RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781011|ref|YP_003065424.1| orotate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(228 letters)
>d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes
[TaxId: 1314]}
Length = 208
Score = 152 bits (384), Expect = 3e-38
Identities = 67/208 (32%), Positives = 119/208 (57%), Gaps = 3/208 (1%)
Query: 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLR 71
+A +A L +IKAV PE+P+ SGI SP+Y D R +S+ + R +I + +T+
Sbjct: 3 LASQIATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKTRDLIENGFVETIKA 62
Query: 72 NIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLV 131
+ F +++IAG TAGIP ++A+++ LP Y+R K K HG +QIEG + KG ++++
Sbjct: 63 H--FPEVEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPKDHGAGNQIEGRVLKGQKMVI 120
Query: 132 IEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191
IEDL++ G S+ + G + + +F Y+ P+ F+E IKL L+ + ++
Sbjct: 121 IEDLISTGGSVLDAAAAASREGADVLGVVAIFTYE-LPKASQNFKEAGIKLITLSNYTEL 179
Query: 192 LTIAEKLKIFNHDVLEEVRCFLDNPMQW 219
+ +A+ +D L ++ F ++ + W
Sbjct: 180 IAVAKLQGYITNDGLHLLKKFKEDQVNW 207
>d1lh0a_ c.61.1.1 (A:) Orotate PRTase {Salmonella typhimurium
[TaxId: 90371]}
Length = 213
Score = 98.3 bits (244), Expect = 4e-22
Identities = 42/213 (19%), Positives = 86/213 (40%), Gaps = 19/213 (8%)
Query: 14 ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNI 73
+ + + F + L SG SP + + + R +++ A+
Sbjct: 6 RQFIEFALNKQVLKF---GEFTLKSGRKSPYFFNAGLFNTG-RDLALLGRFYAE--ALVD 59
Query: 74 GFESIDIIAGGETAGIPFATLLAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKGA 127
D++ G GIP AT A L +LP + RK++K HG+ + G +G
Sbjct: 60 SGIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEAKDHGEGGSLVGSALQG- 118
Query: 128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY-----DIFPEVPARFRENNIKL 182
RV++++D++T G ++ E +++I+ G + + + R+ K+
Sbjct: 119 RVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGEISAIQEVERDYGCKV 178
Query: 183 HYLATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215
+ T D++ E+ + L VR + +
Sbjct: 179 ISIITLKDLIAYLEEKPDMA-EHLAAVRAYREE 210
>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId:
5661]}
Length = 236
Score = 70.5 bits (172), Expect = 1e-13
Identities = 35/204 (17%), Positives = 74/204 (36%), Gaps = 35/204 (17%)
Query: 19 MLFEIKAVNFSPENPYHLTSGIVSP----LYIDCRKLISFVRARSMIMDLTAKTVLRNIG 74
+L + A++ + Y S + SP + D + I D +
Sbjct: 11 LLDDSHALSQLLKKSYRWYSPVFSPRNVPRFADVSSITESPETLKAIRDFLVQRYRAM-- 68
Query: 75 FESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH------------ 122
+ I G + G F ++A L +P + +RK K G + E +
Sbjct: 69 SPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSEPYEKEYKEAAPEVM 128
Query: 123 ------LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR-- 174
+ KG+RV++I+D++ G + ++++ S ++ + + P + A
Sbjct: 129 TIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVV---VEMVSILSIPFLKAAEK 185
Query: 175 ------FRENNIKLHYLATWNDIL 192
R +IK L + + +
Sbjct: 186 IHSTANSRYKDIKFISLLSDDALT 209
>d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 191
Score = 68.9 bits (168), Expect = 3e-13
Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 19/149 (12%)
Query: 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE 120
+M + I I E++GI A + +L +P+++ RK + +
Sbjct: 34 LMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLT 93
Query: 121 G------------------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL 162
HL VL+I+D + G + V +++ +G I GIG+
Sbjct: 94 ASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIA-GIGI 152
Query: 163 FFYDIFPEVPARFRENNIKLHYLATWNDI 191
F + ++ LA +
Sbjct: 153 VIEKSFQPGRDELVKLGYRVESLARIQSL 181
>d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase
TTHA1613 {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 62.8 bits (152), Expect = 2e-11
Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 44 LYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103
I + + + V + +I+ ET+ IP +LAE L LP
Sbjct: 23 RRIPLVEFLGDPEFTRAAAEALRPLVPKEA-----EILFTTETSPIPLTHVLAEALGLPY 77
Query: 104 IYVRKKSKKHGQKSQIE-------------------GHLFKGARVLVIEDLVTLGNSMFE 144
+ R++ + + + I+ RV+++ D+V G +M
Sbjct: 78 VVARRRRRPYMEDPIIQEVQTLTLGVGEVLWLDRRFAEKLLNQRVVLVSDVVASGETMRA 137
Query: 145 FVKVIRDSGGIIQDGIGLF 163
K++ +GG + + +F
Sbjct: 138 MEKMVLRAGGHVVARLAVF 156
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 202
Score = 59.7 bits (144), Expect = 2e-10
Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 27/183 (14%)
Query: 45 YIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI 104
Y+ ++ S + L A ID++ T GIP A A LN+P++
Sbjct: 28 YVYLTDILGKPSVLSKVGKLFAS----VFAEREIDVVMTVATKGIPLAYAAASYLNVPVV 83
Query: 105 YVRKKSK-----------------KHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVK 147
VRK +K + S + + G+ VL+I+D + G ++ +
Sbjct: 84 IVRKDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMIN 143
Query: 148 VIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLE 207
++ + + G+ V R + + L L+T I + ++I N + L
Sbjct: 144 LLDEFNANV---AGIGVLVEAEGVDERLVDEYMSLLTLST---INMKEKSIEIQNGNFLR 197
Query: 208 EVR 210
+
Sbjct: 198 FFK 200
>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 178
Score = 56.3 bits (135), Expect = 2e-09
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 14/127 (11%)
Query: 44 LYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103
L+ D + ++D + ID I G E+ G F LA L +
Sbjct: 26 LFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGF 85
Query: 104 IYVRKKSKKHGQKSQIEGHLFK--------------GARVLVIEDLVTLGNSMFEFVKVI 149
+ VRK K G+ + G+ V++++D++ G S +++
Sbjct: 86 VPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELV 145
Query: 150 RDSGGII 156
+
Sbjct: 146 EQLEANL 152
>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 178
Score = 53.9 bits (129), Expect = 1e-08
Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 18/156 (11%)
Query: 44 LYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103
++ D ++ + + L A+ + G ID IAG ++ G F LA+ L L
Sbjct: 23 VFRDISPVLKDPASFRAAIGLLARHLKATHGGR-IDYIAGLDSRGFLFGPSLAQELGLGC 81
Query: 104 IYVRKKSKKHGQKSQIEGHLFK--------------GARVLVIEDLVTLGNSMFEFVKVI 149
+ +RK+ K G L G RV+V++DL+ G +M +++
Sbjct: 82 VLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQRVVVVDDLLATGGTMNAACELL 141
Query: 150 RDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYL 185
+ + + R + + L
Sbjct: 142 GRLQAEV---LECVSLVELTSLKGREKLAPVPFFSL 174
>d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId:
5741]}
Length = 181
Score = 52.0 bits (124), Expect = 5e-08
Identities = 22/145 (15%), Positives = 53/145 (36%), Gaps = 16/145 (11%)
Query: 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKK----------- 109
+D K V + I + G E+ G ++A L + + +RK
Sbjct: 36 ALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCT 95
Query: 110 -SKKHGQKSQIEGH---LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165
++ + IE L VL+ +D++ G ++ +++ +G ++ Y
Sbjct: 96 FDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLY 155
Query: 166 DI-FPEVPARFRENNIKLHYLATWN 189
+I + + + +L + +
Sbjct: 156 EIEALKGREKVGQKCTRLFSVIREH 180
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 35.8 bits (82), Expect = 0.003
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFK----GARVLVIE 133
I G+ LLA L + + S + L + G +VI+
Sbjct: 27 WKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVID 86
Query: 134 DLVTLGNSMFEFVKVIRD 151
DLV G + ++
Sbjct: 87 DLVDTGGTAVAIREMYPK 104
>d1yfza1 c.61.1.1 (A:3-180) Xanthine-guanine PRTase (XPRTase)
{Thermoanaerobacter tengcongensis [TaxId: 119072]}
Length = 178
Score = 29.2 bits (65), Expect = 0.33
Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 66 AKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHL-- 123
+ + R+ + + ++ G I F + L+ ++LP+ +G ++ G +
Sbjct: 24 GEMITRDYEGKDL-VLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKI 82
Query: 124 -------FKGARVLVIEDLVTLGNSMFEFVKVIRD 151
+G VL++ED++ G ++ + +
Sbjct: 83 IKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLG 117
>d1vdma1 c.61.1.1 (A:1-153) Pprobable purine
phosphoribosyltransferase PH0095 {Pyrococcus horikoshii
[TaxId: 53953]}
Length = 153
Score = 29.0 bits (64), Expect = 0.35
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 77 SIDIIAGGETAGIPFATLLAERL-NLPMIYVRKKSKKHGQKSQIEGH-------LFKGAR 128
D+I G G+ A L+ L ++P+ + K K + + K R
Sbjct: 26 KPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKR 85
Query: 129 VLVIEDLVTLGNSMFEFVKVIRDSGG 154
V++++D+ G ++ ++ ++ G
Sbjct: 86 VVIVDDVSDTGKTLEVVIEEVKKLGA 111
>d1j7ja_ c.61.1.1 (A:) Hypoxanthine PRTase {Salmonella typhimurium
[TaxId: 90371]}
Length = 172
Score = 28.4 bits (63), Expect = 0.59
Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 51 LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKS 110
+I ++ I +L + R S ++ G F L + +P +
Sbjct: 6 MIPEAEIKARIAELGRQITERYKDSGSEMVLVGLLRGSFMFMADLCREVQVPHEVDFMTA 65
Query: 111 KKHGQKSQIEGHL---------FKGARVLVIEDLVTLGNSMFEFVKVIRD 151
+G + +G VL++ED++ GN++ + +++
Sbjct: 66 SSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILGL 115
>d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011
{Haemophilus influenzae [TaxId: 727]}
Length = 412
Score = 26.6 bits (58), Expect = 1.7
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 47 DCRKLISFVRARSMIMDLTAKTV--LRNIGFESIDIIAGGETAGIPFATLLAERLNL 101
+ +A I + AK L+ G + I AGGET+ I L ++
Sbjct: 316 AIQHQFGVDQASHAIENTFAKLAAKLKQYGVTNF-ITAGGETSSIVVQELGFTGFHI 371
>d2c4ka2 c.61.1.2 (A:167-350) PRPP synthetase-associated protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 26.2 bits (57), Expect = 2.4
Identities = 16/151 (10%), Positives = 41/151 (27%), Gaps = 36/151 (23%)
Query: 88 GIPFATLLAERLNLPMIYVRKKSK--------------------------------KHGQ 115
A AERL L + + +++ K
Sbjct: 14 AAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKP 73
Query: 116 KSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARF 175
+ G + G ++++D++ S +++++ G + A
Sbjct: 74 PITVVGDV-GGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSA---EAPR 129
Query: 176 RENNIKLHYLATWNDILTIAEKLKIFNHDVL 206
+ + N + +KL+ +
Sbjct: 130 LIEESSVDEVVVTNTVPHEVQKLQCPKIKTV 160
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 24.5 bits (52), Expect = 7.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 80 IIAGGETAGIPFATLLAERLN 100
+I GG T+G P A L+E+
Sbjct: 30 VIVGGGTSGCPLAATLSEKYK 50
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 24.5 bits (52), Expect = 8.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 80 IIAGGETAGIPFATLLAE 97
IIAGG G+ A L E
Sbjct: 28 IIAGGGLTGLTVAAKLTE 45
>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 188
Score = 24.2 bits (52), Expect = 8.8
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 79 DIIAGGETAGIPFATLLAERLNL 101
++ +A + FA + + L L
Sbjct: 149 GVVTAAGSAPVSFAVEILKSLGL 171
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.142 0.418
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 890,308
Number of extensions: 42574
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 26
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.9 bits)