HHsearch alignment for GI: 254781012 and conserved domain: cd01300
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.18 E-value=7.2e-09 Score=74.27 Aligned_cols=171 Identities=17% Similarity=0.155 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHCCCC
Q ss_conf 1006889999999987398222025755555430014676545789999962069539970578--58999998705733
Q gi|254781012|r 113 IRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHIT--TSNGIDYVNNATNI 190 (349)
Q Consensus 113 v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiS--T~~sv~lir~ak~v 190 (349)
T Consensus 291 ~~~~e~~~~~~~~a~~~g~~v~~Ha~gd----~~~~~~l~~~e~~--~~~~~~~~~r~~i~H~~~~~~~~~~~~~~-~g~ 363 (479)
T cd01300 291 LISPEELEELVRAADEAGLQVAIHAIGD----RAVDTVLDALEAA--LKDNPRADHRHRIEHAQLVSPDDIPRFAK-LGV 363 (479)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCC----HHHHHHHHHHHHH--HHHCCCCCCCEEEHHHCCCCHHHHHHHHH-CCC
T ss_conf 5699999999999998398367852362----7999999999999--98668877750330011379999999997-397
Q ss_pred CEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHH
Q ss_conf 20230231003978861378883113213469999999999999769941897138886531332154577544543679
Q gi|254781012|r 191 AGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNA 270 (349)
Q Consensus 191 taEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~ 270 (349)
T Consensus 364 ~~~~~p~~~~~~~~~~~~~~~-------g~~~-~~~~~p~~~l~~aGv~-v~lgtD~~~~~~~----~-----~~~~~~a 425 (479)
T cd01300 364 IASVQPNHLYSDGDAAEDRRL-------GEER-AKRSYPFRSLLDAGVP-VALGSDAPVAPPD----P-----LLGIWAA 425 (479)
T ss_pred EEEECHHHHHCCCHHHHHHHH-------HHHH-HHCCHHHHHHHHCCCE-EEEECCCCCCCCC----H-----HHHHHHH
T ss_conf 599853776434167665010-------6878-7523799999988995-9982799998878----8-----9999999
Q ss_pred HHHH------HHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCEE
Q ss_conf 9999------9997206999999999824317881889888528
Q gi|254781012|r 271 LNCL------AQIFEEENKLENLESFVSINGATWYGIPVNTRKI 308 (349)
Q Consensus 271 ~~~~------~~~~~~~~~L~~l~~~~s~npa~~~gl~~~~~~i 308 (349)
T Consensus 426 v~~~~~~~~~~~~~~~~lt~~eaL~~aT~~~A~~lg~e~~iGsL 469 (479)
T cd01300 426 VTRKTPGGGVLGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSL 469 (479)
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 84568567746584579999999999999999996878994421