HHsearch alignment for GI: 254781012 and conserved domain: cd01309
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.28 E-value=6.8e-10 Score=80.63 Aligned_cols=144 Identities=15% Similarity=0.052 Sum_probs=71.6
Q ss_pred EEECCCHHHHHH-HHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHH----H---HHHHCCC
Q ss_conf 970578589999-987057----332023023100397886137888311321346999999999----9---9997699
Q gi|254781012|r 171 ILEHITTSNGID-YVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSL----R---KAALSGN 238 (349)
Q Consensus 171 Hi~HiST~~sv~-lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL----~---~ai~~G~ 238 (349)
T Consensus 195 ~~~h~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (359)
T cd01309 195 VRIHAHRADDILTAIRIAKEFGIKITIEHGAEGY-KLADELAK--HGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKKGG 271 (359)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHHHH--CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999676789999999998649847997330187-79999997--49968968420133113655400455899998199
Q ss_pred CEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCC--------CCCEEEE
Q ss_conf 41897138886531332154577544543679999999972069999999998243178818898--------8852899
Q gi|254781012|r 239 PRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIPV--------NTRKISL 310 (349)
Q Consensus 239 i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~~--------~~~~i~l 310 (349)
T Consensus 272 v~~~~~tD~~~-~~~--------------~~~~~~~~~~~~~Gl~~~eal~~aT~n~A~~lgl~~~~Gsie~Gk~ADlVv 336 (359)
T cd01309 272 VAFAISSDHPV-LNI--------------RNLNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVV 336 (359)
T ss_pred CEEEEECCCCC-CHH--------------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEE
T ss_conf 54999668875-417--------------599999999998099999999999999999949989850007888376899
Q ss_pred EECCCCEEECHHHCCCCCCEEECCCCEEE
Q ss_conf 94797178471122677771465797698
Q gi|254781012|r 311 KRREQPIIFDEKITTSTGSITIFNPIFPL 339 (349)
Q Consensus 311 ~d~~~~~~v~~~~~~sk~~~tpF~~g~~l 339 (349)
T Consensus 337 vd~d-PL~-----~~~~v~~v~~~-Gr~v 358 (359)
T cd01309 337 WNGD-PLE-----PTSKPEQVYID-GRLV 358 (359)
T ss_pred ECCC-CCC-----CHHHHHEEEEC-CEEE
T ss_conf 8999-666-----50122614679-9994