HHsearch alignment for GI: 254781012 and conserved domain: cd01304
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.03 E-value=6.7e-08 Score=68.30 Aligned_cols=203 Identities=15% Similarity=0.133 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHHCCC--CEECCCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHCCCEEEEECCC------------
Q ss_conf 1006889999999987398--2220257555554300146765457899--99962069539970578------------
Q gi|254781012|r 113 IRNIDRVMPVLERMETIGM--PLCIHGEILNQDIDIFDRELMFIDKILD--PLRNKLPNLKIILEHIT------------ 176 (349)
Q Consensus 113 v~~~~~~~~~le~~~~~~~--~i~~H~E~~~~~~~~~~~E~~~~~~~l~--~~~a~~~~~~iHi~HiS------------ 176 (349)
T Consensus 205 vtpr~Ii~~L~~a~e~LglPH~lHvH~nNLG~PGN~~----ttl~T~~~~eg~~~~~r~q~~HltHvQFhsYgg~~~~~f 280 (541)
T cd01304 205 ITPREILKGLAEANEELGLPHSIHVHCNNLGVPGNYE----TTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDF 280 (541)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCCCHH----HHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 6899999999999986599960320123179998726----677644420454456445511342477663267888771
Q ss_pred ---HHHHHHHHHHCCCCCEEE--------E------C--CCCC------CCHHHHH-CCCCCCCEEECCC-CCCHHHHHH
Q ss_conf ---589999987057332023--------0------2--3100------3978861-3788831132134-699999999
Q gi|254781012|r 177 ---TSNGIDYVNNATNIAGSI--------T------V--HHLI------INRNAIF-HDGLNPHYYCLPI-PKREKHRLS 229 (349)
Q Consensus 177 ---T~~sv~lir~ak~vtaEV--------T------P--HHL~------lt~~d~~-~~~~~~~~k~nPP-lR~~~dr~a 229 (349)
T Consensus 281 ~S~a~~iae~vN~~~nvt~DvGqv~fg~T~tmt~D~~~~~~l~~~~~~KW~n~DiE~e~g~G----vvP~~Y~~k~~V~a 356 (541)
T cd01304 281 ESGAERIADYVNANDHVTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSG----VVPFIYSPKNPVNA 356 (541)
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCHHHHHCCCCCCCCEEEECCCCCCCCC----EEEEEECCCCCCHH
T ss_conf 22599999998369987875264045773688525676664023777863645603256775----57788647775049
Q ss_pred HHHHHHCC-------CCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHH----------------------HHHC
Q ss_conf 99999769-------941897138886531332154577544543679999999----------------------9720
Q gi|254781012|r 230 LRKAALSG-------NPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQ----------------------IFEE 280 (349)
Q Consensus 230 L~~ai~~G-------~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~----------------------~~~~ 280 (349)
T Consensus 357 lQWAIGLElfLl~~DPwrv~lTTDh----------PNgg-pFt~YP~li~lLMs~~~R~~~l~~~~~~~~~~s~L~~idR 425 (541)
T cd01304 357 LQWAIGLELFLLIDDPWKVILTTDH----------PNGG-PFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPGIDR 425 (541)
T ss_pred HHHHHHHHHHHCCCCCHHEEEECCC----------CCCC-CCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCCCCC
T ss_conf 9998615887545883014650469----------9988-5521588999963989999999865998985056555542
Q ss_pred CCCHHHHHHHHHHCCHHHCCCCC-------CCCEEEEEECCCCEEE-----CHHHCCCCCCEEECC
Q ss_conf 69999999998243178818898-------8852899947971784-----711226777714657
Q gi|254781012|r 281 ENKLENLESFVSINGATWYGIPV-------NTRKISLKRREQPIIF-----DEKITTSTGSITIFN 334 (349)
Q Consensus 281 ~~~L~~l~~~~s~npa~~~gl~~-------~~~~i~l~d~~~~~~v-----~~~~~~sk~~~tpF~ 334 (349)
T Consensus 426 EysL~EiA~mTRA~pAk~LGL~~kGhLg~GAdADIaIYd~~~d~~d~~~~~~~e~~F~~~~yv~K~ 491 (541)
T cd01304 426 EYSLYEIAIMTRAGPAKLLGLSDKGHLGVGADADIAIYDDDPDQVDPSDYEKVEKAFSRAAYVLKD 491 (541)
T ss_pred CCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEC
T ss_conf 012999999970323766097657887888647678855883325765679999997287569888