RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (228 letters) >gnl|CDD|179036 PRK00455, pyrE, orotate phosphoribosyltransferase; Validated. Length = 202 Score = 194 bits (496), Expect = 1e-50 Identities = 68/205 (33%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLR 71 A + L EI A+ + L+SG SP Y DCRKL+S+ A +++ A+ + Sbjct: 4 YAREFIEFLLEIGAL---LFGHFTLSSGRKSPYYFDCRKLLSYPEALALLGRFLAEAIKD 60 Query: 72 NIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLV 131 + D++AG T GIP A +A L+LP I+VRK++K HG+ QIEG G RVLV Sbjct: 61 S--GIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEGGQIEGRRLFGKRVLV 118 Query: 132 IEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191 +ED++T G S+ E V+ IR +G + + F + + L L T +D+ Sbjct: 119 VEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQ--SAAQEVFADAGVPLISLITLDDL 176 Query: 192 LTIAEKLKIFNHDVLEEVRCFLDNP 216 L AE+ + + L V+ + N Sbjct: 177 LEYAEEGPL-CKEGLPAVKAYRRNY 200 >gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme. Length = 173 Score = 99.4 bits (248), Expect = 6e-22 Identities = 51/179 (28%), Positives = 91/179 (50%), Gaps = 11/179 (6%) Query: 18 KMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFES 77 ++L E++A+ F + L+SG SP Y + + + ++I A + ++ F Sbjct: 1 ELLLEVQALKF---GEFTLSSGRKSPYYFNIKLFNTGPELANLIARYAAAIIKSHLEF-- 55 Query: 78 IDIIAGGETAGIPFATLLAERLNLP-----MIYVRKKSKKHGQKSQIEGHLFKGARVLVI 132 D+IAG GIP AT ++ +L P + + RK++K HG+ IEG L +G +V+V+ Sbjct: 56 -DVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGNIEGELLEGDKVVVV 114 Query: 133 EDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191 ED++T G S+ E V++I+ +GG + I +E + + L T D+ Sbjct: 115 EDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPVISLITLKDL 173 >gnl|CDD|180119 PRK05500, PRK05500, bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated. Length = 477 Score = 90.5 bits (225), Expect = 3e-19 Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 20/194 (10%) Query: 3 VNYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIM 62 +N P Q++I +L ++I + F Y SG YID RK+IS + ++ Sbjct: 282 LNQHPHQDLILQL-----YDIGCLLFGE---YVQASGATFSYYIDLRKIISNPQLFHQVL 333 Query: 63 DLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH 122 A+ +L+N+ F D IAG +P AT LA L+ PMI+ RK+ K HG + IEG+ Sbjct: 334 SAYAE-ILKNLTF---DRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHGTRRLIEGN 389 Query: 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKL 182 G V+V++D++ G S+ E + ++ +G ++D + F D V + + + + Sbjct: 390 FHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIV--VFIDHEQGVKDKLQSHGYQA 447 Query: 183 HYLATWNDILTIAE 196 + +LTI+E Sbjct: 448 Y------SVLTISE 455 >gnl|CDD|184340 PRK13809, PRK13809, orotate phosphoribosyltransferase; Provisional. Length = 206 Score = 81.0 bits (200), Expect = 2e-16 Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 11/198 (5%) Query: 20 LFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESID 79 L++I A+ F L SG +P+Y+D R +IS I L + LR F S Sbjct: 17 LYQIGAIKFGKFI---LASGEETPIYVDMRLVISSPEVLQTIATLIWR--LRP-SFNS-S 69 Query: 80 IIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQI--EGHLFKGARVLVIEDLVT 137 ++ G + AT ++ + N+PM+ RK+ K I EG G LVI D+V+ Sbjct: 70 LLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVS 129 Query: 138 LGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEK 197 G S+ E + + G ++++ L F D IKL + T D++ Sbjct: 130 SGKSIIETAVALEEEGLVVRE--ALVFLDRQKGACQPLGPQGIKLSSVFTVPDLIKSLIS 187 Query: 198 LKIFNHDVLEEVRCFLDN 215 + L + Sbjct: 188 YGKLSSGDLTLANKIIKI 205 >gnl|CDD|184341 PRK13810, PRK13810, orotate phosphoribosyltransferase; Provisional. Length = 187 Score = 80.7 bits (199), Expect = 3e-16 Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 4/124 (3%) Query: 34 YHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFAT 93 + L+SG S YID +K + L A+ I +D +AG E G+P AT Sbjct: 34 FTLSSGKKSKYYIDIKK----ASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLAT 89 Query: 94 LLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 ++ LP++ VRK K +G S+ G L R++++ED+ T G S+ E ++V+R++G Sbjct: 90 AVSLETGLPLLIVRKSVKDYGTGSRFVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAG 149 Query: 154 GIIQ 157 I+ Sbjct: 150 AYIK 153 >gnl|CDD|172342 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional. Length = 170 Score = 65.6 bits (160), Expect = 1e-11 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 21/148 (14%) Query: 16 VAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGF 75 +A++L KA+ F + L SG S YID + I T +L+ I Sbjct: 5 IAELLISYKAIEFGD---FTLASGAKSRYYIDIKTAI------------THPALLKEIAA 49 Query: 76 E-----SIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVL 130 E D++AG G+P A ++ P +RK++K HG+ I G + KG RVL Sbjct: 50 EVAKRYDFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDHGKAGLIIGDV-KGKRVL 108 Query: 131 VIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 ++ED+ T G S ++ +R +G ++ D Sbjct: 109 LVEDVTTSGGSALYGIEQLRAAGAVVDD 136 >gnl|CDD|184342 PRK13812, PRK13812, orotate phosphoribosyltransferase; Provisional. Length = 176 Score = 62.1 bits (151), Expect = 1e-10 Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 10/144 (6%) Query: 13 AELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRN 72 +L+A L + AV F + L+ G S Y+D + +I + A + Sbjct: 4 DDLIAA-LRDADAVQFGE---FELSHGGTSEYYVDKYLFETDPDCLRLIAEAFADRI--- 56 Query: 73 IGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVI 132 + +AG +P + + +P + RK++K++G ++IEG L +G V+V+ Sbjct: 57 ---DEDTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKEYGTGNRIEGRLDEGEEVVVL 113 Query: 133 EDLVTLGNSMFEFVKVIRDSGGII 156 ED+ T G S + V+ +R++G + Sbjct: 114 EDIATTGQSAVDAVEALREAGATV 137 >gnl|CDD|162319 TIGR01367, pyrE_Therm, orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species. Length = 187 Score = 60.6 bits (147), Expect = 3e-10 Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 31 ENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIP 90 E + L+SG SP ++ L+ A + A+ +L +D I G G+ Sbjct: 14 EGHFLLSSGKHSPYFLQSATLLEHPEALMELGGELAQKILDYGL--KVDFIVGPAMGGVI 71 Query: 91 FATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIR 150 +A +L++ I+ ++ G K + + G + + +ED+VT G S+ E ++ I Sbjct: 72 LGYEVARQLSVRSIFAEREGG--GMKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIE 129 Query: 151 DSGGII 156 GG + Sbjct: 130 GQGGQV 135 >gnl|CDD|179404 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein; Provisional. Length = 200 Score = 58.7 bits (143), Expect = 1e-09 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 15/104 (14%) Query: 59 SMIM-DLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM-IYVRKKSKKHGQK 116 + M D+ K E +D++ G +G+P ATL+A+ L + IY KK HG+ Sbjct: 72 ASAMADMLEKED------EEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKK-WDHGEG 124 Query: 117 SQIEGHL---F---KGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154 + G F +G R ++++D++T G +M E ++ +++ GG Sbjct: 125 EKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYLKEHGG 168 >gnl|CDD|179411 PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional. Length = 175 Score = 50.1 bits (121), Expect = 4e-07 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 14/95 (14%) Query: 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ-----------KSQIEGH---L 123 ID I G E G F LA +L + + VRK K + +E H + Sbjct: 52 IDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAI 111 Query: 124 FKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 G RVL+++DL+ G ++ +K++ G + Sbjct: 112 KPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVG 146 >gnl|CDD|181466 PRK08558, PRK08558, adenine phosphoribosyltransferase; Provisional. Length = 238 Score = 49.6 bits (119), Expect = 7e-07 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 21/122 (17%) Query: 60 MIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQI 119 + L A V +D++ T GIP A +A ++Y KKSK+ G + Sbjct: 94 SFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYA-KKSKETGVEKFY 152 Query: 120 E-----------------GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL 162 E L KG RVL+++D++ G + + + R +G + +G+ Sbjct: 153 EEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADV---VGV 209 Query: 163 FF 164 FF Sbjct: 210 FF 211 >gnl|CDD|162198 TIGR01090, apt, adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage. Length = 169 Score = 46.5 bits (111), Expect = 5e-06 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 14/91 (15%) Query: 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ-----------KSQIEGH---L 123 ID I G E G F LA +L + + VRK K G+ K Q+E H + Sbjct: 47 IDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAI 106 Query: 124 FKGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154 G RVL+++DL+ G + ++IR GG Sbjct: 107 KPGQRVLIVDDLLATGGTAEATDELIRKLGG 137 >gnl|CDD|183595 PRK12560, PRK12560, adenine phosphoribosyltransferase; Provisional. Length = 187 Score = 46.3 bits (110), Expect = 7e-06 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 15/115 (13%) Query: 58 RSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKS 117 R ++ TAK +++ I ID I E G P AT ++ P+ R + + Sbjct: 33 RPKVLKETAKEIIKYIDK-DIDKIVTEEDKGAPLATPVSLLSGKPLAMARWYPYSLSELN 91 Query: 118 QI---------EGHLF-----KGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQD 158 EG ++ KG RV +I+D ++ G ++ +K I +SGGI+ D Sbjct: 92 YNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSD 146 >gnl|CDD|180928 PRK07322, PRK07322, adenine phosphoribosyltransferase; Provisional. Length = 178 Score = 45.0 bits (107), Expect = 2e-05 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 19/100 (19%) Query: 76 ESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK----------------KHGQKSQI 119 +D++ ET GIP A L+ RL P + RK K Q + Sbjct: 51 TEVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVL 110 Query: 120 EG---HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGII 156 +G KG RV +++D+V+ G ++ +++ +GG + Sbjct: 111 DGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQV 150 >gnl|CDD|130805 TIGR01744, XPRTase, xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen. Length = 191 Score = 41.7 bits (98), Expect = 2e-04 Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 19/146 (13%) Query: 59 SMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKK--------- 109 +M + R + I I E +GI A + +L +P+++ RKK Sbjct: 32 PKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARKKKPLTLTDNL 91 Query: 110 ------SKKHGQKSQI---EGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGI 160 S S + L RVL+I+D + G + V + + +G I GI Sbjct: 92 LTASVHSFTKQTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIA-GI 150 Query: 161 GLFFYDIFPEVPARFRENNIKLHYLA 186 G+ F E ++ LA Sbjct: 151 GIVIEKSFQNGRQELVELGYRVESLA 176 >gnl|CDD|180357 PRK06031, PRK06031, phosphoribosyltransferase; Provisional. Length = 233 Score = 38.2 bits (89), Expect = 0.002 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 22/106 (20%) Query: 77 SIDIIAGGETAGIPFATLLAERLN----LPMIYVRK--------------KSKKHGQKSQ 118 D++AG T G+ A +A +L +P+ RK + G++ Sbjct: 84 DPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLY 143 Query: 119 IEGH---LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG 161 I+ L +G RV +I+D+++ G S+ ++++ + GI GIG Sbjct: 144 IDPRMLPLLEGRRVALIDDVISSGASIVAGLRLL-AACGIEPAGIG 188 >gnl|CDD|130804 TIGR01743, purR_Bsub, pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate. Length = 268 Score = 36.7 bits (85), Expect = 0.005 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 20/90 (22%) Query: 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK-----------KHGQKSQIEG----- 121 ID + T GIP A +A LN+P++ VRK SK G ++I+ Sbjct: 129 IDAVMTVATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAK 188 Query: 122 -HLFKGARVLVIEDLVTLG---NSMFEFVK 147 L G++VL+I+D + G N M + Sbjct: 189 RSLKTGSKVLIIDDFMKAGGTINGMINLLD 218 >gnl|CDD|181702 PRK09213, PRK09213, pur operon repressor; Provisional. Length = 271 Score = 35.5 bits (83), Expect = 0.011 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 25/92 (27%) Query: 68 TVLRNIG------F--ESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSK-------- 111 ++LR IG F + ID + ET GIP A +A LN+P + VR+ SK Sbjct: 113 SILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVS 172 Query: 112 ---KHGQKSQIEG------HLFKGARVLVIED 134 G +IE L +G+RVL+++D Sbjct: 173 INYVSGSSKRIETMSLSKRSLKEGSRVLIVDD 204 >gnl|CDD|185481 PTZ00149, PTZ00149, hypoxanthine phosphoribosyltransferase; Provisional. Length = 241 Score = 35.1 bits (81), Expect = 0.013 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 36/152 (23%) Query: 30 PENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAK------TVLRNIGFESIDIIAG 83 ++ Y L S ++ P Y + I + +I D K V N + I+ G Sbjct: 34 DDDFYDLDSFLIPPHYKNYLTKI--LLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKG 91 Query: 84 GETAGIPFATLLAERLNLPMI----------------YVRKKSKKHGQ---KSQIEG--- 121 F + L + LN I YVR KS + + K +I Sbjct: 92 SRG----FFSALVDYLN--RIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDL 145 Query: 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 K VL++ED++ GN++ +F + ++ Sbjct: 146 SCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFE 177 >gnl|CDD|177930 PLN02293, PLN02293, adenine phosphoribosyltransferase. Length = 187 Score = 35.0 bits (81), Expect = 0.017 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 14/91 (15%) Query: 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQ-----------KSQIEGHL--- 123 I ++AG E G F +A + + +RK K G+ +E H+ Sbjct: 63 ISVVAGIEARGFIFGPPIALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAV 122 Query: 124 FKGARVLVIEDLVTLGNSMFEFVKVIRDSGG 154 G R LVI+DL+ G ++ + ++ +G Sbjct: 123 EPGERALVIDDLIATGGTLCAAINLLERAGA 153 >gnl|CDD|181705 PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated. Length = 189 Score = 34.0 bits (79), Expect = 0.033 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 19/95 (20%) Query: 85 ETAGIPFATLLAERLNLPMIYVRKK-----------------SKKHGQKSQIEG-HLFKG 126 E +GI A + A L +P+++ +KK +K+ + L +G Sbjct: 58 EASGIAPAVMAALALGVPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEG 117 Query: 127 ARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIG 161 RVL+I+D + G + + +I +G + GIG Sbjct: 118 DRVLIIDDFLANGQAALGLIDIIEQAGAKVA-GIG 151 >gnl|CDD|178059 PLN02440, PLN02440, amidophosphoribosyltransferase. Length = 479 Score = 33.1 bits (76), Expect = 0.055 Identities = 9/32 (28%), Positives = 22/32 (68%) Query: 122 HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 + +G RV+V++D + G + + V+++R++G Sbjct: 336 SVLEGKRVVVVDDSIVRGTTSSKIVRMLREAG 367 >gnl|CDD|162218 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase. Length = 442 Score = 31.8 bits (73), Expect = 0.16 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 29/128 (22%) Query: 52 ISFVRARSMIMDLTAKTVLRNIGFE-------SIDIIAGGETAGIPFATLLAERLNLP-- 102 + F R S+I ++ + +G + D++ +G A A+ +P Sbjct: 241 VYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDSGRSAALGFAQASGIPYR 300 Query: 103 --MI---YV-----------RKKSKKHGQK-SQIEGHLFKGARVLVIEDLVTLGNSMFEF 145 +I YV R+ S + K + I +F+G RV++++D + G + + Sbjct: 301 EGLIKNRYVGRTFIMPTQELRELSVR--LKLNPIR-EVFRGKRVVLVDDSIVRGTTSRQI 357 Query: 146 VKVIRDSG 153 VK++RD+G Sbjct: 358 VKMLRDAG 365 >gnl|CDD|180883 PRK07206, PRK07206, hypothetical protein; Provisional. Length = 416 Score = 30.0 bits (68), Expect = 0.56 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 12/101 (11%) Query: 2 IVNYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMI 61 IV+ F +A K E AV S + + + +I+ V I Sbjct: 7 IVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIE-------VIINGDI 59 Query: 62 MDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLP 102 DL LR +G E+I IAG E+ G+ A LAE L Sbjct: 60 DDLVEF--LRKLGPEAI--IAGAES-GVELADRLAEILTPQ 95 >gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional. Length = 442 Score = 29.4 bits (66), Expect = 0.71 Identities = 11/29 (37%), Positives = 20/29 (68%) Query: 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 G RV++++D + G +M VK++RD+G Sbjct: 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDAG 361 >gnl|CDD|161762 TIGR00201, comF, comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis. Length = 190 Score = 28.6 bits (64), Expect = 1.3 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 17/79 (21%) Query: 92 ATLLAERL-----NLPMIYVRKKSKKHGQKS------------QIEGHLFKGARVLVIED 134 A LLA+ L N I +R ++ + ++ + F+G +++++D Sbjct: 101 ADLLAQCLSRWLFNYHNIVIRLNNETQSKLKATLRFLNLENAFDLKNNSFQGRNIVLVDD 160 Query: 135 LVTLGNSMFEFVKVIRDSG 153 +VT G ++ E +++ + G Sbjct: 161 VVTTGATLHEIARLLLELG 179 >gnl|CDD|136048 PRK06781, PRK06781, amidophosphoribosyltransferase; Provisional. Length = 471 Score = 28.1 bits (62), Expect = 2.0 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 25/127 (19%) Query: 52 ISFVRARSMIMDLTAKTVLRNIG-------FESIDIIAGGETAGIPFATLLAERLNLP-- 102 I F R S I + +N+G D++ G + I A AE +P Sbjct: 251 IYFARPDSNIAGINVHAARKNMGKRLAAEAPIEADVVTGVPDSSISAAIGYAEATGIPYE 310 Query: 103 --MIYVRKKSKKHGQKSQ-------------IEGHLFKGARVLVIEDLVTLGNSMFEFVK 147 +I R + Q SQ + G + +G RV++I+D + G + V+ Sbjct: 311 LGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRG-VVEGKRVVMIDDSIVRGTTSKRIVR 369 Query: 148 VIRDSGG 154 ++R++G Sbjct: 370 MLREAGA 376 >gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing). Length = 578 Score = 28.2 bits (63), Expect = 2.0 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 14/68 (20%) Query: 104 IY----VRKKSKKH----GQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGI 155 IY +R+K K H G ++ HL++ E+ V + + MF FV + Sbjct: 78 IYNHKELREKLKLHKFRTGSDCEVIAHLYE----EHGEEFVDMLDGMFSFVLLDTRDNSF 133 Query: 156 I--QDGIG 161 I +D IG Sbjct: 134 IAARDHIG 141 >gnl|CDD|149187 pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation. Length = 501 Score = 27.5 bits (62), Expect = 2.6 Identities = 9/14 (64%), Positives = 9/14 (64%) Query: 21 FEIKAVNFSPENPY 34 F I A N SPEN Y Sbjct: 453 FTITAPNNSPENIY 466 >gnl|CDD|102351 PRK06388, PRK06388, amidophosphoribosyltransferase; Provisional. Length = 474 Score = 27.6 bits (61), Expect = 2.7 Identities = 10/28 (35%), Positives = 19/28 (67%) Query: 126 GARVLVIEDLVTLGNSMFEFVKVIRDSG 153 G R+++++D + GN+M VK++R G Sbjct: 356 GKRIVLVDDSIVRGNTMRFIVKIMRKYG 383 >gnl|CDD|180880 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase; Validated. Length = 442 Score = 27.6 bits (62), Expect = 2.9 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 12/48 (25%) Query: 139 GNSMFEFVKV----IRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKL 182 + MFE KV + +GG G +PE PA ENN K+ Sbjct: 315 TSDMFESYKVANFKHKHAGGDPNVG--------WPESPAMLFENNNKI 354 >gnl|CDD|181757 PRK09285, PRK09285, adenylosuccinate lyase; Provisional. Length = 456 Score = 27.4 bits (62), Expect = 3.0 Identities = 9/12 (75%), Positives = 10/12 (83%) Query: 63 DLTAKTVLRNIG 74 DLT TVLRN+G Sbjct: 336 DLTDSTVLRNLG 347 >gnl|CDD|149401 pfam08328, ASL_C, Adenylosuccinate lyase C-terminal. This domain is found at the C-terminus of adenylosuccinate lyase(ASL; PurB in E. coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain pfam00206. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate. Length = 115 Score = 27.4 bits (62), Expect = 3.1 Identities = 9/12 (75%), Positives = 10/12 (83%) Query: 63 DLTAKTVLRNIG 74 DLT TVLRN+G Sbjct: 6 DLTDSTVLRNLG 17 >gnl|CDD|177882 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase. Length = 189 Score = 27.3 bits (61), Expect = 3.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 125 KGARVLVIEDLVTLGNSMFEFVKVIRDSG 153 KG VL++ED+V GN++ V + G Sbjct: 96 KGKHVLLVEDIVDTGNTLSALVAHLEAKG 124 >gnl|CDD|163028 TIGR02812, fadR_gamma, fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function. Length = 235 Score = 26.9 bits (60), Expect = 4.3 Identities = 9/27 (33%), Positives = 15/27 (55%) Query: 92 ATLLAERLNLPMIYVRKKSKKHGQKSQ 118 LL+ R N+ IY+R K + +K+ Sbjct: 98 DNLLSARTNISAIYIRYAFKNNPEKAL 124 >gnl|CDD|180940 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional. Length = 500 Score = 26.6 bits (59), Expect = 5.3 Identities = 9/28 (32%), Positives = 19/28 (67%) Query: 126 GARVLVIEDLVTLGNSMFEFVKVIRDSG 153 G R+++++D + G + + VK +RD+G Sbjct: 377 GKRIIIVDDSIVRGTTSRKIVKALRDAG 404 >gnl|CDD|130270 TIGR01203, HGPRTase, hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine. Length = 166 Score = 26.4 bits (59), Expect = 5.5 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 9/72 (12%) Query: 88 GIPFATLLAERLNLPMI--YVRKKSKKHGQKSQIE-------GHLFKGARVLVIEDLVTL 138 PF L + +P+ ++ S +G +S + KG VL++ED+V Sbjct: 37 SFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDT 96 Query: 139 GNSMFEFVKVIR 150 G ++ + +++ Sbjct: 97 GLTLQYLLDLLK 108 >gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional. Length = 245 Score = 26.5 bits (58), Expect = 6.1 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 8/31 (25%) Query: 28 FSPENPYHLTS-----GIVSPLY---IDCRK 50 FSP NP H+ + G ++PL+ ++CRK Sbjct: 27 FSPRNPKHVATFGHMFGRLAPLFGLKVECRK 57 >gnl|CDD|185060 PRK15105, PRK15105, peptidoglycan synthase FtsI; Provisional. Length = 578 Score = 26.3 bits (58), Expect = 6.4 Identities = 8/27 (29%), Positives = 19/27 (70%) Query: 97 ERLNLPMIYVRKKSKKHGQKSQIEGHL 123 ++L LP I++R++S+++ ++ HL Sbjct: 151 KKLKLPGIHLREESRRYYPSGEVTAHL 177 >gnl|CDD|178382 PLN02785, PLN02785, Protein HOTHEAD. Length = 587 Score = 25.9 bits (57), Expect = 7.7 Identities = 9/22 (40%), Positives = 14/22 (63%) Query: 80 IIAGGETAGIPFATLLAERLNL 101 I+ GG TAG P A L++ ++ Sbjct: 59 IVVGGGTAGCPLAATLSQNFSV 80 >gnl|CDD|184996 PRK15036, PRK15036, hydroxyisourate hydrolase; Provisional. Length = 137 Score = 26.1 bits (57), Expect = 7.8 Identities = 8/17 (47%), Positives = 10/17 (58%) Query: 168 FPEVPARFRENNIKLHY 184 FPE+P F N + HY Sbjct: 104 FPEIPVEFHINKVNEHY 120 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.325 0.142 0.418 Gapped Lambda K H 0.267 0.0705 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,858,845 Number of extensions: 251852 Number of successful extensions: 705 Number of sequences better than 10.0: 1 Number of HSP's gapped: 684 Number of HSP's successfully gapped: 54 Length of query: 228 Length of database: 5,994,473 Length adjustment: 90 Effective length of query: 138 Effective length of database: 4,049,753 Effective search space: 558865914 Effective search space used: 558865914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 55 (25.0 bits)