HHsearch alignment for GI: 254781012 and conserved domain: cd01317
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=100.00 E-value=0 Score=491.97 Aligned_cols=330 Identities=21% Similarity=0.209 Sum_probs=267.0
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
T Consensus 9 G~~v~PG~ID~H~H~~~pg~~~~e~~~t~t~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 84 (374)
T cd01317 9 GKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVG----IVRVLPIG 84 (374)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCC----CCCEEEEE
T ss_conf 99991486854503599997651449999999983995899978899999897999999999703458----83047899
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC----------
Q ss_conf 5278999889987440687210221045510025654100688999999998739822202575555543----------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID---------- 145 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~---------- 145 (349)
T Consensus 85 ~~~~~~~~~~l~~~~~l~~~G~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~~~~~~ 158 (374)
T cd01317 85 ALTKGLKGEELTEIGELLEAGAV------GFSDDGKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVAS 158 (374)
T ss_pred EEECCCCHHHHHHHHHHHHCCCE------EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCHH
T ss_conf 84548633255657889860854------673499634579999999998875498599937986786546650586315
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf -----0014676545789999962069539970578589999987057----3320230231003978861378883113
Q gi|254781012|r 146 -----IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYY 216 (349)
Q Consensus 146 -----~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k 216 (349)
T Consensus 159 ~~~~~~~p~~~E~~ai~~~~~la~~~g~~vhi~Hiss~~~l~li~~ar~~G~~vt~e~~p~~L~~~~~~~~~--~~~~~k 236 (374)
T cd01317 159 RLGLPGIPPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALES--YDTNAK 236 (374)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHC--CCCCCC
T ss_conf 208999999999999999999999729848973435588999999998748977999725653588878606--676524
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHHH-HH-CCCCHHHHHHHHH
Q ss_conf 2134699999999999997699418971388865313321545--775445436799999999-72-0699999999982
Q gi|254781012|r 217 CLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQI-FE-EENKLENLESFVS 292 (349)
Q Consensus 217 ~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~~-~~-~~~~L~~l~~~~s 292 (349)
T Consensus 237 ~~PPlr~~~d~~~L~~~l~~g~i-d~i~sDH~p~~~~~k~~~~~~a~~G~~g~e~~lp~l~~~~v~~~~lsle~~v~~~s 315 (374)
T cd01317 237 VNPPLRSEEDREALIEALKDGTI-DAIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALS 315 (374)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 68987855679999999973993-49996898888777457765477678650046999999999859999999999997
Q ss_pred HCCHHHCCCCC------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 43178818898------885289994797178471122677771465797698338887
Q gi|254781012|r 293 INGATWYGIPV------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 293 ~npa~~~gl~~------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
T Consensus 316 ~nPAk~lgl~~G~i~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~e-G~~~~G~v~~ 373 (374)
T cd01317 316 TNPAKILGLPPGRLEVGAPADLVLFDPDAEWIVDEETFRSKSKNTPFD-GQKLKGRVLA 373 (374)
T ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 999999699968647998478899959998898835571758867845-9888789967