RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781011|ref|YP_003065424.1| orotate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(228 letters)
>gnl|CDD|179036 PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.
Length = 202
Score = 194 bits (496), Expect = 1e-50
Identities = 68/205 (33%), Positives = 105/205 (51%), Gaps = 8/205 (3%)
Query: 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLR 71
A + L EI A+ + L+SG SP Y DCRKL+S+ A +++ A+ +
Sbjct: 4 YAREFIEFLLEIGAL---LFGHFTLSSGRKSPYYFDCRKLLSYPEALALLGRFLAEAIKD 60
Query: 72 NIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLV 131
+ D++AG T GIP A +A L+LP I+VRK++K HG+ QIEG G RVLV
Sbjct: 61 S--GIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEGGQIEGRRLFGKRVLV 118
Query: 132 IEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191
+ED++T G S+ E V+ IR +G + + F + + L L T +D+
Sbjct: 119 VEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ--SAAQEVFADAGVPLISLITLDDL 176
Query: 192 LTIAEKLKIFNHDVLEEVRCFLDNP 216
L AE+ + + L V+ + N
Sbjct: 177 LEYAEEGPL-CKEGLPAVKAYRRNY 200
>gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase. The conserved
Lys (K) residue at position 101 of the seed alignment
has been proposed as the active site for the enzyme.
Length = 173
Score = 99.4 bits (248), Expect = 6e-22
Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 11/179 (6%)
Query: 18 KMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFES 77
++L E++A+ F + L+SG SP Y + + + ++I A + ++ F
Sbjct: 1 ELLLEVQALKF---GEFTLSSGRKSPYYFNIKLFNTGPELANLIARYAAAIIKSHLEF-- 55
Query: 78 IDIIAGGETAGIPFATLLAERLNLP-----MIYVRKKSKKHGQKSQIEGHLFKGARVLVI 132
D+IAG GIP AT ++ +L P + + RK++K HG+ IEG L +G +V+V+
Sbjct: 56 -DVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGNIEGELLEGDKVVVV 114
Query: 133 EDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191
ED++T G S+ E V++I+ +GG + I +E + + L T D+
Sbjct: 115 EDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVISLITLKDL 173
>gnl|CDD|180119 PRK05500, PRK05500, bifunctional orotidine 5'-phosphate
decarboxylase/orotate phosphoribosyltransferase protein;
Validated.
Length = 477
Score = 90.5 bits (225), Expect = 3e-19
Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 20/194 (10%)
Query: 3 VNYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIM 62
+N P Q++I +L ++I + F Y SG YID RK+IS + ++
Sbjct: 282 LNQHPHQDLILQL-----YDIGCLLFGE---YVQASGATFSYYIDLRKIISNPQLFHQVL 333
Query: 63 DLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH 122
A+ +L+N+ F D IAG +P AT LA L+ PMI+ RK+ K HG + IEG+
Sbjct: 334 SAYAE-ILKNLTF---DRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHGTRRLIEGN 389
Query: 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKL 182
G V+V++D++ G S+ E + ++ +G ++D + F D V + + + +
Sbjct: 390 FHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIV--VFIDHEQGVKDKLQSHGYQA 447
Query: 183 HYLATWNDILTIAE 196
+ +LTI+E
Sbjct: 448 Y------SVLTISE 455
>gnl|CDD|184340 PRK13809, PRK13809, orotate phosphoribosyltransferase; Provisional.
Length = 206
Score = 81.0 bits (200), Expect = 2e-16
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 11/198 (5%)
Query: 20 LFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESID 79
L++I A+ F L SG +P+Y+D R +IS I L + LR F S
Sbjct: 17 LYQIGAIKFGKFI---LASGEETPIYVDMRLVISSPEVLQTIATLIWR--LRP-SFNS-S 69
Query: 80 IIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQI--EGHLFKGARVLVIEDLVT 137
++ G + AT ++ + N+PM+ RK+ K I EG G LVI D+V+
Sbjct: 70 LLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVS 129
Query: 138 LGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEK 197
G S+ E + + G ++++ L F D IKL + T D++
Sbjct: 130 SGKSIIETAVALEEEGLVVRE--ALVFLDRQKGACQPLGPQGIKLSSVFTVPDLIKSLIS 187
Query: 198 LKIFNHDVLEEVRCFLDN 215
+ L +
Sbjct: 188 YGKLSSGDLTLANKIIKI 205
>gnl|CDD|184341 PRK13810, PRK13810, orotate phosphoribosyltransferase; Provisional.
Length = 187
Score = 80.7 bits (199), Expect = 3e-16
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 34 YHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFAT 93
+ L+SG S YID +K + L A+ I +D +AG E G+P AT
Sbjct: 34 FTLSSGKKSKYYIDIKK----ASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLAT 89
Query: 94 LLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153
++ LP++ VRK K +G S+ G L R++++ED+ T G S+ E ++V+R++G
Sbjct: 90 AVSLETGLPLLIVRKSVKDYGTGSRFVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAG 149
Query: 154 GIIQ 157
I+
Sbjct: 150 AYIK 153
>gnl|CDD|172342 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional.
Length = 170
Score = 65.6 bits (160), Expect = 1e-11
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 21/148 (14%)
Query: 16 VAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGF 75
+A++L KA+ F + L SG S YID + I T +L+ I
Sbjct: 5 IAELLISYKAIEFGD---FTLASGAKSRYYIDIKTAI------------THPALLKEIAA 49
Query: 76 E-----SIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVL 130
E D++AG G+P A ++ P +RK++K HG+ I G + KG RVL
Sbjct: 50 EVAKRYDFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDHGKAGLIIGDV-KGKRVL 108
Query: 131 VIEDLVTLGNSMFEFVKVIRDSGGIIQD 158
++ED+ T G S ++ +R +G ++ D
Sbjct: 109 LVEDVTTSGGSALYGIEQLRAAGAVVDD 136
>gnl|CDD|184342 PRK13812, PRK13812, orotate phosphoribosyltransferase; Provisional.
Length = 176
Score = 62.1 bits (151), Expect = 1e-10
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRN 72
+L+A L + AV F + L+ G S Y+D + +I + A +
Sbjct: 4 DDLIAA-LRDADAVQFGE---FELSHGGTSEYYVDKYLFETDPDCLRLIAEAFADRI--- 56
Query: 73 IGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVI 132
+ +AG +P + + +P + RK++K++G ++IEG L +G V+V+
Sbjct: 57 ---DEDTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKEYGTGNRIEGRLDEGEEVVVL 113
Query: 133 EDLVTLGNSMFEFVKVIRDSGGII 156
ED+ T G S + V+ +R++G +
Sbjct: 114 EDIATTGQSAVDAVEALREAGATV 137
>gnl|CDD|162319 TIGR01367, pyrE_Therm, orotate phosphoribosyltransferase, Thermus
family. This model represents a distinct clade of
orotate phosphoribosyltransferases. Members include the
experimentally determined example from Thermus aquaticus
and additional examples from Caulobacter crescentus,
Helicobacter pylori, Mesorhizobium loti, and related
species.
Length = 187
Score = 60.6 bits (147), Expect = 3e-10
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 31 ENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIP 90
E + L+SG SP ++ L+ A + A+ +L +D I G G+
Sbjct: 14 EGHFLLSSGKHSPYFLQSATLLEHPEALMELGGELAQKILDYGL--KVDFIVGPAMGGVI 71
Query: 91 FATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIR 150
+A +L++ I+ ++ G K + + G + + +ED+VT G S+ E ++ I
Sbjct: 72 LGYEVARQLSVRSIFAEREGG--GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIE 129
Query: 151 DSGGII 156
GG +
Sbjct: 130 GQGGQV 135
>gnl|CDD|179404 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein;
Provisional.
Length = 200
Score = 58.7 bits (143), Expect = 1e-09
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 15/104 (14%)
Query: 59 SMIM-DLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM-IYVRKKSKKHGQK 116
+ M D+ K E +D++ G +G+P ATL+A+ L + IY KK HG+
Sbjct: 72 ASAMADMLEKED------EEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKK-WDHGEG 124
Query: 117 SQIEGHL---F---KGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154
+ G F +G R ++++D++T G +M E ++ +++ GG
Sbjct: 125 EKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGG 168
>gnl|CDD|179411 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.
Length = 175
Score = 50.1 bits (121), Expect = 4e-07
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ-----------KSQIEGH---L 123
ID I G E G F LA +L + + VRK K + +E H +
Sbjct: 52 IDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAI 111
Query: 124 FKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158
G RVL+++DL+ G ++ +K++ G +
Sbjct: 112 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVG 146
>gnl|CDD|181466 PRK08558, PRK08558, adenine phosphoribosyltransferase; Provisional.
Length = 238
Score = 49.6 bits (119), Expect = 7e-07
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 21/122 (17%)
Query: 60 MIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQI 119
+ L A V +D++ T GIP A +A ++Y KKSK+ G +
Sbjct: 94 SFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYA-KKSKETGVEKFY 152
Query: 120 E-----------------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL 162
E L KG RVL+++D++ G + + + R +G + +G+
Sbjct: 153 EEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADV---VGV 209
Query: 163 FF 164
FF
Sbjct: 210 FF 211
>gnl|CDD|162198 TIGR01090, apt, adenine phosphoribosyltransferase. A phylogenetic
analysis suggested omitting the bi-directional best hit
homologs from the spirochetes from the seed for this
model and making only tentative predictions of adenine
phosphoribosyltransferase function for this lineage.
Length = 169
Score = 46.5 bits (111), Expect = 5e-06
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ-----------KSQIEGH---L 123
ID I G E G F LA +L + + VRK K G+ K Q+E H +
Sbjct: 47 IDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAI 106
Query: 124 FKGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154
G RVL+++DL+ G + ++IR GG
Sbjct: 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGG 137
>gnl|CDD|183595 PRK12560, PRK12560, adenine phosphoribosyltransferase; Provisional.
Length = 187
Score = 46.3 bits (110), Expect = 7e-06
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 58 RSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKS 117
R ++ TAK +++ I ID I E G P AT ++ P+ R + +
Sbjct: 33 RPKVLKETAKEIIKYIDK-DIDKIVTEEDKGAPLATPVSLLSGKPLAMARWYPYSLSELN 91
Query: 118 QI---------EGHLF-----KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158
EG ++ KG RV +I+D ++ G ++ +K I +SGGI+ D
Sbjct: 92 YNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSD 146
>gnl|CDD|180928 PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional.
Length = 178
Score = 45.0 bits (107), Expect = 2e-05
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 19/100 (19%)
Query: 76 ESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK----------------KHGQKSQI 119
+D++ ET GIP A L+ RL P + RK K Q +
Sbjct: 51 TEVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVL 110
Query: 120 EG---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156
+G KG RV +++D+V+ G ++ +++ +GG +
Sbjct: 111 DGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQV 150
>gnl|CDD|130805 TIGR01744, XPRTase, xanthine phosphoribosyltransferase. This model
represent a xanthine-specific phosphoribosyltransferase
of Bacillus subtilis and closely related proteins from
other species, mostly from other Gram-positive bacteria.
The adjacent gene is a xanthine transporter; B. subtilis
can import xanthine for the purine salvage pathway or
for catabolism to obtain nitrogen.
Length = 191
Score = 41.7 bits (98), Expect = 2e-04
Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 19/146 (13%)
Query: 59 SMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKK--------- 109
+M + R + I I E +GI A + +L +P+++ RKK
Sbjct: 32 PKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARKKKPLTLTDNL 91
Query: 110 ------SKKHGQKSQI---EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI 160
S S + L RVL+I+D + G + V + + +G I GI
Sbjct: 92 LTASVHSFTKQTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIA-GI 150
Query: 161 GLFFYDIFPEVPARFRENNIKLHYLA 186
G+ F E ++ LA
Sbjct: 151 GIVIEKSFQNGRQELVELGYRVESLA 176
>gnl|CDD|180357 PRK06031, PRK06031, phosphoribosyltransferase; Provisional.
Length = 233
Score = 38.2 bits (89), Expect = 0.002
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 22/106 (20%)
Query: 77 SIDIIAGGETAGIPFATLLAERLN----LPMIYVRK--------------KSKKHGQKSQ 118
D++AG T G+ A +A +L +P+ RK + G++
Sbjct: 84 DPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLY 143
Query: 119 IEGH---LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG 161
I+ L +G RV +I+D+++ G S+ ++++ + GI GIG
Sbjct: 144 IDPRMLPLLEGRRVALIDDVISSGASIVAGLRLL-AACGIEPAGIG 188
>gnl|CDD|130804 TIGR01743, purR_Bsub, pur operon repressor, Bacillus subtilis type.
This model represents the puring operon repressor PurR
of low-GC Gram-positive bacteria. This homodimeric
repressor contains a large region homologous to
phosphoribosyltransferases and is inhibited by
5-phosphoribosyl 1-pyrophosphate.
Length = 268
Score = 36.7 bits (85), Expect = 0.005
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK-----------KHGQKSQIEG----- 121
ID + T GIP A +A LN+P++ VRK SK G ++I+
Sbjct: 129 IDAVMTVATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAK 188
Query: 122 -HLFKGARVLVIEDLVTLG---NSMFEFVK 147
L G++VL+I+D + G N M +
Sbjct: 189 RSLKTGSKVLIIDDFMKAGGTINGMINLLD 218
>gnl|CDD|181702 PRK09213, PRK09213, pur operon repressor; Provisional.
Length = 271
Score = 35.5 bits (83), Expect = 0.011
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 25/92 (27%)
Query: 68 TVLRNIG------F--ESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK-------- 111
++LR IG F + ID + ET GIP A +A LN+P + VR+ SK
Sbjct: 113 SILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVS 172
Query: 112 ---KHGQKSQIEG------HLFKGARVLVIED 134
G +IE L +G+RVL+++D
Sbjct: 173 INYVSGSSKRIETMSLSKRSLKEGSRVLIVDD 204
>gnl|CDD|185481 PTZ00149, PTZ00149, hypoxanthine phosphoribosyltransferase;
Provisional.
Length = 241
Score = 35.1 bits (81), Expect = 0.013
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 36/152 (23%)
Query: 30 PENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAK------TVLRNIGFESIDIIAG 83
++ Y L S ++ P Y + I + +I D K V N + I+ G
Sbjct: 34 DDDFYDLDSFLIPPHYKNYLTKI--LLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKG 91
Query: 84 GETAGIPFATLLAERLNLPMI----------------YVRKKSKKHGQ---KSQIEG--- 121
F + L + LN I YVR KS + + K +I
Sbjct: 92 SRG----FFSALVDYLN--RIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDL 145
Query: 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153
K VL++ED++ GN++ +F + ++
Sbjct: 146 SCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFE 177
>gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase.
Length = 187
Score = 35.0 bits (81), Expect = 0.017
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ-----------KSQIEGHL--- 123
I ++AG E G F +A + + +RK K G+ +E H+
Sbjct: 63 ISVVAGIEARGFIFGPPIALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAV 122
Query: 124 FKGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154
G R LVI+DL+ G ++ + ++ +G
Sbjct: 123 EPGERALVIDDLIATGGTLCAAINLLERAGA 153
>gnl|CDD|181705 PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.
Length = 189
Score = 34.0 bits (79), Expect = 0.033
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 19/95 (20%)
Query: 85 ETAGIPFATLLAERLNLPMIYVRKK-----------------SKKHGQKSQIEG-HLFKG 126
E +GI A + A L +P+++ +KK +K+ + L +G
Sbjct: 58 EASGIAPAVMAALALGVPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEG 117
Query: 127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG 161
RVL+I+D + G + + +I +G + GIG
Sbjct: 118 DRVLIIDDFLANGQAALGLIDIIEQAGAKVA-GIG 151
>gnl|CDD|178059 PLN02440, PLN02440, amidophosphoribosyltransferase.
Length = 479
Score = 33.1 bits (76), Expect = 0.055
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153
+ +G RV+V++D + G + + V+++R++G
Sbjct: 336 SVLEGKRVVVVDDSIVRGTTSSKIVRMLREAG 367
>gnl|CDD|162218 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name:
glutamine phosphoribosylpyrophosphate (PRPP)
amidotransferase.
Length = 442
Score = 31.8 bits (73), Expect = 0.16
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 29/128 (22%)
Query: 52 ISFVRARSMIMDLTAKTVLRNIGFE-------SIDIIAGGETAGIPFATLLAERLNLP-- 102
+ F R S+I ++ + +G + D++ +G A A+ +P
Sbjct: 241 VYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDSGRSAALGFAQASGIPYR 300
Query: 103 --MI---YV-----------RKKSKKHGQK-SQIEGHLFKGARVLVIEDLVTLGNSMFEF 145
+I YV R+ S + K + I +F+G RV++++D + G + +
Sbjct: 301 EGLIKNRYVGRTFIMPTQELRELSVR--LKLNPIR-EVFRGKRVVLVDDSIVRGTTSRQI 357
Query: 146 VKVIRDSG 153
VK++RD+G
Sbjct: 358 VKMLRDAG 365
>gnl|CDD|180883 PRK07206, PRK07206, hypothetical protein; Provisional.
Length = 416
Score = 30.0 bits (68), Expect = 0.56
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 2 IVNYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMI 61
IV+ F +A K E AV S + + + +I+ V I
Sbjct: 7 IVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIE-------VIINGDI 59
Query: 62 MDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLP 102
DL LR +G E+I IAG E+ G+ A LAE L
Sbjct: 60 DDLVEF--LRKLGPEAI--IAGAES-GVELADRLAEILTPQ 95
>gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional.
Length = 442
Score = 29.4 bits (66), Expect = 0.71
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSG 153
G RV++++D + G +M VK++RD+G
Sbjct: 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAG 361
>gnl|CDD|161762 TIGR00201, comF, comF family protein. This protein is found in
species that do (Bacillus subtilis, Haemophilus
influenzae) or do not (E. coli, Borrelia burgdorferi)
have described systems for natural transformation with
exogenous DNA. It is involved in competence for
transformation in Bacillus subtilis.
Length = 190
Score = 28.6 bits (64), Expect = 1.3
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 92 ATLLAERL-----NLPMIYVRKKSKKHGQKS------------QIEGHLFKGARVLVIED 134
A LLA+ L N I +R ++ + ++ + F+G +++++D
Sbjct: 101 ADLLAQCLSRWLFNYHNIVIRLNNETQSKLKATLRFLNLENAFDLKNNSFQGRNIVLVDD 160
Query: 135 LVTLGNSMFEFVKVIRDSG 153
+VT G ++ E +++ + G
Sbjct: 161 VVTTGATLHEIARLLLELG 179
>gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional.
Length = 471
Score = 28.1 bits (62), Expect = 2.0
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 25/127 (19%)
Query: 52 ISFVRARSMIMDLTAKTVLRNIG-------FESIDIIAGGETAGIPFATLLAERLNLP-- 102
I F R S I + +N+G D++ G + I A AE +P
Sbjct: 251 IYFARPDSNIAGINVHAARKNMGKRLAAEAPIEADVVTGVPDSSISAAIGYAEATGIPYE 310
Query: 103 --MIYVRKKSKKHGQKSQ-------------IEGHLFKGARVLVIEDLVTLGNSMFEFVK 147
+I R + Q SQ + G + +G RV++I+D + G + V+
Sbjct: 311 LGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRG-VVEGKRVVMIDDSIVRGTTSKRIVR 369
Query: 148 VIRDSGG 154
++R++G
Sbjct: 370 MLREAGA 376
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing).
Length = 578
Score = 28.2 bits (63), Expect = 2.0
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 104 IY----VRKKSKKH----GQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155
IY +R+K K H G ++ HL++ E+ V + + MF FV +
Sbjct: 78 IYNHKELREKLKLHKFRTGSDCEVIAHLYE----EHGEEFVDMLDGMFSFVLLDTRDNSF 133
Query: 156 I--QDGIG 161
I +D IG
Sbjct: 134 IAARDHIG 141
>gnl|CDD|149187 pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members
of this family are alpha-1,2-mannosidases, enzymes which
remove alpha-1,2-linked mannose residues from
Man(9)(GlcNAc)(2) by hydrolysis. They are critical for
the maturation of N-linked oligosaccharides and
ER-associated degradation.
Length = 501
Score = 27.5 bits (62), Expect = 2.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 21 FEIKAVNFSPENPY 34
F I A N SPEN Y
Sbjct: 453 FTITAPNNSPENIY 466
>gnl|CDD|102351 PRK06388, PRK06388, amidophosphoribosyltransferase; Provisional.
Length = 474
Score = 27.6 bits (61), Expect = 2.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 126 GARVLVIEDLVTLGNSMFEFVKVIRDSG 153
G R+++++D + GN+M VK++R G
Sbjct: 356 GKRIVLVDDSIVRGNTMRFIVKIMRKYG 383
>gnl|CDD|180880 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase;
Validated.
Length = 442
Score = 27.6 bits (62), Expect = 2.9
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 12/48 (25%)
Query: 139 GNSMFEFVKV----IRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKL 182
+ MFE KV + +GG G +PE PA ENN K+
Sbjct: 315 TSDMFESYKVANFKHKHAGGDPNVG--------WPESPAMLFENNNKI 354
>gnl|CDD|181757 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 27.4 bits (62), Expect = 3.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 63 DLTAKTVLRNIG 74
DLT TVLRN+G
Sbjct: 336 DLTDSTVLRNLG 347
>gnl|CDD|149401 pfam08328, ASL_C, Adenylosuccinate lyase C-terminal. This domain
is found at the C-terminus of adenylosuccinate
lyase(ASL; PurB in E. coli). It has been identified in
bacteria, eukaryotes and archaea and is found together
with the lyase domain pfam00206. ASL catalyses the
cleavage of succinylaminoimidazole carboxamide ribotide
to aminoimidazole carboxamide ribotide and fumarate and
the cleavage of adenylosuccinate to adenylate and
fumarate.
Length = 115
Score = 27.4 bits (62), Expect = 3.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 63 DLTAKTVLRNIG 74
DLT TVLRN+G
Sbjct: 6 DLTDSTVLRNLG 17
>gnl|CDD|177882 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase.
Length = 189
Score = 27.3 bits (61), Expect = 3.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSG 153
KG VL++ED+V GN++ V + G
Sbjct: 96 KGKHVLLVEDIVDTGNTLSALVAHLEAKG 124
>gnl|CDD|163028 TIGR02812, fadR_gamma, fatty acid metabolism transcriptional
regulator FadR. Members of this family are FadR, a
transcriptional regulator of fatty acid metabolism,
including both biosynthesis and beta-oxidation. It is
found exclusively in a subset of Gammaproteobacteria,
with strictly one copy per genome. It has an N-terminal
DNA-binding domain and a less well conserved C-terminal
long chain acyl-CoA-binding domain. FadR from this
family heterologously expressed in Escherichia coli show
differences in regulatory response and fatty acid
binding profiles. The family is nevertheless designated
equivalog, as all member proteins have at least
nominally the same function.
Length = 235
Score = 26.9 bits (60), Expect = 4.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 92 ATLLAERLNLPMIYVRKKSKKHGQKSQ 118
LL+ R N+ IY+R K + +K+
Sbjct: 98 DNLLSARTNISAIYIRYAFKNNPEKAL 124
>gnl|CDD|180940 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.
Length = 500
Score = 26.6 bits (59), Expect = 5.3
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 126 GARVLVIEDLVTLGNSMFEFVKVIRDSG 153
G R+++++D + G + + VK +RD+G
Sbjct: 377 GKRIIIVDDSIVRGTTSRKIVKALRDAG 404
>gnl|CDD|130270 TIGR01203, HGPRTase, hypoxanthine phosphoribosyltransferase.
Sequence differences as small as a single residue can
affect whether members of this family act on
hypoxanthine and guanine or hypoxanthine only. The
designation of this model as equivalog reflects
hypoxanthine specificity and does not reflect whether or
not guanine can replace hypoxanthine.
Length = 166
Score = 26.4 bits (59), Expect = 5.5
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 88 GIPFATLLAERLNLPMI--YVRKKSKKHGQKSQIE-------GHLFKGARVLVIEDLVTL 138
PF L + +P+ ++ S +G +S + KG VL++ED+V
Sbjct: 37 SFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDT 96
Query: 139 GNSMFEFVKVIR 150
G ++ + +++
Sbjct: 97 GLTLQYLLDLLK 108
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate
acyltransferase; Provisional.
Length = 245
Score = 26.5 bits (58), Expect = 6.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 8/31 (25%)
Query: 28 FSPENPYHLTS-----GIVSPLY---IDCRK 50
FSP NP H+ + G ++PL+ ++CRK
Sbjct: 27 FSPRNPKHVATFGHMFGRLAPLFGLKVECRK 57
>gnl|CDD|185060 PRK15105, PRK15105, peptidoglycan synthase FtsI; Provisional.
Length = 578
Score = 26.3 bits (58), Expect = 6.4
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 97 ERLNLPMIYVRKKSKKHGQKSQIEGHL 123
++L LP I++R++S+++ ++ HL
Sbjct: 151 KKLKLPGIHLREESRRYYPSGEVTAHL 177
>gnl|CDD|178382 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 25.9 bits (57), Expect = 7.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 80 IIAGGETAGIPFATLLAERLNL 101
I+ GG TAG P A L++ ++
Sbjct: 59 IVVGGGTAGCPLAATLSQNFSV 80
>gnl|CDD|184996 PRK15036, PRK15036, hydroxyisourate hydrolase; Provisional.
Length = 137
Score = 26.1 bits (57), Expect = 7.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 168 FPEVPARFRENNIKLHY 184
FPE+P F N + HY
Sbjct: 104 FPEIPVEFHINKVNEHY 120
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.325 0.142 0.418
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,858,845
Number of extensions: 251852
Number of successful extensions: 705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 684
Number of HSP's successfully gapped: 54
Length of query: 228
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 138
Effective length of database: 4,049,753
Effective search space: 558865914
Effective search space used: 558865914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.0 bits)