HHsearch alignment for GI: 254781012 and conserved domain: cd01316
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=100.00 E-value=0 Score=517.64 Aligned_cols=312 Identities=18% Similarity=0.176 Sum_probs=244.3
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
T Consensus 1 ~~lvlPG~iD~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~----~d~~~~~ 76 (344)
T cd01316 1 RTIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKAR----CDYAFSI 76 (344)
T ss_pred CEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC----CCEEEEE
T ss_conf 969826888005777999987746499999999847977997799998997999999999997431773----2112688
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 52789998899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
T Consensus 77 ~~~~~~~-~~l~~l~~~--~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~pi~~~aE~~--------------~ 136 (344)
T cd01316 77 GATSTNA-ATVGELASE--AVGLKFYLNETF--STLILDKITAWASHFNA-WPSTKPIVTHAKSQ--------------T 136 (344)
T ss_pred EECCCCH-HHHHHHHHC--CCCEEEEECCCC--CHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHH--------------H
T ss_conf 8526767-899998754--683899963556--35777799999999863-64569731422389--------------9
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf 789999962069539970578589999987057----3320230231003978861378883113213469999999999
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLR 231 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~ 231 (349)
T Consensus 137 ~~~~l~la~~~~~~lHi~HiSt~~~v~lI~~ak~~G~~Vt~Et~ph~L~l~~~~~~----~~~~k~~PPLR~~~d~~aL~ 212 (344)
T cd01316 137 LAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLP----RGQYEVRPFLPTREDQEALW 212 (344)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHH----CCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999987998999946887799999999872897478634554208775763----35987288999978999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEE
Q ss_conf 9997699418971388865313321545775445436799999999-720699999999982431788188988852899
Q gi|254781012|r 232 KAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQI-FEEENKLENLESFVSINGATWYGIPVNTRKISL 310 (349)
Q Consensus 232 ~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~-~~~~~~L~~l~~~~s~npa~~~gl~~~~~~i~l 310 (349)
T Consensus 213 ~~l--~~I-D~IaSDHaP~~~~~K~~~~~~~G~~GlEt~lp~~~~~v~~g~lsl~~lv~~~s~nPAki~gl~~~~g~~v~ 289 (344)
T cd01316 213 ENL--DYI-DCFATDHAPHTLAEKTGNKPPPGFPGVETSLPLLLTAVHEGRLTIEDIVDRLHTNPKRIFNLPPQSDTYVE 289 (344)
T ss_pred HHH--HCC-CEEECCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 754--227-78971677657655022469998562776899999999839978999999994989997288988898899
Q ss_pred EECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 94797178471122677771465797698338887
Q gi|254781012|r 311 KRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 311 ~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
T Consensus 290 vD~~~~~~i~~~~~~Sk~~~spfe-G~~l~G~v~~ 323 (344)
T cd01316 290 VDLDEEWTIPKNPLQSKKGWTPFE-GKKVKGKVQR 323 (344)
T ss_pred ECCCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 879997898814272758867745-9888889999