HHsearch alignment for GI: 254781012 and conserved domain: cd01317

>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=100.00  E-value=0  Score=491.97  Aligned_cols=330  Identities=21%  Similarity=0.209  Sum_probs=267.0

Q ss_pred             CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf             65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r    2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI   75 (349)
Q Consensus         2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~   75 (349)
T Consensus         9 G~~v~PG~ID~H~H~~~pg~~~~e~~~t~t~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~   84 (374)
T cd01317           9 GKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVG----IVRVLPIG   84 (374)
T ss_pred             CCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCC----CCCEEEEE
T ss_conf             99991486854503599997651449999999983995899978899999897999999999703458----83047899


Q ss_pred             EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC----------
Q ss_conf             5278999889987440687210221045510025654100688999999998739822202575555543----------
Q gi|254781012|r   76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID----------  145 (349)
Q Consensus        76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~----------  145 (349)
T Consensus        85 ~~~~~~~~~~l~~~~~l~~~G~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~~~~~~  158 (374)
T cd01317          85 ALTKGLKGEELTEIGELLEAGAV------GFSDDGKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVAS  158 (374)
T ss_pred             EEECCCCHHHHHHHHHHHHCCCE------EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCHH
T ss_conf             84548633255657889860854------673499634579999999998875498599937986786546650586315


Q ss_pred             -----CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf             -----0014676545789999962069539970578589999987057----3320230231003978861378883113
Q gi|254781012|r  146 -----IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYY  216 (349)
Q Consensus       146 -----~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k  216 (349)
T Consensus       159 ~~~~~~~p~~~E~~ai~~~~~la~~~g~~vhi~Hiss~~~l~li~~ar~~G~~vt~e~~p~~L~~~~~~~~~--~~~~~k  236 (374)
T cd01317         159 RLGLPGIPPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALES--YDTNAK  236 (374)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHC--CCCCCC
T ss_conf             208999999999999999999999729848973435588999999998748977999725653588878606--676524


Q ss_pred             ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHHH-HH-CCCCHHHHHHHHH
Q ss_conf             2134699999999999997699418971388865313321545--775445436799999999-72-0699999999982
Q gi|254781012|r  217 CLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQI-FE-EENKLENLESFVS  292 (349)
Q Consensus       217 ~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~~-~~-~~~~L~~l~~~~s  292 (349)
T Consensus       237 ~~PPlr~~~d~~~L~~~l~~g~i-d~i~sDH~p~~~~~k~~~~~~a~~G~~g~e~~lp~l~~~~v~~~~lsle~~v~~~s  315 (374)
T cd01317         237 VNPPLRSEEDREALIEALKDGTI-DAIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALS  315 (374)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             68987855679999999973993-49996898888777457765477678650046999999999859999999999997


Q ss_pred             HCCHHHCCCCC------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf             43178818898------885289994797178471122677771465797698338887
Q gi|254781012|r  293 INGATWYGIPV------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML  345 (349)
Q Consensus       293 ~npa~~~gl~~------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~  345 (349)
T Consensus       316 ~nPAk~lgl~~G~i~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~e-G~~~~G~v~~  373 (374)
T cd01317         316 TNPAKILGLPPGRLEVGAPADLVLFDPDAEWIVDEETFRSKSKNTPFD-GQKLKGRVLA  373 (374)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf             999999699968647998478899959998898835571758867845-9888789967