RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (228 letters) >d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes [TaxId: 1314]} Length = 208 Score = 152 bits (384), Expect = 3e-38 Identities = 67/208 (32%), Positives = 119/208 (57%), Gaps = 3/208 (1%) Query: 12 IAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLR 71 +A +A L +IKAV PE+P+ SGI SP+Y D R +S+ + R +I + +T+ Sbjct: 3 LASQIATQLLDIKAVYLKPEDPFTWASGIKSPIYTDNRVTLSYPKTRDLIENGFVETIKA 62 Query: 72 NIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLV 131 + F +++IAG TAGIP ++A+++ LP Y+R K K HG +QIEG + KG ++++ Sbjct: 63 H--FPEVEVIAGTATAGIPHGAIIADKMTLPFAYIRSKPKDHGAGNQIEGRVLKGQKMVI 120 Query: 132 IEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDI 191 IEDL++ G S+ + G + + +F Y+ P+ F+E IKL L+ + ++ Sbjct: 121 IEDLISTGGSVLDAAAAASREGADVLGVVAIFTYE-LPKASQNFKEAGIKLITLSNYTEL 179 Query: 192 LTIAEKLKIFNHDVLEEVRCFLDNPMQW 219 + +A+ +D L ++ F ++ + W Sbjct: 180 IAVAKLQGYITNDGLHLLKKFKEDQVNW 207 >d1lh0a_ c.61.1.1 (A:) Orotate PRTase {Salmonella typhimurium [TaxId: 90371]} Length = 213 Score = 98.3 bits (244), Expect = 4e-22 Identities = 42/213 (19%), Positives = 86/213 (40%), Gaps = 19/213 (8%) Query: 14 ELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSMIMDLTAKTVLRNI 73 + + + F + L SG SP + + + R +++ A+ Sbjct: 6 RQFIEFALNKQVLKF---GEFTLKSGRKSPYFFNAGLFNTG-RDLALLGRFYAE--ALVD 59 Query: 74 GFESIDIIAGGETAGIPFATLLAERL------NLPMIYVRKKSKKHGQKSQIEGHLFKGA 127 D++ G GIP AT A L +LP + RK++K HG+ + G +G Sbjct: 60 SGIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEAKDHGEGGSLVGSALQG- 118 Query: 128 RVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY-----DIFPEVPARFRENNIKL 182 RV++++D++T G ++ E +++I+ G + + + R+ K+ Sbjct: 119 RVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGEISAIQEVERDYGCKV 178 Query: 183 HYLATWNDILTIAEKLKIFNHDVLEEVRCFLDN 215 + T D++ E+ + L VR + + Sbjct: 179 ISIITLKDLIAYLEEKPDMA-EHLAAVRAYREE 210 >d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId: 5661]} Length = 236 Score = 70.5 bits (172), Expect = 1e-13 Identities = 35/204 (17%), Positives = 74/204 (36%), Gaps = 35/204 (17%) Query: 19 MLFEIKAVNFSPENPYHLTSGIVSP----LYIDCRKLISFVRARSMIMDLTAKTVLRNIG 74 +L + A++ + Y S + SP + D + I D + Sbjct: 11 LLDDSHALSQLLKKSYRWYSPVFSPRNVPRFADVSSITESPETLKAIRDFLVQRYRAM-- 68 Query: 75 FESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGH------------ 122 + I G + G F ++A L +P + +RK K G + E + Sbjct: 69 SPAPTHILGFDARGFLFGPMIAVELEIPFVLMRKADKNAGLLIRSEPYEKEYKEAAPEVM 128 Query: 123 ------LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPAR-- 174 + KG+RV++I+D++ G + ++++ S ++ + + P + A Sbjct: 129 TIRYGSIGKGSRVVLIDDVLATGGTALSGLQLVEASDAVV---VEMVSILSIPFLKAAEK 185 Query: 175 ------FRENNIKLHYLATWNDIL 192 R +IK L + + + Sbjct: 186 IHSTANSRYKDIKFISLLSDDALT 209 >d1y0ba1 c.61.1.1 (A:1-191) Xanthine phosphoribosyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 191 Score = 68.9 bits (168), Expect = 3e-13 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 19/149 (12%) Query: 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE 120 +M + I I E++GI A + +L +P+++ RK + + Sbjct: 34 LMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLT 93 Query: 121 G------------------HLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGL 162 HL VL+I+D + G + V +++ +G I GIG+ Sbjct: 94 ASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIA-GIGI 152 Query: 163 FFYDIFPEVPARFRENNIKLHYLATWNDI 191 F + ++ LA + Sbjct: 153 VIEKSFQPGRDELVKLGYRVESLARIQSL 181 >d1vcha1 c.61.1.1 (A:2-175) Putative phosphoribosyltransferase TTHA1613 {Thermus thermophilus [TaxId: 274]} Length = 174 Score = 62.8 bits (152), Expect = 2e-11 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 24/139 (17%) Query: 44 LYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103 I + + + V + +I+ ET+ IP +LAE L LP Sbjct: 23 RRIPLVEFLGDPEFTRAAAEALRPLVPKEA-----EILFTTETSPIPLTHVLAEALGLPY 77 Query: 104 IYVRKKSKKHGQKSQIE-------------------GHLFKGARVLVIEDLVTLGNSMFE 144 + R++ + + + I+ RV+++ D+V G +M Sbjct: 78 VVARRRRRPYMEDPIIQEVQTLTLGVGEVLWLDRRFAEKLLNQRVVLVSDVVASGETMRA 137 Query: 145 FVKVIRDSGGIIQDGIGLF 163 K++ +GG + + +F Sbjct: 138 MEKMVLRAGGHVVARLAVF 156 >d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 202 Score = 59.7 bits (144), Expect = 2e-10 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 27/183 (14%) Query: 45 YIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMI 104 Y+ ++ S + L A ID++ T GIP A A LN+P++ Sbjct: 28 YVYLTDILGKPSVLSKVGKLFAS----VFAEREIDVVMTVATKGIPLAYAAASYLNVPVV 83 Query: 105 YVRKKSK-----------------KHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFEFVK 147 VRK +K + S + + G+ VL+I+D + G ++ + Sbjct: 84 IVRKDNKVTEGSTVSINYVSGSSNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMIN 143 Query: 148 VIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAEKLKIFNHDVLE 207 ++ + + G+ V R + + L L+T I + ++I N + L Sbjct: 144 LLDEFNANV---AGIGVLVEAEGVDERLVDEYMSLLTLST---INMKEKSIEIQNGNFLR 197 Query: 208 EVR 210 + Sbjct: 198 FFK 200 >d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178 Score = 56.3 bits (135), Expect = 2e-09 Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 14/127 (11%) Query: 44 LYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103 L+ D + ++D + ID I G E+ G F LA L + Sbjct: 26 LFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGF 85 Query: 104 IYVRKKSKKHGQKSQIEGHLFK--------------GARVLVIEDLVTLGNSMFEFVKVI 149 + VRK K G+ + G+ V++++D++ G S +++ Sbjct: 86 VPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELV 145 Query: 150 RDSGGII 156 + Sbjct: 146 EQLEANL 152 >d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Score = 53.9 bits (129), Expect = 1e-08 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 18/156 (11%) Query: 44 LYIDCRKLISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPM 103 ++ D ++ + + L A+ + G ID IAG ++ G F LA+ L L Sbjct: 23 VFRDISPVLKDPASFRAAIGLLARHLKATHGGR-IDYIAGLDSRGFLFGPSLAQELGLGC 81 Query: 104 IYVRKKSKKHGQKSQIEGHLFK--------------GARVLVIEDLVTLGNSMFEFVKVI 149 + +RK+ K G L G RV+V++DL+ G +M +++ Sbjct: 82 VLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQRVVVVDDLLATGGTMNAACELL 141 Query: 150 RDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYL 185 + + + R + + L Sbjct: 142 GRLQAEV---LECVSLVELTSLKGREKLAPVPFFSL 174 >d1l1qa_ c.61.1.1 (A:) Adenine PRTase {Giardia lamblia [TaxId: 5741]} Length = 181 Score = 52.0 bits (124), Expect = 5e-08 Identities = 22/145 (15%), Positives = 53/145 (36%), Gaps = 16/145 (11%) Query: 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKK----------- 109 +D K V + I + G E+ G ++A L + + +RK Sbjct: 36 ALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCT 95 Query: 110 -SKKHGQKSQIEGH---LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFY 165 ++ + IE L VL+ +D++ G ++ +++ +G ++ Y Sbjct: 96 FDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLY 155 Query: 166 DI-FPEVPARFRENNIKLHYLATWN 189 +I + + + +L + + Sbjct: 156 EIEALKGREKVGQKCTRLFSVIREH 180 >d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase) {Escherichia coli [TaxId: 562]} Length = 150 Score = 35.8 bits (82), Expect = 0.003 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 4/78 (5%) Query: 78 IDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFK----GARVLVIE 133 I G+ LLA L + + S + L + G +VI+ Sbjct: 27 WKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVID 86 Query: 134 DLVTLGNSMFEFVKVIRD 151 DLV G + ++ Sbjct: 87 DLVDTGGTAVAIREMYPK 104 >d1yfza1 c.61.1.1 (A:3-180) Xanthine-guanine PRTase (XPRTase) {Thermoanaerobacter tengcongensis [TaxId: 119072]} Length = 178 Score = 29.2 bits (65), Expect = 0.33 Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 10/95 (10%) Query: 66 AKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHL-- 123 + + R+ + + ++ G I F + L+ ++LP+ +G ++ G + Sbjct: 24 GEMITRDYEGKDL-VLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKI 82 Query: 124 -------FKGARVLVIEDLVTLGNSMFEFVKVIRD 151 +G VL++ED++ G ++ + + Sbjct: 83 IKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLG 117 >d1vdma1 c.61.1.1 (A:1-153) Pprobable purine phosphoribosyltransferase PH0095 {Pyrococcus horikoshii [TaxId: 53953]} Length = 153 Score = 29.0 bits (64), Expect = 0.35 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 8/86 (9%) Query: 77 SIDIIAGGETAGIPFATLLAERL-NLPMIYVRKKSKKHGQKSQIEGH-------LFKGAR 128 D+I G G+ A L+ L ++P+ + K K + + K R Sbjct: 26 KPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKR 85 Query: 129 VLVIEDLVTLGNSMFEFVKVIRDSGG 154 V++++D+ G ++ ++ ++ G Sbjct: 86 VVIVDDVSDTGKTLEVVIEEVKKLGA 111 >d1j7ja_ c.61.1.1 (A:) Hypoxanthine PRTase {Salmonella typhimurium [TaxId: 90371]} Length = 172 Score = 28.4 bits (63), Expect = 0.59 Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 9/110 (8%) Query: 51 LISFVRARSMIMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKS 110 +I ++ I +L + R S ++ G F L + +P + Sbjct: 6 MIPEAEIKARIAELGRQITERYKDSGSEMVLVGLLRGSFMFMADLCREVQVPHEVDFMTA 65 Query: 111 KKHGQKSQIEGHL---------FKGARVLVIEDLVTLGNSMFEFVKVIRD 151 +G + +G VL++ED++ GN++ + +++ Sbjct: 66 SSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILGL 115 >d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011 {Haemophilus influenzae [TaxId: 727]} Length = 412 Score = 26.6 bits (58), Expect = 1.7 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 47 DCRKLISFVRARSMIMDLTAKTV--LRNIGFESIDIIAGGETAGIPFATLLAERLNL 101 + +A I + AK L+ G + I AGGET+ I L ++ Sbjct: 316 AIQHQFGVDQASHAIENTFAKLAAKLKQYGVTNF-ITAGGETSSIVVQELGFTGFHI 371 >d2c4ka2 c.61.1.2 (A:167-350) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Score = 26.2 bits (57), Expect = 2.4 Identities = 16/151 (10%), Positives = 41/151 (27%), Gaps = 36/151 (23%) Query: 88 GIPFATLLAERLNLPMIYVRKKSK--------------------------------KHGQ 115 A AERL L + + +++ K Sbjct: 14 AAKRAQSYAERLRLGLAVIHGEAQCTELDMDDGRHSPPMVKNATVHPGLELPLMMAKEKP 73 Query: 116 KSQIEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARF 175 + G + G ++++D++ S +++++ G + A Sbjct: 74 PITVVGDV-GGRIAIIVDDIIDDVESFVAAAEILKERGAYKIYVMATHGILSA---EAPR 129 Query: 176 RENNIKLHYLATWNDILTIAEKLKIFNHDVL 206 + + N + +KL+ + Sbjct: 130 LIEESSVDEVVVTNTVPHEVQKLQCPKIKTV 160 >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351 Score = 24.5 bits (52), Expect = 7.6 Identities = 9/21 (42%), Positives = 13/21 (61%) Query: 80 IIAGGETAGIPFATLLAERLN 100 +I GG T+G P A L+E+ Sbjct: 30 VIVGGGTSGCPLAATLSEKYK 50 >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 Score = 24.5 bits (52), Expect = 8.6 Identities = 9/18 (50%), Positives = 10/18 (55%) Query: 80 IIAGGETAGIPFATLLAE 97 IIAGG G+ A L E Sbjct: 28 IIAGGGLTGLTVAAKLTE 45 >d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188 Score = 24.2 bits (52), Expect = 8.8 Identities = 5/23 (21%), Positives = 11/23 (47%) Query: 79 DIIAGGETAGIPFATLLAERLNL 101 ++ +A + FA + + L L Sbjct: 149 GVVTAAGSAPVSFAVEILKSLGL 171 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.325 0.142 0.418 Gapped Lambda K H 0.267 0.0532 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 890,308 Number of extensions: 42574 Number of successful extensions: 164 Number of sequences better than 10.0: 1 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 26 Length of query: 228 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 146 Effective length of database: 1,281,736 Effective search space: 187133456 Effective search space used: 187133456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 51 (23.9 bits)