HHsearch alignment for GI: 254781012 and conserved domain: cd01316

>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=100.00  E-value=0  Score=517.64  Aligned_cols=312  Identities=18%  Similarity=0.176  Sum_probs=244.3

Q ss_pred             CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf             65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r    2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI   75 (349)
Q Consensus         2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~   75 (349)
T Consensus         1 ~~lvlPG~iD~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~----~d~~~~~   76 (344)
T cd01316           1 RTIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKAR----CDYAFSI   76 (344)
T ss_pred             CEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC----CCEEEEE
T ss_conf             969826888005777999987746499999999847977997799998997999999999997431773----2112688


Q ss_pred             EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             52789998899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r   76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID  155 (349)
Q Consensus        76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~  155 (349)
T Consensus        77 ~~~~~~~-~~l~~l~~~--~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~pi~~~aE~~--------------~  136 (344)
T cd01316          77 GATSTNA-ATVGELASE--AVGLKFYLNETF--STLILDKITAWASHFNA-WPSTKPIVTHAKSQ--------------T  136 (344)
T ss_pred             EECCCCH-HHHHHHHHC--CCCEEEEECCCC--CHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHH--------------H
T ss_conf             8526767-899998754--683899963556--35777799999999863-64569731422389--------------9


Q ss_pred             HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf             789999962069539970578589999987057----3320230231003978861378883113213469999999999
Q gi|254781012|r  156 KILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLR  231 (349)
Q Consensus       156 ~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~  231 (349)
T Consensus       137 ~~~~l~la~~~~~~lHi~HiSt~~~v~lI~~ak~~G~~Vt~Et~ph~L~l~~~~~~----~~~~k~~PPLR~~~d~~aL~  212 (344)
T cd01316         137 LAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLP----RGQYEVRPFLPTREDQEALW  212 (344)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHH----CCCCCCCCCCCCHHHHHHHH
T ss_conf             99999999987998999946887799999999872897478634554208775763----35987288999978999999


Q ss_pred             HHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEE
Q ss_conf             9997699418971388865313321545775445436799999999-720699999999982431788188988852899
Q gi|254781012|r  232 KAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQI-FEEENKLENLESFVSINGATWYGIPVNTRKISL  310 (349)
Q Consensus       232 ~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~-~~~~~~L~~l~~~~s~npa~~~gl~~~~~~i~l  310 (349)
T Consensus       213 ~~l--~~I-D~IaSDHaP~~~~~K~~~~~~~G~~GlEt~lp~~~~~v~~g~lsl~~lv~~~s~nPAki~gl~~~~g~~v~  289 (344)
T cd01316         213 ENL--DYI-DCFATDHAPHTLAEKTGNKPPPGFPGVETSLPLLLTAVHEGRLTIEDIVDRLHTNPKRIFNLPPQSDTYVE  289 (344)
T ss_pred             HHH--HCC-CEEECCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             754--227-78971677657655022469998562776899999999839978999999994989997288988898899


Q ss_pred             EECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf             94797178471122677771465797698338887
Q gi|254781012|r  311 KRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML  345 (349)
Q Consensus       311 ~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~  345 (349)
T Consensus       290 vD~~~~~~i~~~~~~Sk~~~spfe-G~~l~G~v~~  323 (344)
T cd01316         290 VDLDEEWTIPKNPLQSKKGWTPFE-GKKVKGKVQR  323 (344)
T ss_pred             ECCCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf             879997898814272758867745-9888889999