HHsearch alignment for GI: 254781012 and conserved domain: TIGR03121
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.00 E-value=3.4e-08 Score=70.10 Aligned_cols=201 Identities=18% Similarity=0.171 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCC--EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE------EEEECC--------
Q ss_conf 410068899999999873982--2202575555543001467654578999996206953------997057--------
Q gi|254781012|r 112 GIRNIDRVMPVLERMETIGMP--LCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLK------IILEHI-------- 175 (349)
Q Consensus 112 ~v~~~~~~~~~le~~~~~~~~--i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~------iHi~Hi-------- 175 (349)
T Consensus 208 ~vTpreIi~~L~~a~e~LglPH~lHvH~nnLG~PGN----~~ttleT~~~---~--eg~~~~r~q~~HltHiQFhsYgg~ 278 (556)
T TIGR03121 208 GITPREIIKGLARANEELGLPHSIHVHCNNLGVPGN----YETTLDTLDA---A--EGVKPNRNQVLHLTHVQFHSYGGT 278 (556)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC----HHHHHHHHHH---H--CCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 888999999999999854899635771266899861----6899999998---6--599754444057645742014788
Q ss_pred ------CHHHHH-HHHHHCCCCCEEE---------E-----C--CCCCC------CHHHHHCCCCCCCEEECCC-CCCHH
Q ss_conf ------858999-9987057332023---------0-----2--31003------9788613788831132134-69999
Q gi|254781012|r 176 ------TTSNGI-DYVNNATNIAGSI---------T-----V--HHLII------NRNAIFHDGLNPHYYCLPI-PKREK 225 (349)
Q Consensus 176 ------ST~~sv-~lir~ak~vtaEV---------T-----P--HHL~l------t~~d~~~~~~~~~~k~nPP-lR~~~ 225 (349)
T Consensus 279 ~~~~f~S~a~~ia~~vN~~~nit~DvGqv~fg~T~tmt~D~p~e~~l~~~~~~KW~~~DvE~e~-g~--GvvP~~Y~~k~ 355 (556)
T TIGR03121 279 SWRDFESGAEKIADYVNANPNVTIDVGQVTFGETTTMTADGPMEYDLHKLTGLKWANKDVELET-GS--GVVPFKYSPKN 355 (556)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCC-CC--CEEEEEECCCC
T ss_conf 8777205689999998359987887563313770687446588876566516983777422266-76--15678863778
Q ss_pred HHHHHHHHHH--------CCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHH---------------------
Q ss_conf 9999999997--------69941897138886531332154577544543679999999---------------------
Q gi|254781012|r 226 HRLSLRKAAL--------SGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQ--------------------- 276 (349)
Q Consensus 226 dr~aL~~ai~--------~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~--------------------- 276 (349)
T Consensus 356 ~v~alQWAIGLEl~Ll~~DPw-rv~lTTDh----------PNG-gpFt~YP~li~~Lm~~~~R~~~l~~~~~~~~~~s~L 423 (556)
T TIGR03121 356 PVHALQWAIGLELFLLIKDPW-RVFLTTDH----------PNG-GPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTL 423 (556)
T ss_pred CCCEEEEEECCHHHCCCCCHH-HHEEECCC----------CCC-CCCCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHCCC
T ss_conf 741367760722122589847-82330469----------999-855412899999708999999987659999950565
Q ss_pred -HHHCCCCHHHHHHHHHHCCHHHCCCC-------CCCCEEEEEECCCC--EEE--CHHHCCCCCCEEECCCCE
Q ss_conf -97206999999999824317881889-------88852899947971--784--711226777714657976
Q gi|254781012|r 277 -IFEEENKLENLESFVSINGATWYGIP-------VNTRKISLKRREQP--IIF--DEKITTSTGSITIFNPIF 337 (349)
Q Consensus 277 -~~~~~~~L~~l~~~~s~npa~~~gl~-------~~~~~i~l~d~~~~--~~v--~~~~~~sk~~~tpF~~g~ 337 (349)
T Consensus 424 ~~idREysL~EiA~~TRA~PAk~LGL~~kGhLg~GAdADIaIYd~~p~~~~~~~~~~e~~F~~~~yv~Kd-G~ 495 (556)
T TIGR03121 424 GGIDREYSLYEIAIMTRAGPAKLLGLTDRGHLGVGADADIAVYDINPDDVDTDYADVEKAFSTALYVFKD-GE 495 (556)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEC-CE
T ss_conf 5554212499999997125778728665789989875757997068543568869999997287579888-98