BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781011|ref|YP_003065424.1| orotate
phosphoribosyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(228 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 228
Score = 469 bits (1206), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MIVNYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSM 60
MIVNYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSM
Sbjct: 1 MIVNYFPQQNIIAELVAKMLFEIKAVNFSPENPYHLTSGIVSPLYIDCRKLISFVRARSM 60
Query: 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE 120
IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE
Sbjct: 61 IMDLTAKTVLRNIGFESIDIIAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIE 120
Query: 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNI 180
GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNI
Sbjct: 121 GHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNI 180
Query: 181 KLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSKKNGGIGE 228
KLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSKKNGGIGE
Sbjct: 181 KLHYLATWNDILTIAEKLKIFNHDVLEEVRCFLDNPMQWSKKNGGIGE 228
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 28.1 bits (61), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 84 GETAGIPFATL----LAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLV 131
G G PFA A++ LP+I + K+S H Q + EG F G +++
Sbjct: 339 GAIFGCPFADQRDMDFAKKYGLPIIPIMKRSINHSQDIE-EGKAFSGDGIMI 389
>gi|254780323|ref|YP_003064736.1| ATP/ADP translocase [Candidatus Liberibacter asiaticus str. psy62]
Length = 491
Score = 26.2 bits (56), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 106 VRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGNSMFE----FVKVIRDSGGIIQDGIG 161
VR+ +Q G + ++ I ++ LG+++ + F I I+ G G
Sbjct: 300 VRQLYPTQNSYAQFMGQFIQWTGIVTIVFMI-LGSNILKSFRWFTSAIITPLMILITGGG 358
Query: 162 LFFYDIFPEVPARFRENNIKL------HYLATWNDILTIAEKLKIFNHD 204
F + IF + F E+ IKL +L + ++L+ A K +F+
Sbjct: 359 FFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDST 407
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 437
Score = 24.6 bits (52), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 16/116 (13%)
Query: 81 IAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGN 140
I GG + GI LNL ++ K G+K +I + K L+ ++ +
Sbjct: 181 IPGGASVGI---------LNLSELF--SKVMGSGRKKKIRMSVQKCYPELMRDE----SD 225
Query: 141 SMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAE 196
+ + V RDS ++++ G+ F D F ++ AR N I + D+L + E
Sbjct: 226 RLIDMDTVHRDSIQMVEN-YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280
>gi|254780485|ref|YP_003064898.1| biotin synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 328
Score = 23.9 bits (50), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 123 LFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKL 182
+ KG + L +E +TLG FE +++ + GL +Y+ + RF +
Sbjct: 128 MIKGVKSLGLETCMTLGMLSFEQAQILSKA--------GLDYYNHNIDTSERFYPHVTTT 179
Query: 183 HYLATWNDILTIAEKLK 199
H T+ D L E ++
Sbjct: 180 H---TFEDRLQTLENVR 193
>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 374
Score = 23.9 bits (50), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 140 NSMFEFVKVIRDSGGIIQDGIGLF 163
N+M E VK+I D ++Q G+ F
Sbjct: 203 NAMLEEVKLIPDVNNVVQSGLVTF 226
>gi|254780781|ref|YP_003065194.1| 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 285
Score = 23.5 bits (49), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 119 IEGHLFKGARVLVIEDLVTLGNSMFEFVKVIRDSGGIIQDGIGLFFYDIFPE----VPAR 174
IE + F GAR ++E + S+ I S II G Y P VP
Sbjct: 184 IEDNCFIGARSEIVEGCIIREGSVLGMGVFIGKSTKIIDRNTGEITYGEVPSYSVVVPGS 243
Query: 175 FRENNIK 181
+ N+K
Sbjct: 244 YPSINLK 250
>gi|254780998|ref|YP_003065411.1| hypothetical protein CLIBASIA_04495 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 146
Score = 23.5 bits (49), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 5 YFPQQNIIAELVAKMLFEIKAVNFSPENP----YHLTSG--IVSPLYIDCRKLISFVRAR 58
Y QNI+A ++K+ I+ N ++P Y ++ + LYI K I +
Sbjct: 38 YMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCGLLYI--VKSIYAHKKI 95
Query: 59 SMIMDLTAKTVLRNIGF 75
S I+ + + T+L+++G
Sbjct: 96 SEILKMDSLTILQHLGL 112
>gi|254780872|ref|YP_003065285.1| 3-demethylubiquinone-9 3-methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 254
Score = 22.3 bits (46), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 105 YVRKKSKKHGQKSQIEGHLFKGARV 129
Y++ K +H Q + H FKG R+
Sbjct: 46 YIQDKIMQHFQCKSDDTHPFKGLRI 70
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.325 0.142 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,125
Number of Sequences: 1233
Number of extensions: 6153
Number of successful extensions: 28
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 12
length of query: 228
length of database: 328,796
effective HSP length: 71
effective length of query: 157
effective length of database: 241,253
effective search space: 37876721
effective search space used: 37876721
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 37 (18.9 bits)