HHsearch alignment for GI: 254781012 and conserved domain: COG0084
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair].
Probab=96.68 E-value=0.051 Score=31.91 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=102.5
Q ss_pred CCCEEEEECCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC--
Q ss_conf 66423750881----788987498741887399983895148989899999999999838688469950134527899--
Q gi|254781012|r 8 VPDDWHLHLRD----GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTETT-- 81 (349)
Q Consensus 8 ~~~D~HvH~Re----g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~-- 81 (349)
T Consensus 2 ~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~------~g~~~~~~~~~~~--la~~y~----~v~~~~G~HP~~~~ 69 (256)
T COG0084 2 MLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVV------VGTDLEDFKRALE--LAEKYP----NVYAAVGVHPLDAD 69 (256)
T ss_pred CCEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEE------EECCHHHHHHHHH--HHHHCC----CEEEEEEECCCCCC
T ss_conf 62785057880332689999999999859937999------6158888899999--998689----86899866887333
Q ss_pred C--HH---HHHHHHHC-CCEEEHHHCCCCCEECCCCCCCHHHHH----HHHHHHHHHCCCCEECCCCCCCCCCCCHHHHH
Q ss_conf 9--88---99874406-872102210455100256541006889----99999998739822202575555543001467
Q gi|254781012|r 82 D--PD---DVEKGFTS-QLVQAIKLYFAGSTTNSHHGIRNIDRV----MPVLERMETIGMPLCIHGEILNQDIDIFDREL 151 (349)
Q Consensus 82 ~--~~---~~~~~~~~-~~~~~~k~~~~~~~~~~~~~v~~~~~~----~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~ 151 (349)
T Consensus 70 ~~~~~~~~~l~~~~~~~~~vvaIGEiGLD--y~~~~~~-~~~~Q~~~F~~ql~lA~~~~lPviIH~R~---------A~~ 137 (256)
T COG0084 70 EHSEEDLEELEQLAEHHPKVVAIGEIGLD--YYWDKEP-DKERQEEVFEAQLELAKELNLPVIIHTRD---------AHE 137 (256)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCC--CCCCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEECCC---------CHH
T ss_conf 36788999999987218985899833468--5656664-47899999999999999739977998674---------279
Q ss_pred HHHHHHHHHHHHHH--CCCEEEEECCCHHHHH-HHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHH
Q ss_conf 65457899999620--6953997057858999-99870573320230231003978861378883113213469999999
Q gi|254781012|r 152 MFIDKILDPLRNKL--PNLKIILEHITTSNGI-DYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRL 228 (349)
Q Consensus 152 ~~~~~~l~~~~a~~--~~~~iHi~HiST~~sv-~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~ 228 (349)
T Consensus 138 d----~~~iL~~~~~~~~gi~H-cFsGs~e~a~~~~d~G---------~yisis---------G~itf----k~a~~~~e 190 (256)
T COG0084 138 D----TLEILKEEGAPVGGVLH-CFSGSAEEARKLLDLG---------FYISIS---------GIVTF----KNAEKLRE 190 (256)
T ss_pred H----HHHHHHHCCCCCCEEEE-CCCCCHHHHHHHHHCC---------EEEEEC---------CEEEC----CCCHHHHH
T ss_conf 9----99999864878888998-3789799999999769---------289978---------66641----78588999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHCCHHHCCC
Q ss_conf 999999769941897138886531332154577544543679999999972--0699999999982431788188
Q gi|254781012|r 229 SLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFE--EENKLENLESFVSINGATWYGI 301 (349)
Q Consensus 229 aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~--~~~~L~~l~~~~s~npa~~~gl 301 (349)
T Consensus 191 v~~~iPld-r--LL~ETDs-Pyl~P-----~p~rGkrNeP~~v~~v~~~iAelk~~~~eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 191 VARELPLD-R--LLLETDA-PYLAP-----VPYRGKRNEPAYVRHVAEKLAELKGISAEEVAEITTENAKRLFGL 256 (256)
T ss_pred HHHHCCHH-H--EEECCCC-CCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99959976-7--6864579-88888-----777999999647999999999875979999999999999998568