HHsearch alignment for GI: 254781012 and conserved domain: PRK13207
>PRK13207 ureC urease subunit alpha; Reviewed.
Probab=97.98 E-value=0.001 Score=42.44 Aligned_cols=261 Identities=17% Similarity=0.180 Sum_probs=137.8
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC---CC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 5586466423750881788987498741887399983---89--514898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVM---PN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~M---PN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
T Consensus 125 ~I~TaGgiDtHvHfi~Pqq~---~~Al~sGiTT~iGGGtGPa~Gt~att~tpG~--~~i~~ml~a~d-~~P~N~g~---~ 195 (568)
T PRK13207 125 LIVTAGGIDTHIHFICPQQI---EEALASGVTTMIGGGTGPATGTNATTCTPGP--WHIHRMLQAAD-AFPVNIGF---L 195 (568)
T ss_pred CEEECCCEEEEEEECCHHHH---HHHHHCCCEEEECCCCCCCCCCCCCCCCCCH--HHHHHHHHHHH-CCCCCEEE---E
T ss_conf 07712611665530588789---9998558668745876887666566668977--99999998654-07721356---6
Q ss_pred CCCC--CHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7899--98899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 78 TETT--DPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 78 t~~~--~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
T Consensus 196 gKGn~s~~~~l~eqi~A-Ga~GlKiH-------EDwGa-tpa~Id~~L~vad~~DvQvaiHTDtL--------NEsGfvE 258 (568)
T PRK13207 196 GKGNASLPEALEEQIEA-GAIGLKLH-------EDWGA-TPAAIDNCLSVADEYDVQVAIHTDTL--------NESGFVE 258 (568)
T ss_pred ECCCCCCCHHHHHHHHH-CCEEEEEE-------CCCCC-CHHHHHHHHHHHCCCCEEEEEEECCC--------CCCCEEC
T ss_conf 33667882789999861-82578850-------00378-88899878654122473699970666--------5566031
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHH---HHHHHHCC--CC-CEEE-------------------ECCCCCCCH-HHHHCC
Q ss_conf 7899999620695399705785899---99987057--33-2023-------------------023100397-886137
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTSNG---IDYVNNAT--NI-AGSI-------------------TVHHLIINR-NAIFHD 209 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~~s---v~lir~ak--~v-taEV-------------------TPHHL~lt~-~d~~~~ 209 (349)
T Consensus 259 dT~~----Ai~gRtIHtyHtEGAGGGHAPDii~v~g~~nvLPsSTNPT~PyT~NT~dEhlDMlMvcHhL~~~ipeDva-- 332 (568)
T PRK13207 259 DTIA----AFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPSIPEDVA-- 332 (568)
T ss_pred CHHH----HHCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCHHHHH--
T ss_conf 2366----6279457776405777777616777624787677888999886656223312748874047988703566--
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC------
Q ss_conf 888311321346999999999999976-9941897138886531332154577544543679999999972069------
Q gi|254781012|r 210 GLNPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN------ 282 (349)
Q Consensus 210 ~~~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~------ 282 (349)
T Consensus 333 ------FAeSRIR~e--TIAAEDvLhD~Gai-Si~sSDsQaM---------GRvG-Evi~RTwQtA~kmK~qrG~L~~d~ 393 (568)
T PRK13207 333 ------FAESRIRRE--TIAAEDILHDLGAF-SMISSDSQAM---------GRVG-EVIIRTWQTAHKMKVQRGALPGDS 393 (568)
T ss_pred ------HHHHHCHHH--HHHHHHHHHHCCCE-EEECCCHHHC---------CCCC-CEEECHHHHHHHHHHHCCCCCCCC
T ss_conf ------666310066--66666654102413-3211520331---------5210-101124776999987448898877
Q ss_pred ------CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf ------99999999824317881889--------888528999479
Q gi|254781012|r 283 ------KLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 283 ------~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
T Consensus 394 ~~~DN~RikRYiAKyTINPAIahGis~~vGSvE~GK~ADlVlW~Pa 439 (568)
T PRK13207 394 ERNDNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPA 439 (568)
T ss_pred CCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEEEEECHH
T ss_conf 6665347877766621477886475322056457624227752536