtL~SG~~S~~Y~d~r~~~~~P~~~~~i~~~~~~~i~~~~--~~~d~i 92 (234)
T 3m3h_A 15 TENLYFQSNAMKKEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNRLTLSYPKVRQTIAAGLEELIKEHF--PTVEVI 92 (234)
T ss_dssp ------CHHHHHHHHHHHHHHHTSEEECTTSCEECTTSCEESEEECGGGGGGCHHHHHHHHHHHHHHHHHHC--TTCCEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCHHCCCCHHHCCHHHHHHHHHHHHHHHHHCC--CCCCEE
T ss_conf 752201779999999999997499985799985867135773123590140399999999999999998618--888788
Q ss_pred EEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 98223125788999851587178763156420110013310373341440878873223699999999865987856888
Q gi|254781011|r 82 AGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG 161 (228)
Q Consensus 82 ~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v 161 (228)
+|++++|||+|+.+|..+++|++|+||++|+||+++++||.+.+|+||+|||||+|||+|+++++++|+++|++|++++|
T Consensus 93 ~G~~~~Gi~~a~~ia~~l~~p~~~vRK~~K~~G~~~~ieg~~~~G~~VlIVDDViTTG~Si~~ai~~lr~~G~~V~~v~v 172 (234)
T 3m3h_A 93 AGTATAGIAHAAWVSDRMDLPMCYVRSKAKGHGKGNQIEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVLGIVS 172 (234)
T ss_dssp EEC---CHHHHHHHHHHHTCCEEEEC---------CCEESCCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 51677799999999834585289997238887644011464457955999853003472279999999978997999999
Q ss_pred EEECCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHH
Q ss_conf 874176324899999779809996329999999998889998999999999972997--788
Q gi|254781011|r 162 LFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQ--WSK 221 (228)
Q Consensus 162 ii~~~~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~--W~~ 221 (228)
+++|+ ++++.+++++.||++|||+|+++|++++.+.++|++++++.|++||+||.+ |++
T Consensus 173 ivdr~-~~gg~e~l~~~Gv~~~sL~t~~dl~~~~~~~~~i~~~~~~~i~~yl~np~~~~w~~ 233 (234)
T 3m3h_A 173 IFTYE-LEAGKEKLEAANVASYSLSDYSALTEVAAEKGIIGQAETKKLQEWRKNPADEAWIT 233 (234)
T ss_dssp EEECC-CHHHHHHHHHTTCCEEESSCHHHHHHHHHHTTSSCHHHHHHHHHHHHCTTCGGGGG
T ss_pred EEECC-CHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99877-44069999967997899776999999999859999999999999983977121778
No 3
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=100.00 E-value=0 Score=396.93 Aligned_cols=211 Identities=32% Similarity=0.628 Sum_probs=203.1
Q ss_pred CHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 97899999999998659768207898673118726401426213579899999999999986642175666789982231
Q gi|254781011|r 8 QQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETA 87 (228)
Q Consensus 8 ~~~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~ 87 (228)
...+++.++|+.|++++||+|+|+.||+|+||++||||||||+++++|+.+.++++++++.|.+.. .++|.|+|++++
T Consensus 33 ~~~~~~~~~a~~l~~~~av~f~~~~pFtL~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~--~~~d~i~G~a~~ 110 (243)
T 3dez_A 33 GSMTLAKDIARDLLDIKAVYLKPEEPFTWASGIKSPIYTDNRITLSYPETRTLIENGFVETIKEAF--PEVEVIAGTATA 110 (243)
T ss_dssp SCHHHHHHHHHHHHHHTSEEECTTSCEEC---CEESEEECTTGGGGCHHHHHHHHHHHHHHHHHHC--TTCCEEEEETTT
T ss_pred CHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCCEEEECCHHHCCHHHHHHHHHHHHHHHHHHC--CCCCEEECCCCC
T ss_conf 216799999999986698994699981764377126726590230599999999999999998622--456634233112
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf 25788999851587178763156420110013310373341440878873223699999999865987856888874176
Q gi|254781011|r 88 GIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDI 167 (228)
Q Consensus 88 Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~ 167 (228)
|||+++.+|.++++|++|+||++|+||+++++||.+.+|+||||||||+|||+|+++++++|+++|++|++++|+++|+
T Consensus 111 gIp~a~~ia~~~~~p~~~vRke~K~~G~~~~ieg~~~~g~rVlIVEDViTTGgSileai~~l~~~G~~V~~v~vivDR~- 189 (243)
T 3dez_A 111 GIPHGAIIADKMNLPLAYIRSKPKDHGAGNQIEGRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYE- 189 (243)
T ss_dssp THHHHHHHHHHTTCCEEEECSSCC-----CCEESCCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEEEECC-
T ss_pred CHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEECC-
T ss_conf 1899999998617984146764047763046730359999899985114567445899999998799799999999888-
Q ss_pred CHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 324899999779809996329999999998889998999999999972997788
Q gi|254781011|r 168 FPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSK 221 (228)
Q Consensus 168 ~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~ 221 (228)
++++.++|+++||++|||+|++||++++++.++|++++++.+++||+||.+|+.
T Consensus 190 ~~g~~~~l~~~Gv~~~sL~t~~dll~~l~~~~~i~~~~~~~l~~~l~~p~~w~~ 243 (243)
T 3dez_A 190 LPKATANFEKASVKLVTLSNYSELIKVAKVQGYIDADGLTLLKKFKENQETWQD 243 (243)
T ss_dssp CHHHHHHHHHHTCCEEESSCHHHHHHHHHHTTSSCHHHHHHHHHHHHCTTTTTC
T ss_pred CCHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCC
T ss_conf 621799999669979994859999999998699999999999999859995059
No 4
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A*
Probab=100.00 E-value=0 Score=342.90 Aligned_cols=201 Identities=20% Similarity=0.327 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
Q ss_conf 89999999999865976820789867311872640142621357989999999999998664217566678998223125
Q gi|254781011|r 10 NIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGI 89 (228)
Q Consensus 10 ~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gi 89 (228)
++.++++.+.|++.+|++| |+|+|+||++||||||+|.+. +|..+..++..+++.+.+.. .++|.|+|+|++||
T Consensus 6 ~~~~~~~~~~l~~~~alk~---G~F~L~SG~~Sp~Y~d~~~~~-~~~~l~~l~~~~~~~i~~~~--~~~d~I~G~a~gGI 79 (226)
T 2ps1_A 6 EDYQKNFLELAIECQALRF---GSFKLKSGRESPYFFNLGLFN-TGKLLSNLATAYAIAIIQSD--LKFDVIFGPAYKGI 79 (226)
T ss_dssp CHHHHHHHHHHHHTTCEEE---EEEECTTSCEEEEEECGGGCC-BHHHHHHHHHHHHHHHHHHT--CCCSEEEECTTTHH
T ss_pred HHHHHHHHHHHHHCCCEEE---CCEEECCCCCCCEEEECEEEC-CHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCH
T ss_conf 9999999999998899593---967877667678607381408-86999999999999998727--78543357122440
Q ss_pred HHHHHHHHHC---------CCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 7889998515---------8717876315642011001331037334144087887322369999999986598785688
Q gi|254781011|r 90 PFATLLAERL---------NLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI 160 (228)
Q Consensus 90 p~a~~iA~~l---------~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~ 160 (228)
|+|+.+|..+ ++|++|+||++|+||+++++||.+.+|+||+|||||+|||+|+++++++|+++|++|++++
T Consensus 80 Pla~~va~~l~~~~~~~~~~~p~~~~Rke~K~hG~~~~ieG~~~~G~~VlIVDDViTTG~S~~eai~~l~~~G~~V~~~~ 159 (226)
T 2ps1_A 80 PLAAIVCVKLAEIGGSKFQNIQYAFNRKEAKDHGEGGIIVGSALENKRILIIDDVMTAGTAINEAFEIISNAKGQVVGSI 159 (226)
T ss_dssp HHHHHHHHHHHHHSTTTTTTCEEEEEEEEEESSTTCEEEEESCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 77899999999741001578870578425455677742437547797079986103568458999999998799899999
Q ss_pred EEEECCC---------CHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8874176---------324899999779809996329999999998889998999999999972997788
Q gi|254781011|r 161 GLFFYDI---------FPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSK 221 (228)
Q Consensus 161 vii~~~~---------~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~ 221 (228)
|++||+. .....+.++++|+++|||++++++++++ .+++++++++.|++|++ +|+.
T Consensus 160 vivDR~e~g~~~~~~~~~a~~~~~~~~gi~v~Sl~~l~~li~~~--~~~i~~e~~~~i~~y~~---~yg~ 224 (226)
T 2ps1_A 160 IALDRQEVVSTDDKEGLSATQTVSKKYGIPVLSIVSLIHIITYL--EGRITAEEKSKIEQYLQ---TYGA 224 (226)
T ss_dssp EEEECCBBSCTTCSSCCBHHHHHHHHHTCCEEEEEEHHHHHHHH--GGGCCSSHHHHHHHHHH---HHBC
T ss_pred EEEECHHCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHH--HCCCCHHHHHHHHHHHH---HHCC
T ss_conf 99971120455542210179999986498199973499999998--65799999999999999---8686
No 5
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=100.00 E-value=0 Score=340.72 Aligned_cols=199 Identities=29% Similarity=0.469 Sum_probs=189.0
Q ss_pred HHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH
Q ss_conf 99999998659768207898673118726401426213579899999999999986642175666789982231257889
Q gi|254781011|r 14 ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFAT 93 (228)
Q Consensus 14 ~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~ 93 (228)
+.+++.|+++||++| |||+|+||++||||+|+++++++|+.++.+++.+++.+.+.. .++|.|+|++++|+|+|+
T Consensus 4 ~~l~~~L~d~~a~k~---G~F~l~SG~~S~~YiD~~~~l~~p~~~~~l~~~la~~i~~~~--~~~d~Ivg~~~gGipla~ 78 (205)
T 2wns_A 4 GPLVTGLYDVQAFKF---GDFVLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQTAQNAG--ISFDTVCGVPYTALPLAT 78 (205)
T ss_dssp HHHHHHHHTTTCEEE---EEEECTTSCEEEEEECGGGGGGSHHHHHHHHHHHHHHHHHTT--CCCSEEEECTTTTHHHHH
T ss_pred HHHHHHHHHCCCEEE---CCEEECCCCCCCEEEECHHHHCCHHHHHHHHHHHHHHHHHCC--CCCCEEEECCHHHHHHHH
T ss_conf 999999988899687---957857757688679896773699999999999999888608--888758712022189989
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHH
Q ss_conf 99851587178763156420110013310373341440878873223699999999865987856888874176324899
Q gi|254781011|r 94 LLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPA 173 (228)
Q Consensus 94 ~iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~ 173 (228)
.+|..+++|++|+||++|+||+.+.+||.+.+|+||+||||++|||+|+.+++++++++|++|++++|+++| .+++.+
T Consensus 79 ~va~~l~~p~~~~RK~~k~~g~~~~~~g~i~~g~~VlIVDDvitTG~T~~~ai~~l~~~G~~v~~v~vivdr--~~~~~~ 156 (205)
T 2wns_A 79 VICSTNQIPMLIRRKETKDYGTKRLVEGTINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDR--EQGGKD 156 (205)
T ss_dssp HHHHHHTCCEEEECCTTTTSSSCCSEESCCCTTCBEEEEEEEESSSHHHHHHHHHHHHTTCBCCEEEEEEEC--CSSHHH
T ss_pred HHHHHCCCCCEEEEECCCCCCCCEEECCCCCCCCEEEEEEEEHHCCCCHHHHHHHHHHCCCEEEEEEEEEEC--CCCHHH
T ss_conf 888753899346762036666311466876666459999610212706798999998689889999999977--616599
Q ss_pred HHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9997798099963299999999988899989999999999729977
Q gi|254781011|r 174 RFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQW 219 (228)
Q Consensus 174 ~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W 219 (228)
+++++|++++||++++||++++++.++|+++++..+++|+++.+..
T Consensus 157 ~l~~~gi~~~sL~~l~dl~~~~~~~~~i~~~~~~~v~~~l~~~~~~ 202 (205)
T 2wns_A 157 KLQAHGIRLHSVCTLSKMLEILEQQKKVDAETVGRVKRFIQEAHHH 202 (205)
T ss_dssp HHHTTTCEEEEEEEHHHHHHHHHHTTSSCHHHHHHHHHHHHC----
T ss_pred HHHHCCCCEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9997799499975099999999986999999999999999863440
No 6
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=100.00 E-value=0 Score=336.80 Aligned_cols=199 Identities=20% Similarity=0.314 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH
Q ss_conf 99999999998659768207898673118726401426213579899999999999986642175666789982231257
Q gi|254781011|r 11 IIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIP 90 (228)
Q Consensus 11 ~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip 90 (228)
..+++++++|++.||++| |+|+|+||++||||||+|.+.++|.++ .++..+++.+.+.. .++|+|+|||++|||
T Consensus 28 ~~k~~~~~~l~e~~alkf---G~F~L~SG~~S~~Yvd~~~~~~~p~l~-~l~~~~~~~i~~~~--~~~D~I~G~a~gGIp 101 (238)
T 3n2l_A 28 AYQREFIEFALEKQVLKF---GEFTLKSGRKSPYFFNAGLFNTGRDLA-RLGRFYAAALVDSG--IEFDVLFGPAYKGIP 101 (238)
T ss_dssp HHHHHHHHHHHHTTSEEE---EEEECSSSCEEEEEECGGGCCBHHHHH-HHHHHHHHHHHHHT--CCCSEEEECTTTHHH
T ss_pred HHHHHHHHHHHHCCCEEE---CCEEECCCCCCCCCEECEEECCCHHHH-HHHHHHHHHHHHHC--CCCCEEECCCCCCHH
T ss_conf 999999999998899084---817888657567017284308749999-99999999998728--774568413223047
Q ss_pred HHHHHHHHC------CCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf 889998515------87178763156420110013310373341440878873223699999999865987856888874
Q gi|254781011|r 91 FATLLAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228)
Q Consensus 91 ~a~~iA~~l------~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228)
+|+.+|..+ ++|++|+||++|+||+++++||..+.| ||+|||||+|||+|+++++++|+++|++|++++|++|
T Consensus 102 la~~vA~~l~~~~~~~~p~~~~Rke~K~~G~~~~ieG~~~~g-rVlIVDDViTTG~Si~~ai~~l~~~G~~V~~v~vivD 180 (238)
T 3n2l_A 102 IATTTAVALADHHDVDTPYCFNRKEAKNHGEGGNLVGSKLEG-RVMLVDDVITAGTAIRESMELIQANKADLAGVLVAID 180 (238)
T ss_dssp HHHHHHHHHHHHSCCCCBEEEECCC--------CEEESCCCS-EEEEECSCCSSSHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-CEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 789999999981398876399952664556574101556777-6799976516684589999999987994899999865
Q ss_pred CCCC-----HHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1763-----2489999977980999632999999999888999899999999997299778
Q gi|254781011|r 165 YDIF-----PEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWS 220 (228)
Q Consensus 165 ~~~~-----~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~ 220 (228)
|+.. ....+.++++||+++||+|++||++++++.++++ ++.+.|++|++ +|+
T Consensus 181 R~~gg~~~~~a~~~~~~~~gi~~~Sl~tl~dl~~~l~~~~~~~-e~~~~i~~y~~---~yg 237 (238)
T 3n2l_A 181 RQEKGKGELSAIQEVERDFGCAVISIVSLTDLITYLEQQGNNT-EHLEAVKAYRA---QYG 237 (238)
T ss_dssp CCCBCSSSSBHHHHHHHHHCCEEEEEEEHHHHHHHHHSSCCHH-HHHHHHHHHHH---HHB
T ss_pred CCCCCCCCHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCCCCH-HHHHHHHHHHH---HHC
T ss_conf 0215542022899999974982999813999999999859988-99999999999---729
No 7
>1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A
Probab=100.00 E-value=0 Score=333.85 Aligned_cols=200 Identities=21% Similarity=0.360 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHH
Q ss_conf 89999999999865976820789867311872640142621357989999999999998664217566678998223125
Q gi|254781011|r 10 NIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGI 89 (228)
Q Consensus 10 ~~~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gi 89 (228)
.++++++.+.|++.||++| |||+|+||++||||||+|++.++|.. .++++.+++.+.+.. .++|.|+|+|++||
T Consensus 2 ~~~k~~~i~~l~~~~al~~---G~F~L~SG~~S~~Yid~r~~~~~~~~-~~i~~~~~~~~~~~~--~~~d~i~g~a~ggi 75 (213)
T 1lh0_A 2 KPYQRQFIEFALNKQVLKF---GEFTLKSGRKSPYFFNAGLFNTGRDL-ALLGRFYAEALVDSG--IEFDLLFGPAYKGI 75 (213)
T ss_dssp CHHHHHHHHHHHHTTSEEE---EEEECTTSCEEEEEECGGGCCBHHHH-HHHHHHHHHHHHHHC--CCCSEEECCTTTHH
T ss_pred HHHHHHHHHHHHHCCCEEE---CCEEECCCCCCCEEEECEEECCHHHH-HHHHHHHHHHHHHHC--CCCCEEECHHHHHH
T ss_conf 4799999999998899597---93887655757777818210886899-999999999999716--77565743044238
Q ss_pred HHHHHHHHHC------CCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 7889998515------8717876315642011001331037334144087887322369999999986598785688887
Q gi|254781011|r 90 PFATLLAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228)
Q Consensus 90 p~a~~iA~~l------~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228)
|+|+.+|..+ ++|++|+||++|+||+++++||..++| ||+|||||+|||+|+++++++|+++|++|++++|++
T Consensus 76 pla~~va~~l~~~~~~~~p~~~~Rke~k~~G~~~~ieG~~~~~-rVliVeDViTTG~S~~e~i~~l~~~G~~V~~v~viv 154 (213)
T 1lh0_A 76 PIATTTAVALAEHHDKDLPYCFNRKEAKDHGEGGSLVGSALQG-RVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISL 154 (213)
T ss_dssp HHHHHHHHHHHHHHCCCCBEEEECSSCCSSTTCSSEEESCCCS-EEEEECSCCSSSCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCCC-CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 8999999999984388876189950454467776020577778-489997231425658999999998799799999998
Q ss_pred ECC-----CCHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 417-----632489999977980999632999999999888999899999999997299778
Q gi|254781011|r 164 FYD-----IFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWS 220 (228)
Q Consensus 164 ~~~-----~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~ 220 (228)
||. .+..+.+.++++||++|||+|++|+++++++.+++++ ..+.|++|++ +|+
T Consensus 155 DR~~g~~~~~~~~~e~~~~~Gi~~~sl~t~~dll~~l~~~~~~~e-~~~~i~~y~~---~yg 212 (213)
T 1lh0_A 155 DRQERGRGEISAIQEVERDYGCKVISIITLKDLIAYLEEKPDMAE-HLAAVRAYRE---EFG 212 (213)
T ss_dssp ECCBBCSSSSBHHHHHHHHHCCEEEEEEEHHHHHHHHHHCGGGHH-HHHHHHHHHH---HHB
T ss_pred EECCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHH-HHHHHHHHHH---HCC
T ss_conf 742366421658999998659739997309999999997686289-9999999999---719
No 8
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=100.00 E-value=0 Score=337.95 Aligned_cols=194 Identities=17% Similarity=0.352 Sum_probs=174.1
Q ss_pred HHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 99999986597682078986731187264014262135798999999999999866421756667899822312578899
Q gi|254781011|r 15 LVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATL 94 (228)
Q Consensus 15 ~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~ 94 (228)
.+.++|++.+|++| |+|+|+||++||||||||++.++|..+ .+++.+++.+.+.. .++|.|+|+|++|||+|+.
T Consensus 25 ~fie~~~~~~alkf---G~FtL~SG~~S~~Y~d~~~~~~~p~l~-~l~~~~a~~i~~~~--~~~D~i~G~a~gGIpla~~ 98 (232)
T 3mjd_A 25 MFIEFALKNQVLKF---GEFTLKSGRISPYFFNAGLFNTGAQLA-TLADYYAQLIIKSD--VKYDILFGPAYKGIPLVAA 98 (232)
T ss_dssp CHHHHHHHTTSEEE---EEEECTTSCEEEEEECGGGCCBHHHHH-HHHHHHHHHHHHCC--CCCSEEEECTTTHHHHHHH
T ss_pred HHHHHHHHCCCEEE---CEEEECCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHC--CCCCEEECCHHCCCHHHHH
T ss_conf 99999998898084---708857657478427090208569999-99999999998627--7757672302022057899
Q ss_pred HHHHC------CCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCC
Q ss_conf 98515------871787631564201100133103733414408788732236999999998659878568888741763
Q gi|254781011|r 95 LAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIF 168 (228)
Q Consensus 95 iA~~l------~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~ 168 (228)
+|..+ ++|++|+||++|+||+++++||.+.+|+||+|||||+|||+|+++++++|+++|++|++++|++||+
T Consensus 99 vA~~l~~~~~~~~p~~~~RKe~K~hG~~~~ieG~~~~g~~VlIVDDViTTG~S~~~ai~~l~~~G~~V~~v~vivDR~-- 176 (232)
T 3mjd_A 99 ISTVLALKYNIDMPYAFDRKEAKDHGEGGVFVGADMTNKKVLLIDDVMTAGTAFYESYNKLKIINAKIAGVVLSIDRQ-- 176 (232)
T ss_dssp HHHHHHHHHCCCCBEEEECCC-------CCEEESCCTTCEEEEECSCCSSSHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEEHH--
T ss_conf 999999851778871688411355676664357656655158983103568578999999998699799999999801--
Q ss_pred HH--------HHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 24--------899999779809996329999999998889998999999999972997788
Q gi|254781011|r 169 PE--------VPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSK 221 (228)
Q Consensus 169 ~~--------~~~~l~~~gi~~~sl~t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~ 221 (228)
++ ..+.+++.||+++||+|++||++++++ .++++.++.+++|++ +|+.
T Consensus 177 egg~~~~~~a~~~~~~~~gi~~~Sl~~l~di~~~~~~--~~~~~~~~~i~~y~~---~yG~ 232 (232)
T 3mjd_A 177 EKAKDSDISATKKISQDFNIPVLAVTNFESIFEYVKE--NLDETMIDKFKQYRQ---KYGS 232 (232)
T ss_dssp BCCTTSSSCHHHHHHHHHCCCEEEEEEHHHHHHHHHH--HSCHHHHHHHHHHHH---HHBC
T ss_pred HCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHH--CCCHHHHHHHHHHHH---HCCC
T ss_conf 2364333368999999669869997759999999986--299999999999999---8188
No 9
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix}
Probab=100.00 E-value=6e-44 Score=305.99 Aligned_cols=177 Identities=30% Similarity=0.389 Sum_probs=165.0
Q ss_pred HHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 99999986597682078986731187264014262135798999999999999866421756667899822312578899
Q gi|254781011|r 15 LVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATL 94 (228)
Q Consensus 15 ~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~ 94 (228)
+++++|.+.||+++ |||+|+||++||||+|+|+++++|+.+..+++.+++.+.+.. .++|+|+|++++|+|+|+.
T Consensus 1 ~l~~~l~~~ga~~~---G~F~l~SG~~S~~Yid~~~ll~~p~~~~~~~~~~~e~~~~~~--~~~d~Vvg~~~gGip~a~~ 75 (178)
T 2yzk_A 1 MLAKVLKKRGAVLR---GDFVLSSGRRSSVYIDMRRLLGDESSYSVALDLLLEVGGQDL--ARSSAVIGVATGGLPWAAM 75 (178)
T ss_dssp CHHHHHHHHTSEEE---EEEECTTSCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHH--HHCSEEEEETTTTHHHHHH
T ss_pred CHHHHHHHCCCEEC---CEEEECCCCCCCHHEECHHHCCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHH
T ss_conf 96899988698791---879937736264216497774799999999999999987544--6589899873774156677
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH
Q ss_conf 98515871787631564201100133103733414408788732236999999998659878568888741763248999
Q gi|254781011|r 95 LAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR 174 (228)
Q Consensus 95 iA~~l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~ 174 (228)
+|.++++|++|+||++|+||+.+++||.. +|+||+|||||+|||+|+.+++++++++|++|.+++|+++| .+++.+.
T Consensus 76 ~A~~l~~p~~~iRk~~k~~g~~~~~~g~~-~g~~VlIVDDvitTG~S~~~~i~~l~~~G~~v~~v~vlvdr--~~~~~e~ 152 (178)
T 2yzk_A 76 LALRLSKPLGYVRPERKGHGTLSQVEGDP-PKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVLVDR--GEGAGEL 152 (178)
T ss_dssp HHHHHTCCEEEECCCCTTSCCCCCCBTCC-CSSEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEEEEC--CSSHHHH
T ss_pred HHHHHCCCEEEEEEECCCCCCCCEEEEEC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEEC--CCCHHHH
T ss_conf 78864587202231035665441488524-89579999744735746899999999889979999999978--7676899
Q ss_pred HHHCCCEEEEECCHHHHHHHHHHCC
Q ss_conf 9977980999632999999999888
Q gi|254781011|r 175 FRENNIKLHYLATWNDILTIAEKLK 199 (228)
Q Consensus 175 l~~~gi~~~sl~t~~~il~~l~~~~ 199 (228)
+++.|++++||++|+||++++...|
T Consensus 153 ~~~~gi~~~Sl~~~~~l~~~l~~~~ 177 (178)
T 2yzk_A 153 LARMGVRLVSVATLKTILEKLGWGG 177 (178)
T ss_dssp HHTTTCEEEEEEEHHHHHHHTTCCC
T ss_pred HHHCCCCEEEEEEHHHHHHHHHHCC
T ss_conf 9976998999738999999998608
No 10
>2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.44A {Corynebacterium diphtheriae NCTC13129}
Probab=100.00 E-value=1.8e-40 Score=283.26 Aligned_cols=169 Identities=26% Similarity=0.342 Sum_probs=153.0
Q ss_pred HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH
Q ss_conf 99999999865976820789867311872640142621357989999999999998664217566678998223125788
Q gi|254781011|r 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFA 92 (228)
Q Consensus 13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a 92 (228)
+++++++ ++.+|+++ |||+|+||++||||||+++++++|+.++.+++.+++.+.. .++|.|+|++++|+|++
T Consensus 7 ~~~l~~l-~~~~a~~~---G~F~L~SG~~S~~Yid~~~~~~~p~~~~~l~~~l~~~~~~----~~~~~i~gi~~~g~~~a 78 (180)
T 2p1z_A 7 KAELAEL-VKELAVVH---GKVTLSSGKEADYYVDLRRATLHARASRLIGELLRELTAD----WDYVAVGGLTLGADPVA 78 (180)
T ss_dssp HHHHHHH-HHHHTC------------------CCCTHHHHTSHHHHHHHHHHHHHTTTT----SCCSEEEEETTTHHHHH
T ss_pred HHHHHHH-HHHCCEEE---CEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC----CCCCEEEECCCCHHHHH
T ss_conf 9999999-98378186---9599677683898784952224889999999999987634----68628974131126888
Q ss_pred HHHHHH--CCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHH
Q ss_conf 999851--587178763156420110013310373341440878873223699999999865987856888874176324
Q gi|254781011|r 93 TLLAER--LNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE 170 (228)
Q Consensus 93 ~~iA~~--l~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~ 170 (228)
+.++.. .++|++++||++|+||+..++||.+.+|+||+|||||+|||+|+.+++++|+++|++|++++|++ ||.++
T Consensus 79 ~~~~~a~~~~l~~~~~rke~k~~g~~~~~~g~~~~g~rVlIVDDviTTG~S~~~~i~~l~~~G~~V~~v~viv--dr~~~ 156 (180)
T 2p1z_A 79 TSVMHADGREIHAFVVRKEAKKHGMQRRIEGPDVVGKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATVV--DRATG 156 (180)
T ss_dssp HHHHHSSSSCCEEEEECSCCC-CC-CCSEESSCCTTCEEEEEEEECSSSHHHHHHHHHHHHHTCEEEEEEEEE--C-CCC
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEE--ECCCC
T ss_conf 8999984777862799875156763035775405897689997523037519999999998899799999999--88867
Q ss_pred HHHHHHHCCCEEEEECCHHHH
Q ss_conf 899999779809996329999
Q gi|254781011|r 171 VPARFRENNIKLHYLATWNDI 191 (228)
Q Consensus 171 ~~~~l~~~gi~~~sl~t~~~i 191 (228)
+.+++++.|++++||++++||
T Consensus 157 ~~e~~~~~gi~~~sL~tl~dl 177 (180)
T 2p1z_A 157 AADVIAAEGLEYRYILGLEDL 177 (180)
T ss_dssp HHHHHHTTTCCEEEEECSTTT
T ss_pred HHHHHHHCCCCEEEEEEHHHC
T ss_conf 578998669969999558985
No 11
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Probab=99.97 E-value=1.4e-31 Score=225.44 Aligned_cols=155 Identities=19% Similarity=0.319 Sum_probs=138.0
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 18726401426213579899999999999986642175666789982231257889998515871787631564201100
Q gi|254781011|r 38 SGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKS 117 (228)
Q Consensus 38 SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~ 117 (228)
|.+.+|+|+|.+.++++|+.++.+++.+++.+... ..++|+|+|++++|+|+|+.+|.++++||+++||+.|.||...
T Consensus 34 ~p~~~~~F~Di~~ll~~P~~~~~i~~~l~~~~k~~--~~~~D~Ivgie~~Gi~~A~~lA~~Lg~p~v~vRK~~K~~g~~~ 111 (236)
T 1qb7_A 34 SPRNVPRFADVSSITESPETLKAIRDFLVQRYRAM--SPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLI 111 (236)
T ss_dssp SSSCSSSEECTHHHHTCHHHHHHHHHHHHHHHHHC--SSCCSEEEEETTGGGGTHHHHHHHHTCCEEEEBCGGGCCSSEE
T ss_pred CCCCCCEEEECCHHHCCHHHHHHHHHHHHHHHHHC--CCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCCCCE
T ss_conf 99989889849047549999999999999999854--8999899966446589899999986347688653156788750
Q ss_pred HHH------------------HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHC-
Q ss_conf 133------------------1037334144087887322369999999986598785688887417632489999977-
Q gi|254781011|r 118 QIE------------------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFREN- 178 (228)
Q Consensus 118 ~iE------------------G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~- 178 (228)
++| +.+.+|+||+|||||+|||+|+.+++++++++|++|+++++++++. +.+|++++.+.
T Consensus 112 ~~e~~~~e~g~~~~~~l~~~~~~i~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvg~~~iie~~-~l~Gr~~l~~~g 190 (236)
T 1qb7_A 112 RSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIP-FLKAAEKIHSTA 190 (236)
T ss_dssp ECCCCCCCTTSCCCCCCEEETTSSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEEEECG-GGCHHHHHHHHH
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEEECC-CCCHHHHHHHCC
T ss_conf 4688998871365422222378535696799996016356699999999998799899999999858-777799998605
Q ss_pred -----CCEEEEECCHHHHHHHH
Q ss_conf -----98099963299999999
Q gi|254781011|r 179 -----NIKLHYLATWNDILTIA 195 (228)
Q Consensus 179 -----gi~~~sl~t~~~il~~l 195 (228)
+++++||++++.++++.
T Consensus 191 ~~~~~~i~i~sL~~~d~l~~e~ 212 (236)
T 1qb7_A 191 NSRYKDIKFISLLSDDALTEEN 212 (236)
T ss_dssp HHTTTTCCEEEEEEGGGCCGGG
T ss_pred CCCCCCCCEEEEECCCHHHHHH
T ss_conf 5644686579852331564765
No 12
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12}
Probab=99.95 E-value=2.3e-28 Score=204.43 Aligned_cols=153 Identities=25% Similarity=0.320 Sum_probs=134.0
Q ss_pred EEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEE
Q ss_conf 68207898673118726401426213579899999999999986642175666789982231257889998515871787
Q gi|254781011|r 26 VNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIY 105 (228)
Q Consensus 26 i~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~ 105 (228)
|+-.|+-| +.|. .|.|...++++|+.++.+++.+++.+.. .++|+|+|+|++|+|+|+++|..+++|+++
T Consensus 22 i~~~~dfP---~~Gi---~f~Di~~il~dP~~~~~v~~~la~~~~~----~~~D~Iv~~e~~Gi~la~~lA~~l~~p~v~ 91 (190)
T 2dy0_A 22 IKSIQDYP---KPGI---LFRDVTSLLEDPKAYALSIDLLVERYKN----AGITKVVGTEARGFLFGAPVALGLGVGFVP 91 (190)
T ss_dssp SEEETTCS---STTC---CEEETHHHHHCHHHHHHHHHHHHHHHTT----TTCCEEEEETTHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCC---CCCC---EEEECCHHHCCHHHHHHHHHHHHHHHCC----CCCCEEEECCCCCCHHHHHHHHHCCCCEEE
T ss_conf 78759999---9995---7996982766999999999999998406----899999973534312068999975998698
Q ss_pred EECCCCCCH--------------HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHH
Q ss_conf 631564201--------------100133103733414408788732236999999998659878568888741763248
Q gi|254781011|r 106 VRKKSKKHG--------------QKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEV 171 (228)
Q Consensus 106 vRK~~K~hG--------------~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~ 171 (228)
+||+.|.+| +..+.++.+.+|+|||||||++|||+|+..++++++++|++|++++|++++. ++++
T Consensus 92 ~RK~~k~~~~~~~~~~~~~~~~~~~~i~~~~l~~G~rVlIVDDvlaTGgT~~a~~~ll~~~Ga~Vvg~~viie~~-~~~G 170 (190)
T 2dy0_A 92 VRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLF-DLGG 170 (190)
T ss_dssp EBSTTCCCSCEEEEEEEETTEEEEEEEEGGGCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEEEEEG-GGCH
T ss_pred EEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEECC-CCCH
T ss_conf 755798888606899988603788898636678998799982441317489999999998699899999999858-8797
Q ss_pred HHHHHHCCCEEEEECCHH
Q ss_conf 999997798099963299
Q gi|254781011|r 172 PARFRENNIKLHYLATWN 189 (228)
Q Consensus 172 ~~~l~~~gi~~~sl~t~~ 189 (228)
+++|++.|+++|||+.++
T Consensus 171 ~~~l~~~gv~v~SLi~~~ 188 (190)
T 2dy0_A 171 EQRLEKQGITSYSLVPFP 188 (190)
T ss_dssp HHHHHTTTCEEEEEEEEC
T ss_pred HHHHHHCCCCEEEEEECC
T ss_conf 899876799569988659
No 13
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, structural genomics, PSI, protein structure initative; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=99.95 E-value=2e-27 Score=198.34 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=131.8
Q ss_pred HHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH
Q ss_conf 99999998659768207898673118726401426213579899999999999986642175666789982231257889
Q gi|254781011|r 14 ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFAT 93 (228)
Q Consensus 14 ~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~ 93 (228)
+++.+.+.+.+.++ .+.|. ..+.-..+++ +|+.++.+++.+++.+.. .++|+|+|++++|+|+|+
T Consensus 5 ~~L~~~i~~~~~v~---~~~~~-~~~~~l~~~~-------dP~~~~~i~~~la~~~~~----~~~d~Ivg~~~~GiplA~ 69 (197)
T 1y0b_A 5 EALKRKIEEEGVVL---SDQVL-KVDSFLNHQI-------DPLLMQRIGDEFASRFAK----DGITKIVTIESSGIAPAV 69 (197)
T ss_dssp HHHHHHHHHHCEEE---TTTEE-ECTTTTSSEE-------CHHHHHHHHHHHHHHTTT----TTCCEEEEETTTTHHHHH
T ss_pred HHHHHHHHHCCEEC---CCCEE-EEHHHHCCCC-------CHHHHHHHHHHHHHHHCC----CCCCEEEEECCCHHHHHH
T ss_conf 99999987379777---99958-8425646543-------799999999999998358----999899986621099999
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHH------------------CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 9985158717876315642011001331------------------0373341440878873223699999999865987
Q gi|254781011|r 94 LLAERLNLPMIYVRKKSKKHGQKSQIEG------------------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 (228)
Q Consensus 94 ~iA~~l~~p~~~vRK~~K~hG~~~~iEG------------------~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~ 155 (228)
.+|..+++|++++||+.|.|+....+++ .+.+|+||+||||++|||+|+.+++++++++|++
T Consensus 70 ~lA~~L~~p~v~~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~rVlIVDDvitTG~T~~~~i~ll~~~Ga~ 149 (197)
T 1y0b_A 70 MTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGAS 149 (197)
T ss_dssp HHHHHHTCCEEEEBSSCCSSCCSSEEEEEEEETTTTEEEEEEEEGGGCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHCCCE
T ss_conf 99998699879998507778988469998984045541146540454169979999720213283699999999987998
Q ss_pred EEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHH
Q ss_conf 856888874176324899999779809996329999
Q gi|254781011|r 156 IQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191 (228)
Q Consensus 156 V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~i 191 (228)
|++++|++++. +.++++++.+.|++++||++++++
T Consensus 150 vvgv~vlvd~~-~~~gr~~l~~~g~~v~SL~~i~~l 184 (197)
T 1y0b_A 150 IAGIGIVIEKS-FQPGRDELVKLGYRVESLARIQSL 184 (197)
T ss_dssp EEEEEEEEEET-TSTHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEEEEEECC-CCCHHHHHHHCCCCEEEEEEEEEE
T ss_conf 99999999847-766688998769978999999885
No 14
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, polymorphism, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=99.94 E-value=1.4e-26 Score=192.76 Aligned_cols=164 Identities=20% Similarity=0.312 Sum_probs=134.9
Q ss_pred HHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHH
Q ss_conf 99999998659768207898673118726401426213579899999999999986642175666789982231257889
Q gi|254781011|r 14 ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFAT 93 (228)
Q Consensus 14 ~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~ 93 (228)
+.-.+.|.+ .++-.|+-| +-|. .|.|...++++|+.++.+++.+++.+.+... .++|.|+|+|++|+|+|+
T Consensus 3 ~~~~~~l~~--~i~~~~dfP---~~Gi---~F~Di~~ll~dp~~~~~~~~~l~~~~~~~~~-~~~D~Ivgie~~Gi~la~ 73 (180)
T 1zn8_A 3 DSELQLVEQ--RIRSFPDFP---TPGV---VFRDISPVLKDPASFRAAIGLLARHLKATHG-GRIDYIAGLDSRGFLFGP 73 (180)
T ss_dssp CHHHHHHHT--TCEEEETCS---STTC---EEEECHHHHHSHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTTHHHHHH
T ss_pred HHHHHHHHH--HCCCCCCCC---CCCC---EEEECCHHHCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCCCEEEHH
T ss_conf 789999998--374659999---8992---5897844761999999999999999987456-788899982566436016
Q ss_pred HHHHHCCCCEEEEECCCCCC--------------HHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99851587178763156420--------------1100133103733414408788732236999999998659878568
Q gi|254781011|r 94 LLAERLNLPMIYVRKKSKKH--------------GQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228)
Q Consensus 94 ~iA~~l~~p~~~vRK~~K~h--------------G~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228)
++|.++++|++++||+.|.. ++....++.+.+|+||+|||||+|||+|+.+++++++++|++|+++
T Consensus 74 ~lA~~l~~p~v~~RK~~k~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~rVlIVDDvlaTGgT~~a~~~ll~~~Ga~vvg~ 153 (180)
T 1zn8_A 74 SLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLEC 153 (180)
T ss_dssp HHHHHHTCEEEEEEETTCCCSSEEEEEEEETTEEEEEEEETTSSCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHCCCCEEEEEECCCCCCCCEEEEEEEEECCCCEEEECCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHCCCEEEEE
T ss_conf 88997299828999668788861799998664564068850554589889999546340818999999999879989999
Q ss_pred EEEEECCCCHHHHHHHHHCCCEEEEECCHH
Q ss_conf 888741763248999997798099963299
Q gi|254781011|r 160 IGLFFYDIFPEVPARFRENNIKLHYLATWN 189 (228)
Q Consensus 160 ~vii~~~~~~~~~~~l~~~gi~~~sl~t~~ 189 (228)
+|++++. +.+|++++ .+++++||++++
T Consensus 154 ~~iie~~-~~~gr~~l--~~~pv~SL~~~e 180 (180)
T 1zn8_A 154 VSLVELT-SLKGREKL--APVPFFSLLQYE 180 (180)
T ss_dssp EEEEEEG-GGCHHHHH--TTSCEEEEEEEC
T ss_pred EEEEECC-CCCHHHHC--CCCCEEEEEEEC
T ss_conf 9999857-77878855--799758999869
No 15
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=99.93 E-value=8.9e-27 Score=194.03 Aligned_cols=156 Identities=20% Similarity=0.232 Sum_probs=132.5
Q ss_pred CEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEE
Q ss_conf 76820789867311872640142621357989999999999998664217566678998223125788999851587178
Q gi|254781011|r 25 AVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI 104 (228)
Q Consensus 25 ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~ 104 (228)
+++..|+-| +-|. .|.|...++++|+.++.+++.+++.+.+.+...++|+|+|++++|+|+|+++|.++++||+
T Consensus 13 ~i~~~~dfP---~~gi---~f~Dit~ll~dp~~~~~i~~~la~~l~e~~~~~~~D~Vvg~e~~Gi~la~~lA~~L~~p~v 86 (187)
T 1g2q_A 13 ALHQYPNFP---SEGI---LFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGFV 86 (187)
T ss_dssp HCEEETTCS---STTC---CEEECHHHHHSHHHHHHHHHHHHHHHHHHCTTSCCCEEEEETTTHHHHHHHHHHHHTCEEE
T ss_pred HCCCCCCCC---CCCC---EEEECCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEE
T ss_conf 518889799---9994---1770824654999999999999999998617679879998345753558999998699848
Q ss_pred EEECCCCC--------------CHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHH
Q ss_conf 76315642--------------0110013310373341440878873223699999999865987856888874176324
Q gi|254781011|r 105 YVRKKSKK--------------HGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE 170 (228)
Q Consensus 105 ~vRK~~K~--------------hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~ 170 (228)
++||+.|. +++....++.+.+|+||+|||||+|||+|+.+++++++++|++|++++|++++. +.+
T Consensus 87 ~~RK~~kl~~~~~~~~~~~~~~~~~l~~~~~~i~~G~rVlIVDDvi~TGgT~~a~~~ll~~~Ga~Vv~~~vlid~~-~~~ 165 (187)
T 1g2q_A 87 PVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFVMELD-FLK 165 (187)
T ss_dssp EEEETTCSCSSEEEEEEECSSCEEEEEEETTSSCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEEEEEEEEECC-CSS
T ss_pred EEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECC-CCC
T ss_conf 9973687886404798751565417888614446786799983004037699999999998799899999999848-778
Q ss_pred HHHHHHHCCCEEEEECCHHH
Q ss_conf 89999977980999632999
Q gi|254781011|r 171 VPARFRENNIKLHYLATWND 190 (228)
Q Consensus 171 ~~~~l~~~gi~~~sl~t~~~ 190 (228)
|.++| +++++||+.++.
T Consensus 166 g~~~l---~~pv~sLi~~~~ 182 (187)
T 1g2q_A 166 GRSKL---NAPVFTLLNAQK 182 (187)
T ss_dssp CCCCC---SSCEEECC----
T ss_pred HHHHC---CCCEEEEEEEEE
T ss_conf 17773---997199998760
No 16
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, catalytic loop; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=99.93 E-value=1.2e-25 Score=186.77 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=130.0
Q ss_pred CEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEE
Q ss_conf 76820789867311872640142621357989999999999998664217566678998223125788999851587178
Q gi|254781011|r 25 AVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI 104 (228)
Q Consensus 25 ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~ 104 (228)
.++-.|+-| ++|.. |+|...++++|+.++.+++.+++.+.. .++|.|+|++++|+|+|+.+|.++++|++
T Consensus 11 ~i~~~~dfP---~~Gi~---F~Di~~il~~P~~~~~l~~~la~~~~~----~~~d~Vvgie~~Gi~lA~~lA~~Lg~p~v 80 (186)
T 1l1q_A 11 LIKTIPDFP---TKGIA---FKDLSDILSTPAALDAVRKEVTAHYKD----VPITKVVGIESRGFILGGIVANSLGVGFV 80 (186)
T ss_dssp TCEEETTCS---STTCC---EEECHHHHTCHHHHHHHHHHHHHHTTT----SCCCEEEEESGGGHHHHHHHHHHHTCEEE
T ss_pred HCCCCCCCC---CCCCE---EEECHHHHCCHHHHHHHHHHHHHHCCC----CCCCEEEEECCCCHHHHHHHHHHCCCCEE
T ss_conf 358889899---99941---784824757999999999999997066----99979998455444778999998199878
Q ss_pred EEECCCC------------CCHHHHHHH---HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE--EEEEECCC
Q ss_conf 7631564------------201100133---103733414408788732236999999998659878568--88874176
Q gi|254781011|r 105 YVRKKSK------------KHGQKSQIE---GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG--IGLFFYDI 167 (228)
Q Consensus 105 ~vRK~~K------------~hG~~~~iE---G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~--~vii~~~~ 167 (228)
++||..| +||+...+| +.+.+|+|||||||+++||+|+..++++++++|++|.++ +|+++. .
T Consensus 81 ~~rk~~~~~~~~~~~~~~~~~~~~~~iei~~~~l~~G~rVLIVDDvl~TGgT~~a~~~ll~~~Ga~v~~v~v~vvie~-~ 159 (186)
T 1l1q_A 81 ALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLYEI-E 159 (186)
T ss_dssp EEEETTSSCSSEEEEEEEETTEEEEEEEEEGGGCCTTCCEEEEEEEESSSHHHHHHHHHHHHTTCCGGGEEEEEEEEC-G
T ss_pred EEEECCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCEEEEEEEHHHHCHHHHHHHHHHHHCCCCEEEEEEEEEEEC-C
T ss_conf 776137888505999986157766079987120378998999953433164899999999987994789999999985-7
Q ss_pred CHHHHHHHHHCCCEEEEECC
Q ss_conf 32489999977980999632
Q gi|254781011|r 168 FPEVPARFRENNIKLHYLAT 187 (228)
Q Consensus 168 ~~~~~~~l~~~gi~~~sl~t 187 (228)
+.+|+++|.+.+++++||+.
T Consensus 160 ~~~Gre~l~~~~i~v~SL~k 179 (186)
T 1l1q_A 160 ALKGREKVGQKCTRLFSVIR 179 (186)
T ss_dssp GGCHHHHHTTTCCCEEEEEE
T ss_pred CCCHHHHHHCCCCCEEEEEE
T ss_conf 78858885068973899872
No 17
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=99.89 E-value=4.3e-24 Score=176.55 Aligned_cols=146 Identities=24% Similarity=0.339 Sum_probs=123.8
Q ss_pred CCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98673118726401426213579899999999999986642175666789982231257889998515871787631564
Q gi|254781011|r 32 NPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK 111 (228)
Q Consensus 32 g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K 111 (228)
.+.+|--| |++.+.++++|..++.+++.+++.+.. .++|+|+|+|++|+|+|+.+|..|++|++++||+.|
T Consensus 94 ~~rilpG~-----~vy~s~ll~dP~~l~~lG~~lA~~~~~----~~iD~Vvgv~~~GiplA~~vA~~LgvP~v~~rk~~k 164 (291)
T 1o57_A 94 PERILPGG-----YVYLTDILGKPSVLSKVGKLFASVFAE----REIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNK 164 (291)
T ss_dssp GGGEETTT-----EECCTTTTTCHHHHHHHHHHHHHHTTT----SCCSEEEEETTTTHHHHHHHHHHHTCCEEEEBCC--
T ss_pred CCCCCCCC-----EEEHHHHCCCHHHHHHHHHHHHHHCCC----CCCCEEEECCCCCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99525885-----687566406999999999999997377----899799931756699999999996999799996047
Q ss_pred CCH-----------HHHHH------HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH
Q ss_conf 201-----------10013------3103733414408788732236999999998659878568888741763248999
Q gi|254781011|r 112 KHG-----------QKSQI------EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR 174 (228)
Q Consensus 112 ~hG-----------~~~~i------EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~ 174 (228)
.++ ..+.+ ...+.+|+||+||||+++||+|+..++++++++||+|++++|++++. .+.++
T Consensus 165 ~~~~~~i~~~~~s~~~~~~~~~~~~~~~l~~g~rVLIVDDvi~tG~T~~~~i~llre~GA~vvgi~VlVd~~---~~~~r 241 (291)
T 1o57_A 165 VTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLVEAE---GVDER 241 (291)
T ss_dssp ---CCEEEEEEECSSCCSEEEEEEEGGGSCTTCEEEEEEEEESSSHHHHHHHHHTGGGTCEEEEEEEEEEES---SCTTS
T ss_pred CCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEEECC---CHHHH
T ss_conf 789856999887144764225651123357885699842423327789999999998799799999999897---43546
Q ss_pred HHHCCCEEEEECCHH
Q ss_conf 997798099963299
Q gi|254781011|r 175 FRENNIKLHYLATWN 189 (228)
Q Consensus 175 l~~~gi~~~sl~t~~ 189 (228)
+.+.++++++|.+++
T Consensus 242 l~~~~~sl~sL~~id 256 (291)
T 1o57_A 242 LVDEYMSLLTLSTIN 256 (291)
T ss_dssp CCSCCEEEEEEECCC
T ss_pred HHHCCCEEEEEEEEC
T ss_conf 875794499997771
No 18
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.79 E-value=4.4e-19 Score=143.87 Aligned_cols=125 Identities=21% Similarity=0.300 Sum_probs=102.3
Q ss_pred EEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 67311872640142621357989999999999998664217566678998223125788999851587178763156420
Q gi|254781011|r 34 YHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKH 113 (228)
Q Consensus 34 F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~h 113 (228)
|.+..| .|++...++++|+..+.+++.+++.+ . .++|+|+|++++|+|+|+.+|..+++|++++|+..+.+
T Consensus 18 ~~~~~~----~~i~~~~~l~d~~l~~~~a~~la~~~----~-~~~D~vv~i~~~Gi~lA~~lA~~lg~p~v~~~~~~~~~ 88 (175)
T 1vch_A 18 IEPLPG----RRIPLVEFLGDPEFTRAAAEALRPLV----P-KEAEILFTTETSPIPLTHVLAEALGLPYVVARRRRRPY 88 (175)
T ss_dssp EEEETT----EEEECCCCTTCHHHHHHHHHHHGGGS----C-TTCCEEEEESSTHHHHHHHHHHHHTCCEEEEBSSCCTT
T ss_pred CCCCCC----CEEEEHHHHCCHHHHHHHHHHHHHHC----C-CCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 447997----66774576179999999999999872----8-99999995384470768999999698959997213677
Q ss_pred HHHHHH-------------------HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf 110013-------------------310373341440878873223699999999865987856888874176
Q gi|254781011|r 114 GQKSQI-------------------EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDI 167 (228)
Q Consensus 114 G~~~~i-------------------EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~ 167 (228)
...... .....+|+||+|||||+|||+|+.++++.|+++|++|+++++++.++.
T Consensus 89 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~G~rVllVDDvitTG~Tl~a~~~~l~~aGa~vv~v~~i~~~~~ 161 (175)
T 1vch_A 89 MEDPIIQEVQTLTLGVGEVLWLDRRFAEKLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAVFRQGT 161 (175)
T ss_dssp CCSCEEEECCC------CEEEECHHHHHHHTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEEEECSC
T ss_pred CCCCEEEEEEEEEECCCCCEEEECCHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEEEECC
T ss_conf 8987797678651035420564110001128988999984416688899999999986997999999996078
No 19
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=99.34 E-value=5.5e-12 Score=97.60 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=82.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC-CCEEEEECCC----CCCHHHHHHHH---
Q ss_conf 135798999999999999866421756667899822312578899985158-7178763156----42011001331---
Q gi|254781011|r 50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN-LPMIYVRKKS----KKHGQKSQIEG--- 121 (228)
Q Consensus 50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~-~p~~~vRK~~----K~hG~~~~iEG--- 121 (228)
..+|+.+... .+..+++.|.+ .++|+|+|++.||+++|+.+|..++ .|+.+++... ..++....+..
T Consensus 4 ~~~s~~~i~~-~i~~La~~i~~----~~~d~IvgI~rgG~~~a~~la~~L~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 78 (153)
T 1vdm_A 4 VYLTWWQVDR-AIFALAEKLRE----YKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIH 78 (153)
T ss_dssp EECCHHHHHH-HHHHHHHHHHH----HCCSEEEEETTTTHHHHHHHHHHTTSCCEEEEEEECCCC--CCCSSCEEEECCC
T ss_pred EEECHHHHHH-HHHHHHHHHHC----CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEEEECCCC
T ss_conf 9907999999-99999999875----599999998888689999999986897524886534447424467402420243
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 03733414408788732236999999998659878568888741
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
....|++||||||+++||+|+..+++.+++.|++.+.++|++++
T Consensus 79 ~~~~gk~VLiVDDv~~TG~Tl~~~~~~l~~~ga~~v~~avL~~k 122 (153)
T 1vdm_A 79 GDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMK 122 (153)
T ss_dssp SCCBTCEEEEEEEEESSCHHHHHHHHHHHTTTBSEEEEEEEEEC
T ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf 23589989997253156847999999998659978999999998
No 20
>2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A
Probab=99.08 E-value=1.6e-09 Score=81.58 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=84.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHH--HHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 67899822312578899985158717876315642011--0013310373341440878873223699999999865987
Q gi|254781011|r 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ--KSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 (228)
Q Consensus 78 ~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~--~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~ 155 (228)
-.+|++|..||...|..+|..++.|+.+..|...+.++ ...+.|.+ +|+.|+||||++.||||+.++++.|++.||.
T Consensus 164 ~~vvvsPD~Ga~kra~~~a~~l~~~~~~~~K~R~~~~~v~~~~~~gdV-~gk~vIIVDDii~TGgTl~~aa~~Lk~~GA~ 242 (326)
T 2h06_A 164 NCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDV-KDRVAILVDDMADTCGTICHAADKLLSAGAT 242 (326)
T ss_dssp GCEEEESSGGGHHHHHHHHHHHTCEEEEEEECC------CCEEEESCC-TTEEEEEEEEEESSCHHHHHHHHHHHHTTEE
T ss_pred CCEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCC-CCCEEEEECCHHHCHHHHHHHHHHHHHCCCC
T ss_conf 776986795579999999998289743465552489814246762133-2440588641553326799999999857998
Q ss_pred EEEEEEEEECCCCH-HHHHHHHHCCCEEE
Q ss_conf 85688887417632-48999997798099
Q gi|254781011|r 156 IQDGIGLFFYDIFP-EVPARFRENNIKLH 183 (228)
Q Consensus 156 V~~~~vii~~~~~~-~~~~~l~~~gi~~~ 183 (228)
-+-+ +..++.|. .+.++|.+.+++-.
T Consensus 243 ~V~~--~aTHglfs~~a~e~l~~s~i~~i 269 (326)
T 2h06_A 243 RVYA--ILTHGIFSGPAISRINNACFEAV 269 (326)
T ss_dssp EEEE--EEEEECCCTTHHHHHHHSCEEEE
T ss_pred CCEE--EEECCCCCCHHHHHHHCCCCCEE
T ss_conf 6568--86434458179999864799889
No 21
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=99.05 E-value=2.4e-10 Score=86.92 Aligned_cols=123 Identities=21% Similarity=0.183 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC------CCH------H-----------
Q ss_conf 9999999866421756667899822312578899985158717--87631564------201------1-----------
Q gi|254781011|r 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK------KHG------Q----------- 115 (228)
Q Consensus 61 i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K------~hG------~----------- 115 (228)
....+++.+.+.. .+.++|++++.||+|+|..+|..++.|+ +++||-.- ..| .
T Consensus 9 aG~~LA~~l~~~~--~~~~vVl~ip~Ggv~~a~~iA~~l~~~~d~~~~~ki~~p~~~e~~~gavs~~~~~~~~~~~~~~~ 86 (208)
T 1wd5_A 9 AGALLAEALAPLG--LEAPVVLGLPRGGVVVADEVARRLGGELDVVLVRKVGAPGNPEFALGAVGEGGELVLMPYALRYA 86 (208)
T ss_dssp HHHHHHHHHGGGC--CCSCEEEECTTHHHHHHHHHHHHHTCEEEECCEEEEEETTEEEEEEEEEETTCCEEECTTHHHHS
T ss_pred HHHHHHHHHHHHC--CCCCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCEEECCCCEEEECHHHHHC
T ss_conf 9999999999618--99879991798764999999998512101466750247887101133075599779710364305
Q ss_pred -------------------HHHHHH----CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHH
Q ss_conf -------------------001331----037334144087887322369999999986598785688887417632489
Q gi|254781011|r 116 -------------------KSQIEG----HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVP 172 (228)
Q Consensus 116 -------------------~~~iEG----~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~ 172 (228)
.....+ .-.+|++|+||||+++||.|+..+++.|+++|+.-+-+++.+. .+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gk~ViLVDD~i~TG~Tm~aa~~~L~~~ga~~v~~a~pv~---~~~~~ 163 (208)
T 1wd5_A 87 DQSYLEREAARQRDVLRKRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVA---SPEAV 163 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEEEEEB---CHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEC---CHHHH
T ss_conf 815665788889999998764640258974557878999715133589999999999976999899999856---87788
Q ss_pred HHHHHCCCEEEEECCHH
Q ss_conf 99997798099963299
Q gi|254781011|r 173 ARFRENNIKLHYLATWN 189 (228)
Q Consensus 173 ~~l~~~gi~~~sl~t~~ 189 (228)
+.++.. ..+..+..-+
T Consensus 164 ~~l~~~-~D~v~~~~p~ 179 (208)
T 1wd5_A 164 ERLKAR-AEVVALSVPQ 179 (208)
T ss_dssp HHHHTT-SEEEEEECCT
T ss_pred HHCCCC-CCEEEECCCC
T ss_conf 751667-9989985783
No 22
>3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B}
Probab=99.03 E-value=3e-09 Score=79.74 Aligned_cols=150 Identities=15% Similarity=0.260 Sum_probs=100.5
Q ss_pred HHHHHHHHHHCCCEE---EECCCCEEEECCCCCCEEEECC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 999999998659768---2078986731187264014262--13579899999999999986642175666789982231
Q gi|254781011|r 13 AELVAKMLFEIKAVN---FSPENPYHLTSGIVSPLYIDCR--KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETA 87 (228)
Q Consensus 13 ~~~~a~~L~~~~ai~---~~~~g~F~L~SG~~Sp~Y~d~r--~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~ 87 (228)
++.+|++|-..|+=+ +.+| |.... -||+.. .+-..|. +. ..+.+. ...+ .+|++|-.|
T Consensus 114 a~~va~ll~~~g~d~vitvDlH------~~~i~-~~f~~pv~~l~~~~~----~~----~~~~~~-~~~~-~vvvsPD~G 176 (319)
T 3dah_A 114 AKVVANMLEIAGVERIITMDLH------ADQIQ-GFFDIPVDNIYATPI----LL----GDLRKQ-NYPD-LLVVSPDVG 176 (319)
T ss_dssp HHHHHHHHHHHTCCEEEEESCS------CGGGG-GGCSSCEEEECCHHH----HH----HHHHTT-CCTT-EEEECCSST
T ss_pred HHHHHHHHHHCCCCEEEEECCC------HHHHH-HCCCCCCHHHHCCHH----HH----HHHHHH-CCCC-CEEECCCCC
T ss_conf 9999844400588559995778------48784-166997033312578----88----999974-7987-389856885
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHH--HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 25788999851587178763156420110--0133103733414408788732236999999998659878568888741
Q gi|254781011|r 88 GIPFATLLAERLNLPMIYVRKKSKKHGQK--SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 88 Gip~a~~iA~~l~~p~~~vRK~~K~hG~~--~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
+...+..+|..++.|+.+..|+..+.+.- ..+.|.+ +|+.|+||||++.||+|+.++++.|++.||.-+. ++..+
T Consensus 177 a~kra~~~A~~l~~~~~~~~K~R~~~~~v~~~~~~gdv-~gr~vIIVDDii~TGgTi~~aa~~Lk~~GA~~V~--~~~TH 253 (319)
T 3dah_A 177 GVVRARALAKQLNCDLAIIDKRRPKANVAEVMNIIGEV-EGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVF--AYATH 253 (319)
T ss_dssp THHHHHHHHHHTTCEEEC---------------------CCSEEEEEEEEESSCHHHHHHHHHHHHTTCSCEE--EEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEECCCCC-CCCEEEEECCHHCCCHHHHHHHHHHHHCCCCEEE--EEEEC
T ss_conf 69999998986499889999991899936773144343-7987897373440620199999999977998648--99746
Q ss_pred CCCH-HHHHHHHHCCCEE
Q ss_conf 7632-4899999779809
Q gi|254781011|r 166 DIFP-EVPARFRENNIKL 182 (228)
Q Consensus 166 ~~~~-~~~~~l~~~gi~~ 182 (228)
+.|. ++.+++.+.+++-
T Consensus 254 glfs~~a~e~l~~s~i~~ 271 (319)
T 3dah_A 254 PVLSGGAADRIAASALDE 271 (319)
T ss_dssp ECCCTTHHHHHHTSSCSE
T ss_pred CCCCHHHHHHHHHCCCCE
T ss_conf 644807999986189998
No 23
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=99.02 E-value=2.5e-09 Score=80.33 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=102.4
Q ss_pred HHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHH
Q ss_conf 99999999865976820789867311872640142621357989999999999998664217566678998223125788
Q gi|254781011|r 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFA 92 (228)
Q Consensus 13 ~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a 92 (228)
++.+|++|-..|+=++- .|-+-|.... -||++-.....+. .. +++.+... . .+-.+|++|..|+...+
T Consensus 115 ak~va~lL~~~g~d~vi---t~DlH~~~~~-~~f~~~~~~~~~~--~~----~~~~~~~~-~-~~~~vvVaPD~Ga~~ra 182 (317)
T 1dku_A 115 AKLFANLLETAGATRVI---ALDLHAPQIQ-GFFDIPIDHLMGV--PI----LGEYFEGK-N-LEDIVIVSPDHGGVTRA 182 (317)
T ss_dssp HHHHHHHHHHHTCCEEE---EESCSSGGGG-GGCSSCEEEECSH--HH----HHHHHHTT-T-CCSEEEEESSGGGHHHH
T ss_pred HHHHHHHHHHCCCCEEE---EECCCCHHHH-CCCCCCCCCCCCC--HH----HHHHHHHC-C-CCCCEEECCCCCHHHHH
T ss_conf 99999887624997799---9636848775-0435774100021--46----77777640-7-55554778994379999
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHH
Q ss_conf 9998515871787631564201100--13310373341440878873223699999999865987856888874176324
Q gi|254781011|r 93 TLLAERLNLPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE 170 (228)
Q Consensus 93 ~~iA~~l~~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~ 170 (228)
..+|..++.|+.+..|+....+... .+.|.+ +|+.|+||||++.||||+.++++.|+++||.=+ .++..++.|.+
T Consensus 183 ~~~A~~l~~~~~~~~K~R~~~~~v~~~~~~gdV-~gk~vIIVDDii~TGgTl~~aa~~Lk~~GA~~V--~~~~THglfs~ 259 (317)
T 1dku_A 183 RKLADRLKAPIAIIDKRRPRPNVAEVMNIVGNI-EGKTAILIDDIIDTAGTITLAANALVENGAKEV--YACCTHPVLSG 259 (317)
T ss_dssp HHHHHHTTCCEEEEECC---------CEEESCC-TTCEEEEECSEESSCHHHHHHHHHHHHTTCSEE--EEECSEECCCT
T ss_pred HHHHHHCCCCEEEEEEEECCCCCEEEECCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEE--EEEEECCCCCC
T ss_conf 999998299989999870799941340012354-797899867500146019999999997699778--99965343483
Q ss_pred -HHHHHHHCCCE
Q ss_conf -89999977980
Q gi|254781011|r 171 -VPARFRENNIK 181 (228)
Q Consensus 171 -~~~~l~~~gi~ 181 (228)
+.++|.+.++.
T Consensus 260 ~A~~~l~~s~i~ 271 (317)
T 1dku_A 260 PAVERINNSTIK 271 (317)
T ss_dssp THHHHHHTSSEE
T ss_pred HHHHHHHCCCCC
T ss_conf 799998607998
No 24
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=98.97 E-value=1.1e-08 Score=76.15 Aligned_cols=164 Identities=13% Similarity=0.230 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHCCCEEEECCCCEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHH
Q ss_conf 99999999986597682078986731187264014262135798999999999999866421756667899822312578
Q gi|254781011|r 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPF 91 (228)
Q Consensus 12 ~~~~~a~~L~~~~ai~~~~~g~F~L~SG~~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~ 91 (228)
.+..++..|...|+=+.- .+.+-|..... ||+......++. ..+.+.+.+.+.. ..-.+|++|..||...
T Consensus 136 ~a~~va~~L~~~gvd~vi---tvDlH~~~i~~-ff~~p~~~l~~~--~~~~~~~~~~~~~----~~~~VvVsPD~Ga~kR 205 (379)
T 2ji4_A 136 VSKLLASMMCKAGLTHLI---TMDLHQKEIQG-FFNIPVDNLRAS--PFLLQYIQEEIPD----YRNAVIVAKSPASAKR 205 (379)
T ss_dssp HHHHHHHHHHHTTCCEEE---EESCSSGGGGG-GSSSCEEEECCH--HHHHHHHHHHSTT----GGGEEEEESSGGGHHH
T ss_pred HHHHHHHHHHHCCCCCCE---EEECCCHHHHC-CCCCCCCCCCCH--HHHHHHHHHHCCC----CCCCEEECCCCCHHHH
T ss_conf 688998788752876322---45327677632-778997753230--7689999985156----5676464389778999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCH------HH----------------------H-----HHHHCCCCCCCEEEHHHHHHH
Q ss_conf 89998515871787631564201------10----------------------0-----133103733414408788732
Q gi|254781011|r 92 ATLLAERLNLPMIYVRKKSKKHG------QK----------------------S-----QIEGHLFKGARVLVIEDLVTL 138 (228)
Q Consensus 92 a~~iA~~l~~p~~~vRK~~K~hG------~~----------------------~-----~iEG~~~~g~~vliVDDviTt 138 (228)
+..+|.+++.|+.+.+|+..+.. +. + .+.|. .+|+.|+||||++.|
T Consensus 206 a~~~a~~L~~~~~~~~k~r~~~~~~~v~~r~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~viGD-VkGk~vIIVDDiIdT 284 (379)
T 2ji4_A 206 AQSFAERLRLGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGD-VGGRIAIIVDDIIDD 284 (379)
T ss_dssp HHHHHHHTTCEEEEEC-----------------------------------------CCCEESC-CTTSEEEEEEEEECS
T ss_pred HHHHHHHHCCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC-EEEEEEEEECCHHHH
T ss_conf 9999998599968998762145542320445775433211235443334457664210002301-200389995434331
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCCHH-HHHHHHHCCCE-EEEECCH
Q ss_conf 23699999999865987856888874176324-89999977980-9996329
Q gi|254781011|r 139 GNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE-VPARFRENNIK-LHYLATW 188 (228)
Q Consensus 139 G~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~-~~~~l~~~gi~-~~sl~t~ 188 (228)
|||+.++++.|++.||.-+ .+++.+..|.+ +.+++.+.++. +++--|+
T Consensus 285 GgTl~~aa~~Lk~~GA~~V--~~~~THgvfs~~A~~~l~~s~i~~Iv~TnTI 334 (379)
T 2ji4_A 285 VDSFLAAAETLKERGAYKI--FVMATHGLLSSDAPRRIEESAIDEVVVTNTI 334 (379)
T ss_dssp CHHHHHHHHHHHHTTCCEE--EEEEEEECCCTTHHHHHHHSSCCEEEEESSS
T ss_pred HHHHHHHHHHHHHCCCCEE--EEEEECCCCCCHHHHHHHHCCCCEEEECCCC
T ss_conf 2669999999997699837--9999797688169999972899989986886
No 25
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1
Probab=98.94 E-value=3.6e-09 Score=79.26 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=87.7
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHH-H--
Q ss_conf 2640142621357989999999999998664217566678998223125788999851587178763156420110-0--
Q gi|254781011|r 41 VSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQK-S-- 117 (228)
Q Consensus 41 ~Sp~Y~d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~-~-- 117 (228)
.+|+.=|+.+++-..+.-...++.++..|.+.... +..+++|+..||++|++-++.+++.|....--..+.|+.. .
T Consensus 3 ~~~~~~d~~~vl~s~~~I~~~i~~LA~~I~e~~~~-~~~vligIl~Gg~~fa~~L~~~L~~~~~~~~~~~~~~~~~~~~~ 81 (183)
T 1hgx_A 3 ETPMMDDLERVLYNQDDIQKRIRELAAELTEFYED-KNPVMICVLTGAVFFYTDLLKHLDFQLEPDYIICSSYSGTKSTG 81 (183)
T ss_dssp ----CTTEEEEEECHHHHHHHHHHHHHHHHHHHTT-TCCEEEEETTTTHHHHHHHHTTCCSCCEEEEEEEEC--------
T ss_pred CCCHHHHHHEEECCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC
T ss_conf 76301123179549999999999999999997389-98389996477099999998626887422567877558854388
Q ss_pred H--HH---HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC
Q ss_conf 1--33---1037334144087887322369999999986598785688887417
Q gi|254781011|r 118 Q--IE---GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD 166 (228)
Q Consensus 118 ~--iE---G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~ 166 (228)
. +. -...+|++||+|||++.||.|+..+++.+++.++.-+.++|++++.
T Consensus 82 ~~~~~~~~~~~~~gk~VLlVDDI~dtG~Tl~~~~~~l~~~~p~si~~avL~dK~ 135 (183)
T 1hgx_A 82 NLTISKDLKTNIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLKVCTLCDKD 135 (183)
T ss_dssp -CEEEECCSSCCTTSEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEEEC
T ss_pred CCEEECCCCCHHCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEEEEEEECC
T ss_conf 510312664000353321354236565569999999973899789999999707
No 26
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Probab=98.92 E-value=6e-09 Score=77.82 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=82.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCCCHHHH--HH--HH--
Q ss_conf 135798999999999999866421756667899822312578899985158717--87631564201100--13--31--
Q gi|254781011|r 50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKKHGQKS--QI--EG-- 121 (228)
Q Consensus 50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~hG~~~--~i--EG-- 121 (228)
.+++.-+..+. +..++..|.+.....++.+++|+..||+++|+.++..++.|. .+++-....++..+ .+ ..
T Consensus 7 ilis~~~I~~~-i~rLA~qI~e~~~~~~~~vlvgI~~GG~~~a~~L~~~l~~~~~i~~~~~~~y~~~~~~~~~~~~~~~~ 85 (177)
T 3ohp_A 7 VMISEQEVAQR-IRELGQQITEHYQGSSDLVLVGLLRGSFVFMADLARQIHLTHQVDFMTASSYGNSMQSSRDVRILKDL 85 (177)
T ss_dssp EEECHHHHHHH-HHHHHHHHHHHTTTCSCEEEEEETTTTHHHHHHHHHTCCSCCEEEEEEECC--------CCCCEEECC
T ss_pred EEECHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCEEECCC
T ss_conf 97289999999-99999999997389997799998168368999999851897025548988851334678861584488
Q ss_pred -CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf -03733414408788732236999999998659878568888741
Q gi|254781011|r 122 -HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 122 -~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
...+|++|||||||+-||.|+..+++.+++.|+.-+.++|++++
T Consensus 86 ~~~~~gk~VLiVDDI~dTG~Tl~~~~~~l~~~~p~~v~~avL~dK 130 (177)
T 3ohp_A 86 DDDIKGKDVLLVEDIIDTGNTLNKVKEILALREPKSIRICTLLDK 130 (177)
T ss_dssp SSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEEC
T ss_pred CCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf 756689979999407745799999999998589988999999982
No 27
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, salvage of nucleosides and nucleotides; HET: GOL; 1.98A {Bacillus anthracis}
Probab=98.83 E-value=1.6e-08 Score=75.03 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCCCHHHH--HH--HH---
Q ss_conf 35798999999999999866421756667899822312578899985158717--87631564201100--13--31---
Q gi|254781011|r 51 LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKKHGQKS--QI--EG--- 121 (228)
Q Consensus 51 ~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~hG~~~--~i--EG--- 121 (228)
+++.-+. ...+..++..|.+++.. +..+++|+..||+++|+.++..++.|. .+++...-..++.. .+ ..
T Consensus 12 l~s~e~I-~~~i~~lA~~I~~~~~~-~~~viIgIl~GG~~fa~~L~~~L~~~~~~~~~~~s~y~~~~~~~~~~~~~~~~~ 89 (186)
T 3o7m_A 12 LISEEQL-QEKVKELALQIERDFEG-EEIVVIAVLKGSFVFAADLIRHIKNDVTIDFISASSYGNQTETTGKVKLLKDID 89 (186)
T ss_dssp EECHHHH-HHHHHHHHHHHHHHTTT-SCEEEEEETTTTHHHHHHHHTTCCSCEEEEEEEEEECC-------CEEEEECCC
T ss_pred ECCHHHH-HHHHHHHHHHHHHHCCC-CCEEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCEECCCEEECCCCC
T ss_conf 6589999-99999999999987599-976999996797899999987237883057899997389857758231625887
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 03733414408788732236999999998659878568888741
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
...+|++|||||||+-||.|+..+++.+.+.|+.-+.++|++++
T Consensus 90 ~~i~gk~VLlVDDVlDTG~TL~~~~~~l~~~~~~~v~~avL~~k 133 (186)
T 3o7m_A 90 VNITGKNVIVVEDIIDSGLTLHFLKDHFFMHKPKALKFCTLLDK 133 (186)
T ss_dssp SCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEEC
T ss_pred CCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 57589889999425511478999999987449991899999994
No 28
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage enzyme; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB: 1a96_A* 1a95_A 1a98_A 1a97_A*
Probab=98.81 E-value=4.6e-09 Score=78.57 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=74.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC-CCCCC---HHHHHHHHCCC
Q ss_conf 213579899999999999986642175666789982231257889998515871787631-56420---11001331037
Q gi|254781011|r 49 RKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRK-KSKKH---GQKSQIEGHLF 124 (228)
Q Consensus 49 r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK-~~K~h---G~~~~iEG~~~ 124 (228)
+..+|+.+.. ..+..++..|.+.. ++|.|+|++.||+++|+.+|..+++|.++... ..... +..........
T Consensus 4 K~~~sw~~i~-~~~~~La~~i~~~~---~~d~ivgI~rGG~~~a~~L~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 79 (152)
T 1nul_A 4 KYIVTWDMLQ-IHARKLASRLMPSE---QWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEG 79 (152)
T ss_dssp EEECCHHHHH-HHHHHHHHHHCSGG---GCSEEEEEETTTHHHHHHHHHHHTCCCEEEEEEEC--------CEEEECCSS
T ss_pred CEEECHHHHH-HHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEECCC
T ss_conf 6881799999-99999999998668---9989999888649999999998588827999987616554354378741046
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 33414408788732236999999998659878568888741
Q gi|254781011|r 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
+|++||||||++.||.|+..+.+.+++. ..++++..
T Consensus 80 ~gk~VLiVDDI~DtG~Tl~~i~~~l~~~-----~~a~l~~K 115 (152)
T 1nul_A 80 DGEGFIVIDDLVDTGGTAVAIREMYPKA-----HFVTIFAK 115 (152)
T ss_dssp CCTTEEEEEEEECTTSSHHHHHHHCTTS-----EEEEEEEC
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCC-----EEEEEEEC
T ss_conf 8972699950315418999999866776-----69999986
No 29
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis}
Probab=98.80 E-value=2.2e-08 Score=74.12 Aligned_cols=117 Identities=17% Similarity=0.160 Sum_probs=81.8
Q ss_pred ECCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCCCHHHH--H--H
Q ss_conf 2621-35798999999999999866421756667899822312578899985158717--87631564201100--1--3
Q gi|254781011|r 47 DCRK-LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKKHGQKS--Q--I 119 (228)
Q Consensus 47 d~r~-~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~hG~~~--~--i 119 (228)
|..+ ++++-+. ...++.+|..|.++... +..+++|+..||+++|+-++.+++.|. .+++-..-.+++.+ . +
T Consensus 11 d~~~vl~s~~~I-~~~i~rLA~~I~~~~~~-~~~viigil~GG~~fa~~L~~~l~~~~~i~~~~~~~y~~~~~~~~~~~~ 88 (185)
T 2geb_A 11 DIEEILITEEQL-KAKVKELGEMITRDYEG-KDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKI 88 (185)
T ss_dssp GEEEEEECHHHH-HHHHHHHHHHHHHHTTT-SCEEEEEETTTTHHHHHHHHHTCCSCCEEEEEEEEECSTTHHHHCCEEE
T ss_pred HHHHEECCHHHH-HHHHHHHHHHHHHHCCC-CCEEEEEEECCCHHHHHHHHHHEEEEEEEEEEEEEEECCCCCCCCCEEE
T ss_conf 075663699999-99999999999997499-9739999957854799998643233135678876420687046785588
Q ss_pred HH---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 31---03733414408788732236999999998659878568888741
Q gi|254781011|r 120 EG---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 120 EG---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
.. ...+|++|||||||+-||.|+..+++.+.+.|..-+-++|++++
T Consensus 89 ~~~~~~~i~gk~VLlVDDVldTG~TL~~~~~~l~~~~~~si~~~vL~~k 137 (185)
T 2geb_A 89 IKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDK 137 (185)
T ss_dssp EECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEEC
T ss_pred ECCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 1567527899989999505443799999999998639985899789980
No 30
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=98.80 E-value=2.9e-08 Score=73.32 Aligned_cols=112 Identities=16% Similarity=0.245 Sum_probs=86.1
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHH--HHHHCCCCCCCEEEHHHHHHHHHHH
Q ss_conf 99986642175666789982231257889998515871787631564201100--1331037334144087887322369
Q gi|254781011|r 65 TAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKS--QIEGHLFKGARVLVIEDLVTLGNSM 142 (228)
Q Consensus 65 ~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vRK~~K~hG~~~--~iEG~~~~g~~vliVDDviTtG~S~ 142 (228)
+++.+.++. +-.+|++|..||.-.+..+|..++.|+.+..|..+..+... .+.|. .+|+.|+||||++.||||+
T Consensus 146 l~~~~~~~~---~~~vvvsPD~g~~kra~~~a~~l~~~~~~~~k~r~~~~~~~~~~~~gd-v~g~~viIvDDii~tGgTl 221 (284)
T 1u9y_A 146 LAEYVKDKL---NDPIVLAPDKGALEFAKTASKILNAEYDYLEKTRLSPTEIQIAPKTLD-AKDRDVFIVDDIISTGGTM 221 (284)
T ss_dssp HHHHHTTTC---SSCEEEESSGGGHHHHHHHHHHHTCCEEEBC----------CCBSSCC-CTTCCEEEEEEECSSSHHH
T ss_pred HHHHHHHHC---CCCEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCC-CCCCEEEEECCHHHHHHHH
T ss_conf 999998653---686898479865789999998576632342023456640588313345-5665379974545426779
Q ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCH-HHHHHHHHCCCEE
Q ss_conf 999999986598785688887417632-4899999779809
Q gi|254781011|r 143 FEFVKVIRDSGGIIQDGIGLFFYDIFP-EVPARFRENNIKL 182 (228)
Q Consensus 143 ~~~i~~l~~~g~~V~~~~vii~~~~~~-~~~~~l~~~gi~~ 182 (228)
.++++.|++.||.=+ .+.+.++.|. .+.+++.+.+++-
T Consensus 222 ~~aa~~Lk~~GA~~V--~~~~THgifs~~a~~~l~~~~i~~ 260 (284)
T 1u9y_A 222 ATAVKLLKEQGAKKI--IAACVHPVLIGDALNKLYSAGVEE 260 (284)
T ss_dssp HHHHHHHHHTTCCSE--EEEEEECCCCTTHHHHHHHHTCSE
T ss_pred HHHHHHHHHCCCCEE--EEEEECCCCCHHHHHHHHHCCCCE
T ss_conf 999999986699869--999979738847999997389998
No 31
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis MB4} SCOP: c.61.1.1 PDB: 1r3u_A*
Probab=98.78 E-value=2.5e-08 Score=73.73 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=83.7
Q ss_pred EEEECCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCCCHHHH--H
Q ss_conf 01426213-5798999999999999866421756667899822312578899985158717--87631564201100--1
Q gi|254781011|r 44 LYIDCRKL-ISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKKHGQKS--Q 118 (228)
Q Consensus 44 ~Y~d~r~~-~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~hG~~~--~ 118 (228)
.+=|...+ ++.-+.... ++.+|..|.++... +.-+++|+..||++||+.++..++.|. .+++-..-.+++.. .
T Consensus 28 ~~~di~~ilis~~~I~~~-I~rLA~qI~~~~~~-~~~vlvgIl~GG~~fa~~L~~~L~~~~~i~~i~~~~y~~~~~~~g~ 105 (205)
T 1yfz_A 28 PMEDIEEILITEEQLKAK-VKELGEMITRDYEG-KDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGI 105 (205)
T ss_dssp GGGSEEEEEECHHHHHHH-HHHHHHHHHHHTTT-SCEEEEEETTTHHHHHHHHHHTCCSCCEEEEEEEEECSHHHHHHCC
T ss_pred CHHHHHHCCCCHHHHHHH-HHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 423175351699999999-99999999997499-9649999925952078766541323434536999850687556885
Q ss_pred --HHH---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf --331---03733414408788732236999999998659878568888741
Q gi|254781011|r 119 --IEG---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 119 --iEG---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
+.. ...+|++|||||||+-||.|+..+++.+++.|+.-+.++|++++
T Consensus 106 ~~~~~~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~l~~~~p~~i~~avL~dK 157 (205)
T 1yfz_A 106 VKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDK 157 (205)
T ss_dssp EEEEECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEEC
T ss_pred EEEECCCCCCCCCCEEEEEECEECHHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 5781576647789979999332235699999999998639980779999980
No 32
>2jky_A Hypoxanthine-guanine phosphoribosyltransferase; nucleus, cytoplasm, magnesium, GMP complex, FLIP peptide-plane, glycosyltransferase; HET: 5GP; 2.3A {Saccharomyces cerevisiae} PDB: 2jkz_A*
Probab=98.78 E-value=6e-10 Score=84.35 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=71.7
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE------EEEECCCCC----CHHH
Q ss_conf 262135798999999999999866421756667899822312578899985158717------876315642----0110
Q gi|254781011|r 47 DCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM------IYVRKKSKK----HGQK 116 (228)
Q Consensus 47 d~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~------~~vRK~~K~----hG~~ 116 (228)
+.|..+|+.+. ...+..++++|.. -++|+|+|++.||+++|..+|..|+.|+ .+++-...+ .+..
T Consensus 3 ~~K~~iSw~~i-~~~~~~La~~I~~----~~pD~IVgI~rGG~i~A~~ls~~L~~~~~~~i~i~~i~~s~y~~~~~~~~~ 77 (213)
T 2jky_A 3 NDKQYISYNNV-HQLCQVSAERIKN----FKPDLIIAIGGGGFIPARILRTFLKEPGVPTIRIFAIILSLYEDLNSVGSE 77 (213)
T ss_dssp -CEEECCHHHH-HHHHHTTHHHHHH----HCCSEEEECSGGGHHHHHHHHHHHCCTTSCCCEEEECCCCSEECSSCCCCC
T ss_pred CCCEEECHHHH-HHHHHHHHHHHHC----CCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCC
T ss_conf 55489569999-9999999999758----899999998988899999999985231367655545788988402566761
Q ss_pred -----------H-HHH---HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf -----------0-133---103733414408788732236999999998659878
Q gi|254781011|r 117 -----------S-QIE---GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 (228)
Q Consensus 117 -----------~-~iE---G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V 156 (228)
. ... ....+|++||||||++.||.|+..+++.|++.|+.-
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~gk~VLIVDDi~dTG~Tl~~~~~~L~~~g~~~ 132 (213)
T 2jky_A 78 VEEVGVKVSRTQWIDYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQ 132 (213)
T ss_dssp C---SCCEECCTTSCCCCCCCCCTTCEEEEEEEEESSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 0111100132311124676546689879999542030289999999998539454
No 33
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A* 3acd_A*
Probab=98.78 E-value=4.9e-08 Score=71.89 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=81.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCCCHH---HH-HHHH--
Q ss_conf 135798999999999999866421756667899822312578899985158717--876315642011---00-1331--
Q gi|254781011|r 50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKKHGQ---KS-QIEG-- 121 (228)
Q Consensus 50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~hG~---~~-~iEG-- 121 (228)
.+++.-+....| ..++..|.+++.. +..+++|+..||+++|+.++..+..|+ -+++-..-.... +. .+..
T Consensus 12 ills~~~I~~~i-~rLA~~I~~~~~~-~~~viigIl~Gg~~fa~~L~~~L~~~~~~~~i~~s~y~~~~~~~~~~~~~~~~ 89 (181)
T 2ywu_A 12 VQISAEAIKKRV-EELGGEIARDYQG-KTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISSYGNAFKSSGEVELLKDL 89 (181)
T ss_dssp CCBCHHHHHHHH-HHHHHHHHHHTTT-CCCEEEEEETTTHHHHHHHHTTCCSCCEEEEEEEC------------CEEECC
T ss_pred EEECHHHHHHHH-HHHHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEECCCC
T ss_conf 985699999999-9999999998289-98479999577428899998752777555522788607874678836661579
Q ss_pred -CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf -0373341440878873223699999999865987856888874
Q gi|254781011|r 122 -HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228)
Q Consensus 122 -~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228)
...+|++|||||||+-||.|+..+++.+++.++.-+.++|+++
T Consensus 90 ~~~~~gk~VliVDDVlDTG~TL~~~~~~l~~~~p~~i~~avL~d 133 (181)
T 2ywu_A 90 RLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLS 133 (181)
T ss_dssp CSCCTTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 86878980799988872755299999999836998899999997
No 34
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxantine-guanine phosphoribosyltransferase, 2-(N- morpholino)ethanesulfonic acid (MES); HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*
Probab=98.71 E-value=8e-08 Score=70.49 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=80.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCC--EEEEECCCCCCHHHH--HH--HH-
Q ss_conf 213579899999999999986642175666789982231257889998515871--787631564201100--13--31-
Q gi|254781011|r 49 RKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLP--MIYVRKKSKKHGQKS--QI--EG- 121 (228)
Q Consensus 49 r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p--~~~vRK~~K~hG~~~--~i--EG- 121 (228)
+.+++.-+.... ++.+|..|.++... +..+++|+..||+++++-+..++..| ..+++-..-..++.+ .+ ..
T Consensus 32 kilis~e~I~~~-I~rLA~qI~e~~~~-~~~viI~Il~Gg~~fa~~L~~~l~~~~~~~~~~~s~y~~~~~s~~~v~~~~~ 109 (204)
T 3hvu_A 32 KVLISEEQIQEK-VLELGAIIAEDYKN-TVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVSSYGHSTVSTGEVKILKD 109 (204)
T ss_dssp EEEECHHHHHHH-HHHHHHHHHHHTSS-SCCEEEEETTTTHHHHHHHHHTCCSCCEEEEEEEEECSGGGTTSCCEEEEEC
T ss_pred EEECCHHHHHHH-HHHHHHHHHHHCCC-CCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCEEEECC
T ss_conf 897489999999-99999999997499-9719999915758999999973188756754899996698762684688147
Q ss_pred --CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf --03733414408788732236999999998659878568888741
Q gi|254781011|r 122 --HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 122 --~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
...+|++|||||||+-||.|+..+++.+.+.|+.-+.++|++++
T Consensus 110 ~~~~i~gk~VLlVDDIlDTG~Tl~~~~~~l~~~~p~sv~~avLl~K 155 (204)
T 3hvu_A 110 LDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDK 155 (204)
T ss_dssp CSSCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEEC
T ss_pred CCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 8857699989997024307499999999999649981689999995
No 35
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Probab=98.61 E-value=1.8e-07 Score=68.25 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=80.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHC------CCCEEEEECCCCCCHH-----HH
Q ss_conf 213579899999999999986642175666789982231257889998515------8717876315642011-----00
Q gi|254781011|r 49 RKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERL------NLPMIYVRKKSKKHGQ-----KS 117 (228)
Q Consensus 49 r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l------~~p~~~vRK~~K~hG~-----~~ 117 (228)
+.+++..+..+.|.. ++..|.+.....++.+++|+..||+++|+.+...+ ..|+.++.-....++. +.
T Consensus 5 ~~l~s~~eI~~~I~r-lA~qI~e~~~g~~~~vligi~~Gg~~fa~~L~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 83 (181)
T 1ufr_A 5 AELMNAPEMRRALYR-IAHEIVEANKGTEGLALVGIHTRGIPLAHRIARFIAEFEGKEVPVGVLDITLYRDDLTEIGYRP 83 (181)
T ss_dssp EEEEEHHHHHHHHHH-HHHHHHHHHTSSTTEEEEEETTTHHHHHHHHHHHHHHHHCSCCCEEEEEEEC-----------C
T ss_pred EEECCHHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 498899999999999-9999999669998889999606289999999998775328986358898888636444478752
Q ss_pred HHH----HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEEEEECC
Q ss_conf 133----103733414408788732236999999998659-8785688887417
Q gi|254781011|r 118 QIE----GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG-GIIQDGIGLFFYD 166 (228)
Q Consensus 118 ~iE----G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g-~~V~~~~vii~~~ 166 (228)
.+. ....+|++||||||++-||.|+..+++.+.+.| ..++-+++++++.
T Consensus 84 ~~~~~~~~~~l~gk~VLIVDDIlDTG~TL~~~~~~l~~~g~~~~v~~avL~kk~ 137 (181)
T 1ufr_A 84 QVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRPRRIYLAVLVDRG 137 (181)
T ss_dssp EEEEEEECSCCTTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEECC
T ss_pred EEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 441356776656856999842026560699999999873999569999997387
No 36
>2jbh_A HHGP; glycosyltransferase, PRTFDC1, transferase, purine salvage; HET: 5GP; 1.7A {Homo sapiens}
Probab=98.61 E-value=1.3e-07 Score=69.14 Aligned_cols=120 Identities=25% Similarity=0.335 Sum_probs=81.8
Q ss_pred EEEECCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC---------CC--EEEEECCCC
Q ss_conf 0142621-35798999999999999866421756667899822312578899985158---------71--787631564
Q gi|254781011|r 44 LYIDCRK-LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN---------LP--MIYVRKKSK 111 (228)
Q Consensus 44 ~Y~d~r~-~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~---------~p--~~~vRK~~K 111 (228)
|.-|... ++++-+....| +.+|..|.++... +..+++|+..||++|++-++.+|+ .| +-|+|-..-
T Consensus 35 y~~~~~~Ili~~~~I~~rI-~rLA~eI~~~~~~-~~~viIgIl~Gg~~fa~dL~~~L~~~~~~~~~~~~~~vdfi~vssY 112 (225)
T 2jbh_A 35 YYGDLEYVLIPHGIIVDRI-ERLAKDIMKDIGY-SDIMVLCVLKGGYKFXADLVEHLKNISRNSDRFVSMKVDFIRLKSY 112 (225)
T ss_dssp GTTSEEEEEECHHHHHHHH-HHHHHHHHHHHTT-SCEEEEEEETTTHHHHHHHHHHHHHHHHHSSCCCCEEEEEEEEC--
T ss_pred HHCCCCEEECCHHHHHHHH-HHHHHHHHHHCCC-CCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCCEEEEEEEEECC
T ss_conf 2154168923999999999-9999999998299-9849999837969624899999876403667654247899997137
Q ss_pred CCH----HHHHHHH---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 201----1001331---03733414408788732236999999998659878568888741
Q gi|254781011|r 112 KHG----QKSQIEG---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 112 ~hG----~~~~iEG---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
... ....+.. ...+|++|||||||+-||.|+..+++.|++.|+.-+.++|+++.
T Consensus 113 ~~~~~~~~~~i~~~~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~L~~~~pksV~~avLl~K 173 (225)
T 2jbh_A 113 RNDQSMGEMQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVK 173 (225)
T ss_dssp --------CCEESSSCGGGGTTSEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEEE
T ss_pred CCCCCCCCEEEEECCCHHHHHCCCEEEEECEECHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 9976346617980587455410505997121123169999999996469998999999981
No 37
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=98.56 E-value=2.6e-07 Score=67.19 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCCCC------------H---HHHH
Q ss_conf 999999999999866421756667899822312578899985158717--8763156420------------1---1001
Q gi|254781011|r 56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSKKH------------G---QKSQ 118 (228)
Q Consensus 56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K~h------------G---~~~~ 118 (228)
+.|..+...+++.+.......++|+|+++|-.|+|.|...|..+++|+ .++|....+- + +-+.
T Consensus 273 ~~R~~lG~~La~~~~~~~~~~~~dvV~~vPds~~~aA~g~a~~~gip~~~~likn~y~gRtFI~p~~~~R~~~v~~Kl~~ 352 (504)
T 1ecf_A 273 SARVNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNA 352 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCEEEECTTTTHHHHHHHHHHHTCCBCCCEEECSCCCCCCCCSSSCCCCCCSTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHCCCHHHHEEEEEECCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999986654168777365368995489999999980963543024540115534487578876520002232
Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCC----------CHHHHHHHHH-CCC
Q ss_conf 331037334144087887322369999999986598785688887-------4176----------3248999997-798
Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDI----------FPEVPARFRE-NNI 180 (228)
Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~----------~~~~~~~l~~-~gi 180 (228)
+ -...+|++|++|||-|-.|+|+...++.|+++|++-+.+.+-- .|+. +....+.+.+ .|.
T Consensus 353 ~-~~~i~gk~ivlvDDSIVRGtT~k~ii~~Lr~aGakeIhvri~sPpi~~pc~yGiD~p~~~eLia~~~~~eei~~~iga 431 (504)
T 1ecf_A 353 N-RAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGA 431 (504)
T ss_dssp C-GGGTTTCCEEEEESCCSSSHHHHHHHHHHHHTTCSSEEEEESSCCCCSCCCSSCCCCCGGGCTTTTCCHHHHHHHHTC
T ss_pred C-HHHEECCCEEEEECCHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCC
T ss_conf 3-421313627997530102641999999999769988999977898578754525799978986469999999998599
Q ss_pred EEEEECCHHHHHHHHHHCC------------------CCCHHHHHHHHHHHHHHH
Q ss_conf 0999632999999999888------------------999899999999997299
Q gi|254781011|r 181 KLHYLATWNDILTIAEKLK------------------IFNHDVLEEVRCFLDNPM 217 (228)
Q Consensus 181 ~~~sl~t~~~il~~l~~~~------------------~I~~~~~~~I~~~l~dP~ 217 (228)
.-..-++++++.+.+-..+ ..++.-.+.+++.+.+-.
T Consensus 432 dsl~yls~e~l~~ai~~~~~~~~~~c~~cftG~Yp~~~~~~~~~~~~e~~~~~~~ 486 (504)
T 1ecf_A 432 DGLIFQDLNDLIDAVRAENPDIQQFECSVFNGVYVTKDVDQGYLDFLDTLRNDDA 486 (504)
T ss_dssp SEEEECCHHHHHHHHHTTCTTCCCCBCHHHHCCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHCCCCCCCCCCCCEEECCEECCCCCCHHHHHHHHHHCCHHH
T ss_conf 8799645999999865778876770223454631499979899999998654033
No 38
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI, protein structure initiative, TB structural genomics consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP: c.61.1.1
Probab=98.55 E-value=3.9e-07 Score=65.99 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=75.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCC-------CCCCCEEEEECCCHHHHHHHHHHHC----CC--CEEEEECC-----
Q ss_conf 621357989999999999998664217-------5666789982231257889998515----87--17876315-----
Q gi|254781011|r 48 CRKLISFVRARSMIMDLTAKTVLRNIG-------FESIDIIAGGETAGIPFATLLAERL----NL--PMIYVRKK----- 109 (228)
Q Consensus 48 ~r~~~s~P~~~~~i~~~~~~~i~~~~~-------~~~~d~I~G~a~~Gip~a~~iA~~l----~~--p~~~vRK~----- 109 (228)
.+.+++..+....|.. ++..|.++.. ..+.-+++|+..||++||+-++..+ +. ++.++.-.
T Consensus 13 ~~~lls~~dI~~~I~r-lA~qI~E~~~~~~~~~~~~~~lvlVGIl~GG~~fa~~L~~~L~~~~~~~v~~~~i~~~~y~~~ 91 (201)
T 1w30_A 13 SRELMSAANVGRTISR-IAHQIIEKTALDDPVGPDAPRVVLLGIPTRGVTLANRLAGNITEYSGIHVGHGALDITLYRDD 91 (201)
T ss_dssp EEEEECHHHHHHHHHH-HHHHHHHHTTTTSCCBTTBCCEEEEECTTHHHHHHHHHHHHHHHHHSCCCEEEECCCGGGCC-
T ss_pred CCCCCCHHHHHHHHHH-HHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECC
T ss_conf 3575699999999999-999998743554433368887799997767199999999999874175315788877886056
Q ss_pred CCCCHHHHHHH----HCCCCCCCEEEHHHHHHHHHHHHHHHHHH-HHCCCEEEEEEEEEECC
Q ss_conf 64201100133----10373341440878873223699999999-86598785688887417
Q gi|254781011|r 110 SKKHGQKSQIE----GHLFKGARVLVIEDLVTLGNSMFEFVKVI-RDSGGIIQDGIGLFFYD 166 (228)
Q Consensus 110 ~K~hG~~~~iE----G~~~~g~~vliVDDviTtG~S~~~~i~~l-~~~g~~V~~~~vii~~~ 166 (228)
....+...... -.-.+|++|+||||++-||.|+..+++.+ +..++..+-++|++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~gk~VLlVDDIlDTG~TL~~~~~~ll~~~~p~~V~~avLvdr~ 153 (201)
T 1w30_A 92 LMIKPPRPLASTSIPAGGIDDALVILVDDVLYSGRSVRSALDALRDVGRPRAVQLAVLVDRG 153 (201)
T ss_dssp -------CCCCCBCCTTCSTTCEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEEECC
T ss_conf 44466555433455674657978999940225676899999999852898689999999279
No 39
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Probab=98.53 E-value=4.3e-07 Score=65.75 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=76.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCC------CCCEEEEECCCHHHHHHHHHHHC---CCCE--EEEECCCCCCHHH-
Q ss_conf 2135798999999999999866421756------66789982231257889998515---8717--8763156420110-
Q gi|254781011|r 49 RKLISFVRARSMIMDLTAKTVLRNIGFE------SIDIIAGGETAGIPFATLLAERL---NLPM--IYVRKKSKKHGQK- 116 (228)
Q Consensus 49 r~~~s~P~~~~~i~~~~~~~i~~~~~~~------~~d~I~G~a~~Gip~a~~iA~~l---~~p~--~~vRK~~K~hG~~- 116 (228)
+.+++.-+....| ..++..|.+..... +..+++|+..||++||+-++..+ ..|. -+++-..-..+..
T Consensus 9 kiLis~~eI~~~I-~~LA~eI~e~y~~~~~~~~~~~lvlVgIl~Gg~~fa~~L~r~L~~~~~~~~i~~~~~s~y~~~~~~ 87 (220)
T 1tc1_A 9 KILFTEEEIRTRI-KEVAKRIADDYKGKGLRPYVNPLVLISVLKGSFMFTADLCRALCDFNVPVRMEFICVSSYGEGLTS 87 (220)
T ss_dssp CEEECHHHHHHHH-HHHHHHHHHHHTTSCCBTTTBCEEEEEETTTTHHHHHHHHHHHHHTTCCEEEEEEEEECC------
T ss_pred EEECCHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCC
T ss_conf 6872999999999-999999999834775556778879999877759999999997431278814667876302321246
Q ss_pred -HHHH--H---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf -0133--1---0373341440878873223699999999865987856888874
Q gi|254781011|r 117 -SQIE--G---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228)
Q Consensus 117 -~~iE--G---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228)
..+. . ...+|++|||||||+-||.|+..+++.|++.|+.-+-++|+++
T Consensus 88 ~~~v~~~~~~~~~l~gk~VLIVDDIlDTG~TL~~~~~~L~~~~p~sv~~avLl~ 141 (220)
T 1tc1_A 88 SGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLD 141 (220)
T ss_dssp ---CEEEECCSSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEE
T ss_pred CCCEEECCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 762345046873425876799830420749999999999830999689999997
No 40
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; flexibility, trans CIS peptide bond isomerization, nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1 PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A* 2vfa_A*
Probab=98.51 E-value=8.1e-07 Score=63.93 Aligned_cols=141 Identities=22% Similarity=0.321 Sum_probs=88.5
Q ss_pred CCCEEEECCCC-EEEECCCCCCEEEE--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHC
Q ss_conf 59768207898-67311872640142--6213579899999999999986642175666789982231257889998515
Q gi|254781011|r 23 IKAVNFSPENP-YHLTSGIVSPLYID--CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERL 99 (228)
Q Consensus 23 ~~ai~~~~~g~-F~L~SG~~Sp~Y~d--~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l 99 (228)
..|+.|.++-+ |...+=.--+.|-+ .+.++++-+....|.. ++..|.++..... -+++|+-.||++||+-+..+|
T Consensus 4 ~~~~~~~~~~~g~~~~~f~~~~~y~~~~~~Ilis~~~I~~~I~~-lA~eI~~~y~~k~-~vlVgIL~Gg~~Fa~dL~~~L 81 (217)
T 1z7g_A 4 SPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTER-LARDVMKEMGGHH-IVALCVLKGGYKFFADLLDYI 81 (217)
T ss_dssp CCCEECCTTCCCBCGGGSCCCGGGTTTEEEEEECHHHHHHHHHH-HHHHHHHHHTTSC-EEEEEECSSCCHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCHHHCCCCHHHHHHHCEEECCHHHHHHHHHH-HHHHHHHHCCCCC-EEEEEEECCCHHHHHHHHHHH
T ss_conf 99469589989976023158656741005893289999999999-9999999829997-599999278599999999999
Q ss_pred ---------CCCE--EEEECCCCCC----HHHHHHHH---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf ---------8717--8763156420----11001331---0373341440878873223699999999865987856888
Q gi|254781011|r 100 ---------NLPM--IYVRKKSKKH----GQKSQIEG---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG 161 (228)
Q Consensus 100 ---------~~p~--~~vRK~~K~h----G~~~~iEG---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~v 161 (228)
..|+ -++|-..-.. +....+.. .-.+|++||||||++-||.|+..+++.+.+.|+.-+-++|
T Consensus 82 ~~~~~~~~~~~~~~~df~~~ssy~~~~~~~~~~~~~~~~~~~l~gk~VLiVDDIlDTG~TL~~~~~~l~~~~p~sv~~~~ 161 (217)
T 1z7g_A 82 KALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVAS 161 (217)
T ss_dssp HHHHTTCSSCCCEEEEEECBC----------CCBCCSSCGGGGTTSEEEEEEEECCCHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEECCCCHHHHHHCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 87515776542448889996336886444630343258704165366899604200628999999998476989699999
Q ss_pred EEEC
Q ss_conf 8741
Q gi|254781011|r 162 LFFY 165 (228)
Q Consensus 162 ii~~ 165 (228)
+++.
T Consensus 162 Ll~K 165 (217)
T 1z7g_A 162 LLVK 165 (217)
T ss_dssp EEEE
T ss_pred EEEC
T ss_conf 9984
No 41
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Probab=98.50 E-value=5.1e-07 Score=65.24 Aligned_cols=118 Identities=13% Similarity=0.141 Sum_probs=80.2
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCC-----CCCCCEEEEECCCHHHHHHHHHHHCC---CC--EEEEECCCCCCHHH
Q ss_conf 2621357989999999999998664217-----56667899822312578899985158---71--78763156420110
Q gi|254781011|r 47 DCRKLISFVRARSMIMDLTAKTVLRNIG-----FESIDIIAGGETAGIPFATLLAERLN---LP--MIYVRKKSKKHGQK 116 (228)
Q Consensus 47 d~r~~~s~P~~~~~i~~~~~~~i~~~~~-----~~~~d~I~G~a~~Gip~a~~iA~~l~---~p--~~~vRK~~K~hG~~ 116 (228)
..+.+++..+....+.. ++..|.+... ..++-+++|+-.||++|++-++..+. .| +-+++-...+.++.
T Consensus 23 ~~~~L~t~e~I~~~i~~-lA~qI~~~y~d~~~~~~~plvlV~Vl~Gg~~Fa~dL~r~L~~~~~~~~i~~i~~~sy~~~~~ 101 (211)
T 1pzm_A 23 SARTLVTQEQVWAATAK-CAKKIAADYKDFHLTADNPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGSGVE 101 (211)
T ss_dssp EEEEEECHHHHHHHHHH-HHHHHHHHHGGGTCBTTBCEEEEEETTTTHHHHHHHHHHHHHTTCCEEEEEEBCC-------
T ss_pred CCCEECCHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCC
T ss_conf 20477379999999999-99999998754113689977999982675999999999850467763677888753125765
Q ss_pred HH----HHH---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 01----331---03733414408788732236999999998659878568888741
Q gi|254781011|r 117 SQ----IEG---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 117 ~~----iEG---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
.. +.. ...+|++||||||++-||.|+..+++.+++.|+.-+-++|+++.
T Consensus 102 ~~~~~~~~~~~~~~l~gk~VlIVDDIlDTG~TL~~~~~~l~~~g~~sv~~avLl~K 157 (211)
T 1pzm_A 102 TSGQVRMLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDK 157 (211)
T ss_dssp ------CCBCCSSCCTTCEEEEEEEEESSCHHHHHHHHHHHTTCCSEEEEEEEEEC
T ss_pred CCCEEEECCCCCHHHHHCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf 58715761576033320215897311336616999999998369997999999985
No 42
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding protein, pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Probab=98.44 E-value=7.3e-07 Score=64.21 Aligned_cols=116 Identities=18% Similarity=0.191 Sum_probs=77.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC----CC--EEEEEC-CCCCC-HHHH----
Q ss_conf 135798999999999999866421756667899822312578899985158----71--787631-56420-1100----
Q gi|254781011|r 50 KLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN----LP--MIYVRK-KSKKH-GQKS---- 117 (228)
Q Consensus 50 ~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~----~p--~~~vRK-~~K~h-G~~~---- 117 (228)
.+++.-+..+.| +.++..|.++....+.-+++|+-.||++|++.+...+. .| ..++.- .-+++ +...
T Consensus 6 il~~~~~I~~~i-~~lA~qI~e~~~~~~~~vligil~Gg~~fa~~L~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (181)
T 1a3c_A 6 VILDEQAIRRAL-TRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDE 84 (181)
T ss_dssp EEECHHHHHHHH-HHHHHHHHHHCC----CEEEEESHHHHHHHHHHHHHHHHHHSSCCEEEEEEEECCC--------CCC
T ss_pred EECCHHHHHHHH-HHHHHHHHHHCCCCCCEEEEEECCCEEEHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 963899999999-9999999986689998899987353997288999864221288741101344677425654556763
Q ss_pred -HHHH-C---CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEEEEECC
Q ss_conf -1331-0---3733414408788732236999999998659-8785688887417
Q gi|254781011|r 118 -QIEG-H---LFKGARVLVIEDLVTLGNSMFEFVKVIRDSG-GIIQDGIGLFFYD 166 (228)
Q Consensus 118 -~iEG-~---~~~g~~vliVDDviTtG~S~~~~i~~l~~~g-~~V~~~~vii~~~ 166 (228)
.+.. . -.+|++|+||||++-||.|+..+++.+.+.| +..+-+++++++.
T Consensus 85 ~~~~~~d~~~~l~gk~VliVDDIlDTG~TL~~~~~~l~~~~~~~~v~~avL~dk~ 139 (181)
T 1a3c_A 85 PLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRG 139 (181)
T ss_dssp CEEEEEECSSCCTTSEEEEEEEEESSSHHHHHHHHHHHHHCCCSEEEEEEEEECC
T ss_pred CEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 4786145762125978999940011218999999999743898689999998287
No 43
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii RH} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A
Probab=98.36 E-value=7.8e-07 Score=64.04 Aligned_cols=115 Identities=23% Similarity=0.190 Sum_probs=79.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC-----------CC---EEEEECCCCC--
Q ss_conf 2135798999999999999866421756667899822312578899985158-----------71---7876315642--
Q gi|254781011|r 49 RKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN-----------LP---MIYVRKKSKK-- 112 (228)
Q Consensus 49 r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~-----------~p---~~~vRK~~K~-- 112 (228)
+.++++-+..+.|..+ +..|.++.... .-+++|+-.||++|++.++..|. +| ..|++...-+
T Consensus 47 ~Ilis~~~I~~rI~rL-A~eI~e~y~~~-~lvlIgIl~Gg~~Fa~~L~r~L~~~~~~~~~~~~i~~~~~~~~~~s~~~~~ 124 (233)
T 1fsg_A 47 KILLPGGLVKDRVEKL-AYDIHRTYFGE-ELHIICILKGSRGFFNLLIDYLATIQKYSGRESSVPPFFEHYVRLKSYQND 124 (233)
T ss_dssp EEEECHHHHHHHHHHH-HHHHHHHHTTS-CEEEEEEETTTHHHHHHHHHHHHHHHHHCSSCCSSCSCEEEEEEEEEEETT
T ss_pred EEECCHHHHHHHHHHH-HHHHHHHCCCC-CEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 8932899999999999-99999983999-719999927879999999999987632355444678368999985026886
Q ss_pred CHHHHHH-H---HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 0110013-3---103733414408788732236999999998659878568888741
Q gi|254781011|r 113 HGQKSQI-E---GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 113 hG~~~~i-E---G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
...+... . -...+|++|||||||+-||.|+..+++.|++.|+.-+-++|++++
T Consensus 125 ~~~~~~~~~~~~~~~i~gk~VLIVDDIlDTG~TL~~~~~~L~~~~p~sv~~avLldK 181 (233)
T 1fsg_A 125 NSTGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGPKSMRIATLVEK 181 (233)
T ss_dssp EEEEEEEEECSCGGGGTTCEEEEEEEEESSSHHHHHHHHHHHTTCCSEEEEEEEEEE
T ss_pred CCCCCEEECCCCHHHHCCCEEEEECCEECHHHHHHHHHHHHHCCCCCCEEEEEEEEE
T ss_conf 667851023687677558737995233328799999999997308881589999980
No 44
>1cjb_A Protein (hypoxanthine-guanine phosphoribosyltransferase); malaria, purine salvage, transition state inhibitor; HET: IRP; 2.00A {Plasmodium falciparum} SCOP: c.61.1.1
Probab=98.27 E-value=1.4e-06 Score=62.43 Aligned_cols=122 Identities=20% Similarity=0.179 Sum_probs=80.9
Q ss_pred CCCEEEE--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--------------E
Q ss_conf 2640142--62135798999999999999866421756667899822312578899985158717--------------8
Q gi|254781011|r 41 VSPLYID--CRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--------------I 104 (228)
Q Consensus 41 ~Sp~Y~d--~r~~~s~P~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--------------~ 104 (228)
..+.|-+ .+.++++-+....|.. ++..|.+.... +.-+++|+-.||++|++-++.++..+. .
T Consensus 32 ~p~~y~~~~~kVli~~~~I~~rI~r-LA~eI~~~~~~-~~~vivgIL~Gg~~Fa~dL~r~L~~~~~~~~~~~~~~~~~~~ 109 (231)
T 1cjb_A 32 IPAHYKKYLTKVLVPNGVIKNRIEK-LAYDIKKVYNN-EEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETSKPLFGEH 109 (231)
T ss_dssp CCTTTGGGEEEEEECHHHHHHHHHH-HHHHHHHHHTT-CCEEEEEEETTTHHHHHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred CCHHHHCCCCEEECCHHHHHHHHHH-HHHHHHHHCCC-CCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEE
T ss_conf 8744642413891289999999999-99999998499-976999980587999999999851020465133015667506
Q ss_pred EEECCCCCC--HHHHH-HH---HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf 763156420--11001-33---10373341440878873223699999999865987856888874
Q gi|254781011|r 105 YVRKKSKKH--GQKSQ-IE---GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228)
Q Consensus 105 ~vRK~~K~h--G~~~~-iE---G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228)
|+|-..-+- ..+.. +. -...+|++||||||++-||.|+..+++.|++.|+.-+-++|+++
T Consensus 110 ~i~~~~y~~~~s~~~v~~~~~~~~~i~gk~VLLVDDIlDTG~TL~~l~~~L~~~gpksv~vavLld 175 (231)
T 1cjb_A 110 YVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACLFI 175 (231)
T ss_dssp EEEEEEEETTEEEEEEEEEESCGGGGBTCEEEEEEEEESSSHHHHHHHHHHGGGCBSEEEEEEEEE
T ss_pred EEEEEECCCCCCCCCEEEECCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 999992499755772467247715454070799832100326999999999716999558884441
No 45
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=98.10 E-value=6.5e-06 Score=58.05 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCE--EEEECCCC--CCHHHH-------------H
Q ss_conf 999999999999866421756667899822312578899985158717--87631564--201100-------------1
Q gi|254781011|r 56 RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM--IYVRKKSK--KHGQKS-------------Q 118 (228)
Q Consensus 56 ~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~~p~--~~vRK~~K--~hG~~~-------------~ 118 (228)
..|..+...+++... .++|+|+|+|-.|+|.|...|..+++|+ .++|.... .+-+.. .
T Consensus 257 ~~R~~lG~~La~~~~-----~~~DvV~~VPds~~~aa~gya~~~gip~~~~likn~y~~RtFI~p~~~~r~~~v~~k~~~ 331 (459)
T 1ao0_A 257 SARKNLGKMLAQESA-----VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVRMKLSA 331 (459)
T ss_dssp HHHHHHHHHHHHHHC-----CCCSEEECCTTTTHHHHHHHHHHHCCCBCCCEEECTTCCTTSCCCCHHHHHHTCCSSEEE
T ss_pred HHHHHHHHHHHCCCC-----CCCCEEEECCCCHHHHHHHHHHHHCCCHHHCEEECCCHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 999999997733377-----578278425776388899999870997133424212014322697388999988766554
Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE-------ECCC----------CHHHHHHH-HHCCC
Q ss_conf 331037334144087887322369999999986598785688887-------4176----------32489999-97798
Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF-------FYDI----------FPEVPARF-RENNI 180 (228)
Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii-------~~~~----------~~~~~~~l-~~~gi 180 (228)
+. ...+|++|++|||-+-.|.|+.+.++.|+++|++-+.+.+-- .|+. +....+.+ +..|.
T Consensus 332 ~~-~~i~gk~vvlvDDSIVRGtT~k~iv~~lr~~Gakevh~~~~sPpi~~pc~yGid~~~~~elia~~~~~eei~~~ig~ 410 (459)
T 1ao0_A 332 VR-GVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVKISSPPIAHPCFYGIDTSTHEELIASSHSVEEIRQEIGA 410 (459)
T ss_dssp CH-HHHTTCEEEEEESCCSSSHHHHHHHHHHHHTTCSEEEEEESSCCCCSCCCSCTTTCCSSCCSTTTSCHHHHHHHHTC
T ss_pred HH-HHHCCCCEEEEECCEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCC
T ss_conf 48-77446706999532101302899999997479988999978897367655646789978997579999999998699
Q ss_pred EEEEECCHHHHHHHH
Q ss_conf 099963299999999
Q gi|254781011|r 181 KLHYLATWNDILTIA 195 (228)
Q Consensus 181 ~~~sl~t~~~il~~l 195 (228)
.-..-.+++++.+..
T Consensus 411 dsl~y~s~e~l~~a~ 425 (459)
T 1ao0_A 411 DTLSFLSVEGLLKGI 425 (459)
T ss_dssp SEEEECCHHHHHHHH
T ss_pred CEEEECCHHHHHHHH
T ss_conf 879962799999985
No 46
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg IONS, pyrophosphate, transition state analogue; HET: IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1dqp_A*
Probab=98.05 E-value=4.6e-06 Score=59.00 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=74.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCHHHHHHHHHHHCCCCEE--EEECCCCCCH-HH--HHH--HH
Q ss_conf 13579899999999999986642175-66678998223125788999851587178--7631564201-10--013--31
Q gi|254781011|r 50 KLISFVRARSMIMDLTAKTVLRNIGF-ESIDIIAGGETAGIPFATLLAERLNLPMI--YVRKKSKKHG-QK--SQI--EG 121 (228)
Q Consensus 50 ~~~s~P~~~~~i~~~~~~~i~~~~~~-~~~d~I~G~a~~Gip~a~~iA~~l~~p~~--~vRK~~K~hG-~~--~~i--EG 121 (228)
.+.+..+ -+..+..++++|.+.... .+.-+++|+-.||++|++-+..+++.|+- |++- +.|+ +. +.+ ..
T Consensus 34 il~t~ee-I~~~v~elA~qIne~Yk~~~~~lvvV~VLkG~~~FaadL~r~L~~~~~idfi~v--sSY~g~~s~g~v~i~~ 110 (230)
T 1dqn_A 34 LLATFEE-CKALAADTARRMNEYYKDVAEPVTLVALLTGAYLYASLLTVHLTFPYTLHFVKV--SSYKGTRQESVVFDEE 110 (230)
T ss_dssp EEECHHH-HHHHHHHHHHHHHHHHTTCSSCEEEEEETTTHHHHHHHHHTTCCSCEEEEEECC--EEEECSSCEEEECCHH
T ss_pred EEECHHH-HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEEEE--EECCCCCCCCEEEEEC
T ss_conf 9814999-999999999999998514599859999846779999999975799838999999--7608987564225622
Q ss_pred ---CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf ---03733414408788732236999999998659878568
Q gi|254781011|r 122 ---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228)
Q Consensus 122 ---~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228)
...+|++||||||++-||.|+....+.+++.|+..+-+
T Consensus 111 ~l~~~i~gk~VLIVDDIiDTG~TL~~l~~~L~~~~~~Sv~v 151 (230)
T 1dqn_A 111 DLKQLKEKREVVLIDEYVDSGHTIFSIQEQIKHAKICSCFV 151 (230)
T ss_dssp HHHHHHHCSSEEEEEEEESSSHHHHHHHHHSTTCEEEEEEE
T ss_pred CCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 76412389748997436717446999998775089868999
No 47
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomics, JCSG, PSI, protein structure initiative; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=96.38 E-value=0.0086 Score=37.67 Aligned_cols=100 Identities=15% Similarity=0.223 Sum_probs=62.7
Q ss_pred EEEEECCCHHHHHHHHHHHCC---CCEEEEECCCCCCH----HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899822312578899985158---71787631564201----10013310373341440878873223699999999865
Q gi|254781011|r 80 IIAGGETAGIPFATLLAERLN---LPMIYVRKKSKKHG----QKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDS 152 (228)
Q Consensus 80 ~I~G~a~~Gip~a~~iA~~l~---~p~~~vRK~~K~hG----~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~ 152 (228)
+++.+--+|.++...+...+. +.++-+++..+.+- ..++ .....+++|+|+|-+++||+|+..+++.|++.
T Consensus 85 ~~V~ILRaGl~m~~g~~~~~P~a~~g~i~i~r~~~t~~~~~yy~kl--P~~~~~~~VillDPmlATG~s~~~ai~~L~~~ 162 (221)
T 1o5o_A 85 VVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKL--PPLNDDKEVFLLDPMLATGVSSIKAIEILKEN 162 (221)
T ss_dssp EEEEEETTHHHHHHHHHHHSTTCEECEEEEEECTTTCCEEEEEEEC--CCCCTTCEEEEECSEESSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCEEEEEEC--CCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHC
T ss_conf 8988405664077899997787641378887358888818750107--86634672898778864771299999999865
Q ss_pred CCEEEEEEEEEECCCCHHHHHHHHHC--CCEEEE
Q ss_conf 98785688887417632489999977--980999
Q gi|254781011|r 153 GGIIQDGIGLFFYDIFPEVPARFREN--NIKLHY 184 (228)
Q Consensus 153 g~~V~~~~vii~~~~~~~~~~~l~~~--gi~~~s 184 (228)
|++-.-+++++ - -+.|-+++.+. +++++.
T Consensus 163 G~~~I~~v~~i--a-s~~Gi~~i~~~~P~v~I~t 193 (221)
T 1o5o_A 163 GAKKITLVALI--A-APEGVEAVEKKYEDVKIYV 193 (221)
T ss_dssp TCCEEEEECSE--E-CHHHHHHHHHHCTTCEEEE
T ss_pred CCCEEEEEEEE--E-CHHHHHHHHHHCCCCEEEE
T ss_conf 99708999988--5-5899999998787988999
No 48
>2ehj_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Escherichia coli}
Probab=95.97 E-value=0.051 Score=32.63 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=58.4
Q ss_pred EEEECCCHHHHHHHHHHHCC---CCEEEEECCCCCCH----HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99822312578899985158---71787631564201----100133103733414408788732236999999998659
Q gi|254781011|r 81 IAGGETAGIPFATLLAERLN---LPMIYVRKKSKKHG----QKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 (228)
Q Consensus 81 I~G~a~~Gip~a~~iA~~l~---~p~~~vRK~~K~hG----~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g 153 (228)
++.+--+|.++...+...+. ..++-+.+....+- ..++ -....+..|+++|.+++||+|+..+++.|++.|
T Consensus 73 ~V~ILRAGl~m~~g~~~~~P~a~~g~i~~~r~~~t~~~~~y~~kl--P~~~~~~~villDPmlATG~s~~~ai~~L~~~G 150 (208)
T 2ehj_A 73 VVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKL--VSNIDERMALIVDPMLATGGSVIATIDLLKKAG 150 (208)
T ss_dssp EEEBTTGGGGGHHHHHHHCTTCEECEEEEEECTTTCCEEEEEEEC--CSCGGGCEEEEEEEEESSCHHHHHHHHHHHHTT
T ss_pred EEEEECCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEC--CCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCC
T ss_conf 998404322589999873653504266422267778857889861--445666769996836745677999999998579
Q ss_pred CEEEEEEEEEECCCCHHHHHHHHHC--CCEEEE
Q ss_conf 8785688887417632489999977--980999
Q gi|254781011|r 154 GIIQDGIGLFFYDIFPEVPARFREN--NIKLHY 184 (228)
Q Consensus 154 ~~V~~~~vii~~~~~~~~~~~l~~~--gi~~~s 184 (228)
..=.-+++++ - -+.|-+++.+. .++++.
T Consensus 151 ~~~I~iv~~i--a-s~~Gi~~l~~~~P~v~I~t 180 (208)
T 2ehj_A 151 CSSIKVLVLV--A-APEGIAALEKAHPDVELYT 180 (208)
T ss_dssp CCEEEEEEEE--E-CHHHHHHHHHHCTTSEEEE
T ss_pred CCCEEEEEEE--E-CHHHHHHHHHHCCCCEEEE
T ss_conf 9828999998--5-5899999998794978999
No 49
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics; 2.10A {Thermus thermophilus HB8} SCOP: c.61.1.1
Probab=95.65 E-value=0.036 Score=33.63 Aligned_cols=100 Identities=10% Similarity=0.167 Sum_probs=62.6
Q ss_pred EEEEECCCHHHHHHHHHHHCC---CCEEEEECCCCCCHHHHHHH-----HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899822312578899985158---71787631564201100133-----1037334144087887322369999999986
Q gi|254781011|r 80 IIAGGETAGIPFATLLAERLN---LPMIYVRKKSKKHGQKSQIE-----GHLFKGARVLVIEDLVTLGNSMFEFVKVIRD 151 (228)
Q Consensus 80 ~I~G~a~~Gip~a~~iA~~l~---~p~~~vRK~~K~hG~~~~iE-----G~~~~g~~vliVDDviTtG~S~~~~i~~l~~ 151 (228)
+++.+--+|.++...+-..+. ..++-+++..+.+ .-++ .....+..|+++|..++||+|+..+++.|++
T Consensus 72 ~~v~ILRAGl~m~~g~~~~~p~a~~g~i~~~r~~~t~---~p~~~~~klP~~i~~~~vil~DPmlATG~s~~~ai~~Lk~ 148 (208)
T 1v9s_A 72 ALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESL---NPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKE 148 (208)
T ss_dssp EEEEETTTHHHHHHHHHTTCTTCEEEEEEEC------------CEEEECCSCGGGSCEEEECSEESSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHCCCCCCCEEEEEECCCCC---CCEEEEEECCCCCCCCEEEEECHHHHCCHHHHHHHHHHHH
T ss_conf 8999853654266779986887543402576136778---8689999737651357799968366343779999999986
Q ss_pred CCCEEEEEEEEEECCCCHHHHHHHHHC--CCEEEEE
Q ss_conf 598785688887417632489999977--9809996
Q gi|254781011|r 152 SGGIIQDGIGLFFYDIFPEVPARFREN--NIKLHYL 185 (228)
Q Consensus 152 ~g~~V~~~~vii~~~~~~~~~~~l~~~--gi~~~sl 185 (228)
.|+.=.-+++++ - -+.|-+++.+. +++++..
T Consensus 149 ~g~~~I~~v~~i--a-s~~Gi~~v~~~~P~v~I~ta 181 (208)
T 1v9s_A 149 RGATGVKLMAIL--A-APEGLERIAKDHPDTEVVVA 181 (208)
T ss_dssp TTCCSCEEEEEE--E-CHHHHHHHHHHCTTCEEEEE
T ss_pred CCCCCEEEEEEE--C-CHHHHHHHHHHCCCCEEEEE
T ss_conf 599846999995--2-78999999987969789999
No 50
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=95.59 E-value=0.028 Score=34.31 Aligned_cols=99 Identities=10% Similarity=0.125 Sum_probs=59.3
Q ss_pred EEECCCHHHHHHHHHHHC-CC--CEEEEECCCCCCHHH---HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 982231257889998515-87--178763156420110---013310373341440878873223699999999865987
Q gi|254781011|r 82 AGGETAGIPFATLLAERL-NL--PMIYVRKKSKKHGQK---SQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 (228)
Q Consensus 82 ~G~a~~Gip~a~~iA~~l-~~--p~~~vRK~~K~hG~~---~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~ 155 (228)
+.+--+|.++...+-..+ +. .++-+++..+..--. ..+ ....+++.|++.|.+++||+|+..+++.|++.|++
T Consensus 75 V~IlRAG~~m~~g~~~~~p~a~ig~i~~~R~~~t~~p~~yy~kL-P~~i~~~~villDPmlATG~s~~~ai~~L~~~G~~ 153 (209)
T 1i5e_A 75 IPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKL-PSDVEERDFIIVDPMLATGGSAVAAIDALKKRGAK 153 (209)
T ss_dssp EEBTTGGGGGHHHHHHHCTTSEECEEEEECCTTCSSCEEEEEEC-CTTTTTSEEEEECSEESSSHHHHHHHHHHHHTTCC
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEC-CCCCCCCEEEEECHHHHCCHHHHHHHHHHHHCCCC
T ss_conf 84054533478899985867600534653046888738762435-86510386897586886477799999999966998
Q ss_pred EEEEEEEEECCCCHHHHHHHHHC--CCEEEE
Q ss_conf 85688887417632489999977--980999
Q gi|254781011|r 156 IQDGIGLFFYDIFPEVPARFREN--NIKLHY 184 (228)
Q Consensus 156 V~~~~vii~~~~~~~~~~~l~~~--gi~~~s 184 (228)
-.-+++++ - -+.|-+++.+. +++++.
T Consensus 154 ~I~~vs~i--a-s~~Gl~~l~~~~P~v~I~t 181 (209)
T 1i5e_A 154 SIKFMCLI--A-APEGVKAVETAHPDVDIYI 181 (209)
T ss_dssp CEEEECSE--E-CHHHHHHHHHHCTTCEEEE
T ss_pred CEEEEEEE--C-CHHHHHHHHHHCCCCEEEE
T ss_conf 57999985--0-7999999998794978999
No 51
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=95.40 E-value=0.075 Score=31.53 Aligned_cols=99 Identities=14% Similarity=0.202 Sum_probs=57.5
Q ss_pred EEEEC--CCHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHH-HH--HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99822--31257889998515---8717876315642011001-33--10373341440878873223699999999865
Q gi|254781011|r 81 IAGGE--TAGIPFATLLAERL---NLPMIYVRKKSKKHGQKSQ-IE--GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDS 152 (228)
Q Consensus 81 I~G~a--~~Gip~a~~iA~~l---~~p~~~vRK~~K~hG~~~~-iE--G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~ 152 (228)
+++++ -+|.|+...+-..+ .+.++-+++..+.. .-.. .+ -...++..|+++|..++||+|+..+++.|++.
T Consensus 104 v~~V~ILRAGl~m~~g~~~~~P~a~vg~i~i~Rde~t~-ep~~yy~klP~~i~~~~Vll~DPMLATG~S~~~ai~~L~~~ 182 (243)
T 1bd3_D 104 ICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTA-EPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRL 182 (243)
T ss_dssp EEEEEEETTTHHHHHHHHHHSTTCCEEEEEEEECSSSC-CEEEEEEECCTTGGGSEEEEECSEESSCHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHCCCHHHCEEEECCCCCCC-CCEEEHHHCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHHC
T ss_conf 27887540663078889986875122157630267778-81431422842110145898680550572299999999971
Q ss_pred CCE---EEEEEEEEECCCCHHHHHHHHHC--CCEEEE
Q ss_conf 987---85688887417632489999977--980999
Q gi|254781011|r 153 GGI---IQDGIGLFFYDIFPEVPARFREN--NIKLHY 184 (228)
Q Consensus 153 g~~---V~~~~vii~~~~~~~~~~~l~~~--gi~~~s 184 (228)
|+. +. +++++. -+.|-+++.+. +++++.
T Consensus 183 Gv~~~~I~-~vsvia---s~~Gi~~l~~~~P~v~I~t 215 (243)
T 1bd3_D 183 GVKEERII-FVNILA---APQGIERVFKEYPKVRMVT 215 (243)
T ss_dssp TCCGGGEE-EEEEEE---CHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCEEE-EEEEEE---CHHHHHHHHHHCCCCEEEE
T ss_conf 99854079-999986---5899999998797988999
No 52
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei}
Probab=95.12 E-value=0.036 Score=33.62 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=57.0
Q ss_pred EEEECCCHHHHHHHHHHHC-CCC--EEEEECCCCCCHHHHHH-HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 9982231257889998515-871--78763156420110013-3103733414408788732236999999998659878
Q gi|254781011|r 81 IAGGETAGIPFATLLAERL-NLP--MIYVRKKSKKHGQKSQI-EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 (228)
Q Consensus 81 I~G~a~~Gip~a~~iA~~l-~~p--~~~vRK~~K~hG~~~~i-EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V 156 (228)
++.+--+|.++...+-..+ +.+ ++.+.+..... ..... ...-.++..|+++|.+++||+|+..+++.|++.|+..
T Consensus 81 ~V~IlRAGl~m~~~~~~~~p~a~~g~i~i~r~~~t~-~~~y~~~~p~~~~~~villDPmlATG~s~~~ai~~L~~~Gv~~ 159 (217)
T 3dmp_A 81 IVPVLRAGVGMSDGLLELIPSARVGHIGVYRADDHR-PVEYLVRLPDLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPG 159 (217)
T ss_dssp EEEEETTTHHHHHHHHHHCTTSEECEEECSCCCSSS-CCCSEEECCCCTTCEEEEECSEESSSHHHHHHHHHHHTTTCCG
T ss_pred EEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCC-CHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 988613542478889986777520057401257886-3007650877344609999440257757999999999849984
Q ss_pred --EEEEEEEECCCCHHHHHHHHHC--CCEEEE
Q ss_conf --5688887417632489999977--980999
Q gi|254781011|r 157 --QDGIGLFFYDIFPEVPARFREN--NIKLHY 184 (228)
Q Consensus 157 --~~~~vii~~~~~~~~~~~l~~~--gi~~~s 184 (228)
.-+++++ - -+.|-+++.+. +++++.
T Consensus 160 ~~I~~v~~i--a-a~~Gi~~i~~~~P~v~I~t 188 (217)
T 3dmp_A 160 ERLMFLALV--A-APEGVQVFQDAHPDVKLYV 188 (217)
T ss_dssp GGEEEECSE--E-CHHHHHHHHHHCTTCEEEE
T ss_pred CEEEEEEEE--E-CHHHHHHHHHHCCCCEEEE
T ss_conf 528999987--5-4799999998793978999
No 53
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=94.08 E-value=0.037 Score=33.57 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=57.4
Q ss_pred EEEECCCHHHHHHHHHHHCC-CC--EE-EEECCCCCCHHHHH---------HHHCCCCCCCEEEHHHHHHHHHHHHHHHH
Q ss_conf 99822312578899985158-71--78-76315642011001---------33103733414408788732236999999
Q gi|254781011|r 81 IAGGETAGIPFATLLAERLN-LP--MI-YVRKKSKKHGQKSQ---------IEGHLFKGARVLVIEDLVTLGNSMFEFVK 147 (228)
Q Consensus 81 I~G~a~~Gip~a~~iA~~l~-~p--~~-~vRK~~K~hG~~~~---------iEG~~~~g~~vliVDDviTtG~S~~~~i~ 147 (228)
++.+--+|.++...+...+. .+ ++ ..|-+..+....+. +-....+.++|++.|.+++||+|+..+++
T Consensus 75 ~V~ILRAGl~m~~~~~~~~p~a~~g~ig~~r~e~~~~~~~~t~~~~~yy~klP~~~~~~~~villDPmlATG~s~~~ai~ 154 (216)
T 1xtt_A 75 IINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIPDIRAKVDNVIIADPMIATASTMLKVLE 154 (216)
T ss_dssp EEEEETTTHHHHHHHHHHCTTCEEEEEEEEECCCCCSSCCSCCCEEEEEEECCCCCTTTCEEEEECSEESSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECHHHHCHHHHHHHHH
T ss_conf 97310010237888997189974556666860356767866656065400086742345338972747754188999999
Q ss_pred HHHHCCCEEEEEEEEEECCCCHHHHHHHHH-C-CCEEEE
Q ss_conf 998659878568888741763248999997-7-980999
Q gi|254781011|r 148 VIRDSGGIIQDGIGLFFYDIFPEVPARFRE-N-NIKLHY 184 (228)
Q Consensus 148 ~l~~~g~~V~~~~vii~~~~~~~~~~~l~~-~-gi~~~s 184 (228)
.|++.|++-.-+++++. -+.|-+++.+ + +++++.
T Consensus 155 ~L~~~g~~~I~~v~~ia---s~~Gi~~l~~~~P~v~I~t 190 (216)
T 1xtt_A 155 EVVKANPKRIYIVSIIS---SEYGVNKILSKYPFIYLFT 190 (216)
T ss_dssp HHGGGCCSEEEEECSEE---EHHHHHHHHHHCTTSEEEE
T ss_pred HHHHCCCCEEEEEEEEE---CHHHHHHHHHHCCCCEEEE
T ss_conf 98745995389999994---6999999998795978999
No 54
>2e55_A Uracil phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.15A {Aquifex aeolicus}
Probab=92.85 E-value=0.13 Score=30.09 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=56.2
Q ss_pred EECCCHHHHHHHHHHHC-CCC--EE-EEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 82231257889998515-871--78-763156420110013310373341440878873223699999999865987856
Q gi|254781011|r 83 GGETAGIPFATLLAERL-NLP--MI-YVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 83 G~a~~Gip~a~~iA~~l-~~p--~~-~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
.+=-+|.++...+...+ +.+ ++ +-|.+......--...=.-..+.+|+++|-++.||+|+..+++.|++.|.+=.-
T Consensus 74 ~ILRaGl~m~~~~~~~~P~a~ig~i~i~rd~~t~~p~~yy~klP~~~~~~vlllDPmlATG~s~~~ai~~L~~~g~~~I~ 153 (208)
T 2e55_A 74 PILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLPELKGKIVVILDPMLATGGTLEVALREILKHSPLKVK 153 (208)
T ss_dssp EEETTTHHHHHHHHHHSTTCEECEEEEEECTTTCCEEEEEEECCCCBTSEEEEECSEESSSHHHHHHHHHHHTTCBSEEE
T ss_pred EEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEHHHHHHHHCCCCEEEECHHHCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 98245531777799748887346876225776787123355455303570698346761571599999999844886179
Q ss_pred EEEEEECCCCHHHHHHHHHC--CCEEEE
Q ss_conf 88887417632489999977--980999
Q gi|254781011|r 159 GIGLFFYDIFPEVPARFREN--NIKLHY 184 (228)
Q Consensus 159 ~~vii~~~~~~~~~~~l~~~--gi~~~s 184 (228)
+++++ - -+.|-+++.+. +++++.
T Consensus 154 ~v~~i--a-a~~Gl~~l~~~~P~v~I~t 178 (208)
T 2e55_A 154 SVHAI--A-APEGLKRIEEKFKEVEIFV 178 (208)
T ss_dssp EEEEE--E-CHHHHHHHHHHCTTSEEEE
T ss_pred EEEEE--E-CHHHHHHHHHHCCCCEEEE
T ss_conf 99998--2-5999999998788968999
No 55
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=70.29 E-value=2.4 Score=21.73 Aligned_cols=38 Identities=18% Similarity=0.527 Sum_probs=34.6
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|+++|-|+++-++|-+..+++++|++.+-.|.
T Consensus 62 ~g~L~~GD~Il~VNg~~v~~~~~~e~v~~lr~~~~~v~ 99 (129)
T 2dmz_A 62 NGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVH 99 (129)
T ss_dssp HTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSSEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 39999899999999999889989999999973899599
No 56
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=67.70 E-value=2.9 Score=21.17 Aligned_cols=38 Identities=13% Similarity=0.343 Sum_probs=34.7
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-..+.|..+++++|++++..|.
T Consensus 56 ~G~l~~GD~Il~INg~~v~~~s~~ev~~~i~~~~~~v~ 93 (107)
T 1wf8_A 56 DGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVR 93 (107)
T ss_dssp HCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 19999999999999999889989999999876998599
No 57
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synaptic density, glutametergic receptors, carbohydrate metabolism, cell cycle; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=67.55 E-value=3.1 Score=20.99 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=40.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 78763156420110013310373341440878873223699999999865987856
Q gi|254781011|r 103 MIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 103 ~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
-+||.+=.+ |.-....|.+..|+++|=|.++-..|-|..+++++|+.++..|.-
T Consensus 112 gi~I~~V~~--gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~~lr~~~~~v~L 165 (170)
T 3egg_C 112 GIFVKTVTE--GGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRF 165 (170)
T ss_dssp EEEEEEECT--TSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEE
T ss_pred CEEEEEECC--CCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 889999799--996998499988999999999988899899999999879986999
No 58
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesion; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A
Probab=66.20 E-value=3 Score=21.14 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=35.1
Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 331037334144087887322369999999986598785
Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
-+|.+..|++++-|++.-+.+-|..+++++|++++..|.
T Consensus 52 a~~~l~~GD~Il~INg~~v~~~s~~e~~~llr~~~~~v~ 90 (107)
T 2h2b_A 52 AEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAK 90 (107)
T ss_dssp TBTTBCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred HHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 783899899999999999999989999999982899799
No 59
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=66.06 E-value=3.5 Score=20.68 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=35.6
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 3103733414408788732236999999998659878568
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228)
.|.+..|++++=|++.-+.|-|..+++++|++++..|.-.
T Consensus 51 ~G~L~~GD~Il~VNG~~v~~~~~~e~v~llk~~~~~v~l~ 90 (103)
T 2dc2_A 51 CGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 90 (103)
T ss_dssp HTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 3999889999999999978998999999997189909999
No 60
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=65.17 E-value=7.4 Score=18.56 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=10.7
Q ss_pred CCCCCHHHHH--HHHHHHHHHCCC
Q ss_conf 8898978999--999999986597
Q gi|254781011|r 4 NYFPQQNIIA--ELVAKMLFEIKA 25 (228)
Q Consensus 4 ~~~~~~~~~~--~~~a~~L~~~~a 25 (228)
..|||...+. =.++++ .+.|.
T Consensus 10 ~aHPDDe~lg~GGtlak~-~~~G~ 32 (242)
T 2ixd_A 10 GAHADDVEIGMAGTIAKY-TKQGY 32 (242)
T ss_dssp ESSTTHHHHHHHHHHHHH-HHTTC
T ss_pred EECCCHHHHHHHHHHHHH-HHCCC
T ss_conf 878886788789999999-97799
No 61
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A
Probab=65.07 E-value=3.3 Score=20.87 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=34.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+.+|++++=|++.-.+|-|..+++++|++.+-.|.
T Consensus 49 ~G~L~~GD~Il~VNg~~v~~~t~~eav~~lr~~~~~v~ 86 (105)
T 2awx_A 49 DGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVY 86 (105)
T ss_dssp HCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 49998899999999999789979999999981899699
No 62
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, peptide, bound ligand, domain, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.75A {Homo sapiens}
Probab=64.32 E-value=4.1 Score=20.20 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=34.6
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++-|++.-+.|-|..+++++|++.+..|.
T Consensus 69 ~G~L~~GD~Il~VNg~~v~~~s~~eav~ll~~~~~~v~ 106 (118)
T 3b76_A 69 DGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIV 106 (118)
T ss_dssp HCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 19988899999999999889989999999972999099
No 63
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=64.08 E-value=4.1 Score=20.22 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=34.7
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|+++-+.+.|..++++++++++..|.
T Consensus 45 ~g~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~ 82 (92)
T 2qg1_A 45 DGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVT 82 (92)
T ss_dssp HTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 49999999999999999789999999999977999699
No 64
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=64.05 E-value=3.8 Score=20.44 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=34.7
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|+++-..+.+..+++++|++++-.|.
T Consensus 59 ~G~L~~GD~Il~INg~~v~~~~~~~v~~llr~~~~~v~ 96 (114)
T 1uew_A 59 CAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVT 96 (114)
T ss_dssp GSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 59999999999999999889979999999977998499
No 65
>1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1 PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A
Probab=63.92 E-value=7.8 Score=18.41 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=48.3
Q ss_pred CCCEEEECCCCCCEEEE-----------CCCCCCCHH--HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 89867311872640142-----------621357989--99999999999866421756667899822312578899985
Q gi|254781011|r 31 ENPYHLTSGIVSPLYID-----------CRKLISFVR--ARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAE 97 (228)
Q Consensus 31 ~g~F~L~SG~~Sp~Y~d-----------~r~~~s~P~--~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~ 97 (228)
+| +.+.+|..||||+. +..++++-. ....+..++-....++ .+=.|+.-...+-.+++.+..
T Consensus 18 EG-~~~drGY~SpyFitd~~~~~~elenp~ILitd~kI~~~~~ilp~Le~~~~~~----rPLlIIA~di~~eaL~~Lv~N 92 (203)
T 1kid_A 18 EG-MQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAG----KPLLIIAEDVEGEALATLVVN 92 (203)
T ss_dssp CC-EEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHT----CCEEEEESEECHHHHHHHHHH
T ss_pred CC-EEECCCCCCCCCEECCCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHCC----CCEEEEECCCCHHHHHHHHHH
T ss_conf 77-5756774686012078888799507679997785477878899999998549----968999541068899999986
Q ss_pred HC--CCCEEEEECCCCCCHHHH
Q ss_conf 15--871787631564201100
Q gi|254781011|r 98 RL--NLPMIYVRKKSKKHGQKS 117 (228)
Q Consensus 98 ~l--~~p~~~vRK~~K~hG~~~ 117 (228)
++ +++.+-|+.. +||..+
T Consensus 93 ~~kg~l~v~aVkaP--gfG~~r 112 (203)
T 1kid_A 93 TMRGIVKVAAVKAP--GFGDRR 112 (203)
T ss_dssp HHTTSCCEEEEECC--SCHHHH
T ss_pred HCCCCCCEEEECCC--CCCHHH
T ss_conf 40587532464388--877678
No 66
>1t2m_A AF-6 protein; chromosomal translocation, proto-oncogene, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2ain_A 1xz9_A 2exg_A*
Probab=63.71 E-value=3.5 Score=20.69 Aligned_cols=38 Identities=16% Similarity=0.349 Sum_probs=34.5
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+.+|++++=|++.-+.+-|..+++++|++.+..|.
T Consensus 48 ~G~L~~GD~Il~INg~~v~~~s~~e~~~llk~~~~~v~ 85 (101)
T 1t2m_A 48 DGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVT 85 (101)
T ss_dssp HTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 59999999999999999889989999999984999699
No 67
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=63.60 E-value=6.2 Score=19.06 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=41.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 8717876315642011001331037334144087887322369999999986598785
Q gi|254781011|r 100 NLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 100 ~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
..+.+|+.+= ...|--..-.|.+..|+++|=|++.-..|-|..+++++|++.+-.|.
T Consensus 42 ~~~~v~V~~v-~~~g~A~~~~g~L~~GD~Il~VNg~~v~~~t~~~~~~ll~~~~~~v~ 98 (118)
T 2yub_A 42 YATTVQVKEV-NRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQ 98 (118)
T ss_dssp SCCEEEEEEC-CTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEE
T ss_pred CCCCEEEEEE-CCCCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 8889899998-89980978869999999999989998899989999999974899699
No 68
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; transferase, structural genomics, structural genomics consortium, SGC; HET: HIS; 2.05A {Homo sapiens}
Probab=61.48 E-value=4.4 Score=20.00 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=34.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-..|.|..+++++|++++-.|.
T Consensus 65 ~G~L~~GD~Il~VNg~~v~~~t~~evv~llk~~~~~v~ 102 (112)
T 2r4h_A 65 SGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVR 102 (112)
T ss_dssp TTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 29999999999899999999979999999876998399
No 69
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.26 E-value=4.4 Score=20.00 Aligned_cols=38 Identities=32% Similarity=0.296 Sum_probs=34.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-.++-+..+++++|++.+-.|.
T Consensus 54 ~G~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~ 91 (104)
T 2djt_A 54 CGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLH 91 (104)
T ss_dssp HCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 19999999999999999889989999999975899799
No 70
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.17 E-value=3.8 Score=20.46 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=34.5
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++-|+++-..+-+..+++++|++++..|.
T Consensus 63 ~g~l~~GD~Il~VNg~~v~~~~~~e~~~~ik~~~~~v~ 100 (120)
T 2eno_A 63 DGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVS 100 (120)
T ss_dssp SCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 39999999999999999889979999999973898599
No 71
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=60.88 E-value=4.6 Score=19.88 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=34.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|+++-..|-|..+++++|++.+..|.
T Consensus 49 ~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~~~~~v~ 86 (94)
T 2fe5_A 49 DGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVY 86 (94)
T ss_dssp HCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 19999999999999999889989999999973999699
No 72
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=60.47 E-value=8.9 Score=18.02 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=40.6
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCC
Q ss_conf 310373341440878873223699999999865987856888874176324899999779
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENN 179 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~g 179 (228)
.|.+..|++++=|+++-.++.+..+++++|+..+-.+. + ++.+ ......++...|
T Consensus 55 ~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~v~--l-~v~~--~~~~~~~~~~sg 109 (113)
T 1um7_A 55 SGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVT--I-VAQY--RPEEYSRFESSG 109 (113)
T ss_dssp TTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEE--E-EEEC--CHHHHHHHHHCC
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE--E-EEEE--CCCCCCCCCCCC
T ss_conf 29799999999999999889989999999980899599--9-9998--983456467899
No 73
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structural genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=60.11 E-value=4.4 Score=19.99 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=34.8
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 310373341440878873223699999999865987856
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
-|.+.+|+.++-|++.-..|-|..+++++|+..+..|.-
T Consensus 66 ~g~L~~GD~Il~VNg~~v~~~s~~ev~~llk~~~~~v~L 104 (114)
T 2gzv_A 66 DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 104 (114)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf 699999999999999997899799999999759980999
No 74
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=59.99 E-value=4.4 Score=20.04 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=34.5
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|+++-..|-+..+++++|++++..|.
T Consensus 57 ~G~L~~GD~Il~VNg~~v~~~~~~eav~~l~~~~~~v~ 94 (107)
T 1uhp_A 57 EGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIV 94 (107)
T ss_dssp TTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCEE
T ss_conf 49999999999999999889989999999980999299
No 75
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=59.92 E-value=5.6 Score=19.32 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=39.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 17876315642011001331037334144087887322369999999986598785
Q gi|254781011|r 102 PMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 102 p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+|+.+=.. .| .-++.+..|++++=|++.-.+|-|..+++++|++.+-.|.
T Consensus 35 ~~i~I~~v~~-gg---~A~~~L~~GD~Il~VNg~~v~~~t~~~av~~l~~~~~~v~ 86 (95)
T 1mfg_A 35 DGIFVTRVQP-EG---PASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVE 86 (95)
T ss_dssp CCEEEEEECT-TS---TTTTTCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEE
T ss_pred CCEEEEEECC-CC---HHHHCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 8899999789-99---4796488999999999999889989999999981999799
No 76
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=59.88 E-value=4.5 Score=19.98 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=34.9
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 310373341440878873223699999999865987856
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
.|.+..|++++-|+++-..|-|..+++++|++++..|.-
T Consensus 53 ~G~L~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~~~v~L 91 (101)
T 2jik_A 53 DGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSL 91 (101)
T ss_dssp HCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 399999999999999998899899999999839997999
No 77
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=59.68 E-value=5.6 Score=19.34 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=34.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++-|++.-..|-|..+++++|++.+..|.
T Consensus 69 ~G~L~~GD~Il~VNG~~v~~~t~~evv~llk~~~~~v~ 106 (120)
T 2iwo_A 69 TQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIE 106 (120)
T ss_dssp HTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 38999999999999999889989999999972899599
No 78
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=59.67 E-value=5.1 Score=19.60 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=34.1
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-+.|.+..+++++|++++..+.
T Consensus 46 ~G~l~~GD~Il~VNg~~v~~~~~~ev~~llk~~~~~v~ 83 (97)
T 1n7e_A 46 TGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT 83 (97)
T ss_dssp HTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 49999899999999999789989999999975998599
No 79
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=59.63 E-value=4.2 Score=20.15 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=34.5
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|+++-..+-+..+++++|++++-.|.
T Consensus 52 ~g~L~~GD~Il~INg~~v~~~~~~ev~~~lk~~~~~v~ 89 (110)
T 1um1_A 52 DGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMR 89 (110)
T ss_dssp HSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 19999999999999999789989999999982999699
No 80
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=59.61 E-value=4.4 Score=20.01 Aligned_cols=38 Identities=21% Similarity=0.500 Sum_probs=34.9
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-.+|.|..+++++|++++..|.
T Consensus 60 ~G~L~~GD~Il~VNg~~v~~~~~~~a~~~lk~~~~~v~ 97 (108)
T 2jre_A 60 DGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVR 97 (108)
T ss_dssp HSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 29999999999999999889989999999975998489
No 81
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=59.56 E-value=5 Score=19.66 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=34.8
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|.+.-.+|-|..+++++|++++..|.
T Consensus 49 ~G~L~~GD~I~~INg~~v~~~t~~~~~~~lr~~~~~v~ 86 (97)
T 2iwn_A 49 DGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 86 (97)
T ss_dssp HCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 39999999999999999789989999999876998699
No 82
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=59.46 E-value=3.3 Score=20.83 Aligned_cols=46 Identities=24% Similarity=0.428 Sum_probs=37.6
Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf 3310373341440878873223699999999865987856888874176
Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDI 167 (228)
Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~ 167 (228)
..|.+..|++++-|+++-..|-|..+++++|++.+..|.- ++.|+.
T Consensus 57 ~~G~l~~GD~Il~INg~~v~~~~~~~~v~~lk~~~~~v~L---~v~R~~ 102 (108)
T 1q7x_A 57 SDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHL---LLEKGQ 102 (108)
T ss_dssp HHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEE---EEECCC
T ss_pred HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE---EEEECC
T ss_conf 7399989999999999998899899999998769986999---999898
No 83
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=59.00 E-value=5 Score=19.67 Aligned_cols=38 Identities=26% Similarity=0.584 Sum_probs=33.8
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++-|+++-+.|.|..+++++|++.+-.|.
T Consensus 49 ~g~l~~GD~Il~INg~~v~~~~~~e~v~~l~~~~~~v~ 86 (96)
T 1d5g_A 49 DGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 86 (96)
T ss_dssp TTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 39999999999999999889989999999877998699
No 84
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.93 E-value=4.8 Score=19.77 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=34.7
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+|.+.+|++++-|++.-..+-+..+++++|+.++..|.
T Consensus 45 ~~~L~~GD~Il~INg~~v~~~s~~e~~~llk~~~~~v~ 82 (96)
T 2edv_A 45 HGKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLS 82 (96)
T ss_dssp TTTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 02789999999999999889989999999975998599
No 85
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=58.87 E-value=4.5 Score=19.98 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=34.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-..|.|..+++++|++++..|.
T Consensus 69 ~G~L~~GD~Il~VNg~~v~~~t~~evv~ll~~~~~~v~ 106 (117)
T 2fne_A 69 DGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVT 106 (117)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEE
T ss_conf 19988899999999999889989999999974999089
No 86
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=58.44 E-value=5.6 Score=19.31 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=35.2
Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 3310373341440878873223699999999865987856
Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
.+|.+..|++++-|++.-..|-+..+++++|++++-.|.-
T Consensus 59 A~~~L~~GD~Il~INg~~v~~~~~~evv~~lr~~~~~v~l 98 (117)
T 2csj_A 59 ADGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAI 98 (117)
T ss_dssp HHHHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEE
T ss_pred HHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 0038999999999999999899899999999808996999
No 87
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=58.41 E-value=5 Score=19.66 Aligned_cols=45 Identities=31% Similarity=0.429 Sum_probs=37.0
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf 310373341440878873223699999999865987856888874176
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDI 167 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~ 167 (228)
.|.+..|++++=|++.-+.|.|..++++.+++++..|.- .+.|+.
T Consensus 37 ~G~L~~GD~Il~INg~~v~~~s~~ea~~~i~~~~~~v~L---~V~R~i 81 (88)
T 3e17_A 37 DGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL---VVLRDL 81 (88)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEE---EECCC-
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE---EEEECC
T ss_conf 399998999999999998899899999999879997999---999898
No 88
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genomics consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=58.37 E-value=5.3 Score=19.49 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=34.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-..|-|..+++++|++.+-.|.
T Consensus 70 ~G~L~~GD~Il~VNg~~v~~~s~~e~v~llr~~~~~v~ 107 (117)
T 2byg_A 70 DGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVY 107 (117)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 19998899999999999889989999999972899699
No 89
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=58.05 E-value=6.5 Score=18.93 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=35.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 310373341440878873223699999999865987856
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
.|.+.+|++++=|++.-..|-|..++++.|++.+..|.-
T Consensus 53 ~g~L~~GD~Il~INg~~v~~~s~~~~~~li~~~~~~v~L 91 (98)
T 1ihj_A 53 CGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIEL 91 (98)
T ss_dssp HCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 099999999999999998899899999999879996999
No 90
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=57.84 E-value=5.4 Score=19.46 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=34.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|+++-..|-|..+++++|++++-.|.
T Consensus 59 ~G~L~~GD~Il~INg~~v~~~t~~ea~~~ik~~~~~v~ 96 (116)
T 2dm8_A 59 DGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVR 96 (116)
T ss_dssp HTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 29999999999999999889989999999974998599
No 91
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.79 E-value=5.6 Score=19.31 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=34.6
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+.+|++++=|+++-..+-+..+++++|++.+..|.
T Consensus 46 ~g~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~ 83 (93)
T 2dkr_A 46 HGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVK 83 (93)
T ss_dssp HCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 49999899999999999899989999999982999299
No 92
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein/oxidoreductase complex; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=57.41 E-value=5 Score=19.67 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=34.5
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+.+|++++=|++.-+++-|..+++++|++++..|.
T Consensus 46 ~G~L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~ 83 (90)
T 1qav_A 46 TEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 83 (90)
T ss_dssp TTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 29999899999999999999989999999980899599
No 93
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=57.37 E-value=6 Score=19.12 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=35.1
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 1037334144087887322369999999986598785688887
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228)
+.+..|++++-|++.-.+|-|..+++++|+.+|..|. ++++
T Consensus 49 agL~~GD~Il~VNg~~v~~~~~~e~v~~l~~~~~~v~--L~V~ 89 (128)
T 2kjd_A 49 SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETK--LLVV 89 (128)
T ss_dssp HTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEE--EEEE
T ss_pred CCCCCCCEEEEECCEEECCCCHHHHHHHHHCCCCEEE--EEEE
T ss_conf 6999899999979999678999999999976989799--9998
No 94
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=57.34 E-value=3.8 Score=20.44 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=34.8
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 310373341440878873223699999999865987856
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
.|.+..|++++=|+++-..+-|..+++++|++.+..|.-
T Consensus 66 ~g~l~~GD~Il~VNg~~v~~~t~~evv~~ir~~~~~v~l 104 (117)
T 2ehr_A 66 TNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVF 104 (117)
T ss_dssp SCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 199988999999999997799899999999869984999
No 95
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=57.31 E-value=5.5 Score=19.39 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=34.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
++.+..|++++=|++.-..|-|..++++.|++.+..|.
T Consensus 57 ~~~L~~GD~Il~VNg~~v~~~~~~eav~~l~~~~~~v~ 94 (103)
T 1n7t_A 57 SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVE 94 (103)
T ss_dssp SSSCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEE
T ss_pred HHCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 71668999999999999889979999999972899799
No 96
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=57.15 E-value=5.6 Score=19.36 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=35.7
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 310373341440878873223699999999865987856
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
.|.+..|++++-|++.-..|-|..+++++|++++..|.-
T Consensus 61 ~G~L~~GD~Il~VNg~~v~~~~~~e~~~llk~~~~~v~l 99 (125)
T 3hpk_A 61 DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 99 (125)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 699998999999999998999899999999809990999
No 97
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=56.70 E-value=5.5 Score=19.38 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=35.9
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 31037334144087887322369999999986598785688887
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228)
-|.+..|++++=|+++-..|-+..+++++|++++..|. ++|+
T Consensus 64 ~g~l~~GD~Il~Ing~~v~~~~~~~v~~ll~~~~~~v~--l~v~ 105 (113)
T 1va8_A 64 SGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLT--FVLI 105 (113)
T ss_dssp HTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEE--EEEE
T ss_pred CCCCCCCCEEEEECCCEECCCCHHHHHHHHHCCCCCEE--EEEE
T ss_conf 18997499999999917779969999999856999299--9998
No 98
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=56.65 E-value=4.3 Score=20.11 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=34.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+.+|++++=|+++-.+|-|..+++++|+..+..|.
T Consensus 51 ~g~l~~GD~Il~VNg~~v~~~~~~~vv~~l~~~~~~v~ 88 (113)
T 2g5m_B 51 DGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVR 88 (113)
T ss_dssp HTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 48989899999999999789979999999876998599
No 99
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=56.05 E-value=7 Score=18.69 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=40.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 71787631564201100133103733414408788732236999999998659878568
Q gi|254781011|r 101 LPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228)
Q Consensus 101 ~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228)
.+.+|+++=..+ | -....|.+..|++++=|+++-.+|-+..+++++|+.+....+.+
T Consensus 43 ~~~i~V~~v~~g-g-~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~llk~~~~~~V~L 99 (108)
T 2d92_A 43 RSVIVIRSLVAD-G-VAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHL 99 (108)
T ss_dssp CEEEEEEEECTT-C-HHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEE
T ss_pred CCCEEEEEECCC-C-HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 878899998999-9-58963999969999999999988998999999996289986999
No 100
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=55.92 E-value=5.7 Score=19.28 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=35.6
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf 10373341440878873223699999999865987856888874
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228)
+.+.+|++++-|++.-.++.|..+++++|+..+..+. ++++.
T Consensus 43 ~gl~~GD~Il~VnG~~v~~~~~~ev~~~l~~~~~~v~--L~V~~ 84 (91)
T 2vsp_A 43 AGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVT--LLVCG 84 (91)
T ss_dssp TTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEE--EEEEC
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE--EEEEC
T ss_conf 6999999999999999999989999999975999699--99989
No 101
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, alternative splicing; 1.5A {Homo sapiens}
Probab=55.53 E-value=5.7 Score=19.30 Aligned_cols=38 Identities=24% Similarity=0.470 Sum_probs=34.5
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++-|++.-..|-|..+++++|++.+-.|.
T Consensus 48 ~g~L~~GD~Il~INg~~v~~~~~~e~~~~l~~~~~~v~ 85 (97)
T 2jil_A 48 EGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAA 85 (97)
T ss_dssp HCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 09898999999999999789989999999982999699
No 102
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=55.34 E-value=7.3 Score=18.56 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=34.2
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-..|.+..+++++|+.++..|.
T Consensus 41 ~G~l~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~ 78 (88)
T 1kwa_A 41 QGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSIT 78 (88)
T ss_dssp HTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEE
T ss_conf 39998899999999999779989999999976999699
No 103
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=55.12 E-value=5.9 Score=19.18 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=34.1
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-.+|-|..+++++|++.+-.|.
T Consensus 54 ~g~L~~GD~Il~INg~~v~~~~~~~v~~llk~~~~~v~ 91 (111)
T 2dlu_A 54 DGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVR 91 (111)
T ss_dssp HTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 69986899999999999789989999999975998599
No 104
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=54.83 E-value=7.1 Score=18.67 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHCCCCCCCEEEHHHHH-HHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887-322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLV-TLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDvi-TtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|+++|=|++.- +.|-+-.+++++|+.++..|.
T Consensus 70 ~G~L~~GD~Il~VNg~~v~~~~t~~ea~~ll~~~~~~v~ 108 (128)
T 2db5_A 70 DQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLR 108 (128)
T ss_dssp TCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCCHHHHHHHHHHCCCEEE
T ss_conf 089999999999999998879999999999980899599
No 105
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.70A {Homo sapiens}
Probab=54.69 E-value=5.9 Score=19.19 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=34.2
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.+.+.+|++++-|++.-+.+-|..+++++|++++-.|.
T Consensus 41 ~~~L~~GD~Il~VNg~~v~~~~~~ev~~~l~~~~~~v~ 78 (87)
T 2pa1_A 41 DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLR 78 (87)
T ss_dssp HTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 88999999999999999999989999999876999899
No 106
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, alternative splicing, cell junction, membrane, phosphoprotein, polymorphism; 2.40A {Homo sapiens}
Probab=54.47 E-value=5.9 Score=19.18 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=34.2
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-.+|.|..+++++|++.+..|.
T Consensus 39 ~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~ 76 (92)
T 3cyy_A 39 DGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLK 76 (92)
T ss_dssp SCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 59998999999999999778999999999877999899
No 107
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=54.41 E-value=3.6 Score=20.55 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=34.2
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 310373341440878873223699999999865987856
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
.| +..|+.||=|+++-..|.|..+++++|+.+|-.|.-
T Consensus 49 ~G-L~~GD~Il~INg~~v~~~t~~eav~llr~~~~~v~L 86 (216)
T 2krg_A 49 SG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL 86 (216)
T ss_dssp HT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEE
T ss_pred CC-CCCCCEEEEECCEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 39-998999999799984899999999999759996899
No 108
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genomics, structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=54.17 E-value=6.8 Score=18.77 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=34.7
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++-|++.-..|-|..+++++|++++..|.
T Consensus 50 ~G~L~~GD~Il~VNg~~v~~~s~~~v~~~l~~~~~~v~ 87 (102)
T 2i1n_A 50 DGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVR 87 (102)
T ss_dssp HCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 49999998999999999889989999999973899699
No 109
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, structural genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=54.17 E-value=5 Score=19.66 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=34.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
-|.+..|++++=|++.-..+.|..+++++|++++-.|.
T Consensus 55 ~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l~~~~~~v~ 92 (103)
T 2fcf_A 55 NGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVV 92 (103)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 29999899999999999889989999999984899599
No 110
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Probab=53.53 E-value=6.9 Score=18.75 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=34.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-..|.|..+++++|+.+...|.
T Consensus 44 ~G~l~~GD~Il~INg~~v~~~t~~e~~~~lk~~~~~v~ 81 (93)
T 3o46_A 44 SGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAIT 81 (93)
T ss_dssp HTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEE
T ss_conf 09976799999999999889989999999976999199
No 111
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=53.31 E-value=6.9 Score=18.74 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=34.0
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+.+|++++=|+++-..|-+..+++++|++++-.|.
T Consensus 45 ~~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~~v~ 81 (103)
T 1wf7_A 45 AHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLN 81 (103)
T ss_dssp TTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 6999999999999998899989999999984999699
No 112
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.20 E-value=5.4 Score=19.41 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=32.4
Q ss_pred CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 37334144087887322369999999986598785
Q gi|254781011|r 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+..|++++-|++.-..+-+..++++.|+..+-.|.
T Consensus 50 L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~ 84 (106)
T 2eei_A 50 VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVM 84 (106)
T ss_dssp CCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 98899999999999999999999999976999699
No 113
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.08 E-value=6.5 Score=18.92 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=33.7
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+..|++++=|++.-+.+-|-.+++++|++++..|.
T Consensus 48 ~gL~~GD~Il~VNg~~v~~~s~~evv~ll~~~~~~v~ 84 (94)
T 2eeg_A 48 AALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLT 84 (94)
T ss_dssp TTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 7999999999899999999989999999976998499
No 114
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=53.00 E-value=6.3 Score=18.98 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=34.2
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 10373341440878873223699999999865987856
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
+.+..|+.++=|++.-++|-|..++++.|+.++-.|.-
T Consensus 49 ~gL~~GD~Il~INg~~v~~~s~~~v~~lik~~~~~v~l 86 (98)
T 2jxo_A 49 SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL 86 (98)
T ss_dssp HTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 79999999999999998899999999998779997999
No 115
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=53.00 E-value=4.7 Score=19.82 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-.++-|..+++++|++++-.|.
T Consensus 54 ~G~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~ 91 (105)
T 1wha_A 54 AGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIA 91 (105)
T ss_dssp HSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 19988899999999999789989999999975998499
No 116
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- virus interaction, structural genomics consortium, synaptosome; 1.80A {Homo sapiens}
Probab=52.92 E-value=5.8 Score=19.25 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=34.0
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+.+|++++=|++.-..|-|..+++++|++++-.|.
T Consensus 75 ~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~v~ 112 (123)
T 2iwq_A 75 NGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVV 112 (123)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 28998999999999999889999999999985999699
No 117
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=52.73 E-value=12 Score=17.20 Aligned_cols=78 Identities=19% Similarity=0.353 Sum_probs=46.2
Q ss_pred EEEECCCCCCEEEECCC-----------CCCCH--HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf 67311872640142621-----------35798--999999999999866421756667899822312578899985158
Q gi|254781011|r 34 YHLTSGIVSPLYIDCRK-----------LISFV--RARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLN 100 (228)
Q Consensus 34 F~L~SG~~Sp~Y~d~r~-----------~~s~P--~~~~~i~~~~~~~i~~~~~~~~~d~I~G~a~~Gip~a~~iA~~l~ 100 (228)
+.+.+|-.||||+.... ++++- .....+...+-....+ ..+=.|+.-...+-.+++.+..++.
T Consensus 2 m~~drGY~SpyFvtd~~~~~~~lenp~ILv~d~kI~~~~~ilp~Le~~~~~----~rPLlIIAedi~~eaL~~Lv~N~~~ 77 (145)
T 1srv_A 2 YQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQT----GKPLLIIAEDVEGEALATLVVNKLR 77 (145)
T ss_dssp EEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSEECCHHHHHHHHHHHHTT----TCCEEEEESEECHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 744667558700107556789972720010116523599999999999971----9967999576678999999999860
Q ss_pred --CCEEEEECCCCCCHHHH
Q ss_conf --71787631564201100
Q gi|254781011|r 101 --LPMIYVRKKSKKHGQKS 117 (228)
Q Consensus 101 --~p~~~vRK~~K~hG~~~ 117 (228)
++.+-+|.. +||..+
T Consensus 78 g~l~v~aVkaP--~fG~~r 94 (145)
T 1srv_A 78 GTLSVAAVKAP--GFGDRR 94 (145)
T ss_dssp TSCCEEEEECC--SSHHHH
T ss_pred CCCEEEEEECC--CCCHHH
T ss_conf 88179999399--986555
No 118
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=52.54 E-value=7.2 Score=18.62 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=34.2
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|+++-..|-+..+++++|++.+..|.
T Consensus 67 ~g~l~~GD~Il~INg~~v~~~~~~~v~~~lk~~~~~v~ 104 (124)
T 2daz_A 67 DGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVK 104 (124)
T ss_dssp HTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 49997506899999999889989999999975998699
No 119
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=52.21 E-value=7.6 Score=18.48 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=39.5
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCE
Q ss_conf 037334144087887322369999999986598785688887417632489999977980
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIK 181 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~ 181 (228)
.+..|++++-|++.-..+.+..+++++|+.++-.|. +.+. + ....+.....+++
T Consensus 55 Gl~~GD~Il~Ing~~v~~~~~~~~~~~lr~~~~~v~--l~v~-~---~~~~~~~~~~~~~ 108 (114)
T 2edz_A 55 GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVT--LLVL-D---GDSYEKAVKNQVD 108 (114)
T ss_dssp TCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEE--EEEE-C---HHHHHHHHHHTCC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE--EEEE-E---CCCCCCCEECCCC
T ss_conf 998899999999977420889999999877989899--9999-6---9976403771526
No 120
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A
Probab=51.83 E-value=12 Score=17.14 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=34.7
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 1037334144087887322369999999986598785688
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI 160 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~ 160 (228)
| +..|++++=|++.-.+|.|..++++.|++++-.|.-.+
T Consensus 62 G-L~~GD~Il~vng~~v~~~~~~~v~~~i~~~~~~v~l~V 100 (109)
T 1q3o_A 62 G-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 100 (109)
T ss_dssp T-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEE
T ss_pred C-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 9-98799999999999899989999999982999699999
No 121
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=51.78 E-value=8.6 Score=18.13 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=32.7
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 310373341440878873223699999999865987
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~ 155 (228)
.|.+.+|++++=|+..-.+|-|..+++++|++++..
T Consensus 74 ~G~L~~GD~Il~VNG~~v~~~t~~ea~~lL~~~~~~ 109 (121)
T 2kom_A 74 DGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME 109 (121)
T ss_dssp HTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSS
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCC
T ss_conf 194998999999999997899899999999718998
No 122
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=51.48 E-value=10 Score=17.70 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=33.7
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+.+|++++=|++.-..+-|..++++.|+.++-.|.
T Consensus 43 ~gL~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~v~ 79 (89)
T 2q3g_A 43 AGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLS 79 (89)
T ss_dssp TTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 5999999999999999999989999999876999899
No 123
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=51.23 E-value=10 Score=17.67 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHCCCEE
Q ss_conf 99999999998659768
Q gi|254781011|r 11 IIAELVAKMLFEIKAVN 27 (228)
Q Consensus 11 ~~~~~~a~~L~~~~ai~ 27 (228)
..++.+++.|.+.|.-.
T Consensus 26 t~~~~l~~~L~~~GV~~ 42 (570)
T 2vbf_A 26 TVGDYLLDRLHELGIEE 42 (570)
T ss_dssp BHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHCCCCE
T ss_conf 69999999999879999
No 124
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=50.61 E-value=8 Score=18.33 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=41.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 8717876315642011001331037334144087887322369999999986598785
Q gi|254781011|r 100 NLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 100 ~~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+.+||.. ....| -....|.+..|++++=|+++-..+-+..+++++|++.+..|.
T Consensus 40 ~~~~i~V~~-V~~~s-~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~ 95 (117)
T 1v62_A 40 NKSVITIDR-IKPAS-VVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVR 95 (117)
T ss_dssp SSCEEEEEE-CCTTS-HHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEE
T ss_pred CCCCEEEEE-ECCCC-HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEE
T ss_conf 979889999-88899-899849997288999999999889989999999983999489
No 125
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=50.41 E-value=8.8 Score=18.04 Aligned_cols=85 Identities=12% Similarity=0.119 Sum_probs=48.9
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHH--HHCCCEEEEE-----------------
Q ss_conf 334144087887322369999999986598785688887417632489999--9779809996-----------------
Q gi|254781011|r 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARF--RENNIKLHYL----------------- 185 (228)
Q Consensus 125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l--~~~gi~~~sl----------------- 185 (228)
...+++||||..-+-....++.+.|++.|..-..++.++ +..+...+++ ...|++-..+
T Consensus 118 ~~~~l~VVd~~~~~~~KTK~~~~~l~~l~~~~~~~Liv~--~~~~~~~~nl~~s~rNip~v~v~~~~~~~~~~~~~~~~~ 195 (225)
T 1dmg_A 118 RENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVL--PWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVR 195 (225)
T ss_dssp HTTCEEEESCCCCSSCCHHHHHHHHHHTTCTTSCEEEEE--CCCSHHHHHHHHHHTTCTTEEEEECCCCSSCCSSCCCCC
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEE--CCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC
T ss_conf 279579961454567568999999987386766314531--243311467899872789944873465321112344466
Q ss_pred ---CCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf ---3299999999988899989999999999
Q gi|254781011|r 186 ---ATWNDILTIAEKLKIFNHDVLEEVRCFL 213 (228)
Q Consensus 186 ---~t~~~il~~l~~~~~I~~~~~~~I~~~l 213 (228)
++.-||+.. +.=.|+++-++.|++++
T Consensus 196 ~~~lnvydlL~~--~~lVit~~Al~~Lee~L 224 (225)
T 1dmg_A 196 IDGLNVFDMLKY--DYLVLTRDMVSKIEEVL 224 (225)
T ss_dssp CTTCCHHHHHHS--SEEEEEHHHHHHHHHHH
T ss_pred CCCCCHHHHHCC--CCEEEEHHHHHHHHHHC
T ss_conf 578559998458--91998599999999870
No 126
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=50.27 E-value=10 Score=17.61 Aligned_cols=14 Identities=0% Similarity=-0.102 Sum_probs=7.4
Q ss_pred HHHHHHHHHCCCEE
Q ss_conf 24899999779809
Q gi|254781011|r 169 PEVPARFRENNIKL 182 (228)
Q Consensus 169 ~~~~~~l~~~gi~~ 182 (228)
+...++..+.|+.-
T Consensus 95 ~~~~~~~~~~G~~~ 108 (136)
T 1dcf_A 95 KSTKEKCMSFGLDG 108 (136)
T ss_dssp HHHHHHHHHTTCCE
T ss_pred HHHHHHHHHCCCCE
T ss_conf 99999999869998
No 127
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus}
Probab=50.13 E-value=9.6 Score=17.82 Aligned_cols=40 Identities=25% Similarity=0.418 Sum_probs=34.4
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 037334144087887322369999999986598785688887
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228)
.+.+|++++-|++.-..+.|..++++++++.|-.|. +++.
T Consensus 43 GL~~GD~I~~Ing~~v~~~~~~~~v~~l~~~~~~v~--l~V~ 82 (106)
T 3ngh_A 43 GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVT--LLVL 82 (106)
T ss_dssp TCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEE--EEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE--EEEE
T ss_conf 998899999999999889999999999876999799--9999
No 128
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=50.00 E-value=7.9 Score=18.38 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=33.9
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+..|++++-|++.-.+|-|..++++.|++.+..|.
T Consensus 44 ~gl~~GD~Il~VNg~~v~~~~~~~v~~~lr~~~~~v~ 80 (90)
T 2he4_A 44 SGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEAR 80 (90)
T ss_dssp HTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 7999999999999999899989999999876999799
No 129
>2v90_A PDZ domain-containing protein 3; alternative splicing, membrane, cytoplasm, protein-binding; 2.00A {Homo sapiens}
Probab=49.90 E-value=8.4 Score=18.20 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=34.5
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 037334144087887322369999999986598785688887
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228)
.+.+|++++=|++.-..+.|..++++.++..|-.|. +++.
T Consensus 47 GL~~GD~Il~Ing~~v~~~s~~~v~~~l~~~~~~v~--L~v~ 86 (96)
T 2v90_A 47 GMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVS--LTVV 86 (96)
T ss_dssp TCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEE--EEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE--EEEE
T ss_conf 999899999999999899999999999877989799--9998
No 130
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=49.88 E-value=3 Score=21.09 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=34.1
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|+++|-|+++-..+-|..+++++|++++-.|.
T Consensus 60 ~G~L~~GD~Il~VNg~~v~~~t~~e~v~~l~~~~~~v~ 97 (111)
T 1uju_A 60 DGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLT 97 (111)
T ss_dssp HSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 59999898999999999889989999999972899499
No 131
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=49.65 E-value=9.6 Score=17.81 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=34.2
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-.+|.|..++++.+++++-.|.
T Consensus 45 ~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v~ 82 (95)
T 2vwr_A 45 DGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVN 82 (95)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 29999999999999999468999999999974999699
No 132
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=49.51 E-value=10 Score=17.67 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=38.1
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHH-HHHHHHHHHHHHHHCCCEEE
Q ss_conf 178763156420110013310373341440878873-22369999999986598785
Q gi|254781011|r 102 PMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVT-LGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 102 p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviT-tG~S~~~~i~~l~~~g~~V~ 157 (228)
+-+|+.+= .. |--....|.+..|++++=|++.-- .|-|..+++++|++.+..|.
T Consensus 49 ~gi~I~~V-~~-gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~a~~~lk~~~~~v~ 103 (117)
T 2o2t_A 49 LGIFVQEI-QE-GSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQ 103 (117)
T ss_dssp EEEEECCC-CT-TSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEE
T ss_pred CCEEEEEE-CC-CCCHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHCCCCEEE
T ss_conf 68899997-88-982898299989999999999997779899999999973999599
No 133
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=49.32 E-value=4.9 Score=19.69 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=39.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 7178763156420110013310373341440878873223699999999865987856
Q gi|254781011|r 101 LPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 101 ~p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
-+-+|+.+= ...| -.--.|.+..|++++=|+++-..|-|..+++++|+.++..+.-
T Consensus 32 ~~~i~V~~v-~~gs-~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~~~l 87 (127)
T 1b8q_A 32 KPPVIISDL-IRGG-AAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV 87 (127)
T ss_dssp SSCEEECCC-SSSS-SHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEE
T ss_pred CCCEEEEEE-CCCC-HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf 999999997-9999-8998399999989999899998899699999999729997699
No 134
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=49.23 E-value=8.3 Score=18.23 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=35.2
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 31037334144087887322369999999986598785688
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI 160 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~ 160 (228)
-| +..|++++-|+..-..|-|..+++++|++++-.|.-.+
T Consensus 81 aG-L~~GD~Il~VNg~~v~~~~~~~~v~~i~~~~~~v~l~v 120 (132)
T 3l4f_D 81 AG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 120 (132)
T ss_dssp GT-CCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEEE
T ss_pred CC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 49-98899999999989999989999999981999699999
No 135
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=48.81 E-value=14 Score=16.80 Aligned_cols=62 Identities=19% Similarity=0.053 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEE-EEECCCC---------------HHHHHHHHHCCCEEEEECCHHHHHHHHHHC
Q ss_conf 873223699999999865987856888-8741763---------------248999997798099963299999999988
Q gi|254781011|r 135 LVTLGNSMFEFVKVIRDSGGIIQDGIG-LFFYDIF---------------PEVPARFRENNIKLHYLATWNDILTIAEKL 198 (228)
Q Consensus 135 viTtG~S~~~~i~~l~~~g~~V~~~~v-ii~~~~~---------------~~~~~~l~~~gi~~~sl~t~~~il~~l~~~ 198 (228)
|+.--|-...++++.+-+|...++++| +++.+.. +...+--++++++ +++++||++|.++.
T Consensus 147 vl~R~GHTEaavdL~~lAGl~P~avicEil~d~g~~~~~~~~~~g~ma~~~~l~~fA~~~~lp---~isi~dli~yr~~~ 223 (233)
T 1k4i_A 147 VRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLK---VCTIEDMIAHVEKT 223 (233)
T ss_dssp HHHCCSHHHHHHHHHHHTTCCSBEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCE---EEEHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC---EEEHHHHHHHHHHC
T ss_conf 268897889999999980999728999994089864542233431224539999999983997---99899999999850
Q ss_pred C
Q ss_conf 8
Q gi|254781011|r 199 K 199 (228)
Q Consensus 199 ~ 199 (228)
.
T Consensus 224 e 224 (233)
T 1k4i_A 224 E 224 (233)
T ss_dssp H
T ss_pred C
T ss_conf 1
No 136
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=48.63 E-value=8.1 Score=18.28 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=34.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|+++-.+|-|..+++++|+..+-.|.
T Consensus 54 ~G~L~~GD~Il~INg~~v~~~s~~e~~~ll~~~~~~v~ 91 (119)
T 1tp5_A 54 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT 91 (119)
T ss_dssp HSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 39899999999999989889989999999985999699
No 137
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=48.41 E-value=7.5 Score=18.51 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=33.6
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+.+|++++-|++.-+.+-+..+++++++.++-.|.
T Consensus 46 ~~L~~GD~Il~INg~~v~~~t~~~~~~li~~~~~~v~ 82 (94)
T 1vb7_A 46 ADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLR 82 (94)
T ss_dssp HTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 7999999999899999999999999999877998399
No 138
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=48.37 E-value=9.6 Score=17.80 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=34.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|+++-+.|-|..+++++|++++..|.
T Consensus 46 ~g~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~ 83 (98)
T 2opg_A 46 DGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR 83 (98)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 29999999999999999989989999999975998699
No 139
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consortium, SGC, unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=47.21 E-value=9.8 Score=17.75 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=33.6
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+..|++++=|++.-..|-|..+++++|+.++-.|.
T Consensus 43 ~gL~~GD~Il~INg~~v~~~~~~e~~~~l~~~~~~v~ 79 (91)
T 2pkt_A 43 ANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLT 79 (91)
T ss_dssp TTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 7999999999899999999989999999877998299
No 140
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=47.15 E-value=10 Score=17.56 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=33.2
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 037334144087887322369999999986598785
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.+..|++++-|++.-..+-|..+++..+++++-.|.
T Consensus 49 GL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~ 84 (91)
T 1m5z_A 49 GLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLD 84 (91)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 163999999999999899999999999876999899
No 141
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=47.11 E-value=10 Score=17.69 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=32.9
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
| +..|++++-|++.-.++-+..+++++|++.+..|.
T Consensus 63 g-L~~GD~Il~VNg~~v~~~~~~~vv~~lk~~~~~v~ 98 (110)
T 1x5q_A 63 G-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQ 98 (110)
T ss_dssp T-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEE
T ss_pred C-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 8-99999999999999899989999999877999799
No 142
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=47.03 E-value=7.9 Score=18.35 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=33.9
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|+..-..|.|..+++++|++.+-.|.
T Consensus 52 ~g~l~~GD~Il~INg~~v~~~s~~~v~~~l~~~~~~v~ 89 (103)
T 1wfv_A 52 NGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVR 89 (103)
T ss_dssp HCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEEC
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 28989999999999999989979999999973899699
No 143
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=47.00 E-value=7.7 Score=18.42 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=33.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 31037334144087887322369999999986598785688
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI 160 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~ 160 (228)
.| +.+|++++=|++.-..|-|..+++++|+.++...+.+-
T Consensus 60 aG-L~~GD~Il~INg~~v~~~t~~evv~~lr~~~~~~v~L~ 99 (109)
T 2vsv_A 60 AG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMK 99 (109)
T ss_dssp TT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEE
T ss_pred CC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEE
T ss_conf 77-89999999999999899989999999877899748999
No 144
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=46.97 E-value=11 Score=17.42 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=33.4
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 10373341440878873223699999999865987856
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
| +..|++++-|++.-..+-|..+++++|++++..|.-
T Consensus 40 G-l~~GD~Il~VNg~~v~~~t~~~~~~ll~~~~~~v~L 76 (82)
T 1r6j_A 40 G-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI 76 (82)
T ss_dssp T-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEE
T ss_pred C-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 9-998999999999997899899999999729997999
No 145
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=46.85 E-value=3.2 Score=20.91 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=34.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 31037334144087887322369999999986598785688887
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228)
.|.+..|++++=|++.-..|.+..+++++|++++-.+...+.+.
T Consensus 58 ~g~L~~GD~Il~INg~~v~~~~~~ea~~~lk~~~~~~~~~v~l~ 101 (119)
T 2cs5_A 58 VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 101 (119)
T ss_dssp SSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 05898898999999999999989999999985788897289999
No 146
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 1ry4_A 1x8s_A 1rzx_A
Probab=46.82 E-value=8.5 Score=18.16 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 3310373341440878873223699999999865987856
Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
..|.+..|+.++=|++.-..|-|..+++++|++++..|.-
T Consensus 80 ~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l 119 (128)
T 1nf3_C 80 STGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLII 119 (128)
T ss_dssp HHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTSEEE
T ss_pred HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 8499999999999999997799799999999839995999
No 147
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=46.70 E-value=6.4 Score=18.94 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=34.2
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 103733414408788732236999999998659878568
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228)
|.+..|++++=|++.-..|-|..+++++|+.++..+.-.
T Consensus 59 g~l~~GD~Il~VNg~~v~~~s~~~v~~~lr~~~~~~~l~ 97 (119)
T 1x6d_A 59 GTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAV 97 (119)
T ss_dssp TSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEE
T ss_conf 998899999999999877997999999997389976999
No 148
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=46.52 E-value=10 Score=17.63 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=34.9
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 31037334144087887322369999999986598785688887
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228)
.|.+.+|+.++=|++.-..|-|..++++.|++++....-.+++.
T Consensus 55 ~G~l~~GD~Il~INg~~v~~~t~~e~~~ll~~~~~~~~v~l~v~ 98 (111)
T 2koj_A 55 DGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVF 98 (111)
T ss_dssp HCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 19999999999999999889999999999981899998999998
No 149
>1x45_A Amyloid beta (A4) precursor protein-binding, family A, member 1 (X11); PDZ domain, neuron-specific XII protein, adapter protein XII alpha; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=46.43 E-value=8.4 Score=18.17 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=37.1
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 31037334144087887322369999999986598785688887
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228)
.|.+..|+.++=|++.-..+-|..+++++|+.+...+.-.+.++
T Consensus 49 ~G~l~~GD~Il~INg~~v~~~t~~~~~~~l~~~~~~~~v~l~i~ 92 (98)
T 1x45_A 49 SGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIV 92 (98)
T ss_dssp HCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 29999999999999999889989999999973999848999996
No 150
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=46.40 E-value=8.4 Score=18.17 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=34.7
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 3103733414408788732236999999998659878568888
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL 162 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vi 162 (228)
.| +.+|++++=|++.-..+-+..+++++|+..+...+.+.++
T Consensus 52 aG-L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~~v~l~v~ 93 (111)
T 1vae_A 52 AG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV 93 (111)
T ss_dssp HH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEE
T ss_pred CC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf 49-9889999999999989998999999987689986899997
No 151
>2jba_A Phosphate regulon transcriptional regulatory protein PHOB; transcription factor, sensory transduction, phosphate regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=46.13 E-value=13 Score=17.01 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2369999999986
Q gi|254781011|r 139 GNSMFEFVKVIRD 151 (228)
Q Consensus 139 G~S~~~~i~~l~~ 151 (228)
+.+-.+.++.+|+
T Consensus 58 ~~~G~~l~~~ir~ 70 (127)
T 2jba_A 58 GGSGIQFIKHLRR 70 (127)
T ss_dssp TEEHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
T ss_conf 9628999999984
No 152
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=46.08 E-value=11 Score=17.52 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=34.1
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-..|.+..+++++|+.....|.
T Consensus 47 ~g~L~~GD~Il~INg~~v~~~~~~~v~~ll~~~~~~v~ 84 (96)
T 2qkv_A 47 DSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVS 84 (96)
T ss_dssp HHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 09998899999999999779989999999977998599
No 153
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consortium, SGC, cytoplasm, polymorphism, protein binding; 2.60A {Homo sapiens}
Probab=45.93 E-value=9.4 Score=17.87 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=35.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 31037334144087887322369999999986598785688887
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228)
.|.+..|++++=|++.-.+|.|..++++.|++....+.-.+.++
T Consensus 44 ~G~l~~GD~Il~VNg~~v~~~t~~ev~~~Lk~~~~~~~~~l~l~ 87 (95)
T 3gge_A 44 VKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLI 87 (95)
T ss_dssp CTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 29999999999999999889979999999976999978999993
No 154
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=45.69 E-value=9.5 Score=17.83 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=39.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHH
Q ss_conf 310373341440878873223699999999865987856888874176324899999
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFR 176 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~ 176 (228)
-|.+..|++++-|++.-.+|-|..+++++|++++-.|. + ++.|+ +....+++
T Consensus 51 ~G~l~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~~~v~-L--~v~~~--p~~~~~~~ 102 (104)
T 3i4w_A 51 SGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT-I--IAQYK--PEEYSRFE 102 (104)
T ss_dssp HCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEE-E--EEEEC--HHHHHHHH
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE-E--EEEEC--CCCCCHHC
T ss_conf 49899999999989946589989999999983999199-9--99989--84356300
No 155
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=45.23 E-value=11 Score=17.41 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=33.5
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+..|++++=|++.-..+-|-.+++++|++++..+.
T Consensus 47 ~gL~~GD~Il~INg~~v~~~t~~~~~~~l~~~~~~v~ 83 (90)
T 1y7n_A 47 GGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIH 83 (90)
T ss_dssp HTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 7999999999999999799989999999875999799
No 156
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=44.99 E-value=6.6 Score=18.86 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=34.1
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++-|+++-.++-+..+++++|++.+-.|.
T Consensus 65 ~G~l~~GD~Il~VNg~~v~~~t~~ev~~~i~~~~~~v~ 102 (117)
T 1ujd_A 65 TGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAE 102 (117)
T ss_dssp HSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 49999999999999999789979999999983999599
No 157
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=44.75 E-value=11 Score=17.35 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=32.4
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
|.+..|+++|=|+++-..|-|..+++++|+..+-..+
T Consensus 74 G~l~~GD~Il~INg~~v~~~t~~e~v~~lr~~~~~~v 110 (130)
T 1i16_A 74 ETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPV 110 (130)
T ss_dssp CCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEE
T ss_conf 8998789999999999889979999999971899759
No 158
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=44.64 E-value=7.6 Score=18.45 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=34.5
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 31037334144087887322369999999986598785688887
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLF 163 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii 163 (228)
.|.+..|++++=|++.-.+|-|..+++++|+++...+.-.+.++
T Consensus 53 ~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~~~v~l~v~ 96 (101)
T 2yt7_A 53 SGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIV 96 (101)
T ss_dssp GSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEEC
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 39998799999999999889989999999974999998999998
No 159
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; zinc, structural genomics consortium, SGC, alternative splicing; 1.60A {Homo sapiens}
Probab=44.57 E-value=11 Score=17.48 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=32.8
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC--CCEEE
Q ss_conf 310373341440878873223699999999865--98785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDS--GGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~--g~~V~ 157 (228)
.|.+..|++++=|++.-.+|.|..++++.|++. |..|.
T Consensus 40 ~~~l~~GD~Il~INg~~v~~~~~~e~v~~ir~~~~~~~v~ 79 (88)
T 3bpu_A 40 SRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVT 79 (88)
T ss_dssp CTTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 8499989999999999978998999999997399989999
No 160
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=44.36 E-value=9.4 Score=17.86 Aligned_cols=38 Identities=26% Similarity=0.541 Sum_probs=32.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC--CCEEE
Q ss_conf 310373341440878873223699999999865--98785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDS--GGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~--g~~V~ 157 (228)
.|.+..|++++-|++.-..|.+..+++++|+.. |..|.
T Consensus 65 ~G~l~~GD~Il~INg~~v~~~~~~ev~~~lk~~~~g~~v~ 104 (126)
T 1wif_A 65 DGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQ 104 (126)
T ss_dssp CSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 0999989999999999978998999999996799999899
No 161
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=44.05 E-value=8.2 Score=18.24 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=36.0
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 3103733414408788732236999999998659878568
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228)
.|.+..|+++|-|+++-..|-|..+++++|++++..|.-.
T Consensus 119 ~g~l~~GD~il~vng~~~~~~~~~~~~~~l~~~~~~v~l~ 158 (263)
T 1z87_A 119 TEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLE 158 (263)
T ss_dssp CTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 0899999999998996788995999999998589978899
No 162
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=43.61 E-value=8.9 Score=18.02 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=33.5
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+..|+.++=|++.-+.+-|..++++.|++++-.|.
T Consensus 41 ~gL~~GD~Il~INg~~v~~~s~~ev~~~i~~~~~~v~ 77 (85)
T 1rgw_A 41 SQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLS 77 (85)
T ss_dssp SSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 8899999999899999999979999999975999799
No 163
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=42.40 E-value=6.3 Score=18.98 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 3103733414408788732236999999998659878568
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228)
.|.+..|++++=|+..-..+.+..+++++|++++..+.-.
T Consensus 61 ~G~L~~GD~Il~INg~~v~~~~~~e~~~~l~~~~~~~~l~ 100 (122)
T 1v5q_A 61 CGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVT 100 (122)
T ss_dssp SCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 0998789999999999999997999999998189950899
No 164
>2uzc_A Human pdlim5, PDZ and LIM domain 5; polymorphism, metal-binding, enigma homolog, phosphorylation, signaling protein, zinc, PDZ domain, acetylation; 1.5A {Homo sapiens}
Probab=42.26 E-value=13 Score=16.97 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=33.4
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+.+|++++=|+++-..+-|-.++++.|+.++-.|.
T Consensus 43 ~gL~~GD~Il~INg~~v~~~t~~ea~~~l~~~~~~v~ 79 (88)
T 2uzc_A 43 ANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLN 79 (88)
T ss_dssp TTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 6999998999999999999989999999876999799
No 165
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=42.25 E-value=8.1 Score=18.28 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=34.7
Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 3310373341440878873223699999999865987856
Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
..|.+..|+.++=|++.-+.|-|..+++++|++++..+..
T Consensus 56 ~~G~L~~GD~Il~VNg~~v~~~s~~e~~~llk~~~~~~~~ 95 (109)
T 1wi4_A 56 KDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSES 95 (109)
T ss_dssp HHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSS
T ss_pred HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 8698778999999999998899799999999877799886
No 166
>2vph_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, ptpmeg, hydrolase, cytoplasm, cytoskeleton, megakaryocyte, dephosphorylation; 1.90A {Homo sapiens}
Probab=42.23 E-value=5.1 Score=19.57 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=35.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 3103733414408788732236999999998659878568888
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL 162 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vi 162 (228)
+|.+.+|++++=|++.-..|-|..+++++|++++..+...+.+
T Consensus 47 ~g~L~~GD~Il~INg~~v~~~~~~~~~~~lr~~~~~~~~~v~l 89 (100)
T 2vph_A 47 VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELML 89 (100)
T ss_dssp SSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGCBTTBEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 2899999999999999989998999999998668889739999
No 167
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylation, SH3 domain, protein bindin; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=42.17 E-value=13 Score=16.84 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=34.6
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|+.++=|++.-..+-|..+++.++++.+..|.
T Consensus 37 ~G~L~~GD~Il~vNg~~v~~~~~~~~~~~i~~~~~~v~ 74 (81)
T 2rcz_A 37 DGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLK 74 (81)
T ss_dssp HSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 69998999999999999888989999999877989799
No 168
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=42.16 E-value=13 Score=16.99 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=35.1
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC
Q ss_conf 1037334144087887322369999999986598785688887417
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYD 166 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~ 166 (228)
| +.+|++++-|++.-..+-+..++++.+++.+-.|. ..+.|+
T Consensus 51 g-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~---l~v~R~ 92 (97)
T 2w4f_A 51 G-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQ---MRVWRE 92 (97)
T ss_dssp T-CCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEE---EEEECC
T ss_pred C-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE---EEEEEC
T ss_conf 9-99999999999999999999999999768989899---999989
No 169
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=42.12 E-value=11 Score=17.55 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=34.0
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
++.+..|+.++=|++.-..+-|-.+++++|++.+-.|.
T Consensus 44 ~~gL~~GD~Il~VNg~~v~~~s~~eav~~l~~~~~~v~ 81 (103)
T 1v5l_A 44 AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLC 81 (103)
T ss_dssp GGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 76999999999999998589989999999876999799
No 170
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=41.26 E-value=11 Score=17.33 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=34.0
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 1037334144087887322369999999986598785688
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI 160 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~ 160 (228)
|.+..|++++=|++.-..|-|..+++++|+.....+.-.+
T Consensus 43 G~L~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~~~~~l 82 (112)
T 1qau_A 43 GLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL 82 (112)
T ss_dssp TCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 9996799999999999989989999999867999938999
No 171
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=40.38 E-value=15 Score=16.49 Aligned_cols=59 Identities=8% Similarity=-0.117 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEE--CCHHHHHHHH
Q ss_conf 873223699999999865987856888874176324899999779809996--3299999999
Q gi|254781011|r 135 LVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYL--ATWNDILTIA 195 (228)
Q Consensus 135 viTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl--~t~~~il~~l 195 (228)
+---+.+-++.++.+++.+..+. ++++..++..+...+.+ +.|..-|=. ++.+++++.+
T Consensus 55 ~~mP~~~G~e~~~~ir~~~~~~~-ii~lt~~~~~~~~~~a~-~~Ga~~yl~KP~~~~~L~~~l 115 (120)
T 1tmy_A 55 ITMPEMNGIDAIKEIMKIDPNAK-IIVCSAMGQQAMVIEAI-KAGAKDFIVKPFQPSRVVEAL 115 (120)
T ss_dssp CSCGGGCHHHHHHHHHHHCTTCC-EEEEECTTCHHHHHHHH-HTTCCEEEESSCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHHHHHHH
T ss_conf 36899979999999997587997-89997428999999999-869989997989999999999
No 172
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=40.36 E-value=8.9 Score=18.02 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=20.9
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4087887322369999999986598
Q gi|254781011|r 130 LVIEDLVTLGNSMFEFVKVIRDSGG 154 (228)
Q Consensus 130 liVDDviTtG~S~~~~i~~l~~~g~ 154 (228)
+||||.+.+-...-++++.|+..|+
T Consensus 152 lVVdd~~~~~~KTKeav~~Lk~lgl 176 (421)
T 2zkr_c 152 LVVEDKVEGYKKTKEAVLLLKKLKA 176 (421)
T ss_dssp EEECGGGGGCCCHHHHHHHHHHTTC
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf 7970452245458999999998499
No 173
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=40.33 E-value=16 Score=16.40 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=32.2
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC--CCEEE
Q ss_conf 10373341440878873223699999999865--98785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDS--GGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~--g~~V~ 157 (228)
+.+.+|++++-|++.-..|-|-.++++.||+. |-.|.
T Consensus 46 ~~L~~GD~Il~VNg~~v~~~t~~evv~~lr~~~~g~~v~ 84 (96)
T 1ujv_A 46 PGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETS 84 (96)
T ss_dssp TTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 788999999999999968998999999997299999899
No 174
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=40.26 E-value=15 Score=16.53 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=32.8
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
| +.+|+.++=|++.-.++-+..+++++|+..+.+|.
T Consensus 53 G-L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~ 88 (100)
T 1whd_A 53 G-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEII 88 (100)
T ss_dssp T-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEE
T ss_pred C-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 9-99999999999999999999999999767999799
No 175
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=39.85 E-value=16 Score=16.40 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=34.6
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
Q ss_conf 0373341440878873223699999999865987856888874
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFF 164 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~ 164 (228)
.+..|+.++-|+..-.+|-|..++++.|+..+-.|. +.+..
T Consensus 44 Gl~~GD~Il~INg~~v~~~~~~ev~~li~~~~~~v~--L~V~~ 84 (91)
T 1g9o_A 44 GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVR--LLVVD 84 (91)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE--EEEEC
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE--EEEEC
T ss_conf 999899999999999999989999999975999799--99989
No 176
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.48 E-value=14 Score=16.81 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=33.2
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+..|++++=|++.-.++-+..+++++|++.+-.|.
T Consensus 46 ~gL~~GD~Il~INg~~v~~~~~~ev~~~i~~~~~~v~ 82 (102)
T 2d90_A 46 AGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTT 82 (102)
T ss_dssp TTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 6998899999999999899989999999974999699
No 177
>1u37_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1u38_A
Probab=38.62 E-value=13 Score=16.87 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=31.9
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 310373341440878873223699999999865987
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~ 155 (228)
.|.+..|++++=|++.-..|-|..+++++|++++-.
T Consensus 45 ~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~ 80 (89)
T 1u37_A 45 SGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 80 (89)
T ss_dssp HTCCCSSCEEEEETTEECTTSCHHHHHHHHHTCSSS
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCC
T ss_conf 198999999999999998899899999999739999
No 178
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=38.36 E-value=15 Score=16.45 Aligned_cols=38 Identities=21% Similarity=0.494 Sum_probs=32.8
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC--CCEEE
Q ss_conf 310373341440878873223699999999865--98785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDS--GGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~--g~~V~ 157 (228)
.|.+..|++++=|+..-.+|-|..+++++|+.+ |..|.
T Consensus 59 ~g~l~~GD~Il~INg~~v~~~t~~eav~~lr~~~~g~~v~ 98 (129)
T 2kpk_A 59 DGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD 98 (129)
T ss_dssp HSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 5899889899999999878998999999996799999899
No 179
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A
Probab=38.11 E-value=19 Score=15.90 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=33.7
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 03733414408788732236999999998659878568
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDG 159 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~ 159 (228)
.+..|+.++=|++.-..|.+..++++.+++.|-.|.-.
T Consensus 51 Gl~~GD~Il~VNg~~v~~~~~~~~~~~l~~~g~~v~L~ 88 (99)
T 3khf_A 51 GLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLR 88 (99)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 53799999999998989999999999987698979999
No 180
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=38.05 E-value=12 Score=17.26 Aligned_cols=38 Identities=24% Similarity=0.443 Sum_probs=34.0
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++=|++.-..+-|..++++.|++++..|.
T Consensus 52 ~G~l~~GD~Il~VNg~~v~~~s~~ev~~llk~~~~~v~ 89 (97)
T 2ejy_A 52 QGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMIS 89 (97)
T ss_dssp HTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEE
T ss_pred HCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEE
T ss_conf 09987899999999999589999999999976999699
No 181
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=37.71 E-value=19 Score=15.91 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=33.2
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 0373341440878873223699999999865987856
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
.+.+|++++-|+..-.++-+..++++++++.|-.|.-
T Consensus 54 GL~~GD~I~~Ing~~v~~~~~~~~~~~i~~~~~~v~L 90 (96)
T 2ego_A 54 GLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90 (96)
T ss_dssp TCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 8988999999999998899999999998769998999
No 182
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=37.28 E-value=16 Score=16.34 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHCCCCEEEE
Q ss_conf 12578899985158717876
Q gi|254781011|r 87 AGIPFATLLAERLNLPMIYV 106 (228)
Q Consensus 87 ~Gip~a~~iA~~l~~p~~~v 106 (228)
.|+-++..+-..-++|.++.
T Consensus 65 dG~e~~~~ir~~~~~PvI~l 84 (140)
T 3h5i_A 65 DGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp CHHHHHHHHHHHCCCCEEEE
T ss_pred CHHHHHHHHHHCCCCCEEEE
T ss_conf 89999999985699989999
No 183
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=36.44 E-value=17 Score=16.26 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=30.3
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 310373341440878873223699999999865
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDS 152 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~ 152 (228)
.|.+..|++++-|++.-..|-|..+++++|+++
T Consensus 59 ~G~L~~GD~Il~VNg~~v~~~t~~ea~~~l~~a 91 (118)
T 1v6b_A 59 HGGVVKGDEIMAINGKIVTDYTLAEAEAALQKA 91 (118)
T ss_dssp HCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHHC
T ss_conf 099987999999999998899799999999864
No 184
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=36.25 E-value=19 Score=15.91 Aligned_cols=38 Identities=21% Similarity=0.494 Sum_probs=32.8
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC--CCEEE
Q ss_conf 310373341440878873223699999999865--98785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDS--GGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~--g~~V~ 157 (228)
.|.+..|++++-|++.-..|.|..++++.|+++ |..|.
T Consensus 41 ~G~l~~GD~Il~VNg~~v~~~~~~ev~~~l~~~~~g~~v~ 80 (85)
T 2i04_A 41 DGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD 80 (85)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 2989899999999999988996999999997699989999
No 185
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=35.90 E-value=8.5 Score=18.14 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 3310373341440878873223699999999865987
Q gi|254781011|r 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 (228)
Q Consensus 119 iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~ 155 (228)
..|.+..|++++=|++.-..|-|..++++.|++....
T Consensus 48 ~~G~L~~GD~Il~VNg~~l~~~s~~ea~~~lr~~~~~ 84 (108)
T 3cbz_A 48 ADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK 84 (108)
T ss_dssp HHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS
T ss_pred HHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCC
T ss_conf 8099969999999999998899899999999855568
No 186
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=35.09 E-value=13 Score=16.97 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 037334144087887322369999999986598785
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.+..|++++=|++.-..+.+..+++++|++.|-.|.
T Consensus 65 gl~~GD~Il~VNg~~v~~~~~~~~~~~i~~~~~~v~ 100 (104)
T 2z17_A 65 GLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLT 100 (104)
T ss_dssp TCCTTCBCCEETTEECTTCCHHHHHHHHHHTTTEEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 898899999999999899999999999976989799
No 187
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=35.05 E-value=22 Score=15.43 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999986597
Q gi|254781011|r 11 IIAELVAKMLFEIKA 25 (228)
Q Consensus 11 ~~~~~~a~~L~~~~a 25 (228)
...+.+.+.|-..|+
T Consensus 23 ~~~~~l~~~L~~~G~ 37 (196)
T 1qo0_D 23 EVSDALVLQLIRIGC 37 (196)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999998699
No 188
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=35.01 E-value=22 Score=15.43 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=7.7
Q ss_pred HHHHHHHHHHCCCEEE
Q ss_conf 9999999986598785
Q gi|254781011|r 142 MFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 142 ~~~~i~~l~~~g~~V~ 157 (228)
....+++++..|..+.
T Consensus 238 ~~~~~~al~~~~~~~i 253 (404)
T 3h4t_A 238 ARVAIEAVRAQGRRVV 253 (404)
T ss_dssp HHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHCCCEEE
T ss_conf 9999999996798699
No 189
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.71 E-value=10 Score=17.65 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=31.8
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+.+|++++-|++.-..+ +-.+++++|++++-.|.
T Consensus 51 ~g~L~~GD~Il~VNg~~v~~-~~~e~v~lik~~~~~v~ 87 (100)
T 2edp_A 51 SQKMRTGDELVNINGTPLYG-SRQEALILIKGSFRILK 87 (100)
T ss_dssp HTSCCTTCEEEEETTEECCS-CSHHHHHHHHTCCSSCE
T ss_pred HCCCCCCCEEEEECCEECCC-CHHHHHHHHHHCCCEEE
T ss_conf 39998899999999998427-89999999980899299
No 190
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=34.07 E-value=23 Score=15.33 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
++.+..|++++-|++.-..+-+-.+++++++..+..+.
T Consensus 38 ~~~l~~gD~i~~vn~~~~~~~~~~~a~~~~~~~~~~~~ 75 (195)
T 2qbw_A 38 SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVE 75 (195)
T ss_dssp TTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred HHCCCCCCEEEEECCEEEEEEHHHHHHHHHHCCCCEEE
T ss_conf 84467899999999959786028899999860797689
No 191
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=33.96 E-value=22 Score=15.42 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=31.9
Q ss_pred CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 37334144087887322369999999986598785
Q gi|254781011|r 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+..|++++=|++.-..+-+..+++++++..+-.|.
T Consensus 42 L~~GD~Il~INg~~v~~~~~~~v~~~i~~~~~~v~ 76 (91)
T 2f5y_A 42 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEII 76 (91)
T ss_dssp CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 97799999999999799999999999877999799
No 192
>2ixs_A SDAI restriction endonuclease; hydrolase, domain architecture; HET: EPE; 2.0A {Streptomyces diastaticus}
Probab=33.85 E-value=20 Score=15.76 Aligned_cols=38 Identities=5% Similarity=-0.097 Sum_probs=20.6
Q ss_pred CEEEHHHHHHHHH----HHHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 1440878873223----6999999998659878568888741
Q gi|254781011|r 128 RVLVIEDLVTLGN----SMFEFVKVIRDSGGIIQDGIGLFFY 165 (228)
Q Consensus 128 ~vliVDDviTtG~----S~~~~i~~l~~~g~~V~~~~vii~~ 165 (228)
=+++||=|.|.|- -..+.-++.++..+.++-+-+..+|
T Consensus 243 wL~~IEaVtS~GPv~~~R~~eL~~l~~~~~~glvfVTAF~dR 284 (323)
T 2ixs_A 243 WLFLMEAVKSKGPFDEERHRTLRELFATPVAGLVFVNCFENR 284 (323)
T ss_dssp EEEEEEECCTTCCCCHHHHHHHHHHTCBTTBEEEEEEEESSH
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCH
T ss_conf 899999974779989899999999973688886999856898
No 193
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=33.50 E-value=20 Score=15.67 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=32.0
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
|.+..|++++=|++.-.++-|..+++++|++.+..+.
T Consensus 152 G~L~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~~~v~ 188 (200)
T 2qt5_A 152 GTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAT 188 (200)
T ss_dssp CCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 8999998999899989899989999999983899789
No 194
>1u39_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=33.39 E-value=21 Score=15.59 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=33.1
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+..|++++=|++.-..+-|..+++++|+.++..|.
T Consensus 38 ~gL~~GD~Il~VNg~~v~~~s~~~~~~ll~~~~~~v~ 74 (80)
T 1u39_A 38 GGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIH 74 (80)
T ss_dssp HTCCTTEEECEETTEEGGGSCHHHHHHHHHTCCEEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 6999999999999999799979999999866989899
No 195
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=33.09 E-value=23 Score=15.29 Aligned_cols=38 Identities=21% Similarity=0.500 Sum_probs=32.6
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC--CCEEE
Q ss_conf 310373341440878873223699999999865--98785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDS--GGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~--g~~V~ 157 (228)
.|.+..|++++=|+.+-..|-+..+++++|+.. |..|.
T Consensus 60 ~g~L~~GD~Il~INg~~v~~~~~~e~~~~l~~~~~~~~v~ 99 (123)
T 1ueq_A 60 DGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVN 99 (123)
T ss_dssp TSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 3899888799998996727988999999996699999899
No 196
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=32.74 E-value=7.5 Score=18.50 Aligned_cols=38 Identities=13% Similarity=0.430 Sum_probs=32.4
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC--CEEE
Q ss_conf 3103733414408788732236999999998659--8785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG--GIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g--~~V~ 157 (228)
-|.+..|++++=|++.-..+.|..+++++|+.++ ..|.
T Consensus 50 ~g~L~~GD~Il~VNg~~v~~~~~~e~~~llr~~~~~~~v~ 89 (103)
T 1uep_A 50 DGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVN 89 (103)
T ss_dssp GTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEE
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 6999889999999999968997999999997399999899
No 197
>1u3b_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 2yt8_A
Probab=32.49 E-value=20 Score=15.71 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=32.5
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+.+|++++-|++.-+.+-|-.+++++|+.++..|.
T Consensus 128 ~gL~~GD~Il~VNG~~v~~~s~~e~~~ll~~~~~~v~ 164 (185)
T 1u3b_A 128 GGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIH 164 (185)
T ss_dssp HTCCTTEEEEEETTEECTTSCHHHHHHHHHTCCEEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 7899899999999989989999999999981999599
No 198
>2dvy_A Restriction endonuclease PABI; hydrolase; 3.00A {Pyrococcus abyssi}
Probab=31.62 E-value=25 Score=15.07 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 2999999999888999899999999997
Q gi|254781011|r 187 TWNDILTIAEKLKIFNHDVLEEVRCFLD 214 (228)
Q Consensus 187 t~~~il~~l~~~~~I~~~~~~~I~~~l~ 214 (228)
+...+++.++-=+..|+...+.+.+.++
T Consensus 193 ~~~~~lEmlKiFglLSqaHhnDVlkILe 220 (226)
T 2dvy_A 193 PVDLMKELLKAFIIASETHKNDIVKFLR 220 (226)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6789999999999877765766999999
No 199
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=30.53 E-value=7.5 Score=18.51 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=31.1
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3103733414408788732236999999998659
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g 153 (228)
.|.+..|++++=|++.-..|-|..+++++|++++
T Consensus 48 ~G~L~~GD~Il~INg~~v~~~s~~e~~~ll~~a~ 81 (103)
T 1ufx_A 48 CGQLKVGHVILEVNGLTLRGKEHREAARIIAEAF 81 (103)
T ss_dssp HCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHHHC
T ss_conf 5999889999999999988997999999999864
No 200
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=29.65 E-value=27 Score=14.86 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=31.5
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
|.+.+|++++-|+..-.++.|..+++++|++.+..|.
T Consensus 152 G~L~~GD~Il~INg~~v~~~s~~~~~~~L~~~~~~v~ 188 (196)
T 1p1d_A 152 GTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVK 188 (196)
T ss_dssp SCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 7998898999899999889999999999984999799
No 201
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=29.64 E-value=27 Score=14.86 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=36.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 787631564201100133103733414408788732236999999998659
Q gi|254781011|r 103 MIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 (228)
Q Consensus 103 ~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g 153 (228)
.+||++=.+ |--....|.+..|++++=|++.-..|-|..+++++|++++
T Consensus 56 ~i~V~~V~~--gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~evv~~lr~a~ 104 (127)
T 1wg6_A 56 GIFIKSIIH--GGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSM 104 (127)
T ss_dssp EEEEEECCS--SSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECC--CCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCC
T ss_conf 989999899--9808755997769999999999988998999999998644
No 202
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=29.54 E-value=17 Score=16.20 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=32.9
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 1037334144087887322369999999986598785
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+.+..|++++-|+++-..+-+..+++.+|++++-.|.
T Consensus 58 ~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~ 94 (117)
T 1uit_A 58 AGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTIT 94 (117)
T ss_dssp HTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 7999999999999999889999999999877998499
No 203
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica}
Probab=29.39 E-value=27 Score=14.83 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=5.9
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99985158717876
Q gi|254781011|r 93 TLLAERLNLPMIYV 106 (228)
Q Consensus 93 ~~iA~~l~~p~~~v 106 (228)
..+..+.+.|.+..
T Consensus 66 ~~l~~~~~~~i~~~ 79 (210)
T 2xf4_A 66 SELAQHYGVPVIGP 79 (210)
T ss_dssp HHHHHHHTCCEECC
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99877509847850
No 204
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.37 E-value=19 Score=15.89 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=31.2
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 31037334144087887322369999999986598785
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.|.+..|++++-|++.- .+.+..+++++|+..+..|.
T Consensus 45 ~G~L~~GD~Il~VNg~~-v~~~~~ev~~ll~~~~~~v~ 81 (91)
T 2e7k_A 45 QGLLHVGDIIKEVNGQP-VGSDPRALQELLRNASGSVI 81 (91)
T ss_dssp HCCCCTTCEEEEETTEE-CTTCHHHHHHHHHTCCSSBC
T ss_pred CCCCCCCCEEEEECCEE-CCCCHHHHHHHHHCCCCCEE
T ss_conf 78776699999999998-78989999999866989699
No 205
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=29.06 E-value=28 Score=14.79 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=37.2
Q ss_pred HHHHHHHCCCCEEEEECCCCCC-HHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHC--CCEEE
Q ss_conf 8999851587178763156420-110013310373341440878873223699999999865--98785
Q gi|254781011|r 92 ATLLAERLNLPMIYVRKKSKKH-GQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDS--GGIIQ 157 (228)
Q Consensus 92 a~~iA~~l~~p~~~vRK~~K~h-G~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~--g~~V~ 157 (228)
|.++|..++++.--+++.-+.+ |...+.|- +.....+.++||--++-.++..+++++++. +.++.
T Consensus 350 Aia~a~~lGi~~~~i~~~L~~f~g~~~R~e~-i~~~~~~~viDDYahnP~si~a~l~al~~~~~~~rii 417 (524)
T 3hn7_A 350 AIAAAYNIGVSVKTACAALSAFAGIKRRMEL-IGDVNDILVFDDFAHHPTAITTTLDGAKKKLADRRLW 417 (524)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTCCCBTTSSEE-EEEETTEEEEEECCCSHHHHHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHCCCCHHEEEECCCCCCCCHHHHEE-EEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999997199604022200046773324035-6404781599734799899999999999766998599
No 206
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductase; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=28.87 E-value=28 Score=14.77 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=42.1
Q ss_pred CCCCCEEEHH----HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH-HHHCCCEEEEECCHHHHH
Q ss_conf 7334144087----88732236999999998659878568888741763248999-997798099963299999
Q gi|254781011|r 124 FKGARVLVIE----DLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR-FRENNIKLHYLATWNDIL 192 (228)
Q Consensus 124 ~~g~~vliVD----DviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~-l~~~gi~~~sl~t~~~il 192 (228)
..-++|+||= =|.-.=..+.+..+.|++.|.+|.-.+-=+ -+|.++-... |.+.+|++--++.+++|=
T Consensus 44 ~~A~~VIIVPGYGMAVAQAQh~V~EL~~~L~~~G~~V~faIHPV-AGRmPGhmNVLLAEa~VpYd~~~emdeiN 116 (203)
T 2fsv_C 44 KNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPV-AGRMPGHMNVLLAEANVPYDEVFELEEIN 116 (203)
T ss_dssp HHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT-CSSSTTHHHHHHHHTTCCGGGEEEHHHHG
T ss_pred HCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCEEEEEEEECCCHHHHHCHHHHC
T ss_conf 46985999758279999999999999999996898248986324-34488720689986169878863766506
No 207
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=28.66 E-value=22 Score=15.42 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=36.9
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 17876315642011001331037334144087887322369999999986598
Q gi|254781011|r 102 PMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154 (228)
Q Consensus 102 p~~~vRK~~K~hG~~~~iEG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~ 154 (228)
+.+||.+=.. |.-....|.+..|+++|=|++.-..+-+..+++++|+++..
T Consensus 65 ~gi~I~~v~~--gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~ 115 (131)
T 1wfg_A 65 LCAFITKVKK--GSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKP 115 (131)
T ss_dssp EEEEEEEECT--TSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSS
T ss_pred CCEEEEEECC--CCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCC
T ss_conf 7879999899--99899839977799999999999789989999999982899
No 208
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; Cys Ser mutant, structural genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=28.36 E-value=9.5 Score=17.84 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=31.5
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 31037334144087887322369999999986598
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~ 154 (228)
.|.+..|+.++=|++.-.+|-|..+++++|++++-
T Consensus 43 ~G~L~~GD~Il~VNg~~v~~~t~~ev~~~l~~~~~ 77 (90)
T 2q9v_A 43 DGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAK 77 (90)
T ss_dssp HCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCC
T ss_conf 59978999999999999899989999999985899
No 209
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=28.25 E-value=29 Score=14.70 Aligned_cols=11 Identities=36% Similarity=0.220 Sum_probs=4.8
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998659
Q gi|254781011|r 14 ELVAKMLFEIK 24 (228)
Q Consensus 14 ~~~a~~L~~~~ 24 (228)
.++++.|.+.|
T Consensus 43 ~el~~~L~~~g 53 (184)
T 1d4o_A 43 ADLVKMLSEQG 53 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
T ss_conf 99999999779
No 210
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=27.69 E-value=27 Score=14.91 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=30.1
Q ss_pred HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 3103733414408788732236999999998659
Q gi|254781011|r 120 EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 (228)
Q Consensus 120 EG~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g 153 (228)
.| +.+|++++-|+++-..+-+..+++++|+..+
T Consensus 57 ~G-L~~GD~Il~VNg~~v~~~~~~ea~~llk~~~ 89 (104)
T 1wi2_A 57 AG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR 89 (104)
T ss_dssp HT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS
T ss_pred CC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCC
T ss_conf 89-9999999999999999997999999986699
No 211
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.36 E-value=24 Score=15.22 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.1
Q ss_pred CCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 037334144087887322369999999986598785
Q gi|254781011|r 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 122 ~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
.+.+|++++-|++.-..+-+..+++++|+. +..|.
T Consensus 53 gL~~GD~Il~INg~~v~~~~~~~~v~ll~~-~~~v~ 87 (100)
T 2eeh_A 53 GLCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLH 87 (100)
T ss_dssp TCCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCEEE
T ss_conf 999999999999999999989999998708-99599
No 212
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 3gj9_A 2kg2_A 3dj3_A
Probab=27.35 E-value=22 Score=15.43 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=31.9
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 10373341440878873223699999999865987856
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~ 158 (228)
+.+.+|+.++=|++.-..+-|..++++.|+.+....+.
T Consensus 80 ~gL~~GD~Il~VNg~~v~~~t~~e~v~~l~~~~~~~v~ 117 (139)
T 2vz5_A 80 AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVR 117 (139)
T ss_dssp HTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 67999999999899898899999999999748999899
No 213
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=27.27 E-value=30 Score=14.59 Aligned_cols=58 Identities=14% Similarity=-0.015 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEE-E-ECC----CCHHHHHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf 8732236999999998659878568888-7-417----63248999997798099963299999999
Q gi|254781011|r 135 LVTLGNSMFEFVKVIRDSGGIIQDGIGL-F-FYD----IFPEVPARFRENNIKLHYLATWNDILTIA 195 (228)
Q Consensus 135 viTtG~S~~~~i~~l~~~g~~V~~~~vi-i-~~~----~~~~~~~~l~~~gi~~~sl~t~~~il~~l 195 (228)
|..--|-...++.+.+-+|...++++|= + +.+ +.+.+.+--++++++ +++++||+++.
T Consensus 139 vl~R~GHTEaavdL~~lAGl~P~avicEil~d~dG~~~~~~~~~~fA~~~~l~---~i~i~dli~yr 202 (204)
T 1tks_A 139 LKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIK---IININQLVEYI 202 (204)
T ss_dssp GGTCCCHHHHHHHHHHHTTSCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCC---EEEHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCC---EEEHHHHHHHH
T ss_conf 75678888999999998399961999999788998865889999999984996---99899999998
No 214
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 2ka9_A
Probab=27.14 E-value=25 Score=15.09 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=30.6
Q ss_pred HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 103733414408788732236999999998659878
Q gi|254781011|r 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 (228)
Q Consensus 121 G~~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V 156 (228)
|.+.+|++++-|++.-..+-|-.+++++|+..+..|
T Consensus 147 G~L~~GD~Il~VNg~~v~~~s~~e~~~~lk~~~~~v 182 (196)
T 3gsl_A 147 GRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 182 (196)
T ss_dssp CCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE
T ss_conf 999989999999999988999999999997599869
No 215
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri}
Probab=27.14 E-value=30 Score=14.58 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 2236999999998659
Q gi|254781011|r 138 LGNSMFEFVKVIRDSG 153 (228)
Q Consensus 138 tG~S~~~~i~~l~~~g 153 (228)
-+.+-++.++.||+..
T Consensus 61 P~~dG~el~~~ir~~~ 76 (132)
T 3lte_A 61 PKLDGLDVIRSLRQNK 76 (132)
T ss_dssp TTBCHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHCC
T ss_conf 7888999999998458
No 216
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=26.78 E-value=25 Score=15.06 Aligned_cols=38 Identities=8% Similarity=-0.056 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 29999999998889998999999999972997788609
Q gi|254781011|r 187 TWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSKKNG 224 (228)
Q Consensus 187 t~~~il~~l~~~~~I~~~~~~~I~~~l~dP~~W~~~~g 224 (228)
++.-.+......|+=-++-...-.+|...-.+-+.+.+
T Consensus 216 ~~saaiaa~La~G~~l~~Av~~A~~~v~~aI~~s~~~~ 253 (282)
T 3h74_A 216 TLAAVIAGLLGRGYPLAPTLARANQWLNMAVAETIAQN 253 (282)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999998699999999999999999999997569
No 217
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of NADP, oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=26.20 E-value=31 Score=14.47 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCCCCEEEHH----HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH-HHHCCCEEEEECCHHHHH
Q ss_conf 7334144087----88732236999999998659878568888741763248999-997798099963299999
Q gi|254781011|r 124 FKGARVLVIE----DLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR-FRENNIKLHYLATWNDIL 192 (228)
Q Consensus 124 ~~g~~vliVD----DviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~-l~~~gi~~~sl~t~~~il 192 (228)
..-++|+||= -|.-.=..+.+..+.|++.|.+|.-.+-=+ -+|.++-... |.+.+|++-.++.+++|=
T Consensus 43 ~~A~~VIIVPGYGMAVAQAQh~V~El~~~L~~~g~~V~faIHPV-AGRmPGHmNVLLAEA~VpYd~v~emdeiN 115 (207)
T 1djl_A 43 REANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPV-AGRMPGQLNVLLAEAGVPYDIVLEMDEIN 115 (207)
T ss_dssp HHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT-CSSSTTHHHHHHHHTTCCGGGEEEHHHHG
T ss_pred HCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-HHCCCCHHHHHEEECCCCHHHHHCHHHHC
T ss_conf 56985999868279999888999999999997799699985063-10164305330100489889972746415
No 218
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas}
Probab=24.94 E-value=33 Score=14.32 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=31.3
Q ss_pred EEEEECCCHH-HHHHHHHHHCCCCEEE----EECCCCCCH-HHHHHHHCCCCCCC
Q ss_conf 8998223125-7889998515871787----631564201-10013310373341
Q gi|254781011|r 80 IIAGGETAGI-PFATLLAERLNLPMIY----VRKKSKKHG-QKSQIEGHLFKGAR 128 (228)
Q Consensus 80 ~I~G~a~~Gi-p~a~~iA~~l~~p~~~----vRK~~K~hG-~~~~iEG~~~~g~~ 128 (228)
+|+|+|..|= ..|..+|.+++++.+- .|++.+... .++.+...+..|+.
T Consensus 4 vi~GpPGSGK~Tqa~~La~~~g~~~is~gdllR~~i~~~t~~g~~~~~~~~~g~l 58 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDL 58 (223)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCC
T ss_pred EEECCCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf 9988999987999999999979857878999999987299301677899876888
No 219
>3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=24.68 E-value=32 Score=14.40 Aligned_cols=64 Identities=6% Similarity=-0.139 Sum_probs=26.3
Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEE--CCHHHHHHH
Q ss_conf 1440878873223699999999865987856888874176324899999779809996--329999999
Q gi|254781011|r 128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYL--ATWNDILTI 194 (228)
Q Consensus 128 ~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl--~t~~~il~~ 194 (228)
.++++|+.+-.|-.-++.++.+++.- .+ -++.+..++..+. ..+.-+.|+.-|=. ++.++|...
T Consensus 56 dlvi~D~~mp~~~dG~~l~~~lr~~~-~~-piI~lt~~~~~~~-~~~a~~~Ga~~yl~KP~~~~~L~~~ 121 (140)
T 3cg0_A 56 DIALVDIMLCGALDGVETAARLAAGC-NL-PIIFITSSQDVET-FQRAKRVNPFGYLAKPVAADTLHRS 121 (140)
T ss_dssp SEEEEESSCCSSSCHHHHHHHHHHHS-CC-CEEEEECCCCHHH-HHHHHTTCCSEEEEESCCHHHHHHH
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHCC-CC-CEEEEECCCCHHH-HHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 88999767876798999999998579-99-6899966899999-9999987999899798999999999
No 220
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=24.51 E-value=34 Score=14.27 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=20.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 66678998223125788999851587178763
Q gi|254781011|r 76 ESIDIIAGGETAGIPFATLLAERLNLPMIYVR 107 (228)
Q Consensus 76 ~~~d~I~G~a~~Gip~a~~iA~~l~~p~~~vR 107 (228)
.++|.+++.-..-.+.+...|..+++|.++..
T Consensus 95 ~~~~~i~~~~~~~~~~~~~~a~~~~ip~~~~~ 126 (364)
T 1f0k_A 95 YKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 126 (364)
T ss_dssp HCCSEEEECSSTTHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCEEEEE
T ss_conf 47777998467556869999753588789985
No 221
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=24.49 E-value=34 Score=14.26 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHCCCE
Q ss_conf 999999999865976
Q gi|254781011|r 12 IAELVAKMLFEIKAV 26 (228)
Q Consensus 12 ~~~~~a~~L~~~~ai 26 (228)
+++.+++.|.+.|.-
T Consensus 5 ~a~~i~~~L~~~Gv~ 19 (549)
T 3eya_A 5 VAAYIAKTLESAGVK 19 (549)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999987999
No 222
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.20 E-value=22 Score=15.49 Aligned_cols=35 Identities=17% Similarity=0.445 Sum_probs=31.8
Q ss_pred CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 37334144087887322369999999986598785
Q gi|254781011|r 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 123 ~~~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~ 157 (228)
+..|++++=|++.-..+.+..+++++|++.|-.|.
T Consensus 79 L~~GD~Il~Ing~~v~~~~~~e~v~~i~~~g~~v~ 113 (126)
T 2yuy_A 79 LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLE 113 (126)
T ss_dssp CCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEE
T ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 98899999999999889999999999877999799
No 223
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A
Probab=23.66 E-value=35 Score=14.16 Aligned_cols=53 Identities=13% Similarity=-0.098 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEE--ECCHHHHHHH
Q ss_conf 2369999999986598785688887417632489999977980999--6329999999
Q gi|254781011|r 139 GNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHY--LATWNDILTI 194 (228)
Q Consensus 139 G~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~s--l~t~~~il~~ 194 (228)
|.+-++.++.+++..-. .++++..++. .....+.-+.|..-|= =++.++|++.
T Consensus 58 ~~~G~e~~~~~r~~~~~--~ii~lt~~~~-~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ 112 (120)
T 3f6p_A 58 NKDGVEVCREVRKKYDM--PIIMLTAKDS-EIDKVIGLEIGADDYVTKPFSTRELLAR 112 (120)
T ss_dssp TTHHHHHHHHHHTTCCS--CEEEEEESSC-HHHHHHHHHTTCCEEEEESCCHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCC--CEEEEECCCC-HHHHHHHHHCCCCEEEECCCCHHHHHHH
T ss_conf 99999999999816899--5899976799-9999999975999899799999999999
No 224
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 1zpd_A*
Probab=23.35 E-value=35 Score=14.12 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHCCCEE
Q ss_conf 9999999998659768
Q gi|254781011|r 12 IAELVAKMLFEIKAVN 27 (228)
Q Consensus 12 ~~~~~a~~L~~~~ai~ 27 (228)
.++.+++.|.+.|.-.
T Consensus 5 ~~~~l~~~L~~~Gv~~ 20 (568)
T 2wvg_A 5 VGTYLAERLVQIGLKH 20 (568)
T ss_dssp HHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHCCCCE
T ss_conf 9999999999879999
No 225
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=22.71 E-value=35 Score=14.12 Aligned_cols=25 Identities=8% Similarity=0.220 Sum_probs=13.0
Q ss_pred CEEEHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1440878873223699999999865
Q gi|254781011|r 128 RVLVIEDLVTLGNSMFEFVKVIRDS 152 (228)
Q Consensus 128 ~vliVDDviTtG~S~~~~i~~l~~~ 152 (228)
.++++|.-+-.|.+-.+.++.+|+.
T Consensus 51 dliilD~~lp~~~~G~~l~~~ir~~ 75 (127)
T 2gkg_A 51 DLVVLAVDLSAGQNGYLICGKLKKD 75 (127)
T ss_dssp SEEEEESBCGGGCBHHHHHHHHHHS
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 9999975777688899999999838
No 226
>2j01_F 50S ribosomal protein L4; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.22.1.1 PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=22.62 E-value=26 Score=14.94 Aligned_cols=84 Identities=13% Similarity=0.138 Sum_probs=47.7
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCHHHH--HHHHHHCC-CC
Q ss_conf 3341440878873223699999999865987856888874176324899999779809996329999--99999888-99
Q gi|254781011|r 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI--LTIAEKLK-IF 201 (228)
Q Consensus 125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~~~i--l~~l~~~~-~I 201 (228)
...+++||||....=...-++++.|+..|..-...+.+++. .+ .-.++..|++-..+++.++| .+.+.... .|
T Consensus 119 ~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~l~~~~~vl~~~~--~e--n~~~s~rNi~~v~v~~~~~lnv~dlL~~~~lvi 194 (210)
T 2j01_F 119 REGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG--NE--LVRRAARNLPWVVTLAPEGLNVYDIVRTERLVM 194 (210)
T ss_dssp HTTCEEEECCCCCCSSCHHHHHHHHHHHTCCSSSCEEEECS--CH--HHHHHHTTCTTEEEECGGGCCHHHHHHSSEEEE
T ss_pred HHCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCC--HH--HHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEE
T ss_conf 30875772343335778689999999817656653010240--67--899998477997786338822999856996998
Q ss_pred CHHHHHHHHHH
Q ss_conf 98999999999
Q gi|254781011|r 202 NHDVLEEVRCF 212 (228)
Q Consensus 202 ~~~~~~~I~~~ 212 (228)
+++-++.+++.
T Consensus 195 t~~Al~~l~e~ 205 (210)
T 2j01_F 195 DLDAWEVFQNR 205 (210)
T ss_dssp EHHHHHHHHHT
T ss_pred EHHHHHHHHHH
T ss_conf 78999999999
No 227
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=22.56 E-value=37 Score=14.02 Aligned_cols=60 Identities=10% Similarity=-0.054 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEEEE-CC----CCHHHHHHHHHCCCEEEEECCHHHHHHHHHH
Q ss_conf 873223699999999865987856888874-17----6324899999779809996329999999998
Q gi|254781011|r 135 LVTLGNSMFEFVKVIRDSGGIIQDGIGLFF-YD----IFPEVPARFRENNIKLHYLATWNDILTIAEK 197 (228)
Q Consensus 135 viTtG~S~~~~i~~l~~~g~~V~~~~vii~-~~----~~~~~~~~l~~~gi~~~sl~t~~~il~~l~~ 197 (228)
|..--|-...++++.+-+|...++++|-+- .| +.+...+--++++++ +++++||+++-++
T Consensus 158 vl~R~GHTEaaVdL~~lAGl~P~avi~Eil~~dG~m~~~~~~~~fA~~~~l~---~isi~dli~yr~~ 222 (227)
T 1snn_A 158 VKNRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLI---YLSGEEIINYYLD 222 (227)
T ss_dssp GGTCCSHHHHHHHHHHHTTSCSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCC---EEEHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCC---EEEHHHHHHHHHH
T ss_conf 7447877999999999829986499999856998736889999999984997---9989999999998
No 228
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=22.52 E-value=37 Score=14.02 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHCCCEE
Q ss_conf 9999999998659768
Q gi|254781011|r 12 IAELVAKMLFEIKAVN 27 (228)
Q Consensus 12 ~~~~~a~~L~~~~ai~ 27 (228)
-++.+++.|.+.|.-.
T Consensus 7 ~~~~l~~~L~~~Gv~~ 22 (552)
T 1ovm_A 7 VADYLLDRLTDCGADH 22 (552)
T ss_dssp HHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHCCCCE
T ss_conf 9999999999879999
No 229
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=22.47 E-value=37 Score=14.01 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=17.1
Q ss_pred CCCCCCHHHH--HHHHHHHHHHCCC-EEEECCCCEEEECCCCC
Q ss_conf 8889897899--9999999986597-68207898673118726
Q gi|254781011|r 3 VNYFPQQNII--AELVAKMLFEIKA-VNFSPENPYHLTSGIVS 42 (228)
Q Consensus 3 ~~~~~~~~~~--~~~~a~~L~~~~a-i~~~~~g~F~L~SG~~S 42 (228)
...|||...+ .-.++++ .+.|. |.+ .+++.|..+
T Consensus 7 i~aHPDDe~lg~GGtiak~-~~~G~~V~v-----v~~T~G~~g 43 (227)
T 1uan_A 7 VAPHPDDGELGCGGTLARA-KAEGLSTGI-----LDLTRGEMG 43 (227)
T ss_dssp EESSTTHHHHHHHHHHHHH-HHTTCCEEE-----EEEECCTTT
T ss_pred EEECCCHHHHHHHHHHHHH-HHCCCEEEE-----EEEECCCCC
T ss_conf 9768874788799999999-986990999-----997389778
No 230
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Bacillus cereus atcc 14579}
Probab=22.45 E-value=15 Score=16.56 Aligned_cols=15 Identities=0% Similarity=-0.090 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999986597
Q gi|254781011|r 11 IIAELVAKMLFEIKA 25 (228)
Q Consensus 11 ~~~~~~a~~L~~~~a 25 (228)
+|.+-+++-|++.+.
T Consensus 12 ~mg~ai~~gl~~~~~ 26 (247)
T 3gt0_A 12 NMGMAMIGGMINKNI 26 (247)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999997799
No 231
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=22.34 E-value=37 Score=13.99 Aligned_cols=83 Identities=6% Similarity=-0.045 Sum_probs=38.3
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHH--HHHCCCEEEEECCHHHH--HHHHHHCC-
Q ss_conf 33414408788732236999999998659878568888741763248999--99779809996329999--99999888-
Q gi|254781011|r 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR--FRENNIKLHYLATWNDI--LTIAEKLK- 199 (228)
Q Consensus 125 ~g~~vliVDDviTtG~S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~--l~~~gi~~~sl~t~~~i--l~~l~~~~- 199 (228)
...+++||||.-.+....-.+...+...+..-..+++++.- +...++ +...|++-..+++.++| .+.+....
T Consensus 87 ~~~~l~Vvd~~~~~~~kTK~~~~~l~~~~~~~~~l~v~~~~---~~~~~nl~~s~rNi~~v~v~~~~~lNv~dlL~~~~l 163 (175)
T 2ftc_D 87 AQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTH---EEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTL 163 (175)
T ss_pred HCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCC---HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHCCCEE
T ss_conf 24986986023434578189999998630057403454153---188899999973658833643587339999669929
Q ss_pred CCCHHHHHHHH
Q ss_conf 99989999999
Q gi|254781011|r 200 IFNHDVLEEVR 210 (228)
Q Consensus 200 ~I~~~~~~~I~ 210 (228)
.|+++-++.|+
T Consensus 164 vit~~Al~~le 174 (175)
T 2ftc_D 164 VLTLPTVAFLE 174 (175)
T ss_pred EEEHHHHHHHH
T ss_conf 98689988843
No 232
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=22.28 E-value=18 Score=16.09 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHCCCEEE
Q ss_conf 69999999986598785
Q gi|254781011|r 141 SMFEFVKVIRDSGGIIQ 157 (228)
Q Consensus 141 S~~~~i~~l~~~g~~V~ 157 (228)
.+.++++.+.+.|++.+
T Consensus 166 ~~~~a~~~L~~~G~k~V 182 (291)
T 3mbh_A 166 ELKEYLRLLSDKGPQVV 182 (291)
T ss_dssp HHHHHHHHHHHTSCSEE
T ss_pred HHHHHHHHHHHHCCCEE
T ss_conf 99999998886188379
No 233
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=22.19 E-value=11 Score=17.43 Aligned_cols=62 Identities=11% Similarity=0.133 Sum_probs=38.4
Q ss_pred HHHHHHHCCCCEEEEECCCCCC-HHHHHHHHC-CCCCCCEEEHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8999851587178763156420-110013310-3733414408788732236999999998659
Q gi|254781011|r 92 ATLLAERLNLPMIYVRKKSKKH-GQKSQIEGH-LFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 (228)
Q Consensus 92 a~~iA~~l~~p~~~vRK~~K~h-G~~~~iEG~-~~~g~~vliVDDviTtG~S~~~~i~~l~~~g 153 (228)
|.++|..++++.--+++.-+.+ |...+.|-. ..++..+.++||-.++-.++..+++.+++..
T Consensus 285 Aia~a~~~Gi~~~~i~~~l~~f~gv~~R~e~v~~~~~~~i~vidDYAHnP~ai~a~l~~l~~~~ 348 (469)
T 1j6u_A 285 VIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVF 348 (469)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEETTTTEEEEEECCCSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 9999998299999999887504787884479986288883466404689899999999999765
No 234
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT}
Probab=22.03 E-value=37 Score=13.96 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=3.6
Q ss_pred CCHHHHHHHH
Q ss_conf 3125788999
Q gi|254781011|r 86 TAGIPFATLL 95 (228)
Q Consensus 86 ~~Gip~a~~i 95 (228)
+.|+-++..+
T Consensus 60 ~~G~el~~~l 69 (127)
T 3i42_A 60 TSGLALVKQL 69 (127)
T ss_dssp SBHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 8459999999
No 235
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosynthesis; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=22.03 E-value=37 Score=13.96 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=14.3
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 408788732236999999998659
Q gi|254781011|r 130 LVIEDLVTLGNSMFEFVKVIRDSG 153 (228)
Q Consensus 130 liVDDviTtG~S~~~~i~~l~~~g 153 (228)
.++|.|.|-||+..++++.|++.|
T Consensus 248 ~L~~~V~SPGGtT~~gl~~Le~~g 271 (322)
T 2izz_A 248 QLKDNVSSPGGATIHALHVLESGG 271 (322)
T ss_dssp HHHHHHCCTTSHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 999807898088999999999879
No 236
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.90A {Neisseria meningitidis MC58} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=21.52 E-value=35 Score=14.17 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=9.4
Q ss_pred CEEEEECCCHHHHHHHHHH
Q ss_conf 7899822312578899985
Q gi|254781011|r 79 DIIAGGETAGIPFATLLAE 97 (228)
Q Consensus 79 d~I~G~a~~Gip~a~~iA~ 97 (228)
..|+. -+.|+++...-..
T Consensus 82 ~~iIS-~~AGi~~~~l~~~ 99 (263)
T 1yqg_A 82 ALVLS-VAAGLSVGTLSRY 99 (263)
T ss_dssp CEEEE-CCTTCCHHHHHHH
T ss_pred CEEEE-ECCCCCHHHHHHH
T ss_conf 67998-0799877789987
No 237
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=20.87 E-value=39 Score=13.80 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=10.6
Q ss_pred ECCCHHHH-HHHHHHHCCCCEE
Q ss_conf 22312578-8999851587178
Q gi|254781011|r 84 GETAGIPF-ATLLAERLNLPMI 104 (228)
Q Consensus 84 ~a~~Gip~-a~~iA~~l~~p~~ 104 (228)
.+.|++-+ +..+|...+...+
T Consensus 148 Ga~g~vG~~a~qla~~~G~~Vi 169 (327)
T 1qor_A 148 AAAGGVGLIACQWAKALGAKLI 169 (327)
T ss_dssp STTBHHHHHHHHHHHHHTCEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEE
T ss_conf 9953999999999998599899
No 238
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=20.87 E-value=39 Score=13.80 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHCCCEEEEECCH
Q ss_conf 699999999865987856888874176324899999779809996329
Q gi|254781011|r 141 SMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATW 188 (228)
Q Consensus 141 S~~~~i~~l~~~g~~V~~~~vii~~~~~~~~~~~l~~~gi~~~sl~t~ 188 (228)
+....+++|+..|++=.+++.=...+..+...+.|++.|+++.+...+
T Consensus 133 ~~~Ai~~AL~~lgakrIallTPY~~~v~~~~~~~~~~~G~eV~~~~~l 180 (273)
T 2xed_A 133 SAGALVEGLRALDAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRAL 180 (273)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEE
T ss_conf 899999999964998579974797899999999999678236555530
No 239
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=20.69 E-value=40 Score=13.78 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEEEECC
Q ss_conf 369999999986598785688887417
Q gi|254781011|r 140 NSMFEFVKVIRDSGGIIQDGIGLFFYD 166 (228)
Q Consensus 140 ~S~~~~i~~l~~~g~~V~~~~vii~~~ 166 (228)
.+-.+.++.+|+.+..+- ++++-.++
T Consensus 64 ~dG~~~~~~ir~~~~~~p-iI~lt~~~ 89 (130)
T 3eod_A 64 MNGLKLLEHIRNRGDQTP-VLVISATE 89 (130)
T ss_dssp --CHHHHHHHHHTTCCCC-EEEEECCC
T ss_pred CCHHHHHHHHHHHCCCCC-EEEEECCC
T ss_conf 989999999996098998-99998999
No 240
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, structural genomics, PSI; 2.00A {Aquifex aeolicus VF5}
Probab=20.11 E-value=41 Score=13.70 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 9998999999999972997
Q gi|254781011|r 200 IFNHDVLEEVRCFLDNPMQ 218 (228)
Q Consensus 200 ~I~~~~~~~I~~~l~dP~~ 218 (228)
....++...+--||-+|..
T Consensus 234 ~g~pediA~~v~fL~S~~a 252 (285)
T 2p91_A 234 PITIEDVGDTAVFLCSDWA 252 (285)
T ss_dssp CCCHHHHHHHHHHHTSGGG
T ss_pred CCCHHHHHHHHHHHHCCHH
T ss_conf 8499999999999958132
No 241
>2p12_A Hypothetical protein DUF402; APC7392, beta-barrel, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 1.63A {Rhodococcus SP} SCOP: b.175.1.1
Probab=20.05 E-value=41 Score=13.69 Aligned_cols=42 Identities=10% Similarity=0.193 Sum_probs=32.6
Q ss_pred EEECCHHHHHHHHHHCCCCCHHHH-----------HHHHHHHHHHHHHHHHHCC
Q ss_conf 996329999999998889998999-----------9999999729977886098
Q gi|254781011|r 183 HYLATWNDILTIAEKLKIFNHDVL-----------EEVRCFLDNPMQWSKKNGG 225 (228)
Q Consensus 183 ~sl~t~~~il~~l~~~~~I~~~~~-----------~~I~~~l~dP~~W~~~~g~ 225 (228)
..+++.+|+.+ +.+.|.|++++. +.|..|..|+..|-+.+|=
T Consensus 117 ~~llD~DEL~~-A~~~GlIs~e~ae~Al~~a~~avegIa~~g~dl~~WLa~~g~ 169 (176)
T 2p12_A 117 TELLDVDELME-AHTTGLLDTATAEQAILTATTAIDGIAAHGHDLGRWLASIGM 169 (176)
T ss_dssp EEEECHHHHHH-HHHTTSSCHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHTTC
T ss_pred EEEECHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 59965999999-998699899999999999999999999847989999986799
No 242
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoreductase, structural genomics consortium; HET: NAP; 2.30A {Plasmodium falciparum 3D7}
Probab=20.02 E-value=41 Score=13.69 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHCCCE
Q ss_conf 9999999999865976
Q gi|254781011|r 11 IIAELVAKMLFEIKAV 26 (228)
Q Consensus 11 ~~~~~~a~~L~~~~ai 26 (228)
+|++-+++-|++.+.+
T Consensus 14 ~Mg~Ai~~gl~~~~~~ 29 (262)
T 2rcy_A 14 QMGSALAHGIANANII 29 (262)
T ss_dssp HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999977999
Done!