HHsearch alignment for GI: 254781012 and conserved domain: COG0804
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism].
Probab=96.70 E-value=0.049 Score=32.02 Aligned_cols=263 Identities=16% Similarity=0.154 Sum_probs=134.6
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEE---CCC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 558646642375088178898749874188739998---389--514898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALV---MPN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~---MPN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
T Consensus 125 ~I~TAGGiDtHiHfI~Pqqi~---~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG--~w~i~rMl~a~d-~~p~N~g~lgKG 198 (568)
T COG0804 125 KIVTAGGIDTHIHFICPQQIE---EALASGITTMIGGGTGPADGTNATTCTPG--PWHIARMLQAAD-GLPMNIGFLGKG 198 (568)
T ss_pred EEEEECCCCCEEEEECHHHHH---HHHHCCCEEEECCCCCCCCCCCCCCCCCC--HHHHHHHHHHHH-CCCEEEEEEECC
T ss_conf 389605532126886678899---99863867886486687777654011587--879999998622-485356776247
Q ss_pred CCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 78999889987440687210221045510025654100688999999998739822202575555543001467654578
Q gi|254781012|r 78 TETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKI 157 (349)
Q Consensus 78 t~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~ 157 (349)
T Consensus 199 n~s~-~~~L~Eqi~a-Ga~GlKlH-------EDWG~-TpaaI~~~L~VAD~~DvqVaiHtDTL--------NEsGfvEdT 260 (568)
T COG0804 199 NASN-PAPLAEQIEA-GAIGLKLH-------EDWGA-TPAAIDTCLSVADEYDVQVAIHTDTL--------NESGFVEDT 260 (568)
T ss_pred CCCC-CHHHHHHHHH-CCCEEEEE-------CCCCC-CHHHHHHHHHHHHHHCEEEEEEECCC--------CCCCCHHHH
T ss_conf 7789-5668999860-54135761-------11489-87999988764331163799960665--------433413768
Q ss_pred HHHHHHHHCCCEEEEECCCHH---HHHHHHHHCC--CCC-EEE-------------------ECCCCCCC-HHHHHCCCC
Q ss_conf 999996206953997057858---9999987057--332-023-------------------02310039-788613788
Q gi|254781012|r 158 LDPLRNKLPNLKIILEHITTS---NGIDYVNNAT--NIA-GSI-------------------TVHHLIIN-RNAIFHDGL 211 (349)
Q Consensus 158 l~~~~a~~~~~~iHi~HiST~---~sv~lir~ak--~vt-aEV-------------------TPHHL~lt-~~d~~~~~~ 211 (349)
T Consensus 261 i~----A~~gRtIHtyHtEGAGGGHAPDiikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDv----- 331 (568)
T COG0804 261 IA----AIKGRTIHTYHTEGAGGGHAPDIIKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDV----- 331 (568)
T ss_pred HH----HHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH-----
T ss_conf 98----745955677631677887762799870578767678899878451647876304000214898982022-----
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC--------
Q ss_conf 8311321346999999999999976-9941897138886531332154577544543679999999972069--------
Q gi|254781012|r 212 NPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN-------- 282 (349)
Q Consensus 212 ~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~-------- 282 (349)
T Consensus 332 ---aFAeSRIR~e--TIAAEdiLhDmGaf-SmisSDSQAM---------GRvG-Evi~RtwQtA~kmK~qrG~L~~d~~~ 395 (568)
T COG0804 332 ---AFAESRIRPE--TIAAEDILHDMGAF-SMISSDSQAM---------GRVG-EVITRTWQTADKMKKQRGALPEDAGG 395 (568)
T ss_pred ---HHHHHCCCHH--HHHHHHHHHHCCCE-EEECCCHHHH---------HCCC-HHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf ---2445134456--66678877640336-7751605763---------0101-64556888888899862899887787
Q ss_pred ----CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf ----99999999824317881889--------888528999479
Q gi|254781012|r 283 ----KLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 283 ----~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
T Consensus 396 nDN~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~Pa 439 (568)
T COG0804 396 NDNFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPA 439 (568)
T ss_pred CCCHHHHHHHHHEECCHHHHCCCCHHCCCEECCCEEEEEEECHH
T ss_conf 74177865545433177785463001054402421335640444