HHsearch alignment for GI: 254781012 and conserved domain: COG0804

>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism].
Probab=96.70  E-value=0.049  Score=32.02  Aligned_cols=263  Identities=16%  Similarity=0.154  Sum_probs=134.6

Q ss_pred             EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEE---CCC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf             558646642375088178898749874188739998---389--514898989999999999983868846995013452
Q gi|254781012|r    3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALV---MPN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL   77 (349)
Q Consensus         3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~---MPN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l   77 (349)
T Consensus       125 ~I~TAGGiDtHiHfI~Pqqi~---~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG--~w~i~rMl~a~d-~~p~N~g~lgKG  198 (568)
T COG0804         125 KIVTAGGIDTHIHFICPQQIE---EALASGITTMIGGGTGPADGTNATTCTPG--PWHIARMLQAAD-GLPMNIGFLGKG  198 (568)
T ss_pred             EEEEECCCCCEEEEECHHHHH---HHHHCCCEEEECCCCCCCCCCCCCCCCCC--HHHHHHHHHHHH-CCCEEEEEEECC
T ss_conf             389605532126886678899---99863867886486687777654011587--879999998622-485356776247


Q ss_pred             CCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             78999889987440687210221045510025654100688999999998739822202575555543001467654578
Q gi|254781012|r   78 TETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKI  157 (349)
Q Consensus        78 t~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~  157 (349)
T Consensus       199 n~s~-~~~L~Eqi~a-Ga~GlKlH-------EDWG~-TpaaI~~~L~VAD~~DvqVaiHtDTL--------NEsGfvEdT  260 (568)
T COG0804         199 NASN-PAPLAEQIEA-GAIGLKLH-------EDWGA-TPAAIDTCLSVADEYDVQVAIHTDTL--------NESGFVEDT  260 (568)
T ss_pred             CCCC-CHHHHHHHHH-CCCEEEEE-------CCCCC-CHHHHHHHHHHHHHHCEEEEEEECCC--------CCCCCHHHH
T ss_conf             7789-5668999860-54135761-------11489-87999988764331163799960665--------433413768


Q ss_pred             HHHHHHHHCCCEEEEECCCHH---HHHHHHHHCC--CCC-EEE-------------------ECCCCCCC-HHHHHCCCC
Q ss_conf             999996206953997057858---9999987057--332-023-------------------02310039-788613788
Q gi|254781012|r  158 LDPLRNKLPNLKIILEHITTS---NGIDYVNNAT--NIA-GSI-------------------TVHHLIIN-RNAIFHDGL  211 (349)
Q Consensus       158 l~~~~a~~~~~~iHi~HiST~---~sv~lir~ak--~vt-aEV-------------------TPHHL~lt-~~d~~~~~~  211 (349)
T Consensus       261 i~----A~~gRtIHtyHtEGAGGGHAPDiikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDv-----  331 (568)
T COG0804         261 IA----AIKGRTIHTYHTEGAGGGHAPDIIKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDV-----  331 (568)
T ss_pred             HH----HHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH-----
T ss_conf             98----745955677631677887762799870578767678899878451647876304000214898982022-----


Q ss_pred             CCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC--------
Q ss_conf             8311321346999999999999976-9941897138886531332154577544543679999999972069--------
Q gi|254781012|r  212 NPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN--------  282 (349)
Q Consensus       212 ~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~--------  282 (349)
T Consensus       332 ---aFAeSRIR~e--TIAAEdiLhDmGaf-SmisSDSQAM---------GRvG-Evi~RtwQtA~kmK~qrG~L~~d~~~  395 (568)
T COG0804         332 ---AFAESRIRPE--TIAAEDILHDMGAF-SMISSDSQAM---------GRVG-EVITRTWQTADKMKKQRGALPEDAGG  395 (568)
T ss_pred             ---HHHHHCCCHH--HHHHHHHHHHCCCE-EEECCCHHHH---------HCCC-HHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             ---2445134456--66678877640336-7751605763---------0101-64556888888899862899887787


Q ss_pred             ----CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf             ----99999999824317881889--------888528999479
Q gi|254781012|r  283 ----KLENLESFVSINGATWYGIP--------VNTRKISLKRRE  314 (349)
Q Consensus       283 ----~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~  314 (349)
T Consensus       396 nDN~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~Pa  439 (568)
T COG0804         396 NDNFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPA  439 (568)
T ss_pred             CCCHHHHHHHHHEECCHHHHCCCCHHCCCEECCCEEEEEEECHH
T ss_conf             74177865545433177785463001054402421335640444