HHsearch alignment for GI: 254781012 and conserved domain: cd01293
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.51 E-value=4.5e-11 Score=87.93 Aligned_cols=280 Identities=13% Similarity=0.105 Sum_probs=127.8
Q ss_pred CEEEECCCCEEEEECC-----C--------------------------HHHH----HHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 6558646642375088-----1--------------------------7889----874987418873999838951489
Q gi|254781012|r 2 KKISLRVPDDWHLHLR-----D--------------------------GEIL----KTVLRDTAKNFRRALVMPNIDPPI 46 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~R-----e--------------------------g~~~----~~t~aa~aGG~TtV~~MPNT~Ppi 46 (349)
T Consensus 44 G~~v~PGlID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~T~v~~~~~~~~~~ 123 (398)
T cd01293 44 GRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLEAIIAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAA 123 (398)
T ss_pred CCEEEECCEEHHHCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCH
T ss_conf 98997170307258333623566654553502557888898774299999999999999999965961887643314522
Q ss_pred CCHHHHHHHHHHHHHHCCC--CCEEEEEEEEEECCCCCHHH-HHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf 8989999999999983868--84699501345278999889-98744068721022104551002565410068899999
Q gi|254781012|r 47 ITVDDACAYRQRILNALPP--EYDFSPLMTIYLTETTDPDD-VEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVL 123 (349)
Q Consensus 47 ~t~e~~~~~~~r~~~~~~~--~~~~~~~~~~~lt~~~~~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~l 123 (349)
T Consensus 124 ~~-~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~~-~----g~~~~~~~~~-~~~~~l~~~~ 195 (398)
T cd01293 124 GL-KALEALL-ELREEWADLIDLQIVAFPQHGLLSTPGGEELMREALKMGADV-V----GGIPPAEIDE-DGEESLDTLF 195 (398)
T ss_pred HH-HHHHHHH-HHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCE-E----EECCCCCCCC-CHHHHHHHHH
T ss_conf 15-6999999-999984644340136447731246641899999999824600-6----4126656788-7799999999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH---------HHHHHHHHHCCCCCEEE
Q ss_conf 999873982220257555554300146765457899999620695399705785---------89999987057332023
Q gi|254781012|r 124 ERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITT---------SNGIDYVNNATNIAGSI 194 (349)
Q Consensus 124 e~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST---------~~sv~lir~ak~vtaEV 194 (349)
T Consensus 196 ~~A~~~g~~v~~H~~e~~~~------~~~~~~~~~~~~~~~g~~~~~~~~H~~~l~~~~~~~~~~~~~~la~-~gv~v~~ 268 (398)
T cd01293 196 ELAQEHGLDIDLHLDETDDP------GSRTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAE-AGISVVS 268 (398)
T ss_pred HHHHHCCCCEEEEECCCCCC------HHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCHHHHHHHHHHHHH-CCCEEEE
T ss_conf 99998499879954564440------3669999999999829976455654321537998899999999987-3987998
Q ss_pred ECCC-CCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 0231-003978861378883113213469999999999999769941897138886531332154577544543679999
Q gi|254781012|r 195 TVHH-LIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNC 273 (349)
Q Consensus 195 TPHH-L~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~ 273 (349)
T Consensus 269 ~p~~~~~l~~~~~----~~~~~~g~~~v---------~~l~~aGv-~v~lGtD~~~~-------~~~p~g~~~~~~~~~~ 327 (398)
T cd01293 269 LPPINLYLQGRED----TTPKRRGVTPV---------KELRAAGV-NVALGSDNVRD-------PWYPFGSGDMLEVANL 327 (398)
T ss_pred CCHHHHHHCCCCC----CCCCCCCCCCH---------HHHHHCCC-EEEECCCCCCC-------CCCCCCCHHHHHHHHH
T ss_conf 7504565344321----34444588889---------99997799-39965888878-------8888886549999999
Q ss_pred HHHHHH--CCCCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCE
Q ss_conf 999972--06999999999824317881889------888528999479717
Q gi|254781012|r 274 LAQIFE--EENKLENLESFVSINGATWYGIP------VNTRKISLKRREQPI 317 (349)
Q Consensus 274 ~~~~~~--~~~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~ 317 (349)
T Consensus 328 ~~~~~~~~~~~~~~~al~~aT~~~A~~lGl~~g~i~~Gk~ADLVv~D~~~~~ 379 (398)
T cd01293 328 AAHIAQLGTPEDLALALDLITGNAARALGLEDYGIKVGCPADLVLLDAEDVA 379 (398)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEECCCHH
T ss_conf 9999589977789999999939999971999820176885648999689989