Query gi|254781012|ref|YP_003065425.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 349
No_of_seqs 174 out of 1777
Neff 8.3
Searched_HMMs 39220
Date Mon May 30 03:20:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781012.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01294 DHOase Dihydroorotase 100.0 0 0 680.6 32.2 334 4-341 1-335 (335)
2 PRK05451 dihydroorotase; Provi 100.0 0 0 622.5 33.4 342 1-344 2-344 (345)
3 TIGR00857 pyrC_multi dihydroor 100.0 0 0 631.4 25.9 337 3-345 41-447 (459)
4 PRK07369 dihydroorotase; Provi 100.0 0 0 567.1 29.3 330 2-345 52-416 (419)
5 COG0044 PyrC Dihydroorotase an 100.0 0 0 556.1 30.4 327 3-345 49-411 (430)
6 PRK09060 dihydroorotase; Valid 100.0 0 0 557.0 29.5 331 2-345 51-413 (444)
7 cd01302 Cyclic_amidohydrolases 100.0 0 0 547.9 29.1 312 4-345 2-336 (337)
8 cd01318 DHOase_IIb Dihydroorot 100.0 0 0 540.5 31.8 325 3-345 2-356 (361)
9 PRK09059 dihydroorotase; Valid 100.0 0 0 543.0 27.5 330 2-345 55-418 (429)
10 PRK08417 dihydroorotase; Provi 100.0 0 0 527.1 30.6 318 2-345 25-376 (387)
11 PRK08044 allantoinase; Provisi 100.0 0 0 526.7 30.5 334 2-345 48-424 (449)
12 PRK07575 dihydroorotase; Provi 100.0 0 0 523.0 28.5 327 2-345 50-410 (439)
13 COG0418 PyrC Dihydroorotase [N 100.0 0 0 520.4 29.5 342 1-344 2-344 (344)
14 PRK04250 dihydroorotase; Provi 100.0 0 0 519.7 29.7 317 2-345 47-380 (408)
15 cd01316 CAD_DHOase The eukaryo 100.0 0 0 517.6 24.2 312 2-345 1-323 (344)
16 PRK07627 dihydroorotase; Provi 100.0 0 0 509.7 27.5 330 2-345 50-413 (425)
17 PRK02382 dihydroorotase; Provi 100.0 0 0 502.6 30.4 328 2-344 48-407 (440)
18 PRK13404 dihydropyrimidinase; 100.0 0 0 502.6 28.2 332 2-345 49-435 (476)
19 TIGR00856 pyrC_dimer dihydroor 100.0 0 0 508.1 22.1 340 3-344 1-364 (364)
20 PRK09236 dihydroorotase; Revie 100.0 0 0 499.0 28.9 329 2-345 49-417 (444)
21 PRK00369 pyrC dihydroorotase; 100.0 0 0 502.7 25.2 305 3-345 44-364 (393)
22 cd01317 DHOase_IIa Dihydroorot 100.0 0 0 492.0 28.6 330 2-345 9-373 (374)
23 PRK01211 dihydroorotase; Provi 100.0 0 0 495.2 25.1 311 3-343 44-382 (413)
24 PRK08323 dihydropyrimidinase; 100.0 0 0 475.1 29.1 333 3-345 48-430 (463)
25 PRK09357 pyrC dihydroorotase; 100.0 0 0 468.6 28.2 328 2-345 50-414 (425)
26 PRK06189 allantoinase; Provisi 100.0 0 0 449.2 29.5 332 3-345 50-421 (433)
27 TIGR03178 allantoinase allanto 100.0 0 0 431.4 28.2 332 3-345 47-418 (442)
28 TIGR02033 D-hydantoinase dihyd 100.0 0 0 424.0 22.0 333 3-345 50-440 (466)
29 KOG2902 consensus 100.0 0 0 421.1 22.4 334 2-344 3-343 (344)
30 cd01315 L-HYD_ALN L-Hydantoina 100.0 0 0 409.2 28.3 333 2-345 47-423 (447)
31 cd01314 D-HYD D-hydantoinases 100.0 0 0 405.1 29.1 333 2-345 46-426 (447)
32 KOG2584 consensus 100.0 2.8E-45 0 299.5 16.2 333 2-344 61-443 (522)
33 PRK09061 D-glutamate deacylase 100.0 8.8E-30 2.2E-34 203.7 20.1 295 2-315 51-447 (496)
34 cd01308 Isoaspartyl-dipeptidas 99.9 4.4E-23 1.1E-27 162.2 22.6 285 3-331 50-374 (387)
35 PRK10657 isoaspartyl dipeptida 99.9 4.1E-22 1.1E-26 156.2 20.5 292 2-340 50-379 (384)
36 cd01307 Met_dep_hydrolase_B Me 99.9 9.3E-20 2.4E-24 141.6 20.4 271 3-332 30-331 (338)
37 PRK12394 putative metallo-depe 99.8 3.6E-19 9.2E-24 138.0 9.9 279 3-333 53-363 (387)
38 PRK09237 dihydroorotase; Provi 99.8 2.3E-18 5.8E-23 133.1 12.9 291 2-345 52-372 (384)
39 TIGR03583 EF_0837 probable ami 99.8 1.5E-17 3.7E-22 128.1 15.3 104 219-323 215-342 (365)
40 cd01297 D-aminoacylase D-amino 99.7 1.2E-14 3E-19 110.1 18.7 188 117-348 199-406 (415)
41 pfam01979 Amidohydro_1 Amidohy 99.7 9E-15 2.3E-19 110.8 15.9 281 4-312 1-307 (307)
42 cd01298 ATZ_TRZ_like TRZ/ATZ f 99.6 1.5E-13 3.8E-18 103.3 18.2 108 230-347 286-407 (411)
43 cd00854 NagA N-acetylglucosami 99.6 1.2E-13 3.1E-18 103.8 12.8 51 2-52 46-105 (374)
44 cd01293 Bact_CD Bacterial cyto 99.5 4.5E-11 1.1E-15 87.9 22.7 280 2-317 44-379 (398)
45 cd01292 metallo-dependent_hydr 99.4 8.9E-11 2.3E-15 86.1 15.4 242 9-298 1-275 (275)
46 PRK07228 N-ethylammeline chlor 99.4 3.7E-10 9.5E-15 82.2 18.4 82 230-320 291-383 (445)
47 cd01309 Met_dep_hydrolase_C Me 99.3 6.8E-10 1.7E-14 80.6 16.3 144 171-339 195-358 (359)
48 cd01296 Imidazolone-5PH Imidaz 99.3 1.3E-09 3.2E-14 79.0 17.3 155 111-315 187-351 (371)
49 cd01295 AdeC Adenine deaminase 99.3 6.1E-10 1.6E-14 80.9 15.2 259 2-319 4-279 (422)
50 PRK08393 N-ethylammeline chlor 99.3 1.5E-09 3.9E-14 78.5 16.9 197 115-348 185-400 (419)
51 cd01299 Met_dep_hydrolase_A Me 99.3 7.5E-10 1.9E-14 80.4 15.3 165 115-314 158-334 (342)
52 PRK06380 metal-dependent hydro 99.2 7.7E-09 2E-13 74.1 20.4 199 113-348 182-402 (418)
53 PRK09356 imidazolonepropionase 99.2 3E-09 7.6E-14 76.7 17.7 156 112-316 216-381 (401)
54 cd01300 YtcJ_like YtcJ_like me 99.2 7.2E-09 1.8E-13 74.3 17.6 171 113-308 291-469 (479)
55 PRK08204 hypothetical protein; 99.2 5.5E-09 1.4E-13 75.0 15.9 201 114-348 200-421 (451)
56 PRK06151 N-ethylammeline chlor 99.1 1.7E-07 4.5E-12 65.7 20.6 195 114-348 218-432 (480)
57 PRK07583 cytosine deaminase; V 99.1 2.8E-07 7.2E-12 64.4 21.2 276 2-315 70-400 (437)
58 PRK07572 cytosine deaminase; V 99.0 9.3E-07 2.4E-11 61.2 23.3 279 2-317 45-380 (425)
59 PRK09230 cytosine deaminase; P 99.0 4E-07 1E-11 63.5 21.3 279 2-316 50-384 (426)
60 cd01304 FMDH_A Formylmethanofu 99.0 6.7E-08 1.7E-12 68.3 17.1 203 113-334 205-491 (541)
61 TIGR01975 isoAsp_dipep beta-as 99.0 8.7E-09 2.2E-13 73.8 11.8 295 3-334 52-381 (391)
62 TIGR03121 one_C_dehyd_A formyl 99.0 3.4E-08 8.7E-13 70.1 14.6 201 112-337 208-495 (556)
63 PRK07213 chlorohydrolase; Prov 99.0 6.5E-07 1.7E-11 62.2 20.7 162 115-316 179-349 (378)
64 PRK12393 amidohydrolase; Provi 99.0 4.1E-07 1E-11 63.4 19.6 173 115-321 218-403 (459)
65 cd01303 GDEase Guanine deamina 98.9 8.1E-08 2.1E-12 67.8 14.6 172 115-319 206-396 (429)
66 cd01312 Met_dep_hydrolase_D Me 98.9 1.2E-06 3E-11 60.6 19.9 170 115-318 161-358 (381)
67 COG1228 HutI Imidazolonepropio 98.9 2.2E-06 5.5E-11 59.0 20.8 98 227-340 296-401 (406)
68 PRK09045 N-ethylammeline chlor 98.9 9.8E-07 2.5E-11 61.1 18.8 172 115-321 201-388 (444)
69 PRK09229 N-formimino-L-glutama 98.9 7.4E-07 1.9E-11 61.8 17.6 166 114-318 213-400 (457)
70 PRK05985 cytosine deaminase; P 98.9 6E-06 1.5E-10 56.2 22.0 294 2-348 47-392 (398)
71 cd01313 Met_dep_hydrolase_E Me 98.9 1.1E-06 2.9E-11 60.7 18.2 37 283-319 348-390 (418)
72 PRK09228 guanine deaminase; Pr 98.9 1.8E-06 4.7E-11 59.4 19.0 73 230-315 305-388 (429)
73 PRK08203 hydroxydechloroatrazi 98.9 1.9E-06 4.9E-11 59.3 19.1 197 115-348 216-430 (456)
74 PRK06038 N-ethylammeline chlor 98.8 1.2E-06 3.1E-11 60.5 17.1 40 282-321 330-375 (432)
75 pfam07969 Amidohydro_3 Amidohy 98.8 6.1E-08 1.5E-12 68.6 10.4 165 113-308 209-382 (392)
76 TIGR03179 gua_deam guanine dea 98.8 4.7E-07 1.2E-11 63.1 14.3 74 230-316 304-388 (427)
77 PRK08418 chlorohydrolase; Prov 98.8 3.6E-06 9.2E-11 57.6 18.5 165 115-317 188-380 (407)
78 PRK06886 hypothetical protein; 98.8 4.6E-06 1.2E-10 56.9 18.8 263 4-302 17-328 (328)
79 COG1001 AdeC Adenine deaminase 98.7 1.4E-05 3.6E-10 53.9 20.1 272 2-334 72-360 (584)
80 PRK06687 chlorohydrolase; Vali 98.7 4.6E-06 1.2E-10 56.9 16.7 171 115-320 194-380 (422)
81 PRK07203 putative chlorohydrol 98.7 3.2E-06 8.1E-11 57.9 15.3 171 115-322 203-388 (442)
82 TIGR03314 Se_ssnA putative sel 98.6 6.4E-06 1.6E-10 56.1 16.3 169 115-321 202-386 (441)
83 COG1574 Predicted metal-depend 98.5 6.7E-06 1.7E-10 55.9 13.9 273 28-341 219-533 (535)
84 pfam04909 Amidohydro_2 Amidohy 98.5 0.00012 3.1E-09 48.1 21.0 179 84-301 87-270 (270)
85 cd01306 PhnM PhnM is believed 98.4 4.7E-05 1.2E-09 50.7 15.1 75 225-317 234-315 (325)
86 COG3964 Predicted amidohydrola 98.3 8.5E-06 2.2E-10 55.3 10.4 264 4-315 54-340 (386)
87 COG0402 SsnA Cytosine deaminas 98.3 0.00017 4.2E-09 47.3 17.0 173 115-322 196-383 (421)
88 PRK13309 ureC urease subunit a 98.2 0.00021 5.4E-09 46.7 15.3 261 3-314 129-443 (572)
89 cd01310 TatD_DNAse TatD like p 98.2 0.00051 1.3E-08 44.3 18.9 234 9-300 1-251 (251)
90 PRK10027 cryptic adenine deami 98.2 0.00053 1.3E-08 44.2 18.6 254 2-319 79-354 (588)
91 TIGR02967 guan_deamin guanine 98.2 0.00031 8E-09 45.6 15.8 34 282-315 345-388 (426)
92 PRK10425 DNase TatD; Provision 98.2 0.00055 1.4E-08 44.1 19.7 243 9-301 1-258 (258)
93 PRK06846 deaminase; Validated 98.2 0.00059 1.5E-08 43.9 22.9 289 2-343 62-407 (410)
94 PRK10812 putative metallodepen 98.1 0.00077 2E-08 43.2 20.4 239 9-305 3-260 (265)
95 cd00375 Urease_alpha Urease al 98.1 0.00031 8E-09 45.6 14.1 261 3-314 125-439 (567)
96 PRK13206 ureC urease subunit a 98.1 0.00049 1.2E-08 44.4 15.0 261 3-314 131-444 (573)
97 pfam01026 TatD_DNase TatD rela 98.1 0.00099 2.5E-08 42.5 19.7 232 10-300 1-255 (255)
98 COG3653 N-acyl-D-aspartate/D-g 98.0 0.00034 8.7E-09 45.4 13.5 56 2-58 56-114 (579)
99 COG2159 Predicted metal-depend 98.0 0.0011 2.9E-08 42.1 16.8 172 82-303 114-292 (293)
100 PRK13207 ureC urease subunit a 98.0 0.001 2.6E-08 42.4 14.9 261 3-314 125-439 (568)
101 PRK13985 UreB urease subunit b 97.8 0.0025 6.4E-08 40.0 15.6 263 3-315 125-440 (568)
102 PRK13308 ureC urease subunit a 97.8 0.0014 3.6E-08 41.5 13.5 262 3-314 129-440 (569)
103 TIGR01792 urease_alph urease, 97.8 0.00024 6E-09 46.3 8.6 264 3-314 133-449 (605)
104 KOG3968 consensus 97.7 0.0046 1.2E-07 38.3 14.9 114 170-316 277-400 (439)
105 PRK11449 putative deoxyribonuc 97.5 0.0078 2E-07 36.9 20.3 235 8-301 4-258 (258)
106 TIGR00010 TIGR00010 hydrolase, 97.3 0.0023 5.8E-08 40.3 8.6 243 9-301 1-269 (269)
107 PRK11170 nagA N-acetylglucosam 97.2 0.019 4.7E-07 34.6 19.8 37 279-315 323-367 (381)
108 PRK09875 putative hydrolase; P 97.1 0.022 5.6E-07 34.2 16.5 251 8-299 7-291 (292)
109 COG1099 Predicted metal-depend 96.8 0.041 1.1E-06 32.5 11.4 237 9-302 2-254 (254)
110 COG0804 UreC Urea amidohydrola 96.7 0.049 1.2E-06 32.0 15.4 263 3-314 125-439 (568)
111 COG0084 TatD Mg-dependent DNas 96.7 0.051 1.3E-06 31.9 18.1 234 8-301 2-256 (256)
112 TIGR02318 phosphono_phnM phosp 96.7 0.0061 1.6E-07 37.6 6.2 280 3-315 49-375 (391)
113 cd01305 archeal_chlorohydrolas 96.3 0.046 1.2E-06 32.2 8.7 138 117-298 125-263 (263)
114 pfam02126 PTE Phosphotriestera 96.2 0.092 2.4E-06 30.3 16.8 244 23-299 42-307 (308)
115 cd00530 PTE Phosphotriesterase 95.1 0.26 6.7E-06 27.5 15.6 242 21-299 34-293 (293)
116 COG3454 Metal-dependent hydrol 95.0 0.14 3.6E-06 29.2 7.2 76 226-318 282-364 (377)
117 cd00443 ADA_AMPD Adenosine/AMP 92.7 0.76 1.9E-05 24.7 11.6 140 115-299 151-291 (305)
118 cd00950 DHDPS Dihydrodipicolin 91.6 1 2.6E-05 23.9 6.9 15 174-188 78-92 (284)
119 COG4464 CapC Capsular polysacc 91.2 1.1 2.8E-05 23.6 10.1 124 9-139 1-139 (254)
120 cd00408 DHDPS-like Dihydrodipi 91.1 1.1 2.9E-05 23.6 7.4 18 173-190 74-91 (281)
121 PRK03170 dihydrodipicolinate s 90.5 1.3 3.3E-05 23.2 7.0 22 171-192 76-97 (292)
122 TIGR02318 phosphono_phnM phosp 89.3 0.16 4.1E-06 28.8 1.2 17 169-185 139-156 (391)
123 COG3618 Predicted metal-depend 88.7 1.8 4.5E-05 22.4 20.1 239 6-301 6-278 (279)
124 COG1820 NagA N-acetylglucosami 88.0 1 2.6E-05 23.8 4.6 40 278-317 321-368 (380)
125 cd01320 ADA Adenosine deaminas 84.7 2.9 7.5E-05 21.0 15.4 216 28-297 82-309 (325)
126 PRK09358 adenosine deaminase; 83.7 3.2 8.3E-05 20.7 11.1 220 28-296 86-312 (333)
127 COG1831 Predicted metal-depend 78.5 4.9 0.00012 19.6 18.0 171 115-302 102-283 (285)
128 PRK06361 hypothetical protein; 78.3 5 0.00013 19.6 14.4 64 222-301 151-215 (216)
129 TIGR01430 aden_deam adenosine 78.2 5 0.00013 19.6 6.7 158 56-247 124-293 (346)
130 cd00954 NAL N-Acetylneuraminic 76.9 5.5 0.00014 19.4 7.5 12 31-42 34-45 (288)
131 TIGR03249 KdgD 5-dehydro-4-deo 74.9 6.2 0.00016 19.0 6.5 15 28-42 35-49 (296)
132 cd00952 CHBPH_aldolase Trans-o 72.8 6.9 0.00018 18.7 7.1 14 29-42 39-52 (309)
133 PRK10689 transcription-repair 72.2 7.2 0.00018 18.6 4.6 46 197-245 665-710 (1148)
134 PRK04147 N-acetylneuraminate l 71.9 7.3 0.00019 18.6 7.0 12 31-42 37-48 (294)
135 TIGR01178 ade adenine deaminas 70.7 7.8 0.0002 18.4 4.3 56 2-57 56-113 (575)
136 TIGR02858 spore_III_AA stage I 63.6 8.1 0.00021 18.3 3.1 61 196-258 178-250 (282)
137 cd01311 PDC_hydrolase 2-pyrone 61.5 12 0.0003 17.3 20.2 231 8-298 1-263 (263)
138 TIGR01369 CPSaseII_lrg carbamo 60.7 12 0.00031 17.2 7.1 111 19-138 24-170 (1089)
139 CHL00149 odpA pyruvate dehydro 60.7 8.7 0.00022 18.1 2.9 85 108-194 165-258 (343)
140 pfam00962 A_deaminase Adenosin 60.5 12 0.00031 17.2 9.5 143 115-301 176-318 (329)
141 COG1229 FwdA Formylmethanofura 60.2 11 0.00029 17.4 3.4 54 280-334 436-504 (575)
142 pfam11243 DUF3045 Protein of u 57.6 2.5 6.4E-05 21.4 -0.3 36 209-247 19-54 (90)
143 TIGR01124 ilvA_2Cterm threonin 57.0 7.8 0.0002 18.4 2.1 26 212-237 366-392 (508)
144 TIGR00195 exoDNase_III exodeox 55.7 4.3 0.00011 20.0 0.6 54 189-251 215-278 (281)
145 TIGR00580 mfd transcription-re 54.4 15 0.00039 16.6 4.5 71 174-247 544-624 (997)
146 COG2384 Predicted SAM-dependen 53.6 8.8 0.00022 18.1 1.9 14 169-182 115-128 (226)
147 PRK03620 5-dehydro-4-deoxygluc 53.0 16 0.00041 16.4 7.1 51 22-72 25-76 (296)
148 COG1735 Php Predicted metal-de 52.4 17 0.00042 16.4 15.5 155 118-301 153-314 (316)
149 cd00951 KDGDH 5-dehydro-4-deox 51.4 17 0.00044 16.3 7.2 16 27-42 29-44 (289)
150 pfam03786 UxuA D-mannonate deh 50.1 18 0.00046 16.1 7.7 130 120-256 189-324 (350)
151 TIGR01139 cysK cysteine syntha 48.9 10 0.00027 17.6 1.7 17 27-43 77-93 (312)
152 PRK04149 sat sulfate adenylylt 47.6 17 0.00044 16.2 2.7 29 220-248 259-290 (390)
153 COG0329 DapA Dihydrodipicolina 47.5 20 0.00051 15.9 8.3 36 170-205 78-117 (299)
154 KOG0336 consensus 46.1 18 0.00046 16.1 2.6 52 192-248 474-525 (629)
155 TIGR00633 xth exodeoxyribonucl 43.6 11 0.00028 17.5 1.1 47 197-252 220-276 (279)
156 COG1197 Mfd Transcription-repa 43.1 23 0.00059 15.5 5.3 64 179-245 635-704 (1139)
157 TIGR01136 cysKM cysteine synth 42.5 18 0.00045 16.2 2.0 18 26-43 79-96 (315)
158 cd02000 TPP_E1_PDC_ADC_BCADC T 42.2 24 0.00061 15.4 5.5 85 108-194 132-225 (293)
159 TIGR02069 cyanophycinase cyano 40.5 25 0.00065 15.2 3.8 83 223-306 127-233 (297)
160 PRK13352 thiamine biosynthesis 38.6 27 0.00069 15.0 7.2 34 174-207 308-344 (433)
161 TIGR01579 MiaB-like-C MiaB-lik 37.8 28 0.00072 15.0 3.9 36 286-321 311-349 (492)
162 KOG1358 consensus 36.1 17 0.00043 16.3 1.1 15 217-231 335-349 (467)
163 pfam05362 Lon_C Lon protease ( 34.7 31 0.0008 14.6 3.8 21 217-237 166-186 (205)
164 PRK13911 hypothetical protein; 34.4 13 0.00032 17.1 0.2 11 242-252 237-247 (250)
165 PTZ00124 adenosine deaminase; 34.3 32 0.00081 14.6 9.8 104 118-247 207-310 (362)
166 TIGR03182 PDH_E1_alph_y pyruva 34.2 32 0.00082 14.6 5.6 85 108-194 138-231 (315)
167 TIGR00683 nanA N-acetylneurami 34.1 32 0.00082 14.6 3.6 39 167-206 72-115 (294)
168 PRK09213 purine operon repress 33.5 33 0.00084 14.5 4.7 47 24-78 60-106 (274)
169 pfam01964 ThiC ThiC family. Th 31.4 36 0.00091 14.3 6.9 24 116-139 138-162 (421)
170 PRK00912 ribonuclease P protei 31.0 36 0.00092 14.3 9.9 87 188-302 133-220 (237)
171 pfam04816 DUF633 Family of unk 30.6 15 0.00039 16.6 0.2 16 29-44 17-33 (204)
172 COG2046 MET3 ATP sulfurylase ( 30.5 32 0.00081 14.6 1.8 30 220-249 257-289 (397)
173 PRK00208 thiG thiazole synthas 30.4 37 0.00094 14.2 4.6 37 99-138 148-184 (256)
174 TIGR00763 lon ATP-dependent pr 29.7 36 0.00092 14.3 2.0 69 63-135 447-523 (941)
175 PRK09959 hybrid sensory histid 26.8 23 0.00058 15.5 0.5 28 161-188 334-362 (1197)
176 cd06276 PBP1_FucR_like Ligand- 25.8 45 0.0011 13.7 3.4 37 7-43 27-63 (247)
177 TIGR01859 fruc_bis_ald_ fructo 25.7 42 0.0011 13.9 1.7 120 112-253 63-197 (339)
178 pfam01747 ATP-sulfurylase ATP- 24.5 47 0.0012 13.6 2.5 29 221-249 191-222 (310)
179 COG4309 Uncharacterized conser 24.3 38 0.00097 14.1 1.3 24 230-254 27-50 (98)
180 PRK08392 hypothetical protein; 24.0 48 0.0012 13.5 11.5 46 10-60 1-53 (215)
181 cd00953 KDG_aldolase KDG (2-ke 23.4 49 0.0013 13.4 7.3 24 169-192 69-92 (279)
182 PRK07328 histidinol-phosphatas 23.3 50 0.0013 13.4 5.3 53 9-61 2-70 (268)
183 TIGR01584 citF citrate lyase, 23.1 16 0.00041 16.5 -0.9 11 11-21 47-57 (496)
184 pfam00676 E1_dh Dehydrogenase 23.0 51 0.0013 13.4 6.0 86 108-195 132-226 (303)
185 TIGR01120 rpiB ribose 5-phosph 22.2 41 0.001 13.9 1.1 13 243-255 4-16 (143)
186 TIGR00143 hypF [NiFe] hydrogen 21.8 27 0.00069 15.0 0.1 19 219-237 335-353 (799)
187 PRK05537 bifunctional sulfate 21.1 55 0.0014 13.1 2.0 32 220-251 260-294 (568)
188 pfam04106 APG5 Autophagy prote 20.8 56 0.0014 13.1 2.2 16 224-239 75-90 (195)
189 COG1816 Add Adenosine deaminas 20.2 58 0.0015 13.0 8.8 171 48-251 117-290 (345)
No 1
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=100.00 E-value=0 Score=680.58 Aligned_cols=334 Identities=50% Similarity=0.887 Sum_probs=314.5
Q ss_pred EEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCH
Q ss_conf 58646642375088178898749874188739998389514898989999999999983868846995013452789998
Q gi|254781012|r 4 ISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTETTDP 83 (349)
Q Consensus 4 l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~~~ 83 (349)
|+|||+||+|||||||++.+++.+|++||||+|++||||+||++|.+.+.+|++++.++. ....|.+.++.|++++.+.
T Consensus 1 l~lPg~iD~HVHlReg~~~~~~~~a~a~G~t~v~~MPNT~Ppi~~~~~~~~y~~~i~~~~-~~~~~~~~~~~~lt~~~~~ 79 (335)
T cd01294 1 LTIPRPDDMHLHLRDGAMLKLVLPYTARGFSRAIVMPNLKPPVTTTADALAYRERILAAD-PGPNFTPLMTLYLTENTTP 79 (335)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHC-CCCCEEEEEEEEECCCCCH
T ss_conf 908888661443789625888999983778699989999999899999999999999738-8983657888860589999
Q ss_pred HHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89987440687210221045510025654100688999999998739822202575555543001467654578999996
Q gi|254781012|r 84 DDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRN 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a 163 (349)
+++.++.....+.++|+|++|+++++++|+++...++++|++++++|+++++|||++....+..+||..++.+. ..+..
T Consensus 80 ~el~~~~~~~~v~giK~y~~gattns~~Gv~~~~~~~~~~e~~~~~~~~l~~H~E~~~~~~~~~~~E~~~i~~~-~~l~~ 158 (335)
T cd01294 80 EELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVL-EPLAQ 158 (335)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHH-HHHHH
T ss_conf 99997665278554662146860046557655899999999998669967774765887566036788767878-99998
Q ss_pred HHCCCEEEEECCCHHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 2069539970578589999987057-332023023100397886137888311321346999999999999976994189
Q gi|254781012|r 164 KLPNLKIILEHITTSNGIDYVNNAT-NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFF 242 (349)
Q Consensus 164 ~~~~~~iHi~HiST~~sv~lir~ak-~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~ 242 (349)
+++++|+||+||||+++|++||+++ +||||||||||+||++|+..+++++++|||||||+++||+|||+|++||+|++|
T Consensus 159 ~~~~l~ihi~HIST~~~ve~ik~~~~~VtaEVTPHHL~lt~~d~~~~~~~~~~kcnPplR~~~Dr~AL~~al~~G~id~~ 238 (335)
T cd01294 159 RFPKLKIVLEHITTADAVEYVKSCNENVAATITPHHLLLTRDDLLGGGLNPHLYCKPVAKRPEDREALRKAATSGHPKFF 238 (335)
T ss_pred HCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCEEEEEHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 68887699984385999999995899704887332157516787444858000329998998999999999974998489
Q ss_pred EECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCEEECHH
Q ss_conf 71388865313321545775445436799999999720699999999982431788188988852899947971784711
Q gi|254781012|r 243 LGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIPVNTRKISLKRREQPIIFDEK 322 (349)
Q Consensus 243 I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~~~~~~i~l~d~~~~~~v~~~ 322 (349)
||||||||+.+||+.++++||++++++++|+++++|++.++|++|++|||.|||++||||.++.+|++++ ++|+|+++
T Consensus 239 iaTDHAPH~~~eKe~~~~~AGi~~~~~al~~l~~~f~~~~~l~~l~~f~s~n~a~~~gl~~~~~~i~~~~--~~~~vp~~ 316 (335)
T cd01294 239 LGSDSAPHPKSNKESSCGCAGIFSAPIALPYLAEVFEEHNALDKLEAFASDNGPNFYGLPPNKKTITLVK--EPWKVPEK 316 (335)
T ss_pred EECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE--CCCCCCCE
T ss_conf 8479999864552488999981578889999999998048499999998465798809998998699997--88056872
Q ss_pred HCCCCCCEEECCCCEEECC
Q ss_conf 2267777146579769833
Q gi|254781012|r 323 ITTSTGSITIFNPIFPLYW 341 (349)
Q Consensus 323 ~~~sk~~~tpF~~g~~l~w 341 (349)
...||++|+||++|+++.|
T Consensus 317 ~~~~~~~~~P~~ag~~~~w 335 (335)
T cd01294 317 IPFGNNGVVPFRAGETLRW 335 (335)
T ss_pred EECCCCCEEECCCCCCCCC
T ss_conf 2149985786389987779
No 2
>PRK05451 dihydroorotase; Provisional
Probab=100.00 E-value=0 Score=622.52 Aligned_cols=342 Identities=54% Similarity=0.953 Sum_probs=332.7
Q ss_pred CCEEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC
Q ss_conf 96558646642375088178898749874188739998389514898989999999999983868846995013452789
Q gi|254781012|r 1 MKKISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTET 80 (349)
Q Consensus 1 ~~~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~ 80 (349)
|++|+|+.|+|+|||||||++++.+.++.+++|+++++||||+||++|.+.+.+|++|++++...+..|..++++|||++
T Consensus 2 ~~~i~i~~PdD~HvHlRdG~~l~~v~~~~a~~f~raivMPNl~PPi~t~~~a~~Yr~rI~~~~p~~~~f~PLMtlYLt~~ 81 (345)
T PRK05451 2 MQTLTIRRPDDWHLHLRDGAMLKAVVPYTARQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTLYLTDN 81 (345)
T ss_pred CCEEEECCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
T ss_conf 84067568150466653855789899999976798998999999989999999999999975778887402145654277
Q ss_pred CCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99889987440687210221045510025654100688999999998739822202575555543001467654578999
Q gi|254781012|r 81 TDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDP 160 (349)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~ 160 (349)
.+++++.++...+.+.++|+|++|+|++|+.||++...++++|++|++.|+++++|||..+...++.+||+.++++.+..
T Consensus 82 ~~~~ei~~~~~~~~v~a~KlYPaGaTTNS~~GV~~~~~~~~~le~m~~~g~pLliHGEv~~~~idifdrE~~Fi~~~l~~ 161 (345)
T PRK05451 82 TDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDFDIDIFDREAVFIDRVLEP 161 (345)
T ss_pred CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999874796788630247753567421423999999999999759904521454677667110587766999999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9962069539970578589999987057-332023023100397886137888311321346999999999999976994
Q gi|254781012|r 161 LRNKLPNLKIILEHITTSNGIDYVNNAT-NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNP 239 (349)
Q Consensus 161 ~~a~~~~~~iHi~HiST~~sv~lir~ak-~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i 239 (349)
+..+++++|++++||||+++|++|++++ +|+|+||||||+||++|+..++++|+++|+|+||+++||+||++|+.+|++
T Consensus 162 l~~~fP~LkIvlEHISTk~aV~~V~~~~~nv~atITpHHLlln~nd~~~~gi~Ph~~C~PvlK~~~dr~AL~~aa~sG~~ 241 (345)
T PRK05451 162 LRRRFPKLKIVFEHITTKDAVDYVREANDNLAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHQQALREAATSGNP 241 (345)
T ss_pred HHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCEEECCCCEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99868787689874357999999995799863275041124306777425778663007887998899999999727998
Q ss_pred EEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCEEE
Q ss_conf 18971388865313321545775445436799999999720699999999982431788188988852899947971784
Q gi|254781012|r 240 RFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIPVNTRKISLKRREQPIIF 319 (349)
Q Consensus 240 ~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~~~~~~i~l~d~~~~~~v 319 (349)
++|+|||||||+.++|+..+||||+|+++.++++++++|++.+.|++|..|.|.|++++||||.++..|+|++ ++|+|
T Consensus 242 kfflGTDsAPH~~~~Ke~~cgcAGiftap~al~~~a~~Fe~~~aLd~le~F~S~ng~~fY~lp~n~~~i~l~k--~~~~v 319 (345)
T PRK05451 242 KFFLGTDSAPHARHAKESACGCAGCFSAPAALELYAEVFEEAGALDKLEAFASLNGPDFYGLPRNTDTITLVR--EPWQV 319 (345)
T ss_pred CEEEECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE--CCCCC
T ss_conf 6687369998744433688788875653879999999998658298899998560798819999998799997--88307
Q ss_pred CHHHCCCCCCEEECCCCEEECCEEE
Q ss_conf 7112267777146579769833888
Q gi|254781012|r 320 DEKITTSTGSITIFNPIFPLYWEVM 344 (349)
Q Consensus 320 ~~~~~~sk~~~tpF~~g~~l~w~V~ 344 (349)
+++...++++++||.+|+++.|+|.
T Consensus 320 p~~~~~~~~~vvp~~ag~~l~W~v~ 344 (345)
T PRK05451 320 PESIPLGDETVVPFRAGETLRWSVK 344 (345)
T ss_pred CCEEECCCCEEEECCCCCEEEEEEE
T ss_conf 8745328971887179987355862
No 3
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type; InterPro: IPR004722 Dihydroorotase belongs to MEROPS peptidase family M38 (clan MJ), where it is classified as a non-peptidase homologue. DHOase catalyses the third step in the de novo biosynthesis of pyrimidine, the conversion of ureidosuccinic acid (N-carbamoyl-L-aspartate) into dihydroorotate. Dihydroorotase binds a zinc ion which is required for its catalytic activity . In bacteria, DHOase is a dimer of identical chains of about 400 amino-acid residues (gene pyrC). In higher eukaryotes, DHOase is part of a large multi-functional protein known as 'rudimentary' in Drosophila melanogaster and CAD in mammals and which catalyzes the first three steps of pyrimidine biosynthesis . The DHOase domain is located in the central part of this polyprotein. In yeasts, DHOase is encoded by a monofunctional protein (gene URA4). However, a defective DHOase domain is found in a multifunctional protein (gene URA2) that catalyzes the first two steps of pyrimidine biosynthesis. The comparison of DHOase sequences from various sources shows that there are two highly conserved regions. The first located in the N-terminal extremity contains two histidine residues suggested to be involved in binding the zinc ion. The second is found in the C-terminal part. Members of this family of proteins are predicted to adopt a TIM barrel fold . Dihydroorotase 'multifunctional complex type' 3.5.2.3 from EC, in contrast to the homodimeric type of dihydroorotase found in Escherichia coli, tends to appear in a large multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and Pseudomonas aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present..
Probab=100.00 E-value=0 Score=631.39 Aligned_cols=337 Identities=20% Similarity=0.228 Sum_probs=284.0
Q ss_pred EEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHC-------------
Q ss_conf 5586466423750881------788987498741887399983895148989899999999999838-------------
Q gi|254781012|r 3 KISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNAL------------- 63 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~------------- 63 (349)
.|++||+||+|||||| ||+.|||+||++||||+|+|||||+||+||++.+..+.++..+..
T Consensus 41 ~lvlPG~iD~HVHlRdpg~eyKEdi~~G~~AA~~GG~t~V~dMPNT~PP~d~~~~~~~~~~~~~~~~GvnahhqPPGdPq 120 (459)
T TIGR00857 41 LLVLPGLIDLHVHLRDPGEEYKEDIESGSKAAIHGGFTTVADMPNTKPPIDTPETLERKLQRLKKKSGVNAHHQPPGDPQ 120 (459)
T ss_pred CEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 47806004777621889874113188999997558715899857431377898999999997410146423468555875
Q ss_pred ----CCCCEEEEEEEEEECCCCCHHH---HHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECC
Q ss_conf ----6884699501345278999889---987440687210221045510025654100688999999998739822202
Q gi|254781012|r 64 ----PPEYDFSPLMTIYLTETTDPDD---VEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIH 136 (349)
Q Consensus 64 ----~~~~~~~~~~~~~lt~~~~~~~---~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H 136 (349)
.....+++..++++|.++.+++ +.++........+ +.+|+.+...+++...+.++|++++..|+++++|
T Consensus 121 aenrPdsa~vd~~~~~~vt~~~~gk~~~~~~~~~~~~~~~~~----G~~F~~d~~~~~~~~~~~~~le~a~~~Gv~~~~H 196 (459)
T TIGR00857 121 AENRPDSALVDVLLYAGVTKGNKGKEIVRLTEAYELKEAGAV----GEVFIDDGSEVLDILSMRKALEYAAELGVLIVLH 196 (459)
T ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCEEEECCHHHHHCCCEE----EEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 355888525545786457044455510111250565106436----8987645523420345678999885579369982
Q ss_pred CCCCCCCCC----------------CHHHHHHHHHHHHHHHHHHHCCCE-----EEEECCCHHHHHHHHHHCC------C
Q ss_conf 575555543----------------001467654578999996206953-----9970578589999987057------3
Q gi|254781012|r 137 GEILNQDID----------------IFDRELMFIDKILDPLRNKLPNLK-----IILEHITTSNGIDYVNNAT------N 189 (349)
Q Consensus 137 ~E~~~~~~~----------------~~~~E~~~~~~~l~~~~a~~~~~~-----iHi~HiST~~sv~lir~ak------~ 189 (349)
||+.++... .+.+++|.....+++.+++..+++ +|||||||++++++|+++| +
T Consensus 197 aE~~~l~~~~~~~~~~~~~~~~gl~~rp~~aE~~~va~~~~l~~~~g~~nkkPhvHicHiSTk~~~~~i~~~k~~~~Gi~ 276 (459)
T TIGR00857 197 AEDPDLIAGGLVEYEGRSAAALGLKARPPEAEEVAVARLLELAKHAGCPNKKPHVHICHISTKESLELIKKAKKQLKGIK 276 (459)
T ss_pred CCCHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCCCE
T ss_conf 58867732674212233247536788820337999999999998618888888436998650015889998764004623
Q ss_pred CCEEEECCCCCCCHHHHHC------CCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHC--CCCC
Q ss_conf 3202302310039788613------7888311321346999999999999976994189713888653133215--4577
Q gi|254781012|r 190 IAGSITVHHLIINRNAIFH------DGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKES--SCGC 261 (349)
Q Consensus 190 vtaEVTPHHL~lt~~d~~~------~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~--~~~~ 261 (349)
||||||||||||+++++.. -.++++.|+|||||.++||.|||++++||.| |+||||||||+.|||.. ..++
T Consensus 277 ~T~EVtPHHLlL~~~~~~~GlPPhtP~~~~~~kvNPPLR~~eDr~aL~~~~~~G~I-D~iAsDHAPH~~eEK~~~~~~ap 355 (459)
T TIGR00857 277 ITAEVTPHHLLLSEEDVARGLPPHTPPLDTNLKVNPPLREEEDRLALIEGLKDGII-DIIASDHAPHTLEEKLKEVAAAP 355 (459)
T ss_pred EEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CEEECCCCCCCHHHHHCCHHHCC
T ss_conf 89984673001786888268878888888850137798885359999776634720-17855786421265502155467
Q ss_pred CCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHCCHHHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEE
Q ss_conf 54454367999999997206--9999999998243178818898-------88528999479717847112267777146
Q gi|254781012|r 262 AGIYTARNALNCLAQIFEEE--NKLENLESFVSINGATWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSITI 332 (349)
Q Consensus 262 ~g~~~~~~~~~~~~~~~~~~--~~L~~l~~~~s~npa~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tp 332 (349)
+|+.++++.+|+++....+. +||.+++++||.||||||||+. +.||||++|++++|+++++.|+||++|||
T Consensus 356 pG~pgle~~~p~~l~~~~kg~lis~~~~~~~~s~nParIfgl~~~G~l~~G~~Ad~tv~Dl~k~~~i~~e~f~sKa~~TP 435 (459)
T TIGR00857 356 PGIPGLETVLPLLLQLLVKGNLISLKDLVRMLSINPARIFGLPDKGTLEEGNPADLTVIDLKKEWTIKAETFYSKAKNTP 435 (459)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEECCCHHCEEEHHHCCCCCCCCC
T ss_conf 88733888999999997548732689999998526551122798774136797762378741000530101432213775
Q ss_pred CCCCEEECCEEEE
Q ss_conf 5797698338887
Q gi|254781012|r 333 FNPIFPLYWEVML 345 (349)
Q Consensus 333 F~~g~~l~w~V~~ 345 (349)
|+ |+++.|.|++
T Consensus 436 f~-G~~~~g~p~~ 447 (459)
T TIGR00857 436 FE-GMSLKGKPIA 447 (459)
T ss_pred CC-CEEECCEEEE
T ss_conf 66-7446473589
No 4
>PRK07369 dihydroorotase; Provisional
Probab=100.00 E-value=0 Score=567.10 Aligned_cols=330 Identities=16% Similarity=0.083 Sum_probs=275.1
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
..+++||+||.|||||| |++.+||+||++||||||++||||.|++++.+.++.+++++.+. .....+.+.+
T Consensus 52 G~~vlPG~ID~HvH~~~pg~~~ked~~tgt~AAa~GGvTtv~~mPnt~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~g 128 (419)
T PRK07369 52 GLILGPGLVDLYSHSGEPGFEERETLASLAAAAAAGGFTRVAILPDTSPPLDNPATLARLQQQLQGP---SPPPQLLFWG 128 (419)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC---CCCEEEEEEE
T ss_conf 9989799997874579998643042988999998189769998989999988599999999996006---9973999971
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC----------
Q ss_conf 5278999889987440687210221045510025654100688999999998739822202575555543----------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID---------- 145 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~---------- 145 (349)
+++.+...+.+.+.......+ +..|. ++.++.|...++++|++++..+.++++|||+..+...
T Consensus 129 ~~~~~~~~~~l~el~~l~~~G-v~~f~------~~~~~~~~~~l~~~l~~~~~~~~~v~~h~ed~~l~~~~~~~~g~~~~ 201 (419)
T PRK07369 129 ALTLGGQGKQLTELAELAAAG-VVGFT------DGQPLENLALLRRLLEYLAPLGKPVALWPCDRQLAGNGVMREGPDAL 201 (419)
T ss_pred EEECCCCHHHHHHHHHHHHCC-CEEEC------CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHCHHHHCCCCCH
T ss_conf 245386245677666676079-68904------89654899999999999986399189950689887272654486402
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf -----0014676545789999962069539970578589999987057----3320230231003978861378883113
Q gi|254781012|r 146 -----IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYY 216 (349)
Q Consensus 146 -----~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k 216 (349)
.+..++|..+..+++.+++.+++++||+|+||++++++|+++| +||||||||||+||++++.. +++++|
T Consensus 202 ~~~~~~rP~~~E~~av~r~i~lA~~~g~~lhi~HvSs~~~~e~i~~ak~~G~~vt~Et~phhL~l~~~~~~~--~~~~~k 279 (419)
T PRK07369 202 RLGLPGIPASAETAALAALLELVAAIGTPVHLMRVSTARSVELIAQAKARGLPITASTTWMHLLLNTEALAS--YDPNLR 279 (419)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCCHHHHHCCHHHHHC--CCCCEE
T ss_conf 028998844554699999999988753848996168589999999888639808964625755478978727--577579
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHH--HHHCCCCHHHHHHHHH
Q ss_conf 2134699999999999997699418971388865313321545--77544543679999999--9720699999999982
Q gi|254781012|r 217 CLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQ--IFEEENKLENLESFVS 292 (349)
Q Consensus 217 ~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~--~~~~~~~L~~l~~~~s 292 (349)
||||||+++||++||++|++|+| |+|+||||||+.++|..+| +++|+.|.++.+|++++ |..+.++|++++++||
T Consensus 280 ~~PPLR~~~d~~aLw~al~~G~I-d~i~SDHaP~~~~eK~~~f~~ap~G~~Gve~~lpll~~~~V~~g~lsl~~~v~~~s 358 (419)
T PRK07369 280 LDPPLGNPSDRQALIEGIRTGII-DAIAIDHTPYTYEEKTVAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALS 358 (419)
T ss_pred EECCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCCHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 85899898899999878736976-79982888999888448853489983438879999999998749989999999977
Q ss_pred HCCHHHCCCCC------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 43178818898------885289994797178471122677771465797698338887
Q gi|254781012|r 293 INGATWYGIPV------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 293 ~npa~~~gl~~------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
+||||+|||++ ..+||+|+||+++|+|+.+.++|+++||||+ |++++|+|+.
T Consensus 359 ~nPAki~gl~~g~I~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sPfe-G~~l~G~V~~ 416 (419)
T PRK07369 359 TNPARCLGLEPPSLEPGHPAELILFDPQKTWTVSAQTLHSRSRNTPWL-GQTLTGRVLQ 416 (419)
T ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 789998399999727999777899929998898824360768988857-9788779999
No 5
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=556.14 Aligned_cols=327 Identities=20% Similarity=0.176 Sum_probs=278.3
Q ss_pred EEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 5586466423750881------7889874987418873999838951489898999999999998386884699501345
Q gi|254781012|r 3 KISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIY 76 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~ 76 (349)
.+++||+||.|||||| |++.|||+||++||||+|++||||+||++|++.++.+.+++. .+..+++.++++
T Consensus 49 ~~v~PG~ID~HVH~repg~~~ke~~~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~----~~~~vd~~~~~~ 124 (430)
T COG0044 49 LLVLPGLVDLHVHFREPGFEHKETFETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAK----GKSVVDYAFYGG 124 (430)
T ss_pred CEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHH----CCCEEEEEEEEE
T ss_conf 8777777566773389984135568769999975892699977789999887999999998640----375478999876
Q ss_pred ECCCCCH-HHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCC-----------
Q ss_conf 2789998-8998744068721022104551002565410068899999999873982220257555554-----------
Q gi|254781012|r 77 LTETTDP-DDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDI----------- 144 (349)
Q Consensus 77 lt~~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~----------- 144 (349)
+|.++.. .++.+... ..+++.|+.. ..+..+...++++|++++..|.++++|||++....
T Consensus 125 it~~~~~~~~~~~~~~---~~g~~~F~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~ 196 (430)
T COG0044 125 LTKGNLGKLELTERGV---EAGFKGFMDD-----STGALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAP 196 (430)
T ss_pred EECCCCHHHHHHHHHH---CCCEEEEECC-----CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCH
T ss_conf 4126510477664211---1546999569-----8765688999999999985598699971780355556751586532
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf ----30014676545789999962069539970578589999987057----3320230231003978861378883113
Q gi|254781012|r 145 ----DIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYY 216 (349)
Q Consensus 145 ----~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k 216 (349)
..+..+++.....+++.+++.+|+++||||+||++++++|++++ +||||||||||+|+++++.. +++++|
T Consensus 197 ~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~HiSt~~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~--~~~~~k 274 (430)
T COG0044 197 ELGLAGRPPIAEASAIARDLELARATGARVHICHISTKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIED--LGTLAK 274 (430)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCEECCHHHHHC--CCCCEE
T ss_conf 103468983778999999999999869968999548599999999987649955886272136656768532--474024
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHH
Q ss_conf 2134699999999999997699418971388865313321545--77544543679999999-97206999999999824
Q gi|254781012|r 217 CLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQ-IFEEENKLENLESFVSI 293 (349)
Q Consensus 217 ~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~~~s~ 293 (349)
||||||+++||++||+++++|+| |+|+||||||+.+||..++ +++|+.|.++++|++++ +..+..+|++++++||+
T Consensus 275 ~nPPLR~~~dr~aL~~~l~~G~I-D~iasDHaPht~eeK~~~f~~ap~G~~glE~~lpl~l~lv~~g~lsl~~~v~~~S~ 353 (430)
T COG0044 275 VNPPLRDEEDREALWEALKDGVI-DVIASDHAPHTLEEKRLPFEEAPSGIPGLETALPLLLTLVKKGRLSLERLVELLST 353 (430)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCC-CEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC
T ss_conf 78999987899999999877987-68976899999788315320099987358889999999986588799999999741
Q ss_pred CCHHHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 3178818898-------885289994797178471122677771465797698338887
Q gi|254781012|r 294 NGATWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 294 npa~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
||||+|||+. ..+||+|+|++++|+|+.+.+.||++||||+ |+++.|+|+.
T Consensus 354 nPA~ifgl~~~g~i~~G~~ADl~lvD~~~~~~i~~~~~~sk~~~sPf~-G~~~~g~v~~ 411 (430)
T COG0044 354 NPARIFGLPPKGAIEEGADADLVLVDPDEEWTIRAEELYSKAKNSPFE-GFELKGRVVA 411 (430)
T ss_pred CHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEECHHHHHCCCCCCCCC-CCEEEEEEEE
T ss_conf 979983999887446799776799848987077536632114799988-9776224789
No 6
>PRK09060 dihydroorotase; Validated
Probab=100.00 E-value=0 Score=556.98 Aligned_cols=331 Identities=15% Similarity=0.129 Sum_probs=273.6
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.++++||+||+|||||| ||+.+||+||++||||||++||||+|++++.+.+..+++++...+. +++.+++
T Consensus 51 G~~v~PG~ID~HvH~~ePG~~~ked~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~----vd~~~~~ 126 (444)
T PRK09060 51 GLHVLPGVIDSQVHFREPGLEHKEDLETGSRAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMH----CDFAFYV 126 (444)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC----CEEEEEE
T ss_conf 999957989755057999976524465534989809937999777889996889999999998742654----1156777
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCC------------
Q ss_conf 52789998899874406872102210455100256541006889999999987398222025755555------------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQD------------ 143 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~------------ 143 (349)
+.+.. +.+++.++.....+.++|+|++.++ .+..+.+...++++|+++ +..+++|||+....
T Consensus 127 g~~~~-~~~~l~el~~~~g~~~~k~f~~~s~--g~~~~~d~~~l~~~~~~~---~~~~~~H~Ed~~~l~~~~~~~~~g~~ 200 (444)
T PRK09060 127 GGTRD-NADELAELERLPGCAGVKVFMGSST--GDLLVEDDEGLRRILRNG---RRRAAFHSEDEYRLRERKGLRVEGDP 200 (444)
T ss_pred EECCC-CHHHHHHHHHHHCCCEEEEEECCCC--CCEEECCHHHHHHHHHHC---CCCEEEECCCHHHHHHCHHHCCCCCH
T ss_conf 43278-7789999985103654899841777--861006999999999854---87338734788998622232127997
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHCCCCCCCEEECC
Q ss_conf ---430014676545789999962069539970578589999987057-3320230231003978861378883113213
Q gi|254781012|r 144 ---IDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT-NIAGSITVHHLIINRNAIFHDGLNPHYYCLP 219 (349)
Q Consensus 144 ---~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak-~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nP 219 (349)
...+..+++..+..+++.+++.+|+++||+|+||++++++||++| ++|||||||||+|+++|+.+ .+|+++||||
T Consensus 201 ~~~~~~r~~~~e~~ai~r~i~la~~tg~~lhi~HvSt~~~~~~i~~ak~~vt~E~~ph~L~l~~~d~~~-~~g~~~k~~P 279 (444)
T PRK09060 201 RSHPVWRDEEAALLATRRLVRLARETGRRIHVLHVSTAEEIDFLADHKDVATVEVTPHHLTLAAPDCYE-RLGTLAQMNP 279 (444)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHH-CCCCEEEECC
T ss_conf 674555888999999999999999879937999558699999999708875899962052085166651-4496399748
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCC--CCCCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHCCH
Q ss_conf 46999999999999976994189713888653133215457--7544543679999999-97206999999999824317
Q gi|254781012|r 220 IPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCG--CAGIYTARNALNCLAQ-IFEEENKLENLESFVSINGA 296 (349)
Q Consensus 220 PlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~--~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~~~s~npa 296 (349)
|||+++||++||++|++|+| |+|+||||||+.++|+.+|. +.|+.++++.+|+++. +..+.++|++++++||.|||
T Consensus 280 PLR~~~d~~aL~~~l~~G~I-D~I~SDH~P~~~~~K~~~f~~a~~G~~glEt~lplll~~v~~g~lsl~~~v~~~s~nPA 358 (444)
T PRK09060 280 PVRDARHRDALWRGVRQGIV-DVLGSDHAPHTLEEKAKPYPASPSGMTGVQTLVPVMLDHVNAGRLSLERFVDLTSAGPA 358 (444)
T ss_pred CCCCHHHHHHHHHHHHCCCC-CEEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98997999999999866996-09970897889788578764113897308879999999998298329999999717499
Q ss_pred HHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 8818898-------885289994797178471122677771465797698338887
Q gi|254781012|r 297 TWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 297 ~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
|+||||. ..+||+|+|++++|+|+.+.+.||++||||+ |++++|+|++
T Consensus 359 ki~GL~~kG~i~~G~dADlvi~Dp~~~~~v~~~~~~sk~~~spf~-G~~l~G~v~~ 413 (444)
T PRK09060 359 RIFGIAGKGRIAVGYDADFTIVDLKRRETITNEWIASRAGWTPYD-GKEVTGWPVG 413 (444)
T ss_pred HHHCCCCCCCCCCCCCCCEEEECCCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 984989887357999665899959997898846565768867767-9888768999
No 7
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=100.00 E-value=0 Score=547.92 Aligned_cols=312 Identities=17% Similarity=0.172 Sum_probs=268.3
Q ss_pred EEECCCCEEEEECCC-------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 586466423750881-------7889874987418873999838951489898999999999998386884699501345
Q gi|254781012|r 4 ISLRVPDDWHLHLRD-------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIY 76 (349)
Q Consensus 4 l~lp~~~D~HvH~Re-------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~ 76 (349)
+++||+||+|||||| ||+.|+|+||++||||||++||||+||+++.+.+..+++++.+ +..+++.+++.
T Consensus 2 ~v~PG~iD~HvH~r~pg~~~~ked~~s~t~AAa~GGvTtv~~mPnt~p~~~~~~~~~~~~~~a~~----~~~vd~~~~~~ 77 (337)
T cd01302 2 LVLPGFIDIHVHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEE----SSYVDFSFHAG 77 (337)
T ss_pred EEECCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC----CCCEEEEEEEE
T ss_conf 89488787033257899988643599999999848800799898999998989999999998613----68635766888
Q ss_pred ECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 27899988998744068721022104551002565410068899999999873982220257555554300146765457
Q gi|254781012|r 77 LTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDK 156 (349)
Q Consensus 77 lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~ 156 (349)
++++...+++.++...+ +.++|.|+... ..+....+...+.++|+++++.+.++++|||
T Consensus 78 ~~~~~~~~el~~~~~~g-~~~~k~f~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~v~~HaE------------------ 136 (337)
T cd01302 78 IGPGDVTDELKKLFDAG-INSLKVFMNYY--FGELFDVDDGTLMRTFLEIASRGGPVMVHAE------------------ 136 (337)
T ss_pred EECCCCHHHHHHHHHCC-CCCEEEEEEEC--CCCCCCCCHHHHHHHHHHHHHCCCEEEEHHH------------------
T ss_conf 61575577899988767-32022898733--7876547999999999988757997997088------------------
Q ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf 89999962069539970578589999987057----33202302310039788613788831132134699999999999
Q gi|254781012|r 157 ILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRK 232 (349)
Q Consensus 157 ~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ 232 (349)
+++.+++.+|+|+||+||||++++++||++| +||||||||||+||++++.. +++++|||||||+++||+|||+
T Consensus 137 -r~~~la~~~g~~lhi~HvSt~~sle~I~~ak~~G~~Vt~Ev~phhL~l~~~~~~~--~~~~~k~~PPLR~~~d~~aL~~ 213 (337)
T cd01302 137 -RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRL--NGAWGKVNPPLRSKEDREALWE 213 (337)
T ss_pred -HHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEECCCCHHHHCCCHHHHHC--CCCCEECCCCCCCHHHHHHHHH
T ss_conf -8999999879989999389989999999988729836646435554299878713--5863640799897789999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHCC--C--CCCCCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHCCHHHCCCCC----
Q ss_conf 99769941897138886531332154--5--7754454367999999997-2069999999998243178818898----
Q gi|254781012|r 233 AALSGNPRFFLGTDSAPHWDSSKESS--C--GCAGIYTARNALNCLAQIF-EEENKLENLESFVSINGATWYGIPV---- 303 (349)
Q Consensus 233 ai~~G~i~d~I~TDHAPH~~eeK~~~--~--~~~g~~~~~~~~~~~~~~~-~~~~~L~~l~~~~s~npa~~~gl~~---- 303 (349)
++++|+| |+|+||||||+.++|+.. + +++|+.++++.+|+++... ++.++|++++++||.||||+|||++
T Consensus 214 ~l~~G~I-D~i~SDHaP~~~~~K~~~~~f~~a~~G~~glet~lpl~l~~~~~~~lsl~~~v~~~s~nPAki~gl~~kG~i 292 (337)
T cd01302 214 GVKNGKI-DTIASDHAPHSKEEKESGKDIWKAPPGFPGLETRLPILLTEGVKRGLSLETLVEILSENPARIFGLYPKGTI 292 (337)
T ss_pred HHHCCCC-CEEEECCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8874995-589858889898881024674648898752777999999999854999999999997889999598988861
Q ss_pred ---CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf ---885289994797178471122677771465797698338887
Q gi|254781012|r 304 ---NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 304 ---~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
..+||+|+||+++|+|+.+.+.||++||||+ |++++|+|+.
T Consensus 293 ~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~~-G~~l~G~v~~ 336 (337)
T cd01302 293 AVGYDADLVIVDPKKEWKVTAEEIESKADWTPFE-GMEVTGKPVS 336 (337)
T ss_pred CCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 6899578899959996898745580758857746-9888789957
No 8
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=100.00 E-value=0 Score=540.50 Aligned_cols=325 Identities=17% Similarity=0.173 Sum_probs=270.2
Q ss_pred EEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 5586466423750881------7889874987418873999838951489898999999999998386884699501345
Q gi|254781012|r 3 KISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIY 76 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~ 76 (349)
.+++||+||+|||||| |++.|+|+||++||||||++||||+|++++.+.++.+.++. ..+..+++.++++
T Consensus 2 ~~v~PG~ID~hvH~r~pg~~~~e~~~s~s~AA~aGGvTtv~~mPnt~p~~~~~~~~~~~~~~a----~~~~~vd~~~~~~ 77 (361)
T cd01318 2 LLILPGVIDIHVHFREPGLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLA----AAKSVVDYGLYFG 77 (361)
T ss_pred CEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH----CCCCCEEEEEEEE
T ss_conf 898368487241469999775150999999998489538998999989989999999999973----5588104888862
Q ss_pred ECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCC------------
Q ss_conf 27899988998744068721022104551002565410068899999999873982220257555554------------
Q gi|254781012|r 77 LTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDI------------ 144 (349)
Q Consensus 77 lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~------------ 144 (349)
++++...+++.+.. ..++|.|+.... +....+...++ ++++..+.++++|||+..+..
T Consensus 78 ~t~~~~~~~l~~~g----~~~~k~f~~~~~---~~~~~~~~~l~---~~~~~~~~~v~~H~Ed~~~~~~~~~~~~~~~~~ 147 (361)
T cd01318 78 VTGSEDLEELDKAP----PAGYKIFMGDST---GDLLDDEETLE---RIFAEGSVLVTFHAEDEDRLRENRKELKGESAH 147 (361)
T ss_pred ECCCCHHHHHHHHH----HCCEEEEEECCC---CCCCHHHHHHH---HHHHHCCCEEEEECCCHHHHHCCHHCCCCCCCC
T ss_conf 04751489999734----164458860578---75102399999---999707995999268988884301033431235
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCC
Q ss_conf -30014676545789999962069539970578589999987057-3320230231003978861378883113213469
Q gi|254781012|r 145 -DIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT-NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPK 222 (349)
Q Consensus 145 -~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak-~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR 222 (349)
.....+++.....+++.+++.+++|+||+|+||++++++||+++ +||||||||||+||++++.. +++++|||||||
T Consensus 148 ~~~~p~~aE~~av~r~l~la~~~g~~~hi~hvSt~~~l~~i~~a~~~vt~et~ph~L~l~~~~~~~--~~~~~k~~PPLR 225 (361)
T cd01318 148 PRIRDAEAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAKPGVTVEVTPHHLFLDVEDYDR--LGTLGKVNPPLR 225 (361)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCEEEECHHHHCCCHHHHCC--CCCCEEECCCCC
T ss_conf 678989999999999999999859968999408899999999759996588523654278134315--687166359989
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCC--CCCCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHCCHHHC
Q ss_conf 99999999999976994189713888653133215457--75445436799999999-7206999999999824317881
Q gi|254781012|r 223 REKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCG--CAGIYTARNALNCLAQI-FEEENKLENLESFVSINGATWY 299 (349)
Q Consensus 223 ~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~--~~g~~~~~~~~~~~~~~-~~~~~~L~~l~~~~s~npa~~~ 299 (349)
+++||++||++|+||+| |+|+|||+||+.++|..++. +.|+.++++.+|++++. .++.++|++++++||.||||+|
T Consensus 226 ~~~dr~aL~~~l~~G~I-d~i~SDH~P~~~~~K~~~f~~a~~Gi~g~e~~l~l~~~lv~~g~l~l~~~v~~~s~nPAki~ 304 (361)
T cd01318 226 SREDRKALLQALADGRI-DVIASDHAPHTLEEKRKGYPAAPSGIPGVETALPLMLTLVNKGILSLSRVVRLTSHNPARIF 304 (361)
T ss_pred CHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 77899999999865996-49972898889898368977577875109889999999987288149999999968899994
Q ss_pred CCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 8898-------885289994797178471122677771465797698338887
Q gi|254781012|r 300 GIPV-------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 300 gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
||+. ..+||+|+|++++|+|+.+.+.||++||||+ |++|+|+|+.
T Consensus 305 gl~~kG~i~~G~dADlvl~Dp~~~~~v~~~~~~s~~~~sp~~-G~~l~G~v~~ 356 (361)
T cd01318 305 GIKNKGRIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFE-GFEVTGFPVM 356 (361)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 989888578899377899949997898825463758867837-9888889999
No 9
>PRK09059 dihydroorotase; Validated
Probab=100.00 E-value=0 Score=543.00 Aligned_cols=330 Identities=17% Similarity=0.138 Sum_probs=273.0
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.++++||+||+|||||| +++.++|+||++||||||++||||.|++++.+.++.+++++... +.+++++.+
T Consensus 55 G~~vlPG~ID~HvH~~~pg~~~~e~~~t~s~AA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~----~~~~~~~~~ 130 (429)
T PRK09059 55 GKAVAPGLVDARVFVGEPGAEHRETIASASRAAAAGGVTSIIMMPDTDPVIDNVALVEFVKRTARDT----AIVNIHPAA 130 (429)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH----CCCCCCEEE
T ss_conf 9989489898862569988544344888999998289079997579988888499999999860321----553401378
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC----------
Q ss_conf 5278999889987440687210221045510025654100688999999998739822202575555543----------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID---------- 145 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~---------- 145 (349)
.++.+..++++.+.......+.+. ++..+..+.+...++++|+++++++.++++|||+..+...
T Consensus 131 ~~~~~~~~~~l~e~~~l~~~g~~~------f~~~~~~~~~~~~l~~~~~~~~~~~~~~~~h~Ed~~l~~~~~~~eg~~~~ 204 (429)
T PRK09059 131 AITKGLAGEEMTEFGLLRAAGAVA------FTDGRRSVANAQVMRRALTYARDFDAVIVHETEDPDLGGNGVMNEGLFAS 204 (429)
T ss_pred EEECCCCCCHHHHHHHHHHCCEEE------ECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHCHHHCCCCCCC
T ss_conf 852488722345567898669067------50486356899999999999986698479888898888442432542000
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf -----0014676545789999962069539970578589999987057----3320230231003978861378883113
Q gi|254781012|r 146 -----IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYY 216 (349)
Q Consensus 146 -----~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k 216 (349)
...++++.....+.+.+++.+++++||+|+||++++++|+++| +||||||||||+|+++|+.. +++++|
T Consensus 205 ~~~~~~~P~~~E~~av~r~i~la~~~~~~vhi~HiSs~~~~~~I~~ak~~G~~vt~ev~phhL~l~~~~~~~--~~~~~k 282 (429)
T PRK09059 205 WLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAESADALRRAKDRGLKVTAGVSINHLSLNENDIGE--YRTFFK 282 (429)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCCHHHHCC--CCCCCC
T ss_conf 138999998999999999999999859858986317267799999999739968999605752288557442--367223
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHH
Q ss_conf 2134699999999999997699418971388865313321545--77544543679999999-97206999999999824
Q gi|254781012|r 217 CLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQ-IFEEENKLENLESFVSI 293 (349)
Q Consensus 217 ~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~~~s~ 293 (349)
||||||+++||++||++|++|+| |+|+||||||+.++|..+| +++|+.|+++.+|+++. +..+.++|++++++||.
T Consensus 283 ~~PPLR~~~d~~~L~~~l~~G~I-d~i~SDHaP~~~~~K~~~f~~a~~G~~gve~~lp~~~~~v~~~~isl~~~v~~~s~ 361 (429)
T PRK09059 283 LSPPLRTEEDRLAMVEAVASGTI-DVIVSDHDPQDVDTKRLPFAEAAAGAIGLETLLAAALRLYHNGEVPLLRLIEALST 361 (429)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 48999998999999999977997-09996999999777659863236785607659999999998599999999999969
Q ss_pred CCHHHCCCC------CCCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 317881889------8885289994797178471122677771465797698338887
Q gi|254781012|r 294 NGATWYGIP------VNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 294 npa~~~gl~------~~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
||||+|||+ +..+||+|+|++++|+|+.+.++||++||||+ |++++|+|+.
T Consensus 362 nPAki~Gl~kG~i~~G~dADlvi~D~~~~~~v~~~~~~s~~~~sp~~-G~~l~G~v~~ 418 (429)
T PRK09059 362 RPAELFGLPAGTLKPGAPADIIVIDLDEPWVVDPEDLKSRSKNTPFE-EARFQGRVVR 418 (429)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 99999699888617998168899959998898857770758977855-9788889999
No 10
>PRK08417 dihydroorotase; Provisional
Probab=100.00 E-value=0 Score=527.06 Aligned_cols=318 Identities=14% Similarity=0.146 Sum_probs=253.3
Q ss_pred CEEEECCCCEEEEECCC-----HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 65586466423750881-----7889874987418873999838951489898999999999998386884699501345
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD-----GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIY 76 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re-----g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~ 76 (349)
..+++||+||+|||||+ +|+.|+|+||++||||||++||||.|++++.+.++.+++++.+.. ...+. . ...
T Consensus 25 G~~vlPG~ID~HvH~~~~~~~~~d~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~~--~~~~~-~-~~~ 100 (387)
T PRK08417 25 GMTLLPALVDLNVRVKNDKLSLKNLKLLANEALKGGIGSIVLRPDSTPSIDNEISLELILSNLAELP--MQIFP-S-ISA 100 (387)
T ss_pred CCEEECCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC--CEEEE-E-EEE
T ss_conf 9989799896874789999774359999999984687899989889999999899999998730578--32899-9-997
Q ss_pred ECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC-----------
Q ss_conf 278999889987440687210221045510025654100688999999998739822202575555543-----------
Q gi|254781012|r 77 LTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID----------- 145 (349)
Q Consensus 77 lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~----------- 145 (349)
........++......+. .++++ ....+...+.+++++++..+.++++|||+..+...
T Consensus 101 ~~~~~~~~~~~~l~~~g~---~~~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~g~~~~~ 169 (387)
T PRK08417 101 LDKEGKLSNIAILLKKGA---KAIYL--------DSSLDANLLKRIAQYAQMLDVPIFCRCEDSSFRDSGVMNDGELSFE 169 (387)
T ss_pred ECCCCCHHHHHHHHHCCC---EEEEC--------CCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCHH
T ss_conf 158851677999987795---89965--------8889869999999988862977999069989974068755863310
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEEE
Q ss_conf ----0014676545789999962069539970578589999987057----33202302310039788613788831132
Q gi|254781012|r 146 ----IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYYC 217 (349)
Q Consensus 146 ----~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k~ 217 (349)
...++++..+..+.+.+++.+++++||+|+||++++++|+++| +||||||||||+||++++.+ +++.+||
T Consensus 170 ~~l~~~P~~aE~~av~r~i~la~~~~~~~hi~HiSt~~~l~~i~~ak~~G~~it~Et~phhL~l~~~~~~~--~~~~~k~ 247 (387)
T PRK08417 170 LGLPGIPKLSETKEVAKMIELAKFYKIKVLFDALSLPRSLELIDKARSEGPNVFAEVSIHHLILDDSSCKG--FNTAAKL 247 (387)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECHHHHHCCHHHHHC--CCCCEEE
T ss_conf 07998987999999999999999729965999724456677789987548726555418777479977636--6885076
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHHH--HHCCCCHHHHHHHHHH
Q ss_conf 134699999999999997699418971388865313321545--775445436799999999--7206999999999824
Q gi|254781012|r 218 LPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQI--FEEENKLENLESFVSI 293 (349)
Q Consensus 218 nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~~--~~~~~~L~~l~~~~s~ 293 (349)
|||||+++||++||++|++|+| |+||||||||+.++|+.+| +++|+.|+++.+|+++.. ..+.++|++++++||+
T Consensus 248 ~PPLR~~~d~~aLw~~l~~G~I-d~iaSDHaP~~~e~K~~~~~~~~~G~~Gve~~lpll~~~~v~~g~isl~~~v~~~s~ 326 (387)
T PRK08417 248 NPPLRSKEDRLALREALKEGKI-DFLTSLHSAKSNSKKDVAFDEAAFGIDSLEEYFSLCYTKLIKSGFINMSELSRFTSK 326 (387)
T ss_pred ECCCCCHHHHHHHHHHHHCCCC-CEEEECCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 1899898999999999747998-889868889997874687201789856499999999999998699899999999978
Q ss_pred CCHHHCCCCC------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 3178818898------885289994797178471122677771465797698338887
Q gi|254781012|r 294 NGATWYGIPV------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 294 npa~~~gl~~------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
||||+|||.. ..|||+|+|++++|+++ .+||||+ |++++|+|+.
T Consensus 327 nPAki~gl~kG~i~~G~dADlvi~D~~~~~~v~-------~~~sp~e-G~~~~G~v~~ 376 (387)
T PRK08417 327 NPAEFLGLNSGVIEVGKEADLVLFDPNKKEIID-------DKFSLYY-GEELYGKIEA 376 (387)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEC-------CCCCCCC-CCEEEEEEEE
T ss_conf 899995988875089995778999299987979-------9878856-9898889999
No 11
>PRK08044 allantoinase; Provisional
Probab=100.00 E-value=0 Score=526.72 Aligned_cols=334 Identities=11% Similarity=0.090 Sum_probs=269.3
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 65586466423750881------7889874987418873999838-9514898989999999999983868846995013
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMP-NIDPPIITVDDACAYRQRILNALPPEYDFSPLMT 74 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MP-NT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~ 74 (349)
.++++||+||+|||||| |++.|+|+||++||||||++|| |+.|++++.+.+..+.+... .++.+++...
T Consensus 48 G~~v~PG~ID~HvH~~~pg~~~~e~~~t~s~AA~~GGvTtv~~mP~n~~p~~~~~~~~~~~~~~~~----~~~~vd~~~~ 123 (449)
T PRK08044 48 GLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRESIELKFDAAK----GKLTIDAAQL 123 (449)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH----CCCCCCEEEE
T ss_conf 998967889775056999864310488888999746855799787899987552999999999863----6754328998
Q ss_pred EEECCCCCHHHHHHHHHCCCEEEHHHCCCCCE--E-CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCC-------
Q ss_conf 45278999889987440687210221045510--0-2565410068899999999873982220257555554-------
Q gi|254781012|r 75 IYLTETTDPDDVEKGFTSQLVQAIKLYFAGST--T-NSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDI------- 144 (349)
Q Consensus 75 ~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~--~-~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~------- 144 (349)
++++..+ .+.+.++.+.+ +.++|.|+.... . .++....+...++++|+++++++.++++|||+.....
T Consensus 124 ~g~~~~~-~~~i~~l~~~g-~~~~k~f~~~~g~~~i~~~~~~~~d~~l~~~~~~~~~~g~~v~~H~E~~~i~~~~~~~~~ 201 (449)
T PRK08044 124 GGLVSYN-LDRLHELDEVG-VVGFKCFVATCGDRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAK 201 (449)
T ss_pred ECCCCCC-HHHHHHHHHCC-CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 1204787-78899887626-652567630357632247766679899999999998539969997998799999999998
Q ss_pred -----------CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCC
Q ss_conf -----------30014676545789999962069539970578589999987057----332023023100397886137
Q gi|254781012|r 145 -----------DIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHD 209 (349)
Q Consensus 145 -----------~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~ 209 (349)
..+..+++..+..+.+.+++.+|+++||+|+||++++++|+++| +||||||||||+||++++..
T Consensus 202 ~~g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~~hi~HiSs~~~~~~I~~ak~~G~~vt~Ev~ph~L~l~~~~~~~- 280 (449)
T PRK08044 202 REGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE- 280 (449)
T ss_pred HCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEEECHHHHCCCHHHHHH-
T ss_conf 7699653344477988999999999999888719838844535477899999999769984012035556189989842-
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHH--HHHCCCCHH
Q ss_conf 88831132134699999999999997699418971388865313321545--77544543679999999--972069999
Q gi|254781012|r 210 GLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQ--IFEEENKLE 285 (349)
Q Consensus 210 ~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~--~~~~~~~L~ 285 (349)
+++++|||||||+++||+|||+++++|+| |+|+||||||+.++|..++ +++|+.++++.+++++. +..+.++|+
T Consensus 281 -~~~~~k~~PPLR~~~d~~aL~~al~~G~I-d~i~SDHaP~~~~~K~~~~~~a~~Gi~g~et~l~ll~~~~v~~~~lsl~ 358 (449)
T PRK08044 281 -IGTLAKCSPPIRDQENQKGMWEKLFNGEI-DCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLP 358 (449)
T ss_pred -CCCEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf -69548888999997899999999857995-0998599999978918876648898651544799999999974998999
Q ss_pred HHHHHHHHCCHHHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 999998243178818898-------885289994797178471122677771465797698338887
Q gi|254781012|r 286 NLESFVSINGATWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 286 ~l~~~~s~npa~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
++++++|.||||+|||+. ..+||+|+|++++|+|+.+.+.||++||||+ |++++|+|+.
T Consensus 359 ~~v~~~s~nPAki~gl~~KG~I~~G~dADlvi~D~~~~~~v~~~~~~s~~~~sp~~-G~~~~G~v~~ 424 (449)
T PRK08044 359 MFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLKNEDLEYRHKVSPYV-GRTIGARITK 424 (449)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 99999816399985989888417999666899958997898878772758867846-9888889999
No 12
>PRK07575 dihydroorotase; Provisional
Probab=100.00 E-value=0 Score=523.01 Aligned_cols=327 Identities=17% Similarity=0.135 Sum_probs=263.2
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.++++||+||+|||||| ||+.++|+||++||||||++||||+|++++.+.+..+.+++.+.+. +++++..
T Consensus 50 G~~vlPG~ID~HvH~~~pg~~~ked~~tgs~AAa~GGvTtv~~mpnt~P~~~~~~~~~~~~~~~~~~~~----v~~~~~~ 125 (439)
T PRK07575 50 GLTLLPGVIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCL----VNYGFFI 125 (439)
T ss_pred CCEEECCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCE----ECCCEEE
T ss_conf 999955889765255899875220476658999849878999657888775548999999998601672----3342354
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCC-------------
Q ss_conf 5278999889987440687210221045510025654100688999999998739822202575555-------------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQ------------- 142 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~------------- 142 (349)
+.+..+. . +........++|.|++... .+..+.+...+.+++ +..+.++++|||+...
T Consensus 126 g~~~~~~-~---el~~~~~~~g~k~f~~~~~--~~~~~~~~~~l~~i~---~~~~~~i~~H~Ed~~~i~~~~~~~~g~~~ 196 (439)
T PRK07575 126 GATPDNL-P---DLLTANPTCGIKIFMGSSH--GPLLVDDEAALERIF---AEGRRLIAVHAEDQARIRARRELFAGITD 196 (439)
T ss_pred ECCCCCH-H---HHHHHCCCCCEEEEECCCC--CCEECCHHHHHHHHH---HHCCCEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 1158568-9---9997422374678612577--862036599999999---74797189834665799977887479888
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC--CCCEEEECCCCCCCHHHHHCCCCCCCEEE
Q ss_conf ---5430014676545789999962069539970578589999987057--33202302310039788613788831132
Q gi|254781012|r 143 ---DIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT--NIAGSITVHHLIINRNAIFHDGLNPHYYC 217 (349)
Q Consensus 143 ---~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak--~vtaEVTPHHL~lt~~d~~~~~~~~~~k~ 217 (349)
.......+++.....+++.+++.+++|+||+|+||++++++|+++| .||||||||||+|+++++.. +|+++||
T Consensus 197 ~~~~~~~~~~~~e~~ai~~~~~la~~~~~~~hi~hiSs~~s~~~i~~ak~~~Vt~ev~phhL~l~~~~~~~--~~~~~k~ 274 (439)
T PRK07575 197 PAIHSQIQDEEAALLATRLALKLSKKYQRRLHILHLSTGDEAELLRQDKPAWVTAEVTPQHLLLNTDAYAK--IGSLAQM 274 (439)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCEEEECHHHHHCCHHHHCC--CCCEEEE
T ss_conf 56705558899999999999999998498189995174899999876435881112321021068657444--6845998
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCC--CCCCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHC
Q ss_conf 1346999999999999976994189713888653133215457--7544543679999999-972069999999998243
Q gi|254781012|r 218 LPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCG--CAGIYTARNALNCLAQ-IFEEENKLENLESFVSIN 294 (349)
Q Consensus 218 nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~--~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~~~s~n 294 (349)
|||||+++||++||++|++|+| |+|+||||||+.++|..+|. +.|+.++++.+|++++ +.+++++|+++++++|.|
T Consensus 275 ~PPLRs~~d~~aL~~~l~~G~I-d~i~sDH~P~~~~~K~~~~~~a~~G~~g~e~~lpl~~~~~~~~~i~l~~~v~~~s~n 353 (439)
T PRK07575 275 NPPLRSPEDNEVLWQALLDGVI-DFIATDHAPHTLEEKAQPYPNSPSGMPGVETSLPLMLTAAMAGKCTVAQVVRWMSTA 353 (439)
T ss_pred CCCCCCHHHHHHHHHHHHCCCE-EEEEECCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 8999997999999988608976-899949998897882479876776732188899999999982880299999997235
Q ss_pred CHHHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 178818898-------885289994797178471122677771465797698338887
Q gi|254781012|r 295 GATWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 295 pa~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
|||+|||+. ..|||+|+|++++|+|+.+.++||++||||+ |++++|+|+.
T Consensus 354 PAkilgl~~kG~i~~G~dADlvl~D~~~~~~v~~~~~~sk~~~sp~~-g~~~~G~v~~ 410 (439)
T PRK07575 354 VARAYGIPNKGRIAPGYDADLVLVDLNTYRPVRREELLTKCGWSPFE-GWNLTGWPVT 410 (439)
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEECCCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 49864979888677898468899839998898757754668857857-9788878999
No 13
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=520.36 Aligned_cols=342 Identities=51% Similarity=0.932 Sum_probs=333.4
Q ss_pred CCEEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC
Q ss_conf 96558646642375088178898749874188739998389514898989999999999983868846995013452789
Q gi|254781012|r 1 MKKISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTET 80 (349)
Q Consensus 1 ~~~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~ 80 (349)
|.+|+|..++|+|+|+|||++++......+.+|...+.|||.+||++|.+.+.+|++||+++.+....|.+.+++|||++
T Consensus 2 ~~~l~i~rPdDwHlHLRdg~mL~~V~p~ts~~f~rAiIMPNL~pPvtt~~~a~aYr~rIl~a~p~~~~F~PLMtlYLtd~ 81 (344)
T COG0418 2 MQELTIRRPDDWHLHLRDGAMLKAVVPYTSRGFGRAIIMPNLVPPVTTVADALAYRERILKAVPAGHRFTPLMTLYLTDS 81 (344)
T ss_pred CEEEECCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
T ss_conf 60365268661457751730888762543422334898678898710479999999999972857778863379984699
Q ss_pred CCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99889987440687210221045510025654100688999999998739822202575555543001467654578999
Q gi|254781012|r 81 TDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDP 160 (349)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~ 160 (349)
.+++++..+...+.+.++|+|++|+|+|++.|+.+.+..+++||.|++.|+++++|+|.+....++.+||+.++++.++.
T Consensus 82 ~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifdrE~~Fi~~vl~p 161 (344)
T COG0418 82 TTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFDREAAFIESVLEP 161 (344)
T ss_pred CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99899999985595789985258864467678573788789999999719868970465775456113578789999999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9962069539970578589999987057-332023023100397886137888311321346999999999999976994
Q gi|254781012|r 161 LRNKLPNLKIILEHITTSNGIDYVNNAT-NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNP 239 (349)
Q Consensus 161 ~~a~~~~~~iHi~HiST~~sv~lir~ak-~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i 239 (349)
+..+++.+++.+.||||++++++|+++. ++.|.+|||||+||.+|+..++.+|+++|.|-+|.+.||+||++++.+|..
T Consensus 162 l~~~fP~LKIV~EHiTT~dav~~v~~~~~nlaATIT~hHL~~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~ 241 (344)
T COG0418 162 LRQRFPKLKIVLEHITTKDAVEYVKDANNNLAATITPHHLLLNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHP 241 (344)
T ss_pred HHHHCCCCEEEEEEECCHHHHHHHHHCCCCEEEEEEHHHEEEEHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 98658763699887150889999996486504673145602426566327878613551200654569999999846897
Q ss_pred EEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCEEE
Q ss_conf 18971388865313321545775445436799999999720699999999982431788188988852899947971784
Q gi|254781012|r 240 RFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIPVNTRKISLKRREQPIIF 319 (349)
Q Consensus 240 ~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~~~~~~i~l~d~~~~~~v 319 (349)
..|+|||+|||....|++-+||||+|+++.++++++++|++.++|++|..|.|.|+.++||||.+++.|+|++. +|.|
T Consensus 242 kfFlGtDSAPH~~~~Ke~~cgcAG~fsap~al~~~AevFE~~naL~~LeaF~S~nGp~fYglp~n~~~itL~k~--~~~i 319 (344)
T COG0418 242 KFFLGTDSAPHARSRKESACGCAGIFSAPFALPLYAEVFEEENALDNLEAFASDNGPKFYGLPRNDKTITLVKE--EWQV 319 (344)
T ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCCCCCEEEEEEC--CCCC
T ss_conf 27715898888654410056663101537689999999987267989998886548412156788863899843--5126
Q ss_pred CHHHCCCCCCEEECCCCEEECCEEE
Q ss_conf 7112267777146579769833888
Q gi|254781012|r 320 DEKITTSTGSITIFNPIFPLYWEVM 344 (349)
Q Consensus 320 ~~~~~~sk~~~tpF~~g~~l~w~V~ 344 (349)
+++....++.++||++|++|+|.|.
T Consensus 320 P~~i~~g~~~vvpf~aGe~L~W~v~ 344 (344)
T COG0418 320 PESIPFGDDIVVPFRAGETLSWSVK 344 (344)
T ss_pred CCEECCCCCCEEEECCCCEEEEEEC
T ss_conf 6454168884677438972665549
No 14
>PRK04250 dihydroorotase; Provisional
Probab=100.00 E-value=0 Score=519.65 Aligned_cols=317 Identities=19% Similarity=0.174 Sum_probs=250.7
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.++++||+||+|||||| |++.|+|+||++||||||++||||.||+++.+.+..++++. ..++.+++.++.
T Consensus 47 G~~vlPG~ID~hvH~~~pg~~~ke~~~sgs~AAa~GGvTtv~~mPnt~p~~~~~~~~~~~~~~~----~~~~~~d~~~~~ 122 (408)
T PRK04250 47 GKIILPGLIDVHVHLRDFEEKYKETIETGTKAALHGGITTVFDMPNTKPPIMDEKTLKLREGIF----EKKSYADYALGF 122 (408)
T ss_pred CCEEECCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHH----CCCCEEEEEEEE
T ss_conf 9989578896450678888530346887899998389359976788999868799999999984----769757883079
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCH--HHHHHH
Q ss_conf 527899988998744068721022104551002565410068899999999873982220257555554300--146765
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIF--DRELMF 153 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~--~~E~~~ 153 (349)
.++.+. .+....+.. ..|.|+..++ .++.. ..+. +..++....+++|||++.+..... ..++|.
T Consensus 123 ~~~~~~-~~~~~~~~~-----~~k~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~vHaEd~~l~~~~~~rP~~aE~ 188 (408)
T PRK04250 123 LLAGNC-GEAKPVKAD-----FYKIFMGAST----GGIYS-ENFE---EDYACAPDIVSVHAEDPEIIRRYPERPPEAEV 188 (408)
T ss_pred EEECCC-CHHHHHHHH-----HHHHEECCCC----CCHHH-HHHH---HHHHHCCCCEEECCCCHHHHHCCCCCCHHHHH
T ss_conf 960773-036788887-----7632303466----50657-8799---99986599789957997888448999999999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC--CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf 45789999962069539970578589999987057--3320230231003978861378883113213469999999999
Q gi|254781012|r 154 IDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT--NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLR 231 (349)
Q Consensus 154 ~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak--~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~ 231 (349)
....+++.+++.+++++||+|+||++++++|++++ .||||||||||+||++++. .++++|||||||+++||+|||
T Consensus 189 ~ai~r~~~la~~tg~~lhi~HvSs~~~l~~I~~a~~~~vt~Et~ph~L~l~~~~~~---~~~~~k~~PPLRs~~dr~aL~ 265 (408)
T PRK04250 189 RAIKKALEAAKKLKKPLHICHVSTKDGLKEILKSNLPWVSFEVTPHHLFLTRKDYE---RNPLLKVYPPLRSEEDRRALW 265 (408)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEHHHHHCCHHHHC---CCCCEEECCCCCCHHHHHHHH
T ss_conf 99999999999849969999458899999999841798399981226447837757---568749789999788899999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHCCHHHCCCCC------C
Q ss_conf 9997699418971388865313321545775445436799999999-72069999999998243178818898------8
Q gi|254781012|r 232 KAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQI-FEEENKLENLESFVSINGATWYGIPV------N 304 (349)
Q Consensus 232 ~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~-~~~~~~L~~l~~~~s~npa~~~gl~~------~ 304 (349)
+++. +| |+|+||||||+.++|+. +.+|+.++++.+|+++.. ..+.++|++++++||+||||+|||+. .
T Consensus 266 ~~l~--~I-d~i~SDH~P~~~e~K~~--~~~G~~glEt~lpl~~~~v~~g~isl~~lv~~~s~nPAki~gl~~~~i~~G~ 340 (408)
T PRK04250 266 ENFS--RI-PIIASDHAPHTLEDKEA--GAAGLPGLETEVALLLDAANKGMITLKDIVEKMHINPARIFGIKNKGFEEGK 340 (408)
T ss_pred HHHC--CC-CEEEECCCCCCHHHHCC--CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHCCCCCCCCCCC
T ss_conf 8626--88-88983688889788344--7789870888999999999817988999999974275996497888847998
Q ss_pred CCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 85289994797178471122677771465797698338887
Q gi|254781012|r 305 TRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 305 ~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
.+||+|+|++++|+|+.+.++||++||||+ |++++|+|+.
T Consensus 341 dADlvi~Dp~~~~~v~~~~~~s~~~~spf~-G~~l~G~v~~ 380 (408)
T PRK04250 341 DADFTIVDMKKEWTIKAEEFYTKAGWTPYE-GWKVKGKVIM 380 (408)
T ss_pred CCCEEEECCCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 675899949997898857752648857845-9788779999
No 15
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=100.00 E-value=0 Score=517.64 Aligned_cols=312 Identities=18% Similarity=0.176 Sum_probs=244.3
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.+|+|||+||+|||||| ||+.|||+||++||||+|++||||+|++++.+.+..+++++...+. +++.++.
T Consensus 1 ~~lvlPG~iD~HvH~r~pg~~~~ed~~sgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~----~d~~~~~ 76 (344)
T cd01316 1 RTIRLPGLIDVHVHLREPGATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKAR----CDYAFSI 76 (344)
T ss_pred CEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC----CCEEEEE
T ss_conf 969826888005777999987746499999999847977997799998997999999999997431773----2112688
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 52789998899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
+.+..+. .++.+.... ..+.+++..... ......+.....+.+.. .....+++.|||.. .
T Consensus 77 ~~~~~~~-~~l~~l~~~--~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~pi~~~aE~~--------------~ 136 (344)
T cd01316 77 GATSTNA-ATVGELASE--AVGLKFYLNETF--STLILDKITAWASHFNA-WPSTKPIVTHAKSQ--------------T 136 (344)
T ss_pred EECCCCH-HHHHHHHHC--CCCEEEEECCCC--CHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHH--------------H
T ss_conf 8526767-899998754--683899963556--35777799999999863-64569731422389--------------9
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf 789999962069539970578589999987057----3320230231003978861378883113213469999999999
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLR 231 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~ 231 (349)
....+.+++.+++++||+||||++++++|++|| +||||||||||+||++|+. ++.+|||||||+++||+|||
T Consensus 137 ~~~~l~la~~~~~~lHi~HiSt~~~v~lI~~ak~~G~~Vt~Et~ph~L~l~~~~~~----~~~~k~~PPLR~~~d~~aL~ 212 (344)
T cd01316 137 LAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLP----RGQYEVRPFLPTREDQEALW 212 (344)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHH----CCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999987998999946887799999999872897478634554208775763----35987288999978999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHCCHHHCCCCCCCCEEEE
Q ss_conf 9997699418971388865313321545775445436799999999-720699999999982431788188988852899
Q gi|254781012|r 232 KAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQI-FEEENKLENLESFVSINGATWYGIPVNTRKISL 310 (349)
Q Consensus 232 ~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~-~~~~~~L~~l~~~~s~npa~~~gl~~~~~~i~l 310 (349)
++| |+| |+|+||||||+.++|.....++|+.|+++.+|+++.. ..+.++|++++++||.||||+|||+++++.+++
T Consensus 213 ~~l--~~I-D~IaSDHaP~~~~~K~~~~~~~G~~GlEt~lp~~~~~v~~g~lsl~~lv~~~s~nPAki~gl~~~~g~~v~ 289 (344)
T cd01316 213 ENL--DYI-DCFATDHAPHTLAEKTGNKPPPGFPGVETSLPLLLTAVHEGRLTIEDIVDRLHTNPKRIFNLPPQSDTYVE 289 (344)
T ss_pred HHH--HCC-CEEECCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 754--227-78971677657655022469998562776899999999839978999999994989997288988898899
Q ss_pred EECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 94797178471122677771465797698338887
Q gi|254781012|r 311 KRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 311 ~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
+|++++|+|+.+.+.||++||||+ |++++|+|+.
T Consensus 290 vD~~~~~~i~~~~~~Sk~~~spfe-G~~l~G~v~~ 323 (344)
T cd01316 290 VDLDEEWTIPKNPLQSKKGWTPFE-GKKVKGKVQR 323 (344)
T ss_pred ECCCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 879997898814272758867745-9888889999
No 16
>PRK07627 dihydroorotase; Provisional
Probab=100.00 E-value=0 Score=509.73 Aligned_cols=330 Identities=14% Similarity=0.069 Sum_probs=262.9
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.++++||+||+|||||+ +++.++|+||++||||||++||||.|++++++.++.++.+........+. ..+
T Consensus 50 G~~V~PG~ID~HvH~~~pg~~~~e~~~s~~~AA~~GGvTtv~~~p~t~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 125 (425)
T PRK07627 50 GLIVAPGLVDLSARLREPGYEYKATLESEMAAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHVY----PLG 125 (425)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEE----EEC
T ss_conf 9999789997775568898541010552789997188789985798888888789999999999855898799----855
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC---------
Q ss_conf 52789998899874406872102210455100256541006889999999987398222025755555430---------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDI--------- 146 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~--------- 146 (349)
+++.+..++.+.++......+.. .+...+.++.+...++++|++++.++.++.+|||+..+....
T Consensus 126 ~~~~~~~~~~l~e~~~l~~~G~~------~f~~~~~~~~d~~~l~~~~~~a~~~g~~~~~h~ed~~~~~~~~~~~g~~~~ 199 (425)
T PRK07627 126 ALTVGLKGEVLTEMVELTEAGCV------GFSQANVPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRGGVAASGAVAS 199 (425)
T ss_pred CEECCCCCCHHHHHHHHHHCCCE------EEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCCCCCCHH
T ss_conf 43458882024307889864864------760366335799999998876403695799715657886187554664033
Q ss_pred ------HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf ------014676545789999962069539970578589999987057----3320230231003978861378883113
Q gi|254781012|r 147 ------FDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYY 216 (349)
Q Consensus 147 ------~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k 216 (349)
....++..+..+.+.+++.+|+++||+|+||++++++|++|| +||||||||||+|+++|+. .+++++|
T Consensus 200 ~~gl~~~p~~aE~~ai~~~~~la~~~g~~~hi~Hiss~~~l~~I~~ak~~G~~vt~Et~ph~L~l~~~~~~--~~~~~~k 277 (425)
T PRK07627 200 RLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAAGLALVRAAKAEGLPVTCDVGVNHVHLIDVDIG--YFDSQFR 277 (425)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHCCCHHHHC--CCCCCEE
T ss_conf 22898898344034588999999872996899705879999999989877995799971753027767856--5676243
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHH
Q ss_conf 2134699999999999997699418971388865313321545--77544543679999999-97206999999999824
Q gi|254781012|r 217 CLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQ-IFEEENKLENLESFVSI 293 (349)
Q Consensus 217 ~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~~~s~ 293 (349)
||||||+++||++||+++++|+| |+|+||||||+.++|..++ +++|+.|.++.+|+++. +.+++++|++++++||.
T Consensus 278 ~~PPLR~~~d~eaL~~~l~~G~I-d~i~SDH~p~~~~~K~~~~~~~~~G~~G~e~~lpl~l~~~~~~~lsL~~~v~~~s~ 356 (425)
T PRK07627 278 LDPPLRSQRDRDAIRAALADGTI-DAICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTLKWADEARVPLARALARITS 356 (425)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 24887977889999878646987-89964888889767658703287974807659999999998169899999999979
Q ss_pred CCHHHCCCCC------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 3178818898------885289994797178471122677771465797698338887
Q gi|254781012|r 294 NGATWYGIPV------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 294 npa~~~gl~~------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
||||+|||+. ..+||+|+||+++|+|+.+.++||++||||+ |++++|+|+.
T Consensus 357 nPAk~~Gl~kG~i~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~e-G~~~~G~v~~ 413 (425)
T PRK07627 357 APARVLGLPAGRLAEGAPADLCVFDPDAHWRVEPRALKSQGKNTPFL-GYELPGRVRA 413 (425)
T ss_pred HHHHHHCCCCCCCCCCCCCEEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 99999699988507999642999948997898836660768857833-9788889999
No 17
>PRK02382 dihydroorotase; Provisional
Probab=100.00 E-value=0 Score=502.59 Aligned_cols=328 Identities=16% Similarity=0.151 Sum_probs=268.6
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.++++||+||+|||||+ +++.++++||++||||||++||||.||+++.+.+..+.+. ...+..+++++.+
T Consensus 48 G~~v~PG~ID~HvH~~~pg~~~~ed~~tgs~aAa~GGvTTvv~~p~t~p~~~~~~~~~~~~~~----~~~~~~vd~~~~~ 123 (440)
T PRK02382 48 GALTLPGGIDVHVHFREPGMEHKETWYTGSCSAAAGGVTTVVDQPNTDPPTTDAESFKEKLAL----AARKSIVDFGING 123 (440)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHH----HCCCCEEEEEEEE
T ss_conf 999968999745066989865435565668999829925993577889994779999999998----5668656898887
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCC-----------
Q ss_conf 527899988998744068721022104551002565410068899999999873982220257555554-----------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDI----------- 144 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~----------- 144 (349)
.++.+.....+.+... ....+.|+...+. +. ..+...+.++|+++++++.++++|||+.....
T Consensus 124 ~~t~~~~~~~l~~~g~---~~~~~~~~~~~~~--~~-~~~~~~l~~~l~~~~~~~~~v~~H~Ed~~~~~~~~~~~~~~~~ 197 (440)
T PRK02382 124 GVTGNWELEELWRLGL---FAFGEIFMAESTG--GM-GIDEELFAEALKEITRLDALATIHAEDEDMRLELEKLLKGDDS 197 (440)
T ss_pred EECCCCCHHHHHHCCC---CCEEEEEEECCCC--CC-CCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCC
T ss_conf 6359978899975677---7231699973898--74-7299999999999986598699933887899986787568868
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECC
Q ss_conf -----300146765457899999620695399705785899999870573320230231003978861378883113213
Q gi|254781012|r 145 -----DIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLP 219 (349)
Q Consensus 145 -----~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nP 219 (349)
..+..+++..+..+++.+++.+++++||+|+||++++++||+++ ||||||||||+|+++++.. +++++||||
T Consensus 198 ~~~~~~~rp~~~E~~av~r~i~la~~~g~~vhi~H~st~~~v~~ir~a~-vt~ev~ph~L~l~~~~~~~--~~~~~k~~P 274 (440)
T PRK02382 198 ADAHSAYRPNAAEISAVERALEVARELGARIHICHISTPEGVDLIREPG-VTCEVTPHHLFLSRRDWDR--LGTFGKMNP 274 (440)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCE-EEEEECCCHHHCCHHHHHH--HCCCCCCCC
T ss_conf 6770366988999999999999887539935877548689996543554-8999721355487166665--076301378
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHCCH
Q ss_conf 4699999999999997699418971388865313321545--77544543679999999-97206999999999824317
Q gi|254781012|r 220 IPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQ-IFEEENKLENLESFVSINGA 296 (349)
Q Consensus 220 PlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~~~s~npa 296 (349)
|||+++||++||+++.+|+| |+|+||||||+.++|..++ ++.|+.+.++.+|++.. +..+.++|++++++||.|||
T Consensus 275 PlR~~~d~~aL~~~l~~G~i-d~iasDhaP~~~~~K~~~~~~a~~G~~g~et~lp~~~~~v~~~~lsle~~v~~~s~nPA 353 (440)
T PRK02382 275 PLRSEHRRKALWNRLNDGTI-DMVASDHAPHTEAEKDADIWDAPSGVPGVETMLPLMLAAVRKNELPLERVIDVTSANPA 353 (440)
T ss_pred CCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 88868899999998755992-18843888878677367802166898639999999999887289689999999988899
Q ss_pred HHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEE
Q ss_conf 8818898-------88528999479717847112267777146579769833888
Q gi|254781012|r 297 TWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVM 344 (349)
Q Consensus 297 ~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~ 344 (349)
|+|||+. ..|||+|+||+++|+|+.+.++||++||||+ |+++.|+|.
T Consensus 354 ki~Gl~~KG~I~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~~-G~~~~~~~~ 407 (440)
T PRK02382 354 DIFGLDGKGHIAAGYDADLVIVDPDDARPIKGDMLHSKAGWTPFE-GMDAVFPEM 407 (440)
T ss_pred HHHCCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEE
T ss_conf 985989885007999777899949998898868854427988837-958302799
No 18
>PRK13404 dihydropyrimidinase; Provisional
Probab=100.00 E-value=0 Score=502.64 Aligned_cols=332 Identities=13% Similarity=0.112 Sum_probs=262.8
Q ss_pred CEEEECCCCEEEEECCC---------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 65586466423750881---------788987498741887399983895148989899999999999838688469950
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD---------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPL 72 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re---------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~ 72 (349)
.++++||+||+|||||+ +|+.+||+||++||||||++|||+.|+.+..+.+..+++++... +.+++.
T Consensus 49 G~~V~PG~ID~HvH~~~p~~~G~~~~ed~~tgs~aAa~GGvTtvv~~~~~~~~~~~~~~~~~~~~~a~~~----~~vd~~ 124 (476)
T PRK13404 49 GRLVLPGGVDSHCHIDQPSSDGIMMADDFESGTVSAAFGGTTTVIPFAAQHRGQSLRAAVEDYHARAAGN----AVIDYA 124 (476)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCC----CEEEEE
T ss_conf 9989078887235779876688452230999999998588149971688999987699999999984368----558764
Q ss_pred EEEEECC---CCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCC-----
Q ss_conf 1345278---99988998744068721022104551002565410068899999999873982220257555554-----
Q gi|254781012|r 73 MTIYLTE---TTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDI----- 144 (349)
Q Consensus 73 ~~~~lt~---~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~----- 144 (349)
+++.++. +...+++..+... ...++|+|+.. +...+. ...+.++|+++++.+.++++|||+.+...
T Consensus 125 ~~~~~~~~~~~~~~~~l~~l~~~-G~~~~k~~~~~----~~~~~~-d~~l~~~~~~a~~~g~~v~~HaE~~~~~~~~~~~ 198 (476)
T PRK13404 125 FHLIVADPTPEVLEEELPALIAR-GYTSFKVFMTY----DLLKLG-DREILDVLTVARRHGAMVMVHAENNDCIAWLTKR 198 (476)
T ss_pred EEEEEECCCHHHHHHHHHHHHHC-CCCEEEEEECC----CCCCCC-HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
T ss_conf 57787348744689999999977-96669998548----996338-2999999999986398799944887899999999
Q ss_pred -------------CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHH
Q ss_conf -------------30014676545789999962069539970578589999987057----3320230231003978861
Q gi|254781012|r 145 -------------DIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIF 207 (349)
Q Consensus 145 -------------~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~ 207 (349)
.....+++.....+++.+++.+|+++||+|+||++++++|++|| +||||||||||+||++|+.
T Consensus 199 ~~~~G~~~~~~~~~~rP~~~E~~ai~r~~~la~~tg~~lhi~HiSs~~~~~~i~~ak~~G~~Vt~Et~ph~L~lt~~d~~ 278 (476)
T PRK13404 199 LLAAGLTAPKYHAISRPMLAEREATHRAISLAELVDVPILIVHVSTREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLD 278 (476)
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCHHHHCCHHHHC
T ss_conf 98668975101545588999999999999999985997689965879999999999986991323214003208898967
Q ss_pred CCC-CCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHC--------CC--CCCCCCCHHHHHHHHHH
Q ss_conf 378-88311321346999999999999976994189713888653133215--------45--77544543679999999
Q gi|254781012|r 208 HDG-LNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKES--------SC--GCAGIYTARNALNCLAQ 276 (349)
Q Consensus 208 ~~~-~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~--------~~--~~~g~~~~~~~~~~~~~ 276 (349)
..+ .+..++||||||+++||++||+++++|+| |+|+||||||+.++|.. +| .+.|+.+.++.+|+++.
T Consensus 279 ~~~~~g~~~~~~PPlR~~~d~~aL~~~l~~G~i-d~i~sDHaP~~~~~~~~~~~~~~~~~f~~~~~Gipg~e~~lp~l~~ 357 (476)
T PRK13404 279 RPGMEGAKYICSPPPRDAANQEALWQGLELGTF-ESFSSDHAPFRFDDTAGKLAAGAEPSFPQIANGIPGVETRLPLLFS 357 (476)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCCCCHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHHH
T ss_conf 667556325716998876679999975625973-4997265641131101112046778853478988405678999989
Q ss_pred --HHHCCCCHHHHHHHHHHCCHHHCCCCCC--------CCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf --9720699999999982431788188988--------85289994797178471122677771465797698338887
Q gi|254781012|r 277 --IFEEENKLENLESFVSINGATWYGIPVN--------TRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 277 --~~~~~~~L~~l~~~~s~npa~~~gl~~~--------~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
+..+.++|++++++||.||||+|||.++ .|||+|+||+++|+|+.+.++||++||||+ |++++|+|+.
T Consensus 358 ~~v~~g~lsl~~~v~~~s~nPAki~Gl~~~KG~i~~G~dADlvI~Dp~~~~~v~~~~~~sk~~~sp~~-G~~~~G~v~~ 435 (476)
T PRK13404 358 EGVVKGRISLNQFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDEEVTISNADLHHAADYTPFE-GMRVTGWPVT 435 (476)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 99982998699999999888999839887887446898432999939986898825562538878807-9888889999
No 19
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type; InterPro: IPR004721 Dihydroorotase belongs to MEROPS peptidase family M38 (clan MJ), where it is classified as a non-peptidase homologue. DHOase catalyses the third step in the de novo biosynthesis of pyrimidine, the conversion of ureidosuccinic acid (N-carbamoyl-L-aspartate) into dihydroorotate. Dihydroorotase binds a zinc ion which is required for its catalytic activity . In bacteria, DHOase is a dimer of identical chains of about 400 amino-acid residues (gene pyrC). In the metazoa, DHOase is part of a large multi-functional protein known as 'rudimentary' in Drosophila melanogaster and CAD in mammals and which catalyzes the first three steps of pyrimidine biosynthesis . The DHOase domain is located in the central part of this polyprotein. In yeast, DHOase is encoded by a monofunctional protein (gene URA4). However, a defective DHOase domain is found in a multifunctional protein (gene URA2) that catalyzes the first two steps of pyrimidine biosynthesis. The comparison of DHOase sequences from various sources shows that there are two highly conserved regions. The first located in the N-terminal extremity contains two histidine residues suggested to be involved in binding the zinc ion. The second is found in the C-terminal part. Members of this family of proteins are predicted to adopt a TIM barrel fold . This family represents the homodimeric form of dihydroorotase 3.5.2.3 from EC. It is found in bacteria, plants and fungi; URA4 of yeast is a member of this group of sequences. ; GO: 0004151 dihydroorotase activity, 0019856 pyrimidine base biosynthetic process.
Probab=100.00 E-value=0 Score=508.06 Aligned_cols=340 Identities=49% Similarity=0.887 Sum_probs=325.3
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC
Q ss_conf 55864664237508817889874987418-87399983895148989899999999999838688469950134527899
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAK-NFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTETT 81 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aG-G~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~ 81 (349)
+|.|-.++|+|+|+|||++++......+- ||...++|||..||++|.+.+.+|++|++++.+....|.+.+++||+++.
T Consensus 1 ~l~l~~p~D~HlHvRega~lk~V~P~~~~~Gfs~A~iMPNL~pP~~~~~~~~~Y~~~il~~~p~G~~f~pLMslYL~d~l 80 (364)
T TIGR00856 1 ELTLGRPDDWHLHVREGAMLKAVLPYTSEGGFSRAIIMPNLKPPVTTVDRAIEYRERILKAVPAGGDFTPLMSLYLTDDL 80 (364)
T ss_pred CCCCCCCCCEEEECCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 90005777506534702355214773113651489977888777478788999999999855588985621466416898
Q ss_pred CHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCH--HHHHHHHHHHHHHCCCCEECCCCCCC---CC---CCCHHHHHHH
Q ss_conf 9889987440687210221045510025654100--68899999999873982220257555---55---4300146765
Q gi|254781012|r 82 DPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRN--IDRVMPVLERMETIGMPLCIHGEILN---QD---IDIFDRELMF 153 (349)
Q Consensus 82 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~--~~~~~~~le~~~~~~~~i~~H~E~~~---~~---~~~~~~E~~~ 153 (349)
+++++..+.....+.++|+||+|+|||++.|+.+ ....+++|+.|++.|.++++|+|.++ .+ +++.+||..+
T Consensus 81 ~p~el~~A~~~~~v~~~K~YPaG~TTNs~~Gv~~~~~~~~~~vL~~m~~~~l~L~~HgE~t~vhdgdkePI~~ld~E~~f 160 (364)
T TIGR00856 81 TPEELEEAKEKHAVRAVKLYPAGATTNSAAGVTDLLIEAILPVLEAMQKVGLPLLLHGEVTSVHDGDKEPIDILDREELF 160 (364)
T ss_pred CHHHHHHHHHCCCEEEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHCHHHHH
T ss_conf 98899989754964899725888620511168713467899999988762983663167776556788753210354676
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCC---------CCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCH
Q ss_conf 457899999620695399705785899999870573---------32023023100397886137888311321346999
Q gi|254781012|r 154 IDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATN---------IAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKRE 224 (349)
Q Consensus 154 ~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~---------vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~ 224 (349)
++..|..+..+++.+||.|.||||.+++++|+.+.+ +.|.+|||||+||.+|+.+++++|+.+|.|-||.+
T Consensus 161 ~~~~L~~L~~~fP~LkiilEH~t~~~ai~~i~~~n~~vkkatdvk~aATlT~~HL~~~~d~l~~Gg~~Ph~fCkP~~K~~ 240 (364)
T TIGR00856 161 IEKVLEPLREKFPKLKIILEHITTEDAIKLIEDINNRVKKATDVKLAATLTPHHLLFTRDDLLGGGVNPHLFCKPILKRK 240 (364)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 89998999862776418998529889999998640001012101131031077887307888259857501166524685
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC-CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCC
Q ss_conf 99999999997699418971388865313321545-77544543679999999972069999999998243178818898
Q gi|254781012|r 225 KHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC-GCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIPV 303 (349)
Q Consensus 225 ~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~-~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~~ 303 (349)
+||++|++++.+|....++|||+|||.+..|+.-+ +|||+|+++.++++++++||+.++|++|..|.|.|+..+|||+.
T Consensus 241 ~d~~~L~~~a~sg~P~~flGsDSAPH~~~~K~s~~G~CAG~ysa~~al~~~A~~FE~~NAL~~L~AF~S~~g~~fY~l~~ 320 (364)
T TIGR00856 241 KDQKALLKLAVSGKPKFFLGSDSAPHARSKKESACGGCAGVYSAPIALPAYAEVFEEVNALENLEAFVSDNGPSFYGLPD 320 (364)
T ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCCCCCCCCC
T ss_conf 66899999987179825526787642120664446846101027789999999986406053146356522641025664
Q ss_pred C----CCEEEEEECCCCEEECHHHCCCC-CCEEECCCCEEECCEEE
Q ss_conf 8----85289994797178471122677-77146579769833888
Q gi|254781012|r 304 N----TRKISLKRREQPIIFDEKITTST-GSITIFNPIFPLYWEVM 344 (349)
Q Consensus 304 ~----~~~i~l~d~~~~~~v~~~~~~sk-~~~tpF~~g~~l~w~V~ 344 (349)
+ +..|+|++ +||.|++.+...+ .++.||.+|+++.|.|+
T Consensus 321 nev~~~~~~~L~k--~e~~iP~~~~~~~d~~l~pl~AGe~l~W~~~ 364 (364)
T TIGR00856 321 NEVLSSKKARLVK--KEQVIPEEISLLEDEKLVPLRAGETLSWSVR 364 (364)
T ss_pred CCCCCHHHHHHCC--CCCCCHHHCCCCCCCCEEEECCCCEEEEECC
T ss_conf 2337401421012--6651502216788662667527874775109
No 20
>PRK09236 dihydroorotase; Reviewed
Probab=100.00 E-value=0 Score=499.03 Aligned_cols=329 Identities=20% Similarity=0.194 Sum_probs=262.7
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
..+++||+||+|||||| |++.++++||++||||||++||||.|++++.+.+..++++.... ..+++.++.
T Consensus 49 G~~v~PG~ID~H~H~~epg~~~ke~~~s~s~aA~~GGvTtv~~mp~t~p~~~~~~~l~~~~~~a~~~----~~~~~~~~~ 124 (444)
T PRK09236 49 GRYLLPGMIDDQVHFREPGLTHKGDIASESRAAVAGGITSFMDMPNTNPPTTTLEALEAKYDIAAGR----SWANYSFYF 124 (444)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC----CEEEEEEEE
T ss_conf 9999368897222548999754352667789998489139973588899867899999999985348----704599760
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCC-------------
Q ss_conf 5278999889987440687210221045510025654100688999999998739822202575555-------------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQ------------- 142 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~------------- 142 (349)
+.+.. ..+++...... ...++|+|++.+++ +..+.+...+.++| ++.+.++++|||+...
T Consensus 125 g~~~~-~~~~i~~l~~~-~~~g~k~f~g~s~g--~~~~~~~~~l~~~~---~~~~~~~~~H~e~~~~i~~~~~~~~~~~g 197 (444)
T PRK09236 125 GATND-NLDEIKALDPK-RVCGVKVFMGASTG--NMLVDNPETLERIF---RDSPTLIATHCEDTPTIKANEAKYREKYG 197 (444)
T ss_pred CCCCC-CHHHHHHHHHC-CCCEEEEEECCCCC--CCCCCCHHHHHHHH---HHCCCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 65588-69999865553-48669999326788--74046499999999---75898699946885899988999998728
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHC----CCCCEEEECCCCCCCHHHHHCCCC
Q ss_conf -------543001467654578999996206953997057858999998705----733202302310039788613788
Q gi|254781012|r 143 -------DIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNA----TNIAGSITVHHLIINRNAIFHDGL 211 (349)
Q Consensus 143 -------~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~a----k~vtaEVTPHHL~lt~~d~~~~~~ 211 (349)
+...+.+|++.....+++.+++.+|+++||+|+||++++++++++ ++||||||||||+|+++++.. +
T Consensus 198 ~~~~~~~h~~~r~~~a~~~~~~~ai~la~~~g~~lhi~Hist~~~l~li~~a~~~g~~it~e~~~h~L~~~~~~~~~--~ 275 (444)
T PRK09236 198 EDLPAELHPLIRSREACYKSSSLAVSLAKKHGTRLHVLHLSTAKELSLFENGPLEEKRITAEVCVHHLWFDDSDYAR--L 275 (444)
T ss_pred CCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEECCCEECCCHHHHHH--C
T ss_conf 88883225554767789999999999998609978999568589999999989818987403011110468778864--4
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHHHH-HCCCCHHHHH
Q ss_conf 831132134699999999999997699418971388865313321545--7754454367999999997-2069999999
Q gi|254781012|r 212 NPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQIF-EEENKLENLE 288 (349)
Q Consensus 212 ~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~~~-~~~~~L~~l~ 288 (349)
++++|||||||+++||+|||+++++|.| |+|+||||||+.++|+.+| ++.|+.++++++|++++.+ .+.++|++++
T Consensus 276 ~~~~k~~Pplr~~~d~~aL~~al~~g~i-d~I~sDHaP~~~~~K~~~~~~a~~G~~gle~~lp~~l~~v~~g~lsl~~~v 354 (444)
T PRK09236 276 GNLIKCNPAIKTASDREALRQALANGRI-DVIATDHAPHTWEEKQGPYFQAPSGLPLVQHALVALLELVHEGKLSLEQVV 354 (444)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCCHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9710136875856779999999747967-999768877677672488401999841699999999999980874699999
Q ss_pred HHHHHCCHHHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 998243178818898-------885289994797178471122677771465797698338887
Q gi|254781012|r 289 SFVSINGATWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 289 ~~~s~npa~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
++||.||||+|||+. ..+||+|+||+++|+|+.+.+.||++||||+ |++++|+|..
T Consensus 355 ~~~s~nPA~i~GL~~kG~I~~G~dADlvl~Dp~~~~~v~~~~~~s~~~~sp~~-G~~~~G~v~~ 417 (444)
T PRK09236 355 EKTAHAPAELFAIEDRGFIREGYWADLVLVDPNSPWTVTRENILSKCGWSPFE-GTTFRSRVAT 417 (444)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 99857699984989888668998453899919997898824373668878847-9788779999
No 21
>PRK00369 pyrC dihydroorotase; Provisional
Probab=100.00 E-value=0 Score=502.67 Aligned_cols=305 Identities=18% Similarity=0.137 Sum_probs=233.4
Q ss_pred EEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 5586466423750881------7889874987418873999838951489898999999999998386884699501345
Q gi|254781012|r 3 KISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIY 76 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~ 76 (349)
++++||+||+|||||| ||+.|||+||++||||||++||||+|++++++.+..++++..+. ..+++.+.++
T Consensus 44 ~~VlPG~ID~HvH~rePG~~~kEd~~sgt~AAaaGGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~----s~vd~~~~~~ 119 (393)
T PRK00369 44 SLILPGVIDMHVHLRGLKLSYKEDVASATSEAAYGGITLVADMPNTVPPLNTPEAIKEKLAELENY----SRVDYGVYSG 119 (393)
T ss_pred CEEECCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC----CCCCEEEEEE
T ss_conf 988069888044469999876575999999998099489998999999989899999999985648----7246899942
Q ss_pred ECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHH-HHHHHHH
Q ss_conf 278999889987440687210221045510025654100688999999998739822202575555543001-4676545
Q gi|254781012|r 77 LTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFD-RELMFID 155 (349)
Q Consensus 77 lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~-~E~~~~~ 155 (349)
++++ .+++. ..+ ..++|.|+. + ......++.++..+.++++|||++........ ++..+.+
T Consensus 120 v~~~--~~~l~---~lg-~~g~k~f~~-------d-----~~~~~~~~~~~~~~~l~~~HaE~~~~~~~~~~~~r~~~~E 181 (393)
T PRK00369 120 VTKE--YEEVD---KLP-IAGYKIYPE-------D-----LEREETKRVLEKSKKLKILHPEIPLALKGLRRLRRNCWAE 181 (393)
T ss_pred CCCC--HHHHH---HCC-CCEEEEECC-------C-----CCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCHHHH
T ss_conf 1674--55576---466-975999888-------8-----8789999999867997099478877763525520745899
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 78999996206953997057858999998705733202302310039788613788831132134699999999999997
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAAL 235 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~ 235 (349)
.. ++. ......|+||+|+|+.++|+..|+ +.+|||||||||+||+++ ++.+|||||||+++||+|||++|.
T Consensus 182 ~~-ai~-~~~~~ar~Hi~h~Ss~e~ir~AK~-~G~t~Ev~phhL~l~~e~------~~~~kv~PPLR~~~D~~aL~~~l~ 252 (393)
T PRK00369 182 IA-ALE-LVKGAANVHITHASNPETVRIAKK-LGFTVDITPHHLLVDGER------DCLSKVNPPIRDYGERLKLLKALF 252 (393)
T ss_pred HH-HHH-HHHHCCCEEEEECCCHHHHHHHHH-CCCEEEEEEHHHHCCCCC------CCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99-999-986149699993684999999986-699079975684025535------667313899899789999998744
Q ss_pred CCCCEEEEECCCCCCCHHHHHCCCC--CCCCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHCCHHHCCCCC------CCC
Q ss_conf 6994189713888653133215457--7544543679999999-972069999999998243178818898------885
Q gi|254781012|r 236 SGNPRFFLGTDSAPHWDSSKESSCG--CAGIYTARNALNCLAQ-IFEEENKLENLESFVSINGATWYGIPV------NTR 306 (349)
Q Consensus 236 ~G~i~d~I~TDHAPH~~eeK~~~~~--~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~~~s~npa~~~gl~~------~~~ 306 (349)
| | |+|+||||||+.++|..+|. ++|+.|+++.+|++++ +..+.++|++++++||.||||+|||+. ..+
T Consensus 253 d--I-D~IaSDHaPh~~eeK~~~f~~ap~Gi~GlEt~lplll~~V~~g~lsl~~lv~l~s~nPAki~GL~kG~i~~G~dA 329 (393)
T PRK00369 253 E--V-DAVASDHAPHSSWEKWMPFEICPPGIAALSFTPPFIYTLVFKGLLSIERAVSLTSTNPSRILGIPYGEIREGYRA 329 (393)
T ss_pred C--C-CEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 7--7-889817888997881565435468704078899999999983889999999999887999959888860799976
Q ss_pred EEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 289994797178471122677771465797698338887
Q gi|254781012|r 307 KISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 307 ~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
||+|+|+++ |++... +||++||||+ |++++|+|++
T Consensus 330 Dlvi~D~~~-~~~~~~--~Sk~~~tPfe-G~~l~G~v~~ 364 (393)
T PRK00369 330 NFTVIQLER-WRYSTK--YSKVIETPLD-GFSLDAAVYA 364 (393)
T ss_pred CEEEEECCC-CEECCC--HHCCCCCCCC-CCEEEEEEEE
T ss_conf 089993875-565342--1058988867-9688778999
No 22
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=100.00 E-value=0 Score=491.97 Aligned_cols=330 Identities=21% Similarity=0.209 Sum_probs=267.0
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.++++||+||+|||||+ +++.++|+||++||||||++||||.|++++.+.+..+++++.... .......+
T Consensus 9 G~~v~PG~ID~H~H~~~pg~~~~e~~~t~t~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 84 (374)
T cd01317 9 GKILAPGLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVG----IVRVLPIG 84 (374)
T ss_pred CCEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCC----CCCEEEEE
T ss_conf 99991486854503599997651449999999983995899978899999897999999999703458----83047899
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC----------
Q ss_conf 5278999889987440687210221045510025654100688999999998739822202575555543----------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID---------- 145 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~---------- 145 (349)
.++....++.+.++......+.+ .++.......+...++++|++++..+.++++|||+..+...
T Consensus 85 ~~~~~~~~~~l~~~~~l~~~G~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~~~~~~ 158 (374)
T cd01317 85 ALTKGLKGEELTEIGELLEAGAV------GFSDDGKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGVMNEGKVAS 158 (374)
T ss_pred EEECCCCHHHHHHHHHHHHCCCE------EEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCHH
T ss_conf 84548633255657889860854------673499634579999999998875498599937986786546650586315
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf -----0014676545789999962069539970578589999987057----3320230231003978861378883113
Q gi|254781012|r 146 -----IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYY 216 (349)
Q Consensus 146 -----~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k 216 (349)
...++++..+..+.+.+++.+++++||+|+|+++++++|++++ +||+|||||||+|+++++.. +++.+|
T Consensus 159 ~~~~~~~p~~~E~~ai~~~~~la~~~g~~vhi~Hiss~~~l~li~~ar~~G~~vt~e~~p~~L~~~~~~~~~--~~~~~k 236 (374)
T cd01317 159 RLGLPGIPPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALES--YDTNAK 236 (374)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECHHHHCCCHHHHHC--CCCCCC
T ss_conf 208999999999999999999999729848973435588999999998748977999725653588878606--676524
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHHH-HH-CCCCHHHHHHHHH
Q ss_conf 2134699999999999997699418971388865313321545--775445436799999999-72-0699999999982
Q gi|254781012|r 217 CLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQI-FE-EENKLENLESFVS 292 (349)
Q Consensus 217 ~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~~-~~-~~~~L~~l~~~~s 292 (349)
||||||+++||++||+++++|.| |+|+|||+||+.++|..++ +++|+.+.++.+|++... .+ +.++|++++++||
T Consensus 237 ~~PPlr~~~d~~~L~~~l~~g~i-d~i~sDH~p~~~~~k~~~~~~a~~G~~g~e~~lp~l~~~~v~~~~lsle~~v~~~s 315 (374)
T cd01317 237 VNPPLRSEEDREALIEALKDGTI-DAIASDHAPHTDEEKDLPFAEAPPGIIGLETALPLLWTLLVKGGLLTLPDLIRALS 315 (374)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 68987855679999999973993-49996898888777457765477678650046999999999859999999999997
Q ss_pred HCCHHHCCCCC------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 43178818898------885289994797178471122677771465797698338887
Q gi|254781012|r 293 INGATWYGIPV------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 293 ~npa~~~gl~~------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
.||||+|||++ ..+||+|+||+++|+|+.+.++|+++||||+ |++++|+|+.
T Consensus 316 ~nPAk~lgl~~G~i~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~e-G~~~~G~v~~ 373 (374)
T cd01317 316 TNPAKILGLPPGRLEVGAPADLVLFDPDAEWIVDEETFRSKSKNTPFD-GQKLKGRVLA 373 (374)
T ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 999999699968647998478899959998898835571758867845-9888789967
No 23
>PRK01211 dihydroorotase; Provisional
Probab=100.00 E-value=0 Score=495.15 Aligned_cols=311 Identities=17% Similarity=0.150 Sum_probs=232.8
Q ss_pred EEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 5586466423750881------7889874987418873999838951489898999999999998386884699501345
Q gi|254781012|r 3 KISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIY 76 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~ 76 (349)
..+|||+||+|||||| ||+.|||+||++||||||++||||.||+++.+.+.++++++... ..+++.++..
T Consensus 44 g~VlPG~ID~HvH~rePG~~~kEd~~tgs~AAa~GGvTtv~~mPnt~ppi~~~~~~~~~~~~~~~~----~~~d~~~~~~ 119 (413)
T PRK01211 44 GAVLPAATDIHVHFRTPGETYKEDFSTGSLSAIFGGTTTVMDMPNNKIPIDDYNAFSDKLGIISRT----SYCDFGLYSM 119 (413)
T ss_pred CEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCC----CEEEEEEEEE
T ss_conf 869398779960269999430320999999998299189998899999967799999999974047----5467887871
Q ss_pred ECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC----------
Q ss_conf 2789998899874406872102210455100256541006889999999987398222025755555430----------
Q gi|254781012|r 77 LTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDI---------- 146 (349)
Q Consensus 77 lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~---------- 146 (349)
.+..+ ..+.+. ...++|.|+++++... .+.......++++++.+.++++|||+.......
T Consensus 120 ~~~~~--~~~~~~----~~~g~k~f~~~~~~~~----~~~~i~~~~~~~~~~~~~~v~~HaEd~~~~~~~~~~~~~~~~~ 189 (413)
T PRK01211 120 ETGDN--SLIIDK----RSIGLKVYLGGSTNTN----GTDVITNEEISKINELNVPVFFHGEDEECLKKHQFEAKNLREH 189 (413)
T ss_pred ECCCC--HHHHHH----HHCCEEEEECCCCCCC----CCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCHHHC
T ss_conf 23742--554431----3103144105655556----4045459999999867992898535878876433045686563
Q ss_pred ---HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCC
Q ss_conf ---01467654578999996206953997057858999998705733202302310039788613788831132134699
Q gi|254781012|r 147 ---FDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKR 223 (349)
Q Consensus 147 ---~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~ 223 (349)
+..+++.....+...++..++ +++|+|+.+.+. ++++|||||||+|+++. .+++++|||||||+
T Consensus 190 ~~~rp~~~e~~av~~~~~~~~~~~---~~~h~ss~e~~~------~i~~Et~pHhL~l~de~----~~g~~~k~nPPLRs 256 (413)
T PRK01211 190 NLSRPIECEILAAEYVKNLDLKTK---IMAHVSSPDVIG------EFLREVTPHHLLLNDEM----PLGSYGKVNPPLRD 256 (413)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCC---EEEEEECHHHHH------HHHHEECCEEEECCCCC----CCCCCCEECCCCCC
T ss_conf 155759999999999998764338---799994688987------78742045048715520----16876166899989
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCC--CCCCCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHCCHHHCC
Q ss_conf 999999999997699418971388865313321545--77544543679999999-972069999999998243178818
Q gi|254781012|r 224 EKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSC--GCAGIYTARNALNCLAQ-IFEEENKLENLESFVSINGATWYG 300 (349)
Q Consensus 224 ~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~--~~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~~~s~npa~~~g 300 (349)
++||+|||+||+||+| |+|+||||||+.+||. +| +++|+.|+++.+|+++. +.++.++|++++++||.||||+||
T Consensus 257 ~~d~~aL~~al~dG~I-D~IaSDHaPh~~~eK~-~f~~a~~G~~GlEt~lpl~l~~v~~g~l~l~~lv~~~s~nPAki~g 334 (413)
T PRK01211 257 RSTQSRLLNSYISGNF-DILSSDHAPHTENDKT-EFEYAKSGIIGVETRIPLMLALVSKKILPLDVLYKTAIENPPSIFG 334 (413)
T ss_pred HHHHHHHHHHHHCCCC-CEEEECCCCCCHHHCC-CHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 7999999998743998-8896378898946618-8645888987614389999999874897999999999999999959
Q ss_pred CCC------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEE
Q ss_conf 898------8852899947971784711226777714657976983388
Q gi|254781012|r 301 IPV------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEV 343 (349)
Q Consensus 301 l~~------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V 343 (349)
|+. ..|||+|+|++++|+|+.+.++||++||||+ |+++.|+|
T Consensus 335 l~kG~i~~G~dADlvI~D~~~~~~v~~~~~~Sk~~~tPfe-G~~~~~p~ 382 (413)
T PRK01211 335 IRKGKIENGYDADFMSFDFTNIKRLNDYRLHSKNPVSPFN-GMDAIFPS 382 (413)
T ss_pred CCCCCCCCCCCCCEEEECCCCCEEECHHHCCCCCCCCCCC-CEEEEEEE
T ss_conf 9876507999877899849998898868841417997728-92871249
No 24
>PRK08323 dihydropyrimidinase; Validated
Probab=100.00 E-value=0 Score=475.09 Aligned_cols=333 Identities=13% Similarity=0.096 Sum_probs=258.2
Q ss_pred EEEECCCCEEEEECCC--------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 5586466423750881--------78898749874188739998389514898989999999999983868846995013
Q gi|254781012|r 3 KISLRVPDDWHLHLRD--------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMT 74 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re--------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~ 74 (349)
.+++||+||+|||+|+ +++.++|+||++||||||++|||+.|.....+.+..++++... +..+++.+.
T Consensus 48 ~~V~PG~ID~H~H~~~p~~g~~~~ed~~tgt~aA~~GGvTtv~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~~~ 123 (463)
T PRK08323 48 CYVMPGGIDPHTHMEMPFGGTVAADDFETGTRAAAAGGTTTIIDFALPPKGQSLREALEAWHGKAAG----KAVIDYSFH 123 (463)
T ss_pred CEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCC----CCEEEEEEE
T ss_conf 9995488974447688889960543188899999739828984357899998859999999997416----856766336
Q ss_pred EEECCCCC--HHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCC--------
Q ss_conf 45278999--88998744068721022104551002565410068899999999873982220257555554--------
Q gi|254781012|r 75 IYLTETTD--PDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDI-------- 144 (349)
Q Consensus 75 ~~lt~~~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~-------- 144 (349)
+.++.... ..++........+.++|.|+.. .+....+...+.++|+++++++.++++|||+.....
T Consensus 124 ~~~~~~~~~~l~e~~~~~~~~G~~~fk~~~~~----~~~~~~~d~~l~~~~~~a~~~g~~~~~H~E~~~~i~~l~~~~~~ 199 (463)
T PRK08323 124 MAITDWNEAVLDEMLELVVEEGITSFKHFMAY----KGALMLDDDELLRSLQRAAELGALPMVHAENGDAIAELQAKLLA 199 (463)
T ss_pred EEECCCCHHHHHHHHHHHHHCCCCCEEEEECC----CCCEEECHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 77626877689999999985795501023026----89602176899999999986499799947774799999999997
Q ss_pred ----------CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCC
Q ss_conf ----------30014676545789999962069539970578589999987057----3320230231003978861378
Q gi|254781012|r 145 ----------DIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDG 210 (349)
Q Consensus 145 ----------~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~ 210 (349)
..+..+++..+..+++.+++.+++++||+|+||++++++|++++ +||||||||||+|+++++...+
T Consensus 200 ~G~~~~~~~~~~rp~~~E~~av~r~i~la~~~g~~~hi~Hvss~~~~~~I~~ak~~G~~Vt~e~~ph~L~l~~~~~~~~~ 279 (463)
T PRK08323 200 AGKTGPEYHALSRPPEVEGEATNRAIMIAELAGVPLYIVHVSCKEALEAIRRARARGQRVFGETCPQYLLLDESEYRGPD 279 (463)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHHCCCHHHHCCCC
T ss_conf 58966244645488899999999999999996995342104727789999999876998426622002118999970898
Q ss_pred C--CCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHC----CC--CCCCCCCHHHHHHHHHH--HHHC
Q ss_conf 8--8311321346999999999999976994189713888653133215----45--77544543679999999--9720
Q gi|254781012|r 211 L--NPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKES----SC--GCAGIYTARNALNCLAQ--IFEE 280 (349)
Q Consensus 211 ~--~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~----~~--~~~g~~~~~~~~~~~~~--~~~~ 280 (349)
. +..++||||||+++||++||+++.+|+| |+|+||||||+.++|+. +| .+.|+.+.++.++++.. +..+
T Consensus 280 ~~~~~~~~~~PPlR~~~d~~aL~~~l~~G~i-d~i~sDH~P~~~~~~~~~~~~~f~~~p~G~~g~e~~l~~l~~~~V~~g 358 (463)
T PRK08323 280 WDEGAKYVMSPPLRDKEHQDALWRGLQSGSL-QVVATDHCPFCFAEQKQLGRGDFSKIPNGTPGVEDRMPLLFSEGVMTG 358 (463)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 5446417876876887899999988752980-099758776671443322678976787998504677999999999839
Q ss_pred CCCHHHHHHHHHHCCHHHCCCCCC--------CCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 699999999982431788188988--------85289994797178471122677771465797698338887
Q gi|254781012|r 281 ENKLENLESFVSINGATWYGIPVN--------TRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 281 ~~~L~~l~~~~s~npa~~~gl~~~--------~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
.++|++++++||.||||+|||.++ .|||+|+||+++|+|+.+.++||++||||+ |++++|+|+.
T Consensus 359 ~lsl~~~v~~~s~nPA~~lGL~~~KG~i~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~~-G~~~~G~v~~ 430 (463)
T PRK08323 359 RITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISAKTLHSNVDYNPFE-GFEVTGWPVH 430 (463)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 99999999998662999839788886646898541899939986898835463558878878-9788768999
No 25
>PRK09357 pyrC dihydroorotase; Validated
Probab=100.00 E-value=0 Score=468.56 Aligned_cols=328 Identities=20% Similarity=0.176 Sum_probs=265.1
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 65586466423750881------788987498741887399983895148989899999999999838688469950134
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.++++||+||.|||||+ +++.++++||++||||||++||||.|++++.+.++...++..+.. ..++.+.+
T Consensus 50 G~~V~PGfID~H~H~~~pg~~~~~~~~~g~~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 125 (425)
T PRK09357 50 GLVVAPGLVDLHVHLREPGQEYKETIETGTRAAAAGGFTTVVAMPNTNPVIDTPEVVEYVLDLAKEAG----VVDVLPVG 125 (425)
T ss_pred CCEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC----CCEEEEEE
T ss_conf 99992498977716788997630036676899985780589616898777785999999998642048----51146752
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECC--CCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC-------
Q ss_conf 5278999889987440687210221045510025--6541006889999999987398222025755555430-------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNS--HHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDI------- 146 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~--~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~------- 146 (349)
.++.+..++.+.++...... +...++ ..++.+...++++++++++.+.++++|||+..+....
T Consensus 126 ~~t~~~~~~~l~~~~~l~~~--------g~~~~s~~~~~~~~~~~l~~~~~~a~~~~~~~~~h~e~~~l~~~~~~~~g~~ 197 (425)
T PRK09357 126 AITKGLAGEELTEFGALAEA--------GVVAFSDDGIPVQDARLMRRALEYAKKLDLLIAQHCEDPSLTEGGVMNEGIV 197 (425)
T ss_pred CCCCCCCHHHHHHHHHHHHC--------CEEEEECCCCEECCHHHHHHHHHHHHHCCCEEEECCCCHHHHHCHHHCCCCC
T ss_conf 13577650456777765425--------7479813992304589999999888645956997425233442202246863
Q ss_pred --------HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHC----CCCCEEEECCCCCCCHHHHHCCCCCCC
Q ss_conf --------01467654578999996206953997057858999998705----733202302310039788613788831
Q gi|254781012|r 147 --------FDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNA----TNIAGSITVHHLIINRNAIFHDGLNPH 214 (349)
Q Consensus 147 --------~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~a----k~vtaEVTPHHL~lt~~d~~~~~~~~~ 214 (349)
....++.....+++.+++.+++++||+|+||++++++|+++ .+||||||||||+|+++++.. +++.
T Consensus 198 ~~~~~~~~~p~~~E~~~i~r~~~la~~~g~~~hi~H~ss~~~le~i~~ak~~G~~vt~e~~p~~l~~t~~~~~~--~~~~ 275 (425)
T PRK09357 198 AARLGLPGIPEVAEEVAIARDVLLAEETGARYHICHVSTAGSVELIRFAKALGIKVTAEVTPHHLLLTDEDLLT--YDGN 275 (425)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECHHHHHCCHHHHHC--CCCC
T ss_conf 12038999976788989999999887619926875146165899999999838975234145565289857623--6863
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCC--CCCCCCHHHHHHHHHHH--HHCCCCHHHHHHH
Q ss_conf 1321346999999999999976994189713888653133215457--75445436799999999--7206999999999
Q gi|254781012|r 215 YYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCG--CAGIYTARNALNCLAQI--FEEENKLENLESF 290 (349)
Q Consensus 215 ~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~--~~g~~~~~~~~~~~~~~--~~~~~~L~~l~~~ 290 (349)
+|||||||+++||++||+++++|.| ++|+||||||+.++|..+|. ++|+.+.++.+|.++.. ..+.++|++++++
T Consensus 276 ~k~~PpLr~~~~~~~l~~~l~~g~i-~~i~tDh~P~~~~~k~~~~~~~~~G~~g~e~~~~~~~~~~v~~~~lsle~~v~~ 354 (425)
T PRK09357 276 YKVNPPLRSKEDREALIEALKDGTI-DAIATDHAPHAEEEKECEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEK 354 (425)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCE-EEEEECCCCCCHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 2207986525569999999966988-999968888886773445000778987477689999999987599999999999
Q ss_pred HHHCCHHHCCCCC------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 8243178818898------885289994797178471122677771465797698338887
Q gi|254781012|r 291 VSINGATWYGIPV------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 291 ~s~npa~~~gl~~------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
||.||||+|||+. ..|||+|+||+++|+|+.+.+.|+++||||+ |++++|+|..
T Consensus 355 ~T~nPAk~lGl~~G~i~~G~dADivi~Dp~~~~~v~~~~~~s~~~~sp~~-g~~~~g~v~~ 414 (425)
T PRK09357 355 LSINPARILGLPAGPLAEGEPADLVIFDPEAEWTVDGEDFASKGKNTPFI-GMKLKGKVVY 414 (425)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 97999999599877648999466899939997898756661768978815-9788889999
No 26
>PRK06189 allantoinase; Provisional
Probab=100.00 E-value=0 Score=449.19 Aligned_cols=332 Identities=14% Similarity=0.132 Sum_probs=263.3
Q ss_pred EEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 5586466423750881------7889874987418873999838-95148989899999999999838688469950134
Q gi|254781012|r 3 KISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMP-NIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MP-NT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.+++||+||+|||||+ +++.+++++|++||+||+++|| |+.||+.+.+.+..+.+...+ ...+++.+.+
T Consensus 50 ~~V~PG~ID~H~H~~~pg~~~~e~~~tg~~aa~~GGvTt~~~~p~~~~p~~~~~~~~~~~~~~~~~----~~~~d~~~~~ 125 (433)
T PRK06189 50 LHVFPGAVDCHVHFNEPGRTEWEGFETGSQALAAGGCTTYFDMPLNSIPPTLTREELEAKAQLAEE----KSLVDFALWG 125 (433)
T ss_pred CEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHC----CCCCCEEEEE
T ss_conf 999668897142779998432020777899998088078613656789984479999999997550----1763224574
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC----------
Q ss_conf 5278999889987440687210221045510025654100688999999998739822202575555543----------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID---------- 145 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~---------- 145 (349)
++++.+ .+.+..+...+ ..+++.|...... ++....+...+.+.+++++.+|.++.+|||+......
T Consensus 126 ~~~~~~-~~~l~~l~~~g-~~g~k~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~v~~h~e~~~~~~~l~~~~~~~g~ 202 (433)
T PRK06189 126 GLVPGN-IDHLRDLAEAG-AIGFKAFMSHSGT-DEFQSADDRTLLKGMKEIAALGLILALHAESDAITRALTTIAREEGK 202 (433)
T ss_pred CCCCCH-HHHHHHHHHCC-CEEEEEEEECCCC-CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 143324-55545545337-5389998621457-75556898999999999985599899947987999999999997489
Q ss_pred --------CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCC
Q ss_conf --------0014676545789999962069539970578589999987057----3320230231003978861378883
Q gi|254781012|r 146 --------IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNP 213 (349)
Q Consensus 146 --------~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~ 213 (349)
.+..+++.....+.+.+++.+++++||+|+||++++++|++++ +||+|+|||||+|+.+++.. +++
T Consensus 203 ~~~~~~~~~rp~~ae~~av~~~~~la~~~g~~lhi~h~st~~~~~~i~~ak~~G~~vt~e~~p~~l~~~~~~~~~--~~~ 280 (433)
T PRK06189 203 LGVRDYLESRPEVAELEAVQRALLFAQLTGCPLHLVHVSTGKAVKLIKEAKQEGVDVSVETCPHYLLFSGEDFER--IGA 280 (433)
T ss_pred CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEECHHHHHCCHHHHHH--CCC
T ss_conf 775554475887899999999999999749747841136377889999999749976236631025168878861--696
Q ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCC-C--CCCCCCCHHHHHHHHHH-HHHCCCCHHHHHH
Q ss_conf 113213469999999999999769941897138886531332154-5--77544543679999999-9720699999999
Q gi|254781012|r 214 HYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESS-C--GCAGIYTARNALNCLAQ-IFEEENKLENLES 289 (349)
Q Consensus 214 ~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~-~--~~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~ 289 (349)
.+||+||||+++||++||+++++|.| |+|+|||+||..++|... + ...|+.+.++.+++++. +.++.++|+++++
T Consensus 281 ~~k~~PpLr~~~~~~~L~~~l~~g~i-d~i~sDh~p~~~~~k~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~l~l~~~v~ 359 (433)
T PRK06189 281 VAKCAPPLRDRQEVEELWDGLMAGHI-DTVSSDHSPSLPDLKTEDDFFEVWGGISGGQSTLLVMLTEGHERGLPLEQIAR 359 (433)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCCHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 23877888997899999987616964-69973899999778447775542477763566899999999866999999999
Q ss_pred HHHHCCHHHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 98243178818898-------885289994797178471122677771465797698338887
Q gi|254781012|r 290 FVSINGATWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 290 ~~s~npa~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
+||.||||+|||+. ..+||+|+||+++|+|+.+.++||++||||+ |++++|+|+.
T Consensus 360 ~~s~nPA~~~gL~~kG~i~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~~-G~~~~G~v~~ 421 (433)
T PRK06189 360 LLATAPAKRFGLPQKGRLEVGADADFVLVDLNEPYTLTAEDLYYRHKQSPYE-GQTFRGRVKA 421 (433)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 9978899982989888727999663899949998898746664668867857-9888789999
No 27
>TIGR03178 allantoinase allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases.
Probab=100.00 E-value=0 Score=431.35 Aligned_cols=332 Identities=14% Similarity=0.127 Sum_probs=260.9
Q ss_pred EEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 5586466423750881------7889874987418873999838-95148989899999999999838688469950134
Q gi|254781012|r 3 KISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMP-NIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI 75 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MP-NT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~ 75 (349)
.+++||+||+|||+|+ +++.+++++|++||+||+++|| |+.|++++.+.+..+.+... ....+++.+++
T Consensus 47 ~~V~PGfID~H~H~~~pg~~~~e~~~t~~~aa~~gGvTtv~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~vd~~~~~ 122 (442)
T TIGR03178 47 LVVFPGVVDTHVHINEPGRTEWEGFETGTRAAAAGGITTFIDMPLNSIPPTTTREALEAKAEAAK----GKLAVDVGFWG 122 (442)
T ss_pred CEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHC----CCCEEEEEEEC
T ss_conf 98957999856588999854314266778999659988999687789888653689999999722----56503343441
Q ss_pred EECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC----------
Q ss_conf 5278999889987440687210221045510025654100688999999998739822202575555543----------
Q gi|254781012|r 76 YLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID---------- 145 (349)
Q Consensus 76 ~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~---------- 145 (349)
.+++.+ .+.+......+ +.++|.|+..+. ..+....+...+.++++++++.+.++++|||++.....
T Consensus 123 ~~~~~~-~~~l~~l~~~g-~~~~k~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~g~~~~~h~e~~~~~~~~~~~~~~~~~ 199 (442)
T TIGR03178 123 GLVPGN-LDDLRALAEAG-VVGFKAFLSPSG-VDEFPHVDDRTLYKGMREIARAGKLLAVHAESPAITSALGEEAPPQGG 199 (442)
T ss_pred CCCCCH-HHHHHHHHHCC-CEEEEEEEECCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 445313-66665534337-617889961256-776556799999999999986698699955898999999999986289
Q ss_pred --------CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCCC
Q ss_conf --------0014676545789999962069539970578589999987057----3320230231003978861378883
Q gi|254781012|r 146 --------IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNP 213 (349)
Q Consensus 146 --------~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~ 213 (349)
....+++.....+.+.+++.+++++|++|+|+++++++|++++ +||+|+|||||+|+.+++.. +++
T Consensus 200 ~~~~~~~~~rp~~~e~~av~~~~~~a~~~g~~~hi~Hiss~~~l~~i~~ak~~G~~vt~e~~p~~l~l~~~~~~~--~~~ 277 (442)
T TIGR03178 200 VSARAYLASRPVAAEVEAVARTLAFAKDTGCRVHVVHISSAEAVALIREAKQEGLDVTVETCPHYLTFTAEEVPD--GGT 277 (442)
T ss_pred CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHCHHHHHC--CCC
T ss_conf 656661366888999999999999999729945412247488999999999859926899664255304676605--783
Q ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCC-C--CCCCCCCHHHHHHHHHHH-HHCCCCHHHHHH
Q ss_conf 113213469999999999999769941897138886531332154-5--775445436799999999-720699999999
Q gi|254781012|r 214 HYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESS-C--GCAGIYTARNALNCLAQI-FEEENKLENLES 289 (349)
Q Consensus 214 ~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~-~--~~~g~~~~~~~~~~~~~~-~~~~~~L~~l~~ 289 (349)
.+||+||||++++|++||+++.+|++ |+|+|||+||+.+.|+.. + ...|+.+.++.++++... ..+.++|+++++
T Consensus 278 ~~k~~pplr~~~~~~~l~~~l~~g~i-d~i~sDh~p~~~~~k~~~~~~~~~~g~~g~e~~l~~~~~~~~~~glsl~~av~ 356 (442)
T TIGR03178 278 VFKCAPPIRDRQNQERLWEALLAGDI-DFVVSDHSPCTPDLKRSGDFFKAWGGISGLQFTLPVMWDEARQRGLPLEDIAR 356 (442)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCE-EEEEECCCCCCHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 35318533678889999987626954-89983899999789445765454578751888999999999856877999999
Q ss_pred HHHHCCHHHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 98243178818898-------885289994797178471122677771465797698338887
Q gi|254781012|r 290 FVSINGATWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 290 ~~s~npa~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
+||.||||+|||+. ..+||+|+||+++|+|+.+.++||++||||+ |++++|+|..
T Consensus 357 ~~s~nPA~~lGL~~kG~l~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~~-g~~~~g~v~~ 418 (442)
T TIGR03178 357 LMATNPAKRFGLAQKGRIAPGKDADFVFVDDDESYTLTKDMLYHRHKISPYE-GRTIGGRVRA 418 (442)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 9978799985989888768898455899939998898857770668857768-9789889999
No 28
>TIGR02033 D-hydantoinase dihydropyrimidinase; InterPro: IPR011778 This entry represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme ..
Probab=100.00 E-value=0 Score=424.05 Aligned_cols=333 Identities=15% Similarity=0.153 Sum_probs=270.0
Q ss_pred EEEECCCCEEEEECCC----------HHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 5586466423750881----------78898749874188739998-389514898989999999999983868846995
Q gi|254781012|r 3 KISLRVPDDWHLHLRD----------GEILKTVLRDTAKNFRRALV-MPNIDPPIITVDDACAYRQRILNALPPEYDFSP 71 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re----------g~~~~~t~aa~aGG~TtV~~-MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~ 71 (349)
+++|||+||.|+||-- .||.|||+||++||-|||+| |--..+=-.=.+.++.|++.+ ..++-+++
T Consensus 50 kyVlPGGiD~HTHl~~~~~gG~~~t~DdF~~Gt~AAa~GGTTtiIDhf~~~~~G~~L~~~~e~y~~~A----~gKsviDY 125 (466)
T TIGR02033 50 KYVLPGGIDVHTHLEMPFGGGSTVTADDFFSGTKAAAAGGTTTIIDHFALPEKGKSLTEALETYHEKA----EGKSVIDY 125 (466)
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHH----CCCCEEEH
T ss_conf 28689874621000100368536540460058899841898516476042888872088999999983----68866742
Q ss_pred EEEEEECCCCCH--HHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCC--------
Q ss_conf 013452789998--8998744068721022104551002565410068899999999873982220257555--------
Q gi|254781012|r 72 LMTIYLTETTDP--DDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILN-------- 141 (349)
Q Consensus 72 ~~~~~lt~~~~~--~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~-------- 141 (349)
.++..++.-++. +++........+..+|+||++- +....+++.++++|..+++.|-.+++|||+-+
T Consensus 126 ~FHm~i~~~~d~v~~e~~~~~~~~Gi~SfK~fMAY~----~~l~~~D~~L~~~L~~~~~~GA~~~VHAENgd~ia~~~~~ 201 (466)
T TIGR02033 126 GFHMVITDWNDEVLEEHESELVEEGISSFKVFMAYK----NLLMVDDEELFEILKRLKELGALLQVHAENGDVIAELQAR 201 (466)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHC----HHHCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 246777632767899999999862540102554614----2211575789999999875198178604630589999999
Q ss_pred ----------CCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHH
Q ss_conf ----------55430014676545789999962069-539970578589999987057----332023023100397886
Q gi|254781012|r 142 ----------QDIDIFDRELMFIDKILDPLRNKLPN-LKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAI 206 (349)
Q Consensus 142 ----------~~~~~~~~E~~~~~~~l~~~~a~~~~-~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~ 206 (349)
.+.-.+-+|.|..+..|.+.+++..+ +++.|.||||+++++.|++|+ +|++|+|||||+|++..|
T Consensus 202 ~~a~G~T~P~yHalSRP~e~EaEA~~R~I~~A~~a~n~PLy~vHvS~~~a~~~i~~AR~~G~~V~~ETcp~YL~Ld~~~y 281 (466)
T TIGR02033 202 LLAQGKTGPEYHALSRPPELEAEAVARAIKLAALADNAPLYIVHVSTKDALDEIAEAREKGQPVYGETCPQYLLLDDTLY 281 (466)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHH
T ss_conf 99647878887533473332577999999999996598658999637778999999985399089986067211346781
Q ss_pred H-CCCC-CCCEEECCCCC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH---H-CC---C--CCCCCCCHHHHHHHH
Q ss_conf 1-3788-83113213469-999999999999769941897138886531332---1-54---5--775445436799999
Q gi|254781012|r 207 F-HDGL-NPHYYCLPIPK-REKHRLSLRKAALSGNPRFFLGTDSAPHWDSSK---E-SS---C--GCAGIYTARNALNCL 274 (349)
Q Consensus 207 ~-~~~~-~~~~k~nPPlR-~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK---~-~~---~--~~~g~~~~~~~~~~~ 274 (349)
. .... +..|-|+|||| +++||++||+||++|.+ +.|||||||+..++| + .+ | .+-|.+|.|.=++++
T Consensus 282 d~~p~~~~AKyv~SPPLRP~~~~qd~Lw~~l~~G~L-q~v~sDHC~F~~~~~Gkl~~~G~dDF~~iPNG~PGvE~Rm~~l 360 (466)
T TIGR02033 282 DDKPGFEAAKYVLSPPLRPEKEDQDALWQALSSGAL-QTVSSDHCTFNFAQKGKLKAIGKDDFRKIPNGLPGVEERMELL 360 (466)
T ss_pred CCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCCC-CEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 587772655012180013387660899998761851-1033033663543561411288876450788458621114798
Q ss_pred HH--HHHCCCCHHHHHHHHHHCCHHHCCCCCCC--------CEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEE
Q ss_conf 99--97206999999999824317881889888--------528999479717847112267777146579769833888
Q gi|254781012|r 275 AQ--IFEEENKLENLESFVSINGATWYGIPVNT--------RKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVM 344 (349)
Q Consensus 275 ~~--~~~~~~~L~~l~~~~s~npa~~~gl~~~~--------~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~ 344 (349)
.. |-.++++++|+|+++|+||||+|||+|+| +||+|+||+...+|-.++.+++...|||+ |++++|.|.
T Consensus 361 f~~gV~~Gri~~e~FV~~TSt~~AK~F~lyP~KG~i~~GSDADivi~DP~~~~~I~~~~~h~~~dY~pfE-G~~~~G~~~ 439 (466)
T TIGR02033 361 FDEGVAKGRITLEKFVELTSTNPAKIFNLYPRKGTIAVGSDADIVIWDPRRSTVISAETHHDNADYTPFE-GFKVKGAVV 439 (466)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEECCCCCEEHHHHHHHHHCCCCCCC-CEEECCEEE
T ss_conf 8733265878766798998886688718898675450246735689889964530236665314886025-705502079
Q ss_pred E
Q ss_conf 7
Q gi|254781012|r 345 L 345 (349)
Q Consensus 345 ~ 345 (349)
+
T Consensus 440 ~ 440 (466)
T TIGR02033 440 S 440 (466)
T ss_pred E
T ss_conf 9
No 29
>KOG2902 consensus
Probab=100.00 E-value=0 Score=421.07 Aligned_cols=334 Identities=41% Similarity=0.776 Sum_probs=306.8
Q ss_pred CEEEECCCCEEEEECCCHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC
Q ss_conf 655864664237508817889874987-4188739998389514898989999999999983868846995013452789
Q gi|254781012|r 2 KKISLRVPDDWHLHLRDGEILKTVLRD-TAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTET 80 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Reg~~~~~t~aa-~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~ 80 (349)
-+|.|++++|+|||+|||+++...... +.|||....+|||.+|||+|.+....|++.+.+ ...+..| .++.||++.
T Consensus 3 mel~i~~~~DmHvHlR~g~ml~aVvP~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~k-L~skttf--LMslYLs~~ 79 (344)
T KOG2902 3 MELTITQPDDMHVHLRDGDMLHAVVPHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIMK-LPSKTTF--LMSLYLSDK 79 (344)
T ss_pred EEEECCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH-CCCCCEE--EEEEEECCC
T ss_conf 6874388651468862687024425411469646899747888983128999999999985-6865616--788861688
Q ss_pred CCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCH-HHHHHHHHHHHHHCCCCEECCCCCCC-CCCCCHHHHHHHHHHHH
Q ss_conf 99889987440687210221045510025654100-68899999999873982220257555-55430014676545789
Q gi|254781012|r 81 TDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRN-IDRVMPVLERMETIGMPLCIHGEILN-QDIDIFDRELMFIDKIL 158 (349)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~-~~~~~~~le~~~~~~~~i~~H~E~~~-~~~~~~~~E~~~~~~~l 158 (349)
..++++-++.+.+.+.++|+|++|+|+++..|+.+ ....+++|+.|++.++++.+|+|.+. .+....++|..++++.+
T Consensus 80 ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D~~Vf~aE~~Flptll 159 (344)
T KOG2902 80 TTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSIDGHVFDAEKIFLPTLL 159 (344)
T ss_pred CCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEECCHHHHHHHHH
T ss_conf 88899999987474546874047664453236654202341899999871964774277898667741040166689999
Q ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHHCC--CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 999962069539970578589999987057--332023023100397886137888311321346999999999999976
Q gi|254781012|r 159 DPLRNKLPNLKIILEHITTSNGIDYVNNAT--NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALS 236 (349)
Q Consensus 159 ~~~~a~~~~~~iHi~HiST~~sv~lir~ak--~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~ 236 (349)
. +..+++++++.+.|++|..+|+.|+.++ .|.+.+|+|||+||.+|+.+ +|+-+|.|-.+.+.||+||++|..+
T Consensus 160 ~-LhqrfP~LKivlEHcTt~dAv~~ve~a~~~sVaaTvTahHL~Lt~~dwqg---~P~nfCkPVaK~e~dr~AlvkAatS 235 (344)
T KOG2902 160 Q-LHQRFPQLKIVLEHCTTMDAVNFVESAKEGSVAATVTAHHLLLTRNDWQG---QPHNFCKPVAKREIDREALVKAATS 235 (344)
T ss_pred H-HHHHCCCCEEHHHHCCCHHHHHHHHHHCCCCEEEEEEHHEEEEEHHHHCC---CCCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 9-98757630247875261889999986237731357420206884254368---9740010000373218999998744
Q ss_pred CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC--CCCCEEEEEECC
Q ss_conf 994189713888653133215457754454367999999997206999999999824317881889--888528999479
Q gi|254781012|r 237 GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIP--VNTRKISLKRRE 314 (349)
Q Consensus 237 G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~--~~~~~i~l~d~~ 314 (349)
|...+|+|||.|||++..|+..++|+|+++++++++++++||++.+.|++|-.|.|.++.++|||| .+..+|++.+
T Consensus 236 g~pkFFfGsDSAPHprs~K~~~~~cAGvysqpfA~sy~A~VFde~gaLd~Lk~F~s~fG~~FY~~p~e~~sS~I~lKK-- 313 (344)
T KOG2902 236 GSPKFFFGSDSAPHPRSRKESSCGCAGVYSQPFALSYYAKVFDEAGALDKLKAFTSFFGPDFYGLPDERNSSKITLKK-- 313 (344)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCCCCCCCCEEEEC--
T ss_conf 997166368999984222346887433453610689999997650427777666765286300264103425436642--
Q ss_pred CCEEECHHHCCCCCCEEECCCCEEECCEEE
Q ss_conf 717847112267777146579769833888
Q gi|254781012|r 315 QPIIFDEKITTSTGSITIFNPIFPLYWEVM 344 (349)
Q Consensus 315 ~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~ 344 (349)
++|.|++..-..++.+.||.+|++|+|.+.
T Consensus 314 e~~~vP~v~~~~~~~ivPf~age~LqW~~~ 343 (344)
T KOG2902 314 EPWKVPDVFNFPFGEIVPFFAGETLQWQPL 343 (344)
T ss_pred CCCCCCCHHCCCCCCEEEECCCCEEEEEEC
T ss_conf 764675121378775433068983531047
No 30
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=100.00 E-value=0 Score=409.19 Aligned_cols=333 Identities=15% Similarity=0.118 Sum_probs=258.0
Q ss_pred CEEEECCCCEEEEECCC------HHHHHHHHHHHCCCCEEEEECC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 65586466423750881------7889874987418873999838-9514898989999999999983868846995013
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------GEILKTVLRDTAKNFRRALVMP-NIDPPIITVDDACAYRQRILNALPPEYDFSPLMT 74 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------g~~~~~t~aa~aGG~TtV~~MP-NT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~ 74 (349)
.++++||+||+|+|+++ +++.+++.+|++|||||+++|| |+.|++.+.+.+..+.+.... ...+.+.++
T Consensus 47 G~~V~PGfID~H~H~~~pg~~~~e~~~~~~~aa~~gGvTtv~~~p~~~~p~~~~~~~~~~~~~~~~~----~~~~d~~~~ 122 (447)
T cd01315 47 GLVVMPGLIDTHVHINEPGRTEWEGFETGTKAAAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQG----KLHVDVGFW 122 (447)
T ss_pred CCEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHC----CCCCCEEEE
T ss_conf 9999038687775889887442040666799998389338996767889875649999999998642----466210145
Q ss_pred EEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC--------
Q ss_conf 452789998899874406872102210455100256541006889999999987398222025755555430--------
Q gi|254781012|r 75 IYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDI-------- 146 (349)
Q Consensus 75 ~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~-------- 146 (349)
+.+++.+ ...+..+...+ +.++|.|...+. ..+....+...+.++|+++++.+.++.+|||++......
T Consensus 123 ~~~~~~~-~~~l~~~~~~g-~~g~k~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~~~~~~~~~~ 199 (447)
T cd01315 123 GGLVPGN-LDQLRPLDEAG-VVGFKCFLCPSG-VDEFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKG 199 (447)
T ss_pred ECCCCCC-HHHHHHHHHCC-CEEEEEEECCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 1224640-67689988628-627888831565-77655589999999999998559879996588699999898998638
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCCCCC
Q ss_conf ----------014676545789999962069539970578589999987057----332023023100397886137888
Q gi|254781012|r 147 ----------FDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLN 212 (349)
Q Consensus 147 ----------~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~ 212 (349)
.....+.....+.+.+++.+++++|++|+|+.+++++|++++ ++|||+|||||.|+.+++.. ++
T Consensus 200 ~~~~~~~~~~~p~~~e~~ai~~~~~~a~~~g~~~~i~H~s~~~~~~~i~~a~~~G~~vt~e~~ph~l~l~~~~~~~--~~ 277 (447)
T cd01315 200 KRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLHIVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPD--GG 277 (447)
T ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHCCCHHHHHH--CC
T ss_conf 8646664144873799999999999988629936986237777899999999749965578622222089989850--49
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCC-----CCCCCCHHHHHHHHHHH--HHCCCCHH
Q ss_conf 311321346999999999999976994189713888653133215457-----75445436799999999--72069999
Q gi|254781012|r 213 PHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCG-----CAGIYTARNALNCLAQI--FEEENKLE 285 (349)
Q Consensus 213 ~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~-----~~g~~~~~~~~~~~~~~--~~~~~~L~ 285 (349)
+.+||+||||++++|++||+++.+|.+ |+|+|||+||+.++|...++ ..|+.+.++.++++... ..+..+|+
T Consensus 278 ~~~k~~pplr~~~~~~~l~~~l~~g~i-~~i~sDh~p~~~~~k~~~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~l~le 356 (447)
T cd01315 278 TEFKCAPPIRDAANQEQLWEALENGDI-DMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLE 356 (447)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCE-EEEEECCCCCCHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 631017211544559999998744981-7999489999988961356866551378741777899999999982999999
Q ss_pred HHHHHHHHCCHHHCCCCCC--------CCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 9999982431788188988--------85289994797178471122677771465797698338887
Q gi|254781012|r 286 NLESFVSINGATWYGIPVN--------TRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 286 ~l~~~~s~npa~~~gl~~~--------~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
++++++|.||||+|||+.. .|||+|+|++++|+|+.+.++|+++||||+ |++++|+|..
T Consensus 357 ~~v~~~T~nPA~~lgl~~~kG~I~~G~dADlvi~D~~~~~~v~~~~~~s~~~~sp~~-G~~~~g~v~~ 423 (447)
T cd01315 357 DIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDLYYKNKISPYV-GRTLKGRVHA 423 (447)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 999999788999849888877607898467899919998898868843758978837-9888778999
No 31
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=100.00 E-value=0 Score=405.08 Aligned_cols=333 Identities=14% Similarity=0.142 Sum_probs=255.1
Q ss_pred CEEEECCCCEEEEECCC--------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 65586466423750881--------7889874987418873999838951489898999999999998386884699501
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD--------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLM 73 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re--------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~ 73 (349)
.++++||+||+|+|+|+ +++.++++||++||+|||++|||+.|+.+..+.+..++++... ...+++.+
T Consensus 46 G~~V~PGfID~H~H~~~~~~~~~~~e~~~~g~~aa~~gGvTtv~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~~ 121 (447)
T cd01314 46 GKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADG----KSVIDYGF 121 (447)
T ss_pred CCEECCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCC----CCEEEEEE
T ss_conf 99994088987725788878864502288999999968916995168899998789999999998537----86355546
Q ss_pred EEEECCCCC--HHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC------
Q ss_conf 345278999--889987440687210221045510025654100688999999998739822202575555543------
Q gi|254781012|r 74 TIYLTETTD--PDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID------ 145 (349)
Q Consensus 74 ~~~lt~~~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~------ 145 (349)
...++.... ..++.+.... .+.+++.|+.. ......+...+.++|+++++.+.++.+|||+.+....
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~-G~~~~k~~~~~----~~~~~~~~~~l~~~~~~a~~~~~~~~~h~e~~~~~~~~~~~~~ 196 (447)
T cd01314 122 HMIITDWTDSVIEELPELVKK-GISSFKVFMAY----KGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLL 196 (447)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCCEEEEEECC----CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 899954887799999999983-87867787403----7962358799999999998639979992588579999999998
Q ss_pred ------------CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCC----CCCEEEECCCCCCCHHHHHCC
Q ss_conf ------------0014676545789999962069539970578589999987057----332023023100397886137
Q gi|254781012|r 146 ------------IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHD 209 (349)
Q Consensus 146 ------------~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak----~vtaEVTPHHL~lt~~d~~~~ 209 (349)
.+..+.+..+..+.+.+++.+++++||+|+|+.+++++|++++ +|++|+|||||+|+++++...
T Consensus 197 ~~G~~~~~~h~~~rp~~~e~~av~r~~~la~~~g~~~~i~His~~~~~~~i~~ar~~G~~v~~e~~~~~l~~~~~~~~~~ 276 (447)
T cd01314 197 AQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVSSKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKD 276 (447)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHCCCHHHHCCC
T ss_conf 65887645465668899999999999999998099689996076889999999997699288973410331789896346
Q ss_pred CC-CCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHC---CCC--CCCCCCHHHHHHHHHH--HHHCC
Q ss_conf 88-8311321346999999999999976994189713888653133215---457--7544543679999999--97206
Q gi|254781012|r 210 GL-NPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKES---SCG--CAGIYTARNALNCLAQ--IFEEE 281 (349)
Q Consensus 210 ~~-~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~---~~~--~~g~~~~~~~~~~~~~--~~~~~ 281 (349)
.. +..++|+||||+++++++||+++++|.+ ++|+|||+||..++|.. +|. +.|+.+.+..++++.. +..+.
T Consensus 277 ~~~~~~~~~~pplr~~~~~~~l~~~l~~G~i-~~i~sDh~p~~~~~k~~~~~~f~~~~~G~~g~e~~l~~~~~~~v~~g~ 355 (447)
T cd01314 277 WFEGAKYVCSPPLRPKEDQEALWDGLSSGTL-QTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGR 355 (447)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCCCCCHHHHHHCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 7533378606766998899999877635973-588647766677787635687644769987611218999999998289
Q ss_pred CCHHHHHHHHHHCCHHHCCCCC--------CCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 9999999998243178818898--------885289994797178471122677771465797698338887
Q gi|254781012|r 282 NKLENLESFVSINGATWYGIPV--------NTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 282 ~~L~~l~~~~s~npa~~~gl~~--------~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
++|+++++++|.||||+|||.. ..|||+|+||+++|+|+.+.+.|+++||||+ |++++|+|..
T Consensus 356 lsl~~~v~~~T~nPAk~lGl~~~kGsI~~G~dADlvi~Dp~~~~~v~~~~~~s~~~~sp~~-g~~~~g~v~~ 426 (447)
T cd01314 356 ITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTHHHNVDYNIFE-GMKVKGWPVV 426 (447)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEECHHHCCCCCCCCCCC-CCEEEEEEEE
T ss_conf 9999999998389999849888887637899777899959998898856674658837767-9799889999
No 32
>KOG2584 consensus
Probab=100.00 E-value=2.8e-45 Score=299.50 Aligned_cols=333 Identities=12% Similarity=0.060 Sum_probs=261.8
Q ss_pred CEEEECCCCEEEEECCC--------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 65586466423750881--------7889874987418873999838951489898999999999998386884699501
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD--------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLM 73 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re--------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~ 73 (349)
.+++|||+||.|+||.. +||.+||+||++||.|.|+||+=-.++....+.++. -.+.+..++.|++++
T Consensus 61 g~~ViPGgID~Hthlq~p~~G~ts~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv~afe~----wr~~Ad~k~cCDygl 136 (522)
T KOG2584 61 GKMVIPGGIDPHTHLQMPFMGMTSVDDFFQGTKAALAGGTTMIIDFVLPDKGTSLVEAFEK----WREWADPKVCCDYGL 136 (522)
T ss_pred CCEEECCCCCCCCEECCCCCCCCCHHHHHCCCHHHHCCCCEEEEEEECCCCCCHHHHHHHH----HHHHCCCCEEEEEEE
T ss_conf 7677358657521014655784022343022077763883599977548997308999999----886227852554214
Q ss_pred EEEECC--CCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC------
Q ss_conf 345278--999889987440687210221045510025654100688999999998739822202575555543------
Q gi|254781012|r 74 TIYLTE--TTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDID------ 145 (349)
Q Consensus 74 ~~~lt~--~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~------ 145 (349)
+.++|. ..-.+++........+.++++|++.. +.....+..++++|+.+++++...++|||+.+....
T Consensus 137 hv~It~W~~~v~eem~~l~~ekGvnsF~~fmayk----~~~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l 212 (522)
T KOG2584 137 HVGITWWSPSVKEEMEILVKEKGVNSFKFFMAYK----DLYMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLL 212 (522)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEC----CCCCCCHHHHHHHHHHHHHCCHHHEEHHHCCHHHHHHHHHHH
T ss_conf 6765425743488998876542753277663205----542447899999999986416431312116405554335788
Q ss_pred ------------CHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHH----CCCCCEEEECCCCCCCHHHHHCC
Q ss_conf ------------00146765457899999620695399705785899999870----57332023023100397886137
Q gi|254781012|r 146 ------------IFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNN----ATNIAGSITVHHLIINRNAIFHD 209 (349)
Q Consensus 146 ------------~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~----ak~vtaEVTPHHL~lt~~d~~~~ 209 (349)
.+-.|-+..++.|++.+++..+|++.+.|+.++.+.++|.. |+-|..|++.-+|.++...+.+.
T Consensus 213 ~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvvhVmsksaa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~ 292 (522)
T KOG2584 213 ELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVVHVMSKSAADAIALARKKGRVVFGEPITASLGTDGSHYWSK 292 (522)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHCCCEEECCCCHHHHCCCCHHHCCC
T ss_conf 71786866443358446667899999999886289820588852637889999874384661341046544663432357
Q ss_pred C--CCCCEEECCCCCCHH-HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCC-----CCCCCCHHHHHHHHHHHH--H
Q ss_conf 8--883113213469999-99999999976994189713888653133215457-----754454367999999997--2
Q gi|254781012|r 210 G--LNPHYYCLPIPKREK-HRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCG-----CAGIYTARNALNCLAQIF--E 279 (349)
Q Consensus 210 ~--~~~~~k~nPPlR~~~-dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~-----~~g~~~~~~~~~~~~~~~--~ 279 (349)
. .-..++|.||||+.. .++.||++|..|++ ...||||+|.+.+.|....+ +-|+-|.+.-++++.+-- .
T Consensus 293 ~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L-~~tgSdhctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~ 371 (522)
T KOG2584 293 DWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDL-QLTGSDHCTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHS 371 (522)
T ss_pred CHHHCCEEEECCCCCCCCCCHHHHHHHHHCCCC-CEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEHHCCC
T ss_conf 810201354579988899887899999854842-0030278777778874266761308776454201632333200023
Q ss_pred CCCCHHHHHHHHHHCCHHHCCCCCCC--------CEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEE
Q ss_conf 06999999999824317881889888--------528999479717847112267777146579769833888
Q gi|254781012|r 280 EENKLENLESFVSINGATWYGIPVNT--------RKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVM 344 (349)
Q Consensus 280 ~~~~L~~l~~~~s~npa~~~gl~~~~--------~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~ 344 (349)
+.....++|.++|+|.||+|||.++| +||+++|++...++..++.+++.+.+.|+ |++.+|.+.
T Consensus 372 G~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwdp~at~tIS~~th~~~~d~NifE-Gm~~~G~pl 443 (522)
T KOG2584 372 GKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPNATKTISAKTHHSANDFNIFE-GMTVHGVPL 443 (522)
T ss_pred CCCCCCCEEEEECCCCHHHEECCCCCCEECCCCCCCEEEECCCCCEEECCCCCCCCCCCEEEC-CCEECCEEE
T ss_conf 756734179995266343334057675031068776799878754686200100144430005-857626058
No 33
>PRK09061 D-glutamate deacylase; Validated
Probab=99.97 E-value=8.8e-30 Score=203.67 Aligned_cols=295 Identities=10% Similarity=-0.023 Sum_probs=172.0
Q ss_pred CEEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-------
Q ss_conf 655864664237508817889874987418873999838-951489898999999999998386884699501-------
Q gi|254781012|r 2 KKISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMP-NIDPPIITVDDACAYRQRILNALPPEYDFSPLM------- 73 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~MP-NT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~------- 73 (349)
.++++||+||+|+|+++- ..+.+++.+||||+++|+ ++.|+..-.... +.+ ....++......
T Consensus 51 G~~V~PGfID~HtH~~~~---~~~~~~~~~GvTT~v~~~~g~~p~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~ 121 (496)
T PRK09061 51 GLVVAPGFIDLHAHGQSL---PAYRMQAFDGVTTTLELEVGVLPVARWYAEQ-EGR-----GRLLNYGASVGWTPARIAA 121 (496)
T ss_pred CCEECCCCEEEEECCCCC---CCCHHHHCCCEEEEEECCCCCCCHHHHHHHH-HCC-----CCEECHHHHCCCHHHHHHH
T ss_conf 999864400421068999---7667887599689997489985335678755-322-----4401202113630555554
Q ss_pred -------------------EEEECCCCCHHHHHHHHHCCC----EEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf -------------------345278999889987440687----210221045510025654100688999999998739
Q gi|254781012|r 74 -------------------TIYLTETTDPDDVEKGFTSQL----VQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIG 130 (349)
Q Consensus 74 -------------------~~~lt~~~~~~~~~~~~~~~~----~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~ 130 (349)
..+.......+++.++..... -+++.+. +...-.+-.....+.+.++.+++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~m~~l~~~~l~~Ga~G~s----~~~~y~p~~~~~El~~l~~~~~~~~ 197 (496)
T PRK09061 122 MTGPQAEGTIAWFGKAFSDNRWIERVATAAELAEILNRIEQGLDEGGLGIG----IGAAYAPGAGHKELYELCRLAARRD 197 (496)
T ss_pred HCCCCCHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCEEE----ECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 315531135666544310351110489989999999999999981782152----1244477788899999999987539
Q ss_pred CCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH------HHHHHHHHHCC----CCCEEEECCCCC
Q ss_conf 82220257555554300146765457899999620695399705785------89999987057----332023023100
Q gi|254781012|r 131 MPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITT------SNGIDYVNNAT----NIAGSITVHHLI 200 (349)
Q Consensus 131 ~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST------~~sv~lir~ak----~vtaEVTPHHL~ 200 (349)
.++.+|........ .+.+.....+.+.+++.+|+++||+|+|+ .+.+++|++|+ +||||+|||++.
T Consensus 198 ~~~~~h~r~~~~~~----~~~~~eai~~~i~la~~~g~~vhi~H~~~~~~~~~~~~~~~i~~A~~~G~~vt~e~~P~~~~ 273 (496)
T PRK09061 198 VPTYTHVRYGSNVE----PRSSFEAYQELIGLAAATGAHMHICHINSTSLQDIPLCAELVQTAQAQGLDVTTEAYPYGAG 273 (496)
T ss_pred CEEEEEECCCCCCC----HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 82899604677667----07799999999998887399479996436664567899999999997799688874156412
Q ss_pred CC--------HH-------------------------HHHC---CCCC--CCEEECCCCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 39--------78-------------------------8613---7888--311321346999999999999976994189
Q gi|254781012|r 201 IN--------RN-------------------------AIFH---DGLN--PHYYCLPIPKREKHRLSLRKAALSGNPRFF 242 (349)
Q Consensus 201 lt--------~~-------------------------d~~~---~~~~--~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~ 242 (349)
++ +. .+.. ...+ ....++|+.+...+++.++..+.+.. .+
T Consensus 274 ~t~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 351 (496)
T PRK09061 274 STVIGAAIFRDPGWQERMGVGYGDLQMVATGKRLTQEEFAKYQANDPGALVLMHFLDVENNPSDRALLDVSVLFPG--VA 351 (496)
T ss_pred CCHHHHHHCCCHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCC--CE
T ss_conf 1302012306937887628975665411134667899999874438884589950585458014899999842888--26
Q ss_pred EECCCCCCCHHHHHCCCCC-----CCC---CCHHHHHHH-HHH-HHH-CCCCHHHHHHHHHHCCHHHC-----CCC----
Q ss_conf 7138886531332154577-----544---543679999-999-972-06999999999824317881-----889----
Q gi|254781012|r 243 LGTDSAPHWDSSKESSCGC-----AGI---YTARNALNC-LAQ-IFE-EENKLENLESFVSINGATWY-----GIP---- 302 (349)
Q Consensus 243 I~TDHAPH~~eeK~~~~~~-----~g~---~~~~~~~~~-~~~-~~~-~~~~L~~l~~~~s~npa~~~-----gl~---- 302 (349)
|+|||+||...+|....+. .+. +.....++. +.. +.+ +.++|++++.+||.|||++| ||+
T Consensus 352 i~sD~~~~~~~~~~~~~~~~~~~~~~~~~hp~~~g~~~~~l~~~vr~~~~lsLe~aV~~~T~~pA~~~~l~~~Gl~~rG~ 431 (496)
T PRK09061 352 IASDAMPWMLSDGKVYEGDAWPLPDDAVSHPRSAGTFARFLREYVRERKAVSLLEALRKCTLMPAQILENSVPAMRNKGR 431 (496)
T ss_pred EEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 98168522102544555655566666666774200489999998663685489999999989999988513357889736
Q ss_pred ---CCCCEEEEEECCC
Q ss_conf ---8885289994797
Q gi|254781012|r 303 ---VNTRKISLKRREQ 315 (349)
Q Consensus 303 ---~~~~~i~l~d~~~ 315 (349)
+..+||+|+||++
T Consensus 432 L~~G~~ADivIfDp~~ 447 (496)
T PRK09061 432 LQVGADADIVVFDPET 447 (496)
T ss_pred ECCCCCCCEEEECHHH
T ss_conf 3899817889988403
No 34
>cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid. Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides.
Probab=99.93 E-value=4.4e-23 Score=162.19 Aligned_cols=285 Identities=12% Similarity=0.037 Sum_probs=147.9
Q ss_pred EEEECCCCEEEEECCC----HHH-----HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 5586466423750881----788-----9874987418873999838951489898999999999998386884699501
Q gi|254781012|r 3 KISLRVPDDWHLHLRD----GEI-----LKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLM 73 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re----g~~-----~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~ 73 (349)
++++||+||+|||||+ +++ .....+++++|+||+++||||.|++.+.+.+....+. ... .........
T Consensus 50 ~~v~PG~ID~HvH~~~~g~~~~~~~~~~~~~~~~~~~~G~Tt~~~~~~t~~~~~~~~~~~~~~~~-~~~--~g~~~~~~~ 126 (387)
T cd01308 50 KILVPGFIDQHVHIIGGGGEGGPSTRTPEVTLSDLTTAGVTTVVGCLGTDGISRSMEDLLAKARA-LEE--EGITCFVYT 126 (387)
T ss_pred CEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHH-HHH--CCCEEEEEC
T ss_conf 99885875512266688888775557889999999977951897057888645579999999999-886--496699952
Q ss_pred EEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCE-ECCCCCCCCCCCCHHHHHH
Q ss_conf 345278999889987440687210221045510025654100688999999998739822-2025755555430014676
Q gi|254781012|r 74 TIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPL-CIHGEILNQDIDIFDRELM 152 (349)
Q Consensus 74 ~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i-~~H~E~~~~~~~~~~~E~~ 152 (349)
..+..+. .. .+ + .+... ...++.+...+... .-|... .+...+.
T Consensus 127 g~~~~p~---~~--------------~~--------~-~~~~~---~~~~~~~~~~g~~~~~~~~~~-----~p~~~~~- 171 (387)
T cd01308 127 GSYEVPT---RT--------------IT--------G-SIRKD---LLLIDKVIGVGEIAISDHRSS-----QPTVEEL- 171 (387)
T ss_pred CCCCCCH---HH--------------HH--------C-CHHHH---HHHHHHHHCCCCEEECCCCCC-----CCCHHHH-
T ss_conf 6656846---65--------------53--------2-06677---987787616671551034455-----6779999-
Q ss_pred HHHHHHHHHHHHHC---CCEEEEECCCHHHHHHHHHH----CCCCCEEEECCCCCCCHHHHHC--------------CCC
Q ss_conf 54578999996206---95399705785899999870----5733202302310039788613--------------788
Q gi|254781012|r 153 FIDKILDPLRNKLP---NLKIILEHITTSNGIDYVNN----ATNIAGSITVHHLIINRNAIFH--------------DGL 211 (349)
Q Consensus 153 ~~~~~l~~~~a~~~---~~~iHi~HiST~~sv~lir~----ak~vtaEVTPHHL~lt~~d~~~--------------~~~ 211 (349)
.....+....... ..-+|+..-+..++++.+.+ +.....+.+|+|+..+.+-+.. ...
T Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~l~~~~~~~~~~~~~i~~~~~~ 250 (387)
T cd01308 172 -ARIAAEARVGGLLGGKAGIVHIHLGDGKRALSPIFELIEETEIPITQFLPTHINRTAPLFEQGVEFAKMGGTIDLTSSI 250 (387)
T ss_pred -HHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCHHEEECCEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf -9999998766764388887999723657679999999980696354155421238677899999999759857884477
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHCCCCCCCCCCHHHHHHHHHHHH-HCCCCHHHHHH
Q ss_conf 8311321346999999999999976994189713888-653133215457754454367999999997-20699999999
Q gi|254781012|r 212 NPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSA-PHWDSSKESSCGCAGIYTARNALNCLAQIF-EEENKLENLES 289 (349)
Q Consensus 212 ~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHA-PH~~eeK~~~~~~~g~~~~~~~~~~~~~~~-~~~~~L~~l~~ 289 (349)
.+.+.++||+|..+...++|+....... ..+.||+. +++..+++......|+.+.+++++.+.... .+..+|+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~d~~~~~~~~~~~g~~~~~~~g~~~t~~~~~~~~v~~g~l~le~av~ 329 (387)
T cd01308 251 DPQFRKEGEVRPSEALKRLLEQGVPLER-ITFSSDGNGSLPKFDENGNLVGLGVGSVDTLLREVREAVKCGDIPLEVALR 329 (387)
T ss_pred CHHHCCCCCCCCHHHHHHHHHCCCCCCE-EEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 7543027766889999999974998643-999946999866410148551367675888999999999976999999999
Q ss_pred HHHHCCHHHCCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEE
Q ss_conf 98243178818898-------8852899947971784711226777714
Q gi|254781012|r 290 FVSINGATWYGIPV-------NTRKISLKRREQPIIFDEKITTSTGSIT 331 (349)
Q Consensus 290 ~~s~npa~~~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~t 331 (349)
++|.||||+|||.. ..|||+|+|++-. + +..+.+|++.
T Consensus 330 ~~T~NPAk~lgl~~kG~I~~G~dADlVi~D~dl~--v--~~v~~~G~~v 374 (387)
T cd01308 330 VITSNVARILKLRKKGEIQPGFDADLVILDKDLD--I--NSVIAKGQIM 374 (387)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC--E--EEEEECCEEE
T ss_conf 9858999974999998668898263899899998--6--5899988999
No 35
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=99.91 E-value=4.1e-22 Score=156.21 Aligned_cols=292 Identities=13% Similarity=0.066 Sum_probs=149.7
Q ss_pred CEEEECCCCEEEEECCC----HHH-----HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 65586466423750881----788-----987498741887399983895148989899999999999838688469950
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD----GEI-----LKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPL 72 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re----g~~-----~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~ 72 (349)
.++++||+||+|||+|. +.+ .....+++++|+|||++||+|.+.+.+.+.+..+.+. ... ...... .
T Consensus 50 G~~v~PG~ID~H~Hi~~~gg~~~~~~~~pe~~~~~~~~~GvTTv~~~~~~~~~~~~~~~~~~~~~~-~~~--~gi~~~-~ 125 (384)
T PRK10657 50 GKILVPGFIDQHVHIIGGGGEGGFTTRTPEVQLSDLTEAGITTVVGLLGTDSITRSPESLLAKARA-LEE--EGISAY-M 125 (384)
T ss_pred CCEEECCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHH-HHH--CCCEEE-E
T ss_conf 999914610042498888888776668906999999975975694577888656799999999999-886--396388-8
Q ss_pred EEEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCC-CCEECCCCCCCCCCCCHHHHH
Q ss_conf 1345278999889987440687210221045510025654100688999999998739-822202575555543001467
Q gi|254781012|r 73 MTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIG-MPLCIHGEILNQDIDIFDREL 151 (349)
Q Consensus 73 ~~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~-~~i~~H~E~~~~~~~~~~~E~ 151 (349)
+.+... .. ....+ .....+... +..+...+ ..+..|.+. .....|.
T Consensus 126 ~~g~~~--~~--------------------~~~~~--~~~~~d~~~----~~~v~g~g~~~~~~~~~~-----~~~~~e~ 172 (384)
T PRK10657 126 YTGSYH--VP--------------------VKTIT--GSIEKDIAL----IDKVIGVGEIAISDHRSS-----QPTVEEL 172 (384)
T ss_pred ECCCCC--CC--------------------CCCCC--HHHHHHHHH----HHHHHCCCEEEECCCCCC-----CCCHHHH
T ss_conf 516656--87--------------------10010--367878987----887506550653135445-----7889999
Q ss_pred HHH-HHH-HHHHHHHHCCCEEEEECC-CHHHHHHHHHHCC---CC-CEEEECCCCCCCHHHHHC----CCCCCC------
Q ss_conf 654-578-999996206953997057-8589999987057---33-202302310039788613----788831------
Q gi|254781012|r 152 MFI-DKI-LDPLRNKLPNLKIILEHI-TTSNGIDYVNNAT---NI-AGSITVHHLIINRNAIFH----DGLNPH------ 214 (349)
Q Consensus 152 ~~~-~~~-l~~~~a~~~~~~iHi~Hi-ST~~sv~lir~ak---~v-taEVTPHHL~lt~~d~~~----~~~~~~------ 214 (349)
... ... ....++.. ...+| .|+ ++.++++.+.+.. .+ ..+.+|+|+..+..-+.. ...+..
T Consensus 173 ~~~~~~~~~~~~l~~~-~~~~~-~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~l~~~~~~~~~~g~~id~~~~ 250 (384)
T PRK10657 173 ARLAAEARVGGLLSGK-PGVVH-FHMGDGKKGLQPLFELLENTDIPISQFLPTHVNRNEPLFEQGLEFAKKGGVIDLTTS 250 (384)
T ss_pred HHHHHHHHHHHHHCCC-CCEEE-EEECCCHHHHHHHHHHHHHCCCCEEEEECCHHCCCHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 9999998888886288-76799-982576889999999998359841687540322757799999999982883789856
Q ss_pred EEECCCCCCHHHHHHHHHHHHCCCCE--EEEECCCCCC-CHHHHHCCCCCCCCCCHHHHHHHHHH-HHHCCCCHHHHHHH
Q ss_conf 13213469999999999999769941--8971388865-31332154577544543679999999-97206999999999
Q gi|254781012|r 215 YYCLPIPKREKHRLSLRKAALSGNPR--FFLGTDSAPH-WDSSKESSCGCAGIYTARNALNCLAQ-IFEEENKLENLESF 290 (349)
Q Consensus 215 ~k~nPPlR~~~dr~aL~~ai~~G~i~--d~I~TDHAPH-~~eeK~~~~~~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~~ 290 (349)
....++++ .++++++++..|... ..++||+... +..+++......|+.+..+.++.+.. +....++|++++++
T Consensus 251 ~~~~~~~~---~~~~~~~~~~~gi~~~~i~~~sD~~~~~~~~~~~~~~~~~g~~~~~t~~~~~~~~v~~~glsl~~av~~ 327 (384)
T PRK10657 251 IDEEGEVA---PAEAIKRALEAGIPLERITLSSDGNGSLPKFDEDGNLTGLGVASVESLLETLRELVKDYGLSLEDALRP 327 (384)
T ss_pred CCCCCCCC---HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 66667657---499999999818994358996279888654133566156788878889999999999869999999999
Q ss_pred HHHCCHHHCCCC-------CCCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEEC
Q ss_conf 824317881889-------88852899947971784711226777714657976983
Q gi|254781012|r 291 VSINGATWYGIP-------VNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLY 340 (349)
Q Consensus 291 ~s~npa~~~gl~-------~~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~ 340 (349)
+|.||||+|||+ +..|||+|+|++. +-...+++|+|++.+ |+-|+
T Consensus 328 ~T~nPAk~lgl~~kG~I~~G~dADlvi~D~d~----~v~~v~~~G~~v~~~-g~~~~ 379 (384)
T PRK10657 328 LTSNVARVLKLKNKGEIAPGNDADLLVLDDDL----EIEQVIAKGKLMVKD-GKALV 379 (384)
T ss_pred HHHHHHHHHCCCCCCEECCCCCCCEEEECCCC----CEEEEEECCEEEEEC-CEEEE
T ss_conf 99999998299994401789944089998999----964899887999999-99988
No 36
>cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.87 E-value=9.3e-20 Score=141.65 Aligned_cols=271 Identities=13% Similarity=0.058 Sum_probs=123.5
Q ss_pred EEEECCCCEEEEECCCH-HH--HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC
Q ss_conf 55864664237508817-88--9874987418873999838951489898999999999998386884699501345278
Q gi|254781012|r 3 KISLRVPDDWHLHLRDG-EI--LKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTE 79 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg-~~--~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~ 79 (349)
++++||+||.|||+|++ .. .....++++||+|||++|+|+.+ .+.... +..+.+...... ......+...
T Consensus 30 ~~V~PGlID~HvH~~~~~~~~~~~~~~~~~~~GvTTvvd~~~~~~--~~~~~~---~~~~~~~~~~~~--~~~~~~~~~g 102 (338)
T cd01307 30 CYVSPGWIDLHVHVYQGGTRYGDRPDMIGVKSGVTTVVDAGSAGA--DNIDGF---RYTVIERSATRV--YAFLNISRVG 102 (338)
T ss_pred CEEECCEEEECCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCC--CCHHHH---HHHHHHHCCCCE--EEEEEEECCC
T ss_conf 999417256342899997566679888754158269996789998--767999---999976315636--8998620124
Q ss_pred CCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99988998744068721022104551002565410068899999999873982220257555554300146765457899
Q gi|254781012|r 80 TTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILD 159 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~ 159 (349)
..... .+ .+....+...+..++......-..+..|.+......... + ...+.
T Consensus 103 ~~~~~---------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~a 154 (338)
T cd01307 103 LVAQD---------------EL-------PDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGI--K----PLELA 154 (338)
T ss_pred CCCCC---------------CC-------CCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCH--H----HHHHH
T ss_conf 42443---------------45-------872117988999999976345346766422565000454--7----99999
Q ss_pred HHHHHHCCCEEEEECCCH-----HHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCC-CCCHHHHHHHHHH
Q ss_conf 999620695399705785-----8999998705733202302310039788613788831132134-6999999999999
Q gi|254781012|r 160 PLRNKLPNLKIILEHITT-----SNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPI-PKREKHRLSLRKA 233 (349)
Q Consensus 160 ~~~a~~~~~~iHi~HiST-----~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPP-lR~~~dr~aL~~a 233 (349)
..+++..++++++ |++. .+.+++++++ +++.|++... .+.+ .+..+-+..+|.+
T Consensus 155 ~~~a~~~~~~~~v-H~~~~~~~~~~~~~~~~~~-----~~~~h~~~~~--------------~~~~~~~~~~~~~~~~~a 214 (338)
T cd01307 155 KKIAKEADLPLMV-HIGSPPPILDEVVPLLRRG-----DVLTHCFNGK--------------PNGIVDEEGEVLPLVRRA 214 (338)
T ss_pred HHHHHHCCCCEEE-EECCCCHHHHHHHHHHHCC-----CEEEEEECCC--------------CCCEECCCHHHHHHHHHH
T ss_conf 9999864995799-9689826499999986448-----8799974478--------------873136742678999999
Q ss_pred HHCCCCEEEEE--CCCCCCCHHHHHCCCC------------CCCCCC-HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHH
Q ss_conf 97699418971--3888653133215457------------754454-36799999999720699999999982431788
Q gi|254781012|r 234 ALSGNPRFFLG--TDSAPHWDSSKESSCG------------CAGIYT-ARNALNCLAQIFEEENKLENLESFVSINGATW 298 (349)
Q Consensus 234 i~~G~i~d~I~--TDHAPH~~eeK~~~~~------------~~g~~~-~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~ 298 (349)
...|.+.+ ++ ++|.+....++....+ .....+ ...+...+........+|+++++++|.||||+
T Consensus 215 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~Glsl~~~v~~~T~npA~~ 293 (338)
T cd01307 215 RERGVIFD-VGHGTASFSFRVARAAIAAGLLPDTISSDIHGRNRTNGPVYALATTLSKLLALGMPLEEVIEAVTANPARM 293 (338)
T ss_pred HHCCCEEE-ECCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 97596899-75777766879999998559988575267665567785401227789999984998999999998999998
Q ss_pred CCCCC-------CCCEEEEEECCCCEEECHHHCCCCCCEEE
Q ss_conf 18898-------88528999479717847112267777146
Q gi|254781012|r 299 YGIPV-------NTRKISLKRREQPIIFDEKITTSTGSITI 332 (349)
Q Consensus 299 ~gl~~-------~~~~i~l~d~~~~~~v~~~~~~sk~~~tp 332 (349)
|||+. ..+||+|+|+++.-+. .-.+||++-.
T Consensus 294 lGl~~kG~I~~G~dADlvi~D~~~~~~~---~~~~~g~~~~ 331 (338)
T cd01307 294 LGLAEIGTLAVGYDADLTVFDLKDGRVE---LVDSEGDTLI 331 (338)
T ss_pred HCCCCCCCCCCCCCCCEEEEECCCCCEE---EEECCCCEEE
T ss_conf 1999997189899667899976778468---9987998997
No 37
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=99.80 E-value=3.6e-19 Score=138.00 Aligned_cols=279 Identities=13% Similarity=0.080 Sum_probs=151.7
Q ss_pred EEEECCCCEEEEECCCHHHH---HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE-EEEC
Q ss_conf 55864664237508817889---8749874188739998389514898989999999999983868846995013-4527
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEIL---KTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMT-IYLT 78 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~---~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~-~~lt 78 (349)
.++.||+||+|||++.+... .....+..+|||||+||.++-+ .|... +++.+...++.......... .+++
T Consensus 53 ~~V~PGlID~H~H~~~~~~~~g~~pD~~~~~~GVTTvVDaGsaG~--~n~~~---f~~~vi~~sktrv~aflni~~~G~~ 127 (387)
T PRK12394 53 MIVTPGLIDYHAHVFYDATEGGVRPDMYMPPNGVTTVVDAGSAGT--ANFDA---FYRTVICASKVRIKAFLTVSPPGQT 127 (387)
T ss_pred CEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC--CCHHH---HHHHHHHHHCCEEHHHHHHHHHCCC
T ss_conf 888468478734014688657638111014678565872699875--13688---8875222103221213454653044
Q ss_pred ---CCCCH-----HHHHHHHH--CCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHH
Q ss_conf ---89998-----89987440--687210221045510025654100688999999998739822202575555543001
Q gi|254781012|r 79 ---ETTDP-----DDVEKGFT--SQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFD 148 (349)
Q Consensus 79 ---~~~~~-----~~~~~~~~--~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~ 148 (349)
+..+. +...+... ...+.++|..... ++.+-....-+.++.+.+.+.+.|+++|.+++.....
T Consensus 128 ~~~e~~d~~~id~~~~~~~~~~~~d~ivGiK~r~~~----~~v~~~g~~pl~~a~e~a~~~~lplmvH~~~~~~~~~--- 200 (387)
T PRK12394 128 WSQENYDPDNIDENKIHALFRQYRNVLQGLKLKVQT----EDIAEYGLKPLTESLRIANDLRCPVAIHSTHPVVPMK--- 200 (387)
T ss_pred CCHHHCCHHHCCHHHHHHHHHHCHHHEEEEEEEEEC----CCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHH---
T ss_conf 663336965578999999998672423556999871----5534357069999999986559818997889998999---
Q ss_pred HHHHHHHHHH--HHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCE----EEECCCCCCCHHHHHCCCCCCCEEECCCCC
Q ss_conf 4676545789--9999620695399705785899999870573320----230231003978861378883113213469
Q gi|254781012|r 149 RELMFIDKIL--DPLRNKLPNLKIILEHITTSNGIDYVNNATNIAG----SITVHHLIINRNAIFHDGLNPHYYCLPIPK 222 (349)
Q Consensus 149 ~E~~~~~~~l--~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vta----EVTPHHL~lt~~d~~~~~~~~~~k~nPPlR 222 (349)
| ..+..+ ++..-. +..+-+..+.+..+.++.+++|++.+. ...++|+.|
T Consensus 201 -e--i~~~lr~GDI~tH~-f~~~~~~i~~~~g~v~~~v~~A~~rGv~fDvghG~~sFsf--------------------- 255 (387)
T PRK12394 201 -E--LVSLLRRGDIIAHA-FHGKGSTILTDEGAVLAEVRQARERGVIFDAANGRSHFSM--------------------- 255 (387)
T ss_pred -H--HHHHHCCCCEEEEE-CCCCCCCEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCH---------------------
T ss_conf -9--99874569889862-1588886468887482999987508768993588885468---------------------
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC
Q ss_conf 99999999999976994189713888653133215457754454367999999997206999999999824317881889
Q gi|254781012|r 223 REKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIP 302 (349)
Q Consensus 223 ~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~ 302 (349)
+..|.| +..|..-|.|+||+..+.. -.-+++.+++.++- .+.-..+|+++++.+|.|||+++||.
T Consensus 256 -~~a~~a----l~~G~~PdtISTDl~~~~~-------~~~pv~~l~~~msk---~l~lG~~L~evI~~~T~nPA~~lgl~ 320 (387)
T PRK12394 256 -NTARRA----IANGFLPDIISSDLSTITK-------LAWPVYALPWILSK---YLALGVALTDVINACTHTPAVLMGMA 320 (387)
T ss_pred -HHHHHH----HHCCCCCCEEECCCCCCCC-------CCCCHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf -999999----9726886524046520101-------57736677889999---98708999999999868899980987
Q ss_pred C--------CCCEEEEEECCC-CEEECHHH---CCCCCCEEEC
Q ss_conf 8--------885289994797-17847112---2677771465
Q gi|254781012|r 303 V--------NTRKISLKRREQ-PIIFDEKI---TTSTGSITIF 333 (349)
Q Consensus 303 ~--------~~~~i~l~d~~~-~~~v~~~~---~~sk~~~tpF 333 (349)
+ ..|||+++|.++ +|.+..+. ...+.+..|.
T Consensus 321 ~~lG~L~~G~~ADitIf~~~~g~~~~~D~~g~~~~~~~~l~p~ 363 (387)
T PRK12394 321 AEIGTLAPGAFADIAIFKLKNRHVEFADIHGETLTGTHVLVPQ 363 (387)
T ss_pred CCCCEECCCCCCCEEEEEEECCCEEEEECCCCEEEEEEEEEEE
T ss_conf 5574117998567899998258658896899989752898676
No 38
>PRK09237 dihydroorotase; Provisional
Probab=99.79 E-value=2.3e-18 Score=133.05 Aligned_cols=291 Identities=16% Similarity=0.094 Sum_probs=127.8
Q ss_pred CEEEECCCCEEEEECCCHH-H--HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE-EEE
Q ss_conf 6558646642375088178-8--98749874188739998389514898989999999999983868846995013-452
Q gi|254781012|r 2 KKISLRVPDDWHLHLRDGE-I--LKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMT-IYL 77 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Reg~-~--~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~-~~l 77 (349)
.++++||+||.|||++++. . ...+.+++++|+|||++|+|+.| .+.+. ++..+.+.......-..... .+.
T Consensus 52 G~~V~PG~ID~HvH~~~~~~~~~~~~~~~a~~~GvTTvvd~g~~~~--~~~~~---~~~~~~~~~~~~i~~~l~~~~~g~ 126 (384)
T PRK09237 52 GKYVSPGWIDLHVHVYPGSTIYGDEPDEVGVKSGVTTVVDAGSAGA--DNIDD---FRELTIEASKTRVLAFLNISRIGL 126 (384)
T ss_pred CCEECCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCC--CCHHH---HHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 9997768827233888888766768668787558517860699985--53899---999985421441787631100046
Q ss_pred CCC--------CCHHHHHHHHH-C-CCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCH
Q ss_conf 789--------99889987440-6-8721022104551002565410068899999999873982220257555554300
Q gi|254781012|r 78 TET--------TDPDDVEKGFT-S-QLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIF 147 (349)
Q Consensus 78 t~~--------~~~~~~~~~~~-~-~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~ 147 (349)
... .......+... . ..+.+++......... . .....+..+.+...+.+.++++|.......
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~k~~~~~~~~~-~---~~~~~~~~a~~~a~~~~~~~~vH~~~~~~~---- 198 (384)
T PRK09237 127 LAQDELANLRDIDADAVAEAVEKNPDFIVGIKARMSKSVVG-D---NGITPLELAKEIARENNLPLMVHIGNNPPD---- 198 (384)
T ss_pred CCCCCCCCHHHCCHHHHHHHHHHCCCCEEEEEEEECCCCCC-C---CCHHHHHHHHHHHHHCCCCEEEECCCCHHH----
T ss_conf 46755343322698999999986715567677752156336-5---544899999999987599679982897233----
Q ss_pred HHHHHHHHHHHHHHHHH-----HCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCC
Q ss_conf 14676545789999962-----0695399705785899999870573320230231003978861378883113213469
Q gi|254781012|r 148 DRELMFIDKILDPLRNK-----LPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPK 222 (349)
Q Consensus 148 ~~E~~~~~~~l~~~~a~-----~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR 222 (349)
.+...+..... .+..+.+..+.++.+..+.++++...+.-+..-| .... .
T Consensus 199 ------~~~~~~~~~~g~~~~H~~~~~~~~~~~~~~~~~~~i~~a~~~G~~~~vgh------------g~~~------~- 253 (384)
T PRK09237 199 ------LDEVVELLRPGDILTHCFNGKPNGILTEDGELRPSVRRALERGVRLDVGH------------GTAS------F- 253 (384)
T ss_pred ------HHHHHHHHHCCCEEEEEECCCCCCEECCCCHHHHHHHHHHHCCCEEEEEC------------CCCC------C-
T ss_conf ------99999987469889997047788411465128899999997497899826------------8765------6-
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC
Q ss_conf 99999999999976994189713888653133215457754454367999999997206999999999824317881889
Q gi|254781012|r 223 REKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIP 302 (349)
Q Consensus 223 ~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~ 302 (349)
.-+...+++..|..-+.|+||..+.. ... .++++++..+ ........+|+++++++|.||||+|||+
T Consensus 254 ---~~~~a~~~~~~G~~p~~i~tD~~~~~--~~~-----g~~~~l~~~~---~~~~~~Glsl~eav~~~T~nPA~~lGL~ 320 (384)
T PRK09237 254 ---SFKVARAAIAAGILPDTISTDIYCRN--RIN-----GPVYSLATTM---SKFLALGMPLEEVIAAVTKNAADALKLP 320 (384)
T ss_pred ---CHHHHHHHHHCCCCCCEECCCCCCCC--CCC-----CCEEHHHHHH---HHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf ---89999999866986636415656556--678-----7500199999---9999839999999999978999971998
Q ss_pred C-------CCCEEEEEECCC-CEEE---CHHHCCCCCCEEECCCCEEECCEEEE
Q ss_conf 8-------885289994797-1784---71122677771465797698338887
Q gi|254781012|r 303 V-------NTRKISLKRREQ-PIIF---DEKITTSTGSITIFNPIFPLYWEVML 345 (349)
Q Consensus 303 ~-------~~~~i~l~d~~~-~~~v---~~~~~~sk~~~tpF~~g~~l~w~V~~ 345 (349)
. ..+||+|+|+++ +++. +.+......-.||+-+ -.+|||-.
T Consensus 321 ~kG~I~~G~dADLVI~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 372 (384)
T PRK09237 321 EKGRLQVGADADLTIFTLKDGPFTLVDSEGDSLIAERLLTPLAA--VRGGKVYE 372 (384)
T ss_pred CCCCCCCCCCCCEEEEEEECCCEEEEECCCCEEEEEEEEEEEEE--EECCEEEE
T ss_conf 88863799966789998307954778589998973068868899--99999998
No 39
>TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown.
Probab=99.78 E-value=1.5e-17 Score=128.06 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=61.3
Q ss_pred CCCCC-HHHHHHHHHHHHCCCCEEEEECCCCCCCH--HHH--HCCCCC----------CCCCCHHHHHHH-HHHHHHCCC
Q ss_conf 34699-99999999999769941897138886531--332--154577----------544543679999-999972069
Q gi|254781012|r 219 PIPKR-EKHRLSLRKAALSGNPRFFLGTDSAPHWD--SSK--ESSCGC----------AGIYTARNALNC-LAQIFEEEN 282 (349)
Q Consensus 219 PPlR~-~~dr~aL~~ai~~G~i~d~I~TDHAPH~~--eeK--~~~~~~----------~g~~~~~~~~~~-~~~~~~~~~ 282 (349)
.+++. .+-++++|+|.+.|.+.| ++...+.++. .++ +..+-+ .++.+-...++. +......+.
T Consensus 215 ~il~~~g~v~~~v~~A~~rGv~~d-vghg~~sfsf~~a~~a~~~g~~pdtistD~~~~~~~~gp~~~l~~~msk~l~~G~ 293 (365)
T TIGR03583 215 GILRETGEVKPSVLEAYNRGVILD-VGHGTASFSFHVAEKAKRAGIFPDTISTDIYIRNRINGPVYSLATVMSKFLALGY 293 (365)
T ss_pred CCCCCCCCHHHHHHHHHHCCEEEE-EECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 525778641389999986885999-8358765578899988636988874066533356668761205899999997499
Q ss_pred CHHHHHHHHHHCCHHHCCCCC-------CCCEEEEEECCC-CEEECHHH
Q ss_conf 999999998243178818898-------885289994797-17847112
Q gi|254781012|r 283 KLENLESFVSINGATWYGIPV-------NTRKISLKRREQ-PIIFDEKI 323 (349)
Q Consensus 283 ~L~~l~~~~s~npa~~~gl~~-------~~~~i~l~d~~~-~~~v~~~~ 323 (349)
+|+++++++|.||||+|||+. ..|||+++|+++ ++.+..+.
T Consensus 294 sL~~vI~~~T~nPAk~l~L~~kG~L~~G~dADitIfdl~~~~~~~~D~~ 342 (365)
T TIGR03583 294 SLEEVIEKVTKNAAEILKLTQKGRLQEGYDADLTIFTVKAEPKKLTDSE 342 (365)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCEEEEECC
T ss_conf 9999999998899998498888752799856789999846954788589
No 40
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=99.69 E-value=1.2e-14 Score=110.12 Aligned_cols=188 Identities=10% Similarity=-0.027 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH---------HHHHHHHC
Q ss_conf 889999999987398222025755555430014676545789999962069539970578589---------99998705
Q gi|254781012|r 117 DRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSN---------GIDYVNNA 187 (349)
Q Consensus 117 ~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~---------sv~lir~a 187 (349)
..+....+.+.+.+.++..|..... ..... .....+......+.++|++|++... .++.++++
T Consensus 199 ~e~~~~~~~a~~~~~~~~~h~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ 270 (415)
T cd01297 199 AELVALARVAARYGGVYQTHVRYEG------DSILE--ALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAA 270 (415)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCC------CCHHH--HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999972985787306775------20678--999999999862997899987436731023477799999999
Q ss_pred CCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCH
Q ss_conf 73320230231003978861378883113213469999999999999769941897138886531332154577544543
Q gi|254781012|r 188 TNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTA 267 (349)
Q Consensus 188 k~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~ 267 (349)
......+++.+.-. +..... -+..+..+.+ +.++||+.|+..... +..+.
T Consensus 271 ~~~g~~v~~~~~~~------------------~~~~~~----~~~~~~~~~~-~~~~~D~~~~~~~~~-------~~~~~ 320 (415)
T cd01297 271 RAEGLQVTADVYPY------------------GAGSED----DVRRIMAHPV-VMGGSDGGALGKPHP-------RSYGD 320 (415)
T ss_pred HHCCCEEEECCCCC------------------CCCCHH----HHHHHHHCCC-CEEEECCCCCCCCCC-------CHHHH
T ss_conf 97498465231476------------------556527----8999971898-258705676777552-------01345
Q ss_pred HHHHHHHHHHH-HCCCCHHHHHHHHHHCCHHHCCCC-------CCCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEE-
Q ss_conf 67999999997-206999999999824317881889-------888528999479717847112267777146579769-
Q gi|254781012|r 268 RNALNCLAQIF-EEENKLENLESFVSINGATWYGIP-------VNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFP- 338 (349)
Q Consensus 268 ~~~~~~~~~~~-~~~~~L~~l~~~~s~npa~~~gl~-------~~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~- 338 (349)
....+...+. .+..++++.++++|.||||+|||+ +..|||+|+|++. .-+...+.. .+.||. |.+
T Consensus 321 -~~~~l~~~~~~~~~l~~~~ai~~~T~n~A~~lgl~drGsL~~Gk~ADlVI~D~~~--~~~~~~~~~--~~~~~~-~~~~ 394 (415)
T cd01297 321 -FTRVLGHYVRERKLLSLEEAVRKMTGLPARVFGLADRGRIAPGYRADIVVFDPDT--LADRATFTR--PNQPAE-GIEA 394 (415)
T ss_pred -HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCC--CCCCCCCCC--CCCCCC-CEEE
T ss_conf -5788877653305889999999996999998299998623899918889987421--246564236--678888-8389
Q ss_pred --ECCEEEEECC
Q ss_conf --8338887416
Q gi|254781012|r 339 --LYWEVMLHDN 348 (349)
Q Consensus 339 --l~w~V~~~~~ 348 (349)
+.|+|+++|-
T Consensus 395 ~~~~g~~~~~~~ 406 (415)
T cd01297 395 VLVNGVPVVRDG 406 (415)
T ss_pred EEECCEEEEECC
T ss_conf 999999999999
No 41
>pfam01979 Amidohydro_1 Amidohydrolase family. This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <= D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included.
Probab=99.66 E-value=9e-15 Score=110.80 Aligned_cols=281 Identities=13% Similarity=0.008 Sum_probs=116.4
Q ss_pred EEECCCCEEEEECCC---------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 586466423750881---------78898749874188739998389514898989999999999983868846995013
Q gi|254781012|r 4 ISLRVPDDWHLHLRD---------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMT 74 (349)
Q Consensus 4 l~lp~~~D~HvH~Re---------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~ 74 (349)
|++||+||.|||++. ++..++++++++|||||+++|+++.+......... .+. ...... ......
T Consensus 1 iv~PG~ID~H~H~~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~~~~~~~~~~~~~~~~~--~~~-~~~~~~---~~~~~~ 74 (307)
T pfam01979 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEI--MEG-LAAAPK---LEPNVG 74 (307)
T ss_pred CEEECEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHH--HHH-HHHCCC---CCCCCC
T ss_conf 88127440743849878665679999999999999579289973776664024579999--987-650352---013332
Q ss_pred EEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCH-H-HHHH
Q ss_conf 4527899988998744068721022104551002565410068899999999873982220257555554300-1-4676
Q gi|254781012|r 75 IYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIF-D-RELM 152 (349)
Q Consensus 75 ~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~-~-~E~~ 152 (349)
.+..... ............ .............+.+............+.+......... . .+..
T Consensus 75 ~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (307)
T pfam01979 75 LLLKGSV-----------GGRAELGEVVID---GAGEEAKAGADLIKVIEDGGKTAKAIDGVLPALAPHDPPTVSHEGLK 140 (307)
T ss_pred EECCCCC-----------CCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf 0024546-----------765432222100---00044565899999999876403320214423574222225899999
Q ss_pred H-HHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHH--
Q ss_conf 5-4578999996206953997057858999998705733202302310039788613788831132134699999999--
Q gi|254781012|r 153 F-IDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLS-- 229 (349)
Q Consensus 153 ~-~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~a-- 229 (349)
. .............+..++ .|+.........-.+...+.+.++|........+.. .+......|. +......
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~ 215 (307)
T pfam01979 141 NEVELAEETEEAEKLGLLVH-IHAAEASGEVNAILGGVDLLAHCLHLDDEAIELLKE--AGSGIAHCPL--SNESILHRG 215 (307)
T ss_pred HHHHHHHHHHHHHCCCCEEE-EEECCCCHHHHHHHCCCEEEEEEEECCHHHHHHHHH--CCCCEEECCC--CCHHHHCCC
T ss_conf 99999876776541695799-997576146788750650576553112679999997--3994632344--313333233
Q ss_pred ---HHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHCCHHHCCCCC--
Q ss_conf ---99999769941897138886531332154577544543679999999-972069999999998243178818898--
Q gi|254781012|r 230 ---LRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQ-IFEEENKLENLESFVSINGATWYGIPV-- 303 (349)
Q Consensus 230 ---L~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~-~~~~~~~L~~l~~~~s~npa~~~gl~~-- 303 (349)
.+........ .-+.+++.+.....++......+ +.......... ......++.+.++++|.||||++|+..
T Consensus 216 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~al~~aT~n~A~~lgl~~~~ 292 (307)
T pfam01979 216 GRFSLMSGDAQGI-GELGSGGARLARLADKGGVVGLG--TDGAGLNGKDFYLDPDGLSPIEALRMATINPAKALGLDDRV 292 (307)
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCCEEC--CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 2012321111122-31344544337899845773203--21266789987442579999999999999999996899992
Q ss_pred ------CCCEEEEEE
Q ss_conf ------885289994
Q gi|254781012|r 304 ------NTRKISLKR 312 (349)
Q Consensus 304 ------~~~~i~l~d 312 (349)
..+||+|+|
T Consensus 293 G~I~~Gk~ADlvi~D 307 (307)
T pfam01979 293 GSIEVGKDADLVVVD 307 (307)
T ss_pred CEECCCCCCCEEEEC
T ss_conf 554878837879869
No 42
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=99.62 E-value=1.5e-13 Score=103.25 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=60.3
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC-----
Q ss_conf 99999769941897138886531332154577544543679--99999997206999999999824317881889-----
Q gi|254781012|r 230 LRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNA--LNCLAQIFEEENKLENLESFVSINGATWYGIP----- 302 (349)
Q Consensus 230 L~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~--~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~----- 302 (349)
+.+.++.|.. ..|||||+|+.... ..+.....+ +...........++.+.++.+|.||||+||++
T Consensus 286 ~~~l~~~Gv~-v~igTD~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~eal~~~T~n~A~~lgl~~~GsI 357 (411)
T cd01298 286 VPEMLEAGVN-VGLGTDGAASNNNL-------DMFEEMRLAALLQKLAHGDPTALPAEEALEMATIGGAKALGLDEIGSL 357 (411)
T ss_pred HHHHHHCCCC-EEEECCCCCCCCCC-------CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999875995-79956889889974-------689999999999997526777899999999999999999498997516
Q ss_pred --CCCCEEEEEECCCCEEEC-----HHHCCCCCCEEECCCCEEECCEEEEEC
Q ss_conf --888528999479717847-----112267777146579769833888741
Q gi|254781012|r 303 --VNTRKISLKRREQPIIFD-----EKITTSTGSITIFNPIFPLYWEVMLHD 347 (349)
Q Consensus 303 --~~~~~i~l~d~~~~~~v~-----~~~~~sk~~~tpF~~g~~l~w~V~~~~ 347 (349)
+..|||+++|.+.+-..+ ....++...+..=. --..|||+.+|
T Consensus 358 ~~Gk~ADlvi~D~d~~~~~~~~~~~~~~~~~~~~~~i~~--v~~~g~~v~~~ 407 (411)
T cd01298 358 EVGKKADLILIDLDGPHLLPVHDPISHLVYSANGGDVDT--VIVNGRVVMED 407 (411)
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCE--EEECCEEEEEC
T ss_conf 999826889997999765786697999770289998349--99999999999
No 43
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=99.56 E-value=1.2e-13 Score=103.80 Aligned_cols=51 Identities=14% Similarity=-0.003 Sum_probs=38.4
Q ss_pred CEEEECCCCEEEEEC------CC---HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 655864664237508------81---7889874987418873999838951489898999
Q gi|254781012|r 2 KKISLRVPDDWHLHL------RD---GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDA 52 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~------Re---g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~ 52 (349)
.++++||+||+|||. .+ +.+.+.+.+++++|+||++.++.|.|+-.-...+
T Consensus 46 G~~v~PGlID~H~H~~~g~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~t~~~~~~~~~~ 105 (374)
T cd00854 46 GQYLVPGFIDIHIHGGGGADFMDGTAEALKTIAEALAKHGTTSFLPTTVTAPPEEIAKAL 105 (374)
T ss_pred CCEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf 999988900100179988887778999999999999964945996126789989999999
No 44
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=99.51 E-value=4.5e-11 Score=87.93 Aligned_cols=280 Identities=13% Similarity=0.105 Sum_probs=127.8
Q ss_pred CEEEECCCCEEEEECC-----C--------------------------HHHH----HHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 6558646642375088-----1--------------------------7889----874987418873999838951489
Q gi|254781012|r 2 KKISLRVPDDWHLHLR-----D--------------------------GEIL----KTVLRDTAKNFRRALVMPNIDPPI 46 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~R-----e--------------------------g~~~----~~t~aa~aGG~TtV~~MPNT~Ppi 46 (349)
.++++||+||.|+|+- . ++.. .+...++.+|+|+|..+.+..|..
T Consensus 44 G~~v~PGlID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~T~v~~~~~~~~~~ 123 (398)
T cd01293 44 GRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLEAIIAWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAA 123 (398)
T ss_pred CCEEEECCEEHHHCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCH
T ss_conf 98997170307258333623566654553502557888898774299999999999999999965961887643314522
Q ss_pred CCHHHHHHHHHHHHHHCCC--CCEEEEEEEEEECCCCCHHH-HHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf 8989999999999983868--84699501345278999889-98744068721022104551002565410068899999
Q gi|254781012|r 47 ITVDDACAYRQRILNALPP--EYDFSPLMTIYLTETTDPDD-VEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVL 123 (349)
Q Consensus 47 ~t~e~~~~~~~r~~~~~~~--~~~~~~~~~~~lt~~~~~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~l 123 (349)
.. ..++... +..+.... .......+...+........ ..+....+.-. + ++..-..... .....+..++
T Consensus 124 ~~-~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~~-~----g~~~~~~~~~-~~~~~l~~~~ 195 (398)
T cd01293 124 GL-KALEALL-ELREEWADLIDLQIVAFPQHGLLSTPGGEELMREALKMGADV-V----GGIPPAEIDE-DGEESLDTLF 195 (398)
T ss_pred HH-HHHHHHH-HHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCE-E----EECCCCCCCC-CHHHHHHHHH
T ss_conf 15-6999999-999984644340136447731246641899999999824600-6----4126656788-7799999999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH---------HHHHHHHHHCCCCCEEE
Q ss_conf 999873982220257555554300146765457899999620695399705785---------89999987057332023
Q gi|254781012|r 124 ERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITT---------SNGIDYVNNATNIAGSI 194 (349)
Q Consensus 124 e~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST---------~~sv~lir~ak~vtaEV 194 (349)
+.+.+.+.++.+|+...... ...................++.+.|.+. .+.++.+++ ..++.-.
T Consensus 196 ~~A~~~g~~v~~H~~e~~~~------~~~~~~~~~~~~~~~g~~~~~~~~H~~~l~~~~~~~~~~~~~~la~-~gv~v~~ 268 (398)
T cd01293 196 ELAQEHGLDIDLHLDETDDP------GSRTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAE-AGISVVS 268 (398)
T ss_pred HHHHHCCCCEEEEECCCCCC------HHHHHHHHHHHHHHCCCCCCEEHHHHHHCCCCCHHHHHHHHHHHHH-CCCEEEE
T ss_conf 99998499879954564440------3669999999999829976455654321537998899999999987-3987998
Q ss_pred ECCC-CCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 0231-003978861378883113213469999999999999769941897138886531332154577544543679999
Q gi|254781012|r 195 TVHH-LIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNC 273 (349)
Q Consensus 195 TPHH-L~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~ 273 (349)
||.. +++..... ..+...-.||+ .+.+..|. ...+|||.... +|.+.|-......+.+
T Consensus 269 ~p~~~~~l~~~~~----~~~~~~g~~~v---------~~l~~aGv-~v~lGtD~~~~-------~~~p~g~~~~~~~~~~ 327 (398)
T cd01293 269 LPPINLYLQGRED----TTPKRRGVTPV---------KELRAAGV-NVALGSDNVRD-------PWYPFGSGDMLEVANL 327 (398)
T ss_pred CCHHHHHHCCCCC----CCCCCCCCCCH---------HHHHHCCC-EEEECCCCCCC-------CCCCCCCHHHHHHHHH
T ss_conf 7504565344321----34444588889---------99997799-39965888878-------8888886549999999
Q ss_pred HHHHHH--CCCCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCE
Q ss_conf 999972--06999999999824317881889------888528999479717
Q gi|254781012|r 274 LAQIFE--EENKLENLESFVSINGATWYGIP------VNTRKISLKRREQPI 317 (349)
Q Consensus 274 ~~~~~~--~~~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~ 317 (349)
...... ...++.+..+++|.|||+.+|+. +..+||+++|.+.+-
T Consensus 328 ~~~~~~~~~~~~~~~al~~aT~~~A~~lGl~~g~i~~Gk~ADLVv~D~~~~~ 379 (398)
T cd01293 328 AAHIAQLGTPEDLALALDLITGNAARALGLEDYGIKVGCPADLVLLDAEDVA 379 (398)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEECCCHH
T ss_conf 9999589977789999999939999971999820176885648999689989
No 45
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=99.35 E-value=8.9e-11 Score=86.07 Aligned_cols=242 Identities=18% Similarity=0.123 Sum_probs=127.7
Q ss_pred CCEEEEECCC--------------------HHHHH----HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6423750881--------------------78898----74987418873999838951489898999999999998386
Q gi|254781012|r 9 PDDWHLHLRD--------------------GEILK----TVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALP 64 (349)
Q Consensus 9 ~~D~HvH~Re--------------------g~~~~----~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~ 64 (349)
+||.|+|+-+ ++... +...++.+|+|||++|..+.++...........+.+....
T Consensus 1 fID~H~H~~~~~~~~~~~~~~~~~~~~~t~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASA- 79 (275)
T ss_pred CEECCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC-
T ss_conf 9606744788878607415870545059999999999999999997696299865135884666999999999972555-
Q ss_pred CCCEEEEEEEEEECCC----CCHHHHHHHHH-CC--CEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCC
Q ss_conf 8846995013452789----99889987440-68--72102210455100256541006889999999987398222025
Q gi|254781012|r 65 PEYDFSPLMTIYLTET----TDPDDVEKGFT-SQ--LVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHG 137 (349)
Q Consensus 65 ~~~~~~~~~~~~lt~~----~~~~~~~~~~~-~~--~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~ 137 (349)
...........-... .......+... .. ....++.+.... ......+.+.+.++.+.+.+.++.+|+
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~~~~a~~~~~~i~~H~ 153 (275)
T cd01292 80 -GIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYT-----ATGLSDESLRRVLEEARKLGLPVVIHA 153 (275)
T ss_pred -CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCC-----CCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf -86898016867777333210479999999972565674698866877-----889999999999999997699389973
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH--HHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCE
Q ss_conf 7555554300146765457899999620695399705785--89999987057332023023100397886137888311
Q gi|254781012|r 138 EILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITT--SNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHY 215 (349)
Q Consensus 138 E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST--~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~ 215 (349)
...... ... ...+......+.++.+.|.+. .+.++++++. ++++.+||---.+.. ....+
T Consensus 154 ~e~~~~-------~~~---~~~l~~~~~l~~~~~~~H~~~~~~~~~~~l~~~-g~~v~~~P~sn~~l~----~~~~~--- 215 (275)
T cd01292 154 GELPDP-------TRA---LEDLVALLRLGGRVVIGHVSHLDPELLELLKEA-GVSLEVCPLSNYLLG----RDGEG--- 215 (275)
T ss_pred CCCCCC-------CHH---HHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHC-CCEEEECCHHHHHHC----CCCCC---
T ss_conf 687544-------359---999997488899858887540799999999985-995998815677744----47679---
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 32134699999999999997699418971388865313321545775445436799999999720699999999982431
Q gi|254781012|r 216 YCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSING 295 (349)
Q Consensus 216 k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~np 295 (349)
-|| +++.+..| +...||||.+|... .......+...........+++.+.++.+.||
T Consensus 216 --~~~---------~~~~~~~G-~~v~LgtD~~~~~~-----------~~~~~~~m~~~~~~~~~~~~~~~~l~~aT~n~ 272 (275)
T cd01292 216 --AEA---------LRRLLELG-IRVTLGTDGPPHPL-----------GTDLLALLRLLLKVLRLGLSLEEALRLATINP 272 (275)
T ss_pred --CCC---------HHHHHHCC-CEEEEECCCCCCCC-----------CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf --877---------89999687-97998389998899-----------83899999999997564899999999983874
Q ss_pred HHH
Q ss_conf 788
Q gi|254781012|r 296 ATW 298 (349)
Q Consensus 296 a~~ 298 (349)
||.
T Consensus 273 Ara 275 (275)
T cd01292 273 ARA 275 (275)
T ss_pred HCC
T ss_conf 279
No 46
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=99.35 E-value=3.7e-10 Score=82.25 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=49.7
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHH---CCCCHHHHHHHHHHCCHHHCCCC----
Q ss_conf 99999769941897138886531332154577544543679999999972---06999999999824317881889----
Q gi|254781012|r 230 LRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFE---EENKLENLESFVSINGATWYGIP---- 302 (349)
Q Consensus 230 L~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~---~~~~L~~l~~~~s~npa~~~gl~---- 302 (349)
+++.+..|.. ..||||++|.... ..++..--...++..... ...+..++.++.|.|+||.+|+.
T Consensus 291 ~~~l~~~Gv~-v~lGTDg~~~n~~--------~d~~~emr~a~l~~~~~~~~~~~l~~~~~l~~aTi~gA~alG~~d~iG 361 (445)
T PRK07228 291 IPDLLERGIN-VSLGADGAPCNNN--------LDAFTEMRQAALIQKPDLLGPTAMPARQVFEMATLGGAKAMGMEDELG 361 (445)
T ss_pred HHHHHHCCCE-EEEECCCCCCCCC--------HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999976990-8996788755786--------249999999999999864598768999999998688999819888765
Q ss_pred ----CCCCEEEEEECCCCEEEC
Q ss_conf ----888528999479717847
Q gi|254781012|r 303 ----VNTRKISLKRREQPIIFD 320 (349)
Q Consensus 303 ----~~~~~i~l~d~~~~~~v~ 320 (349)
+.++||+++|.+.+-..+
T Consensus 362 sLe~Gk~ADlvv~D~d~~~~~p 383 (445)
T PRK07228 362 SLEVGKKADLAILDLDGLHSTP 383 (445)
T ss_pred CCCCCCCCCEEEECCCCCCCCC
T ss_conf 4488872688999689876788
No 47
>cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.28 E-value=6.8e-10 Score=80.63 Aligned_cols=144 Identities=15% Similarity=0.052 Sum_probs=71.6
Q ss_pred EEECCCHHHHHH-HHHHCC----CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHH----H---HHHHCCC
Q ss_conf 970578589999-987057----332023023100397886137888311321346999999999----9---9997699
Q gi|254781012|r 171 ILEHITTSNGID-YVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSL----R---KAALSGN 238 (349)
Q Consensus 171 Hi~HiST~~sv~-lir~ak----~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL----~---~ai~~G~ 238 (349)
..+|..+...+. .++.+. +++++.+.+.- +..+.+.. .+......|+.......+.. . ..+.+|.
T Consensus 195 ~~~h~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~-~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (359)
T cd01309 195 VRIHAHRADDILTAIRIAKEFGIKITIEHGAEGY-KLADELAK--HGIPVIYGPTLTLPKKVEEVNDAIDTNAYLLKKGG 271 (359)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHHHH--CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999676789999999998649847997330187-79999997--49968968420133113655400455899998199
Q ss_pred CEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCC--------CCCEEEE
Q ss_conf 41897138886531332154577544543679999999972069999999998243178818898--------8852899
Q gi|254781012|r 239 PRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIPV--------NTRKISL 310 (349)
Q Consensus 239 i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~~--------~~~~i~l 310 (349)
+...++|||.. ... ......+........++.+.++.+|.||||++|+.. ..+||+|
T Consensus 272 v~~~~~tD~~~-~~~--------------~~~~~~~~~~~~~Gl~~~eal~~aT~n~A~~lgl~~~~Gsie~Gk~ADlVv 336 (359)
T cd01309 272 VAFAISSDHPV-LNI--------------RNLNLEAAKAVKYGLSYEEALKAITINPAKILGIEDRVGSLEPGKDADLVV 336 (359)
T ss_pred CEEEEECCCCC-CHH--------------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEE
T ss_conf 54999668875-417--------------599999999998099999999999999999949989850007888376899
Q ss_pred EECCCCEEECHHHCCCCCCEEECCCCEEE
Q ss_conf 94797178471122677771465797698
Q gi|254781012|r 311 KRREQPIIFDEKITTSTGSITIFNPIFPL 339 (349)
Q Consensus 311 ~d~~~~~~v~~~~~~sk~~~tpF~~g~~l 339 (349)
+|.+ |.. ..|+-..+-.+ |+.+
T Consensus 337 vd~d-PL~-----~~~~v~~v~~~-Gr~v 358 (359)
T cd01309 337 WNGD-PLE-----PTSKPEQVYID-GRLV 358 (359)
T ss_pred ECCC-CCC-----CHHHHHEEEEC-CEEE
T ss_conf 8999-666-----50122614679-9994
No 48
>cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria, the enzyme is part of histidine utilization (hut) operon.
Probab=99.27 E-value=1.3e-09 Score=78.95 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=85.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--EEEEECCCHHHHHHHHHHCC
Q ss_conf 5410068899999999873982220257555554300146765457899999620695--39970578589999987057
Q gi|254781012|r 111 HGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNL--KIILEHITTSNGIDYVNNAT 188 (349)
Q Consensus 111 ~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~--~iHi~HiST~~sv~lir~ak 188 (349)
.+..+.+...+.++.+.+.+.++.+|++....... ..+ +...+. -.|..|+ +.+.++.+++.
T Consensus 187 ~~~~~~~~~~~~~~~a~~~g~~~~~H~~~~~~~~~----------~~~----~~~~g~~~~~H~~~~-~~~~i~~l~~~- 250 (371)
T cd01296 187 KGAFSLEQSRRILEAAKEAGLPVKIHADELSNIGG----------AEL----AAELGALSADHLEHT-SDEGIAALAEA- 250 (371)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEHHHHCCCCH----------HHH----HHHCCCCCCCHHHHH-HHHHHHHHHHC-
T ss_conf 88668999999999999859946986354055318----------999----998099721078886-39999999973-
Q ss_pred CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHH
Q ss_conf 33202302310039788613788831132134699999999999997699418971388865313321545775445436
Q gi|254781012|r 189 NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTAR 268 (349)
Q Consensus 189 ~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~ 268 (349)
.+.+-.||-.-+. + .. + -||+| +.+..|.. ..+|||+.|..... ....
T Consensus 251 g~~~~~~P~~~~~----l-~~--~-----~~~~~---------~l~~aGv~-v~lGtD~~p~~~~~----------~~~~ 298 (371)
T cd01296 251 GTVAVLLPGTAFS----L-RE--T-----YPPAR---------KLIDAGVP-VALGTDFNPGSSPT----------SSMP 298 (371)
T ss_pred CCEEEECCHHHHH----H-CC--C-----CCCHH---------HHHHCCCC-EEEEECCCCCCCCH----------HHHH
T ss_conf 9808987514776----5-68--8-----76789---------99876997-67764799887703----------3799
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECCC
Q ss_conf 7999999997206999999999824317881889--------8885289994797
Q gi|254781012|r 269 NALNCLAQIFEEENKLENLESFVSINGATWYGIP--------VNTRKISLKRREQ 315 (349)
Q Consensus 269 ~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~~ 315 (349)
.. +...+...+.+..+..+..|.||||.+|+. +..+||+++|.+-
T Consensus 299 ~~--~~~a~~~~~l~~~eaL~~aT~n~A~~lg~~~~~GsLe~Gk~ADlvvlD~dp 351 (371)
T cd01296 299 LV--MHLACRLMRMTPEEALTAATINAAAALGLGETVGSLEVGKQADLVILDAPS 351 (371)
T ss_pred HH--HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEEECCC
T ss_conf 99--999999859999999999999999995898997525889834379995898
No 49
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=99.26 E-value=6.1e-10 Score=80.90 Aligned_cols=259 Identities=15% Similarity=0.093 Sum_probs=127.5
Q ss_pred CEEEECCCCEEEEECCC--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEE---
Q ss_conf 65586466423750881--7889874987418873999838951489898999999999998386884699501345---
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD--GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIY--- 76 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re--g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~--- 76 (349)
.+.++||+||.|+|.-. .....-.++++..|+|||+..|-..-.+...+.+....+. .+....+..+ ..++..
T Consensus 4 G~yv~PGfID~HvHiess~~tP~~~a~~~l~~GtTTvv~Dpheianv~G~~gi~~~l~~-~~~~p~~~~~-~~ps~vPa~ 81 (422)
T cd01295 4 GKYIVPGFIDAHLHIESSMLTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLED-AKKTPLDIFW-MLPSCVPAT 81 (422)
T ss_pred CCEECCCEEECCCCCCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHCCHHHHHHHHHH-HHCCCCEEEE-ECCCCCCCC
T ss_conf 79978487431278866654999999999856827994787899873789999999998-6128861899-777777758
Q ss_pred --ECC--CCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHH
Q ss_conf --278--9998899874406872102210455100256541006889999999987398222025755555430014676
Q gi|254781012|r 77 --LTE--TTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELM 152 (349)
Q Consensus 77 --lt~--~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~ 152 (349)
-+. ....+++.+......+.++...+.. -.-+.....+.+.++.+.+.++++.-|+-. .. . .
T Consensus 82 ~~e~~Ga~~~~~~~~~~~~~~~v~glgEvm~~-----~~v~~~d~~~~~~i~~a~~~g~~v~GHapg--~~-----g--~ 147 (422)
T cd01295 82 PFETSGAELTAEDIKELLEHPEVVGLGEVMDF-----PGVIEGDDEMLAKIQAAKKAGKPVDGHAPG--LS-----G--E 147 (422)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCC-----CCCCCCCHHHHHHHHHHHHCCCEEEEECCC--CC-----H--H
T ss_conf 87778882799999998618442423331365-----112468789999999999679889997899--99-----7--9
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf 54578999996206953997057858999998705733202302310039788613788831132134699999999999
Q gi|254781012|r 153 FIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRK 232 (349)
Q Consensus 153 ~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ 232 (349)
.+....+ .|...--...+-.+.++.++.+..+. + . .++ .. .|-++++.
T Consensus 148 ----~l~~~i~--aGi~~dHe~~~~ee~~e~l~~Gm~v~---------i-----r---~gs------~~---~nl~~l~~ 195 (422)
T cd01295 148 ----ELNAYMA--AGISTDHEAMTGEEALEKLRLGMYVM---------L-----R---EGS------IA---KNLEALLP 195 (422)
T ss_pred ----HHHHHHH--CCCCCCCCCCCHHHHHHHHHCCCEEE---------E-----E---CCC------CC---CCHHHHHH
T ss_conf ----9999997--59986756487999999986885899---------9-----7---785------52---37999998
Q ss_pred HHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC-------CC
Q ss_conf 9976-994189713888653133215457754454367999999997206999999999824317881889-------88
Q gi|254781012|r 233 AALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIP-------VN 304 (349)
Q Consensus 233 ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~-------~~ 304 (349)
++.. +.-..+++||- .|+..-.+ .| ..--.+-...+...++..-++..|.|||+.|||. +.
T Consensus 196 ~i~~~~~~~~~l~TDd-~~p~~l~~-----~G-----~ld~~vr~Av~~Gl~p~~Ai~maT~NpA~~~gl~d~GsIapGk 264 (422)
T cd01295 196 AITEKNFRRFMFCTDD-VHPDDLLS-----EG-----HLDYIVRRAIEAGIPPEDAIQMATINPAECYGLHDLGAIAPGR 264 (422)
T ss_pred HHHHHCCCCEEEEECC-CCHHHHHH-----CC-----CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 7665255845999289-98323553-----69-----7999999999859999999999875199985997766747876
Q ss_pred CCEEEEEECCCCEEE
Q ss_conf 852899947971784
Q gi|254781012|r 305 TRKISLKRREQPIIF 319 (349)
Q Consensus 305 ~~~i~l~d~~~~~~v 319 (349)
.+||+++|--+.+.+
T Consensus 265 ~ADiVilddl~~~~~ 279 (422)
T cd01295 265 IADIVILDDLENFNI 279 (422)
T ss_pred CCCEEEECCCCCCCC
T ss_conf 879899887666872
No 50
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=99.25 E-value=1.5e-09 Score=78.46 Aligned_cols=197 Identities=19% Similarity=0.167 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHCCCEEEEECCC--HHHHHHHHHHCCCCC
Q ss_conf 068899999999873982220257555554300146765457899-99962069539970578--589999987057332
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILD-PLRNKLPNLKIILEHIT--TSNGIDYVNNATNIA 191 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~-~~~a~~~~~~iHi~HiS--T~~sv~lir~ak~vt 191 (349)
..+.+.++.+.+.+++.++.+|........... ++. +..+... +......+.++.+.|.. +.+.++++++. .++
T Consensus 185 s~e~l~~~~~~a~~~~~~~~~Hl~E~~~e~~~~-~~~-~G~~p~~~l~~~GlL~~~~i~~H~~~l~~~d~~lla~~-g~~ 261 (419)
T PRK08393 185 SLACLKWVSKKANEWNKLVTIHLSETMAEIGQI-REK-YGKSPVVLLDDVGLLNEKLIAAHGVWLSSEDIRMLASA-GVT 261 (419)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH-HHH-CCCCHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHC-CCC
T ss_conf 999999999999975991897402768899999-987-28888999875066787535324553787999999984-993
Q ss_pred EEEECCC-CCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHH
Q ss_conf 0230231-003978861378883113213469999999999999769941897138886531332154577544543679
Q gi|254781012|r 192 GSITVHH-LIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNA 270 (349)
Q Consensus 192 aEVTPHH-L~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~ 270 (349)
.-.||-- +.+. .+. || +++.+..|.- ..||||+++-.... .++..--.
T Consensus 262 v~~cP~Sn~~lg--------~g~-----~p---------~~~~~~~Gv~-v~LGTD~~~~n~~~--------dm~~emr~ 310 (419)
T PRK08393 262 VAHCPASNMKLG--------SGV-----FP---------LRKALDAGVN-VALGTDGAASNNTL--------DMLREMRL 310 (419)
T ss_pred EEECCCHHHHCC--------CCC-----CC---------HHHHHHCCCC-EEEECCCCCCCCHH--------HHHHHHHH
T ss_conf 787723386617--------888-----77---------9999847997-58967877778868--------99999999
Q ss_pred HHHHHHHHHCC---CCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCEEECHHHCC-----C-CCCEEECCC
Q ss_conf 99999997206---999999999824317881889------88852899947971784711226-----7-777146579
Q gi|254781012|r 271 LNCLAQIFEEE---NKLENLESFVSINGATWYGIP------VNTRKISLKRREQPIIFDEKITT-----S-TGSITIFNP 335 (349)
Q Consensus 271 ~~~~~~~~~~~---~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~~v~~~~~~-----s-k~~~tpF~~ 335 (349)
..++..+.... .+-+++.++.+.|+||.+|+. +.++||+++|.+.+...+...+. + .+.+ -+
T Consensus 311 a~l~~~~~~~~~~~~~~~~vl~maT~~gA~alg~~~Gsle~Gk~ADlvi~d~~~~~~~p~~dp~~~lv~~a~~~~--V~- 387 (419)
T PRK08393 311 ASLLQKVHHLDPAIVKSEEIFRMATVNGAKALGLKAGIIKEGYLADIAIINLRRPHLLPLNSPISHLIYSARGGD--VD- 387 (419)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCC--CC-
T ss_conf 999978745898878999999999999999858988736888707899994999977886597989764589998--78-
Q ss_pred CEEECCEEEEECC
Q ss_conf 7698338887416
Q gi|254781012|r 336 IFPLYWEVMLHDN 348 (349)
Q Consensus 336 g~~l~w~V~~~~~ 348 (349)
.-=+.|+|+++|.
T Consensus 388 ~V~V~G~~v~~~g 400 (419)
T PRK08393 388 TLIVDGEIVMLDG 400 (419)
T ss_pred EEEECCEEEEECC
T ss_conf 9999999999999
No 51
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=99.25 E-value=7.5e-10 Score=80.37 Aligned_cols=165 Identities=13% Similarity=0.057 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEE--EEECCCHHHHHHHHHHCCCCCE
Q ss_conf 06889999999987398222025755555430014676545789999962069539--9705785899999870573320
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKI--ILEHITTSNGIDYVNNATNIAG 192 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~i--Hi~HiST~~sv~lir~ak~vta 192 (349)
..+.+..+++.+.+.+.++..|+... +.. ..+...|.+. |..+++ .+.++++++.. +
T Consensus 158 ~~~~~~~~~~~a~~~g~~v~~H~~~~---------~~~--------~~~~~~G~~~i~H~~~~~-~~~~~~~~~~g---~ 216 (342)
T cd01299 158 SEEELRAIVDEAHKAGLYVAAHAYGA---------EAI--------RRAIRAGVDTIEHGFLID-DETIELMKEKG---I 216 (342)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCCH---------HHH--------HHHHHHCCCHHHHHCCCC-HHHHHHHHHCC---C
T ss_conf 99999999999998199467741663---------899--------999991996267650488-99999999779---1
Q ss_pred EEECCCCCCCHHHHH--CCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHH
Q ss_conf 230231003978861--378883113213469999999999999769941897138886531332154577544543679
Q gi|254781012|r 193 SITVHHLIINRNAIF--HDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNA 270 (349)
Q Consensus 193 EVTPHHL~lt~~d~~--~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~ 270 (349)
-++|........... .....+...++.......-...+...+..|.. ..+|||..+..... ...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aGv~-v~lgtD~~~~~~~~-------------~~~ 282 (342)
T cd01299 217 FLVPTLATYEALAAEGAAPGLPADSAEKVALVLEAGRDALRRAHKAGVK-IAFGTDAGFPVPPH-------------GWN 282 (342)
T ss_pred EEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEEECCCCCCCCCH-------------HHH
T ss_conf 8945647878877502445776678888887666457999999977994-99867888887726-------------799
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf 99999997206999999999824317881889--------888528999479
Q gi|254781012|r 271 LNCLAQIFEEENKLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 271 ~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
...+........+..+.+++.|.||||.+||. +..+||+++|-+
T Consensus 283 ~~~~~~~~~~gl~~~eal~~aT~n~A~~lgl~~~~GsL~~Gk~ADlVv~D~d 334 (342)
T cd01299 283 ARELELLVKAGGTPAEALRAATANAAELLGLSDELGVIEAGKLADLLVVDGD 334 (342)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEECCC
T ss_conf 9999999983999999999999999999689999770698985448998898
No 52
>PRK06380 metal-dependent hydrolase; Provisional
Probab=99.25 E-value=7.7e-09 Score=74.11 Aligned_cols=199 Identities=13% Similarity=0.136 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHCCCEEEEECC--CHHHHHHHHHHCCC
Q ss_conf 1006889999999987398222025755555430014676545789-99996206953997057--85899999870573
Q gi|254781012|r 113 IRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKIL-DPLRNKLPNLKIILEHI--TTSNGIDYVNNATN 189 (349)
Q Consensus 113 v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l-~~~~a~~~~~~iHi~Hi--ST~~sv~lir~ak~ 189 (349)
....+.+.++++.+.+.+.++.+|.-..... .......+..+.. -+......+.++.+.|. .+.+.++++++. .
T Consensus 182 ~~s~e~~~~~~~lA~~~~~~~~~H~~E~~~e--~~~~~~~~G~~pv~~l~~~glL~~~~~~~H~~~~~~~e~~~la~~-g 258 (418)
T PRK06380 182 VASDETYMRALDLAEKYNTIMHMHLSETRKE--VYDTVKKYGERPIEHLNKIGFLSDRVIAAHCVWATYHEIKLLSKN-G 258 (418)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCCCHHH--HHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHC-C
T ss_conf 7999999999999997298378640020678--999999959988999985488888716655532898999999975-9
Q ss_pred CCEEEECC-CCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHH
Q ss_conf 32023023-10039788613788831132134699999999999997699418971388865313321545775445436
Q gi|254781012|r 190 IAGSITVH-HLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTAR 268 (349)
Q Consensus 190 vtaEVTPH-HL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~ 268 (349)
+..-.||. .+.| ...+ .||++ +.+..|-. ..||||-++-. ....++..
T Consensus 259 ~~v~~~P~sn~~l-------~~gg-----~~pi~---------~~~~~Gv~-v~lGTD~~~s~--------~~~dm~~~- 307 (418)
T PRK06380 259 VNVSWNSVSNFKL-------ATGG-----NPPIP---------EMLNNNVN-VTIGTDSNGSN--------NSLDMFQA- 307 (418)
T ss_pred CCEEECCHHHHHC-------CCCC-----CCCHH---------HHHHCCCC-EEEECCCCCCC--------CCHHHHHH-
T ss_conf 8368783467650-------5788-----87699---------99976990-89916865556--------51899999-
Q ss_pred HHHHHHHHHHH----CCCCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCEEECHH-------HCCC-CCCE
Q ss_conf 79999999972----06999999999824317881889------88852899947971784711-------2267-7771
Q gi|254781012|r 269 NALNCLAQIFE----EENKLENLESFVSINGATWYGIP------VNTRKISLKRREQPIIFDEK-------ITTS-TGSI 330 (349)
Q Consensus 269 ~~~~~~~~~~~----~~~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~~v~~~-------~~~s-k~~~ 330 (349)
.-+..+..-.. ...+..++.++.+.|+||.+|+. +.++||+++|.+.+...|-. ..++ .+.+
T Consensus 308 mr~~~l~~~~~~~d~~~~~~~~~l~mAT~~gAkaLg~~~Gsie~Gk~ADlvviD~~~p~~~P~~~~d~~~~lV~~a~~~~ 387 (418)
T PRK06380 308 MKFSALSVKNERWDASIIKSQDILDMATLNAASALNLNAGSIEVGKIADLVILDARAPNMIPTNEANFVKNIVYSGNPSN 387 (418)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 99999998763479876799999999999999984999975687763789999189987778886698999753699998
Q ss_pred EECCCCEEECCEEEEECC
Q ss_conf 465797698338887416
Q gi|254781012|r 331 TIFNPIFPLYWEVMLHDN 348 (349)
Q Consensus 331 tpF~~g~~l~w~V~~~~~ 348 (349)
. + --=+.||++++|.
T Consensus 388 V--~-~V~V~G~~v~~dg 402 (418)
T PRK06380 388 V--D-YVIIDGKILKENG 402 (418)
T ss_pred C--C-EEEECCEEEEECC
T ss_conf 5--9-9999999999999
No 53
>PRK09356 imidazolonepropionase; Validated
Probab=99.24 E-value=3e-09 Score=76.66 Aligned_cols=156 Identities=17% Similarity=0.095 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EEEECCCHHHHHHHHHHCCC
Q ss_conf 4100688999999998739822202575555543001467654578999996206953--99705785899999870573
Q gi|254781012|r 112 GIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLK--IILEHITTSNGIDYVNNATN 189 (349)
Q Consensus 112 ~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~--iHi~HiST~~sv~lir~ak~ 189 (349)
+....+.+.+.++.+.+.|.++..|++....... . . ++...+.. -|..|++ .+.++++++..
T Consensus 216 ~~~~~e~~~~~~~~a~~~g~~v~~Ha~~~~~~~~-----~-----~----l~~~~g~~~~~H~~~~~-~e~i~~la~~g- 279 (401)
T PRK09356 216 IAFSVEQSERVFEAAKALGLPVKLHAEQLSNLGG-----A-----E----LAARYGALSADHLEYLD-EAGIAAMAEAG- 279 (401)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEHHHHHCCCCH-----H-----H----HHHHHCCCCHHHHHHCC-HHHHHHHHHCC-
T ss_conf 7548999999999999869972771764444547-----9-----9----99980997415887618-99999998649-
Q ss_pred CCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHH
Q ss_conf 32023023100397886137888311321346999999999999976994189713888653133215457754454367
Q gi|254781012|r 190 IAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARN 269 (349)
Q Consensus 190 vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~ 269 (349)
+..-.||---+ .+.+. ..||++ +..+.|-. ..||||+.|.+. .......
T Consensus 280 ~~~~~~P~s~~----~l~~~-------~~~~~~---------~l~~aGv~-v~lGTD~~pg~~----------~~~~~~~ 328 (401)
T PRK09356 280 TVAVLLPGAFY----FLRET-------QYPPAR---------LLRDAGVP-VALATDFNPGTS----------PTTSLLL 328 (401)
T ss_pred CEEEECCCHHH----HHCCC-------CCCHHH---------HHHHCCCC-EEEEECCCCCCC----------CCCCHHH
T ss_conf 70798850476----74577-------664499---------99978996-599746987668----------3211999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECCCC
Q ss_conf 999999997206999999999824317881889--------88852899947971
Q gi|254781012|r 270 ALNCLAQIFEEENKLENLESFVSINGATWYGIP--------VNTRKISLKRREQP 316 (349)
Q Consensus 270 ~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~~~ 316 (349)
.+.+ .+...+.+..+..+..+.||||.+|+. +..+||+++|.+.+
T Consensus 329 ~~~~--a~~~~glt~~eaL~~aT~~~Aralg~~d~iGsie~Gk~ADlvv~D~~~~ 381 (401)
T PRK09356 329 MMNM--ACTLFRLTPEEALAGVTRNAARALGRQDRHGSLEVGKKADLVIWDAENP 381 (401)
T ss_pred HHHH--HHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCH
T ss_conf 9999--9997499999999999999999978999961178888446799958898
No 54
>cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.
Probab=99.18 E-value=7.2e-09 Score=74.27 Aligned_cols=171 Identities=17% Similarity=0.155 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHCCCC
Q ss_conf 1006889999999987398222025755555430014676545789999962069539970578--58999998705733
Q gi|254781012|r 113 IRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHIT--TSNGIDYVNNATNI 190 (349)
Q Consensus 113 v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiS--T~~sv~lir~ak~v 190 (349)
..+.+.+.+.++.+.+.|.++.+||.-. ...+.-....+.. .......+.|..|.|.. +.+.++.+++ ..+
T Consensus 291 ~~~~e~~~~~~~~a~~~g~~v~~Ha~gd----~~~~~~l~~~e~~--~~~~~~~~~r~~i~H~~~~~~~~~~~~~~-~g~ 363 (479)
T cd01300 291 LISPEELEELVRAADEAGLQVAIHAIGD----RAVDTVLDALEAA--LKDNPRADHRHRIEHAQLVSPDDIPRFAK-LGV 363 (479)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCC----HHHHHHHHHHHHH--HHHCCCCCCCEEEHHHCCCCHHHHHHHHH-CCC
T ss_conf 5699999999999998398367852362----7999999999999--98668877750330011379999999997-397
Q ss_pred CEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHH
Q ss_conf 20230231003978861378883113213469999999999999769941897138886531332154577544543679
Q gi|254781012|r 191 AGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNA 270 (349)
Q Consensus 191 taEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~ 270 (349)
++.++|.|+...........+ ++-| ......+.+.+..|.. ..+|||+..-+.. + +.....+
T Consensus 364 ~~~~~p~~~~~~~~~~~~~~~-------g~~~-~~~~~p~~~l~~aGv~-v~lgtD~~~~~~~----~-----~~~~~~a 425 (479)
T cd01300 364 IASVQPNHLYSDGDAAEDRRL-------GEER-AKRSYPFRSLLDAGVP-VALGSDAPVAPPD----P-----LLGIWAA 425 (479)
T ss_pred EEEECHHHHHCCCHHHHHHHH-------HHHH-HHCCHHHHHHHHCCCE-EEEECCCCCCCCC----H-----HHHHHHH
T ss_conf 599853776434167665010-------6878-7523799999988995-9982799998878----8-----9999999
Q ss_pred HHHH------HHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCEE
Q ss_conf 9999------9997206999999999824317881889888528
Q gi|254781012|r 271 LNCL------AQIFEEENKLENLESFVSINGATWYGIPVNTRKI 308 (349)
Q Consensus 271 ~~~~------~~~~~~~~~L~~l~~~~s~npa~~~gl~~~~~~i 308 (349)
+... ...-....+..+..+.++.||||.+|+....|.|
T Consensus 426 v~~~~~~~~~~~~~~~~lt~~eaL~~aT~~~A~~lg~e~~iGsL 469 (479)
T cd01300 426 VTRKTPGGGVLGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSL 469 (479)
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 84568567746584579999999999999999996878994421
No 55
>PRK08204 hypothetical protein; Provisional
Probab=99.15 E-value=5.5e-09 Score=75.00 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHCCCCC
Q ss_conf 00688999999998739822202575555543001467654578999996206953997057--8589999987057332
Q gi|254781012|r 114 RNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHI--TTSNGIDYVNNATNIA 191 (349)
Q Consensus 114 ~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~Hi--ST~~sv~lir~ak~vt 191 (349)
...+.+...++.+.+++.++.+|.......... ...+ .+......+.++.+.|. -+.+.++++++. .++
T Consensus 200 ~~~e~~~~~~~~a~~~g~~~~~H~~~~~~~~~~-----~~~~---~l~~~g~l~~~~~~~H~~~~~~~e~~~la~~-g~~ 270 (451)
T PRK08204 200 SSWEVVRADFRLARELGLPASMHIGFGPWGATP-----RGVE---QLHDAGLLGPDLNIVHCNAISDDELRLLADS-GAS 270 (451)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-----CHHH---HHHHCCCCCCCEEEEEECCCCHHHHHHHHHH-CCC
T ss_conf 899999999999996799488822366445688-----6899---9997698789908995126888999998873-996
Q ss_pred EEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH--HCCCC---CCCCCC
Q ss_conf 0230231003978861378883113213469999999999999769941897138886531332--15457---754454
Q gi|254781012|r 192 GSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSK--ESSCG---CAGIYT 266 (349)
Q Consensus 192 aEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK--~~~~~---~~g~~~ 266 (349)
.-.||.--+ .... + -||++ +.+..|.. ..+|||.++....+= +...+ .....+
T Consensus 271 v~~~p~s~~-----~~~~--g-----~~~~~---------~~~~~Gv~-v~lgtD~~~~~~~d~~~~~r~a~~~~~~~~~ 328 (451)
T PRK08204 271 FSVTPEIEM-----MMGH--G-----YPVTG---------RLLKHGVR-PSLGVDVVTSTGGDMFTQMRFALQAERALDN 328 (451)
T ss_pred EEECCHHHH-----HHCC--C-----CCCHH---------HHHHCCCC-EEEECCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 796740576-----5247--9-----86099---------99974996-6664675566783799999999986666501
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECCCCEEECHHHCCCCCCEEECCC---
Q ss_conf 367999999997206999999999824317881889--------888528999479717847112267777146579---
Q gi|254781012|r 267 ARNALNCLAQIFEEENKLENLESFVSINGATWYGIP--------VNTRKISLKRREQPIIFDEKITTSTGSITIFNP--- 335 (349)
Q Consensus 267 ~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~--- 335 (349)
................+..+..+..+.|+||.+|+. +..+||+++|.+.+-..+...+.+. -.|.+
T Consensus 329 ~~~~~~~~~~~~~~~l~~~eal~~aT~~gA~alG~~d~iGsle~Gk~ADlVvlD~~~~~~~p~~~~~~~---lv~~~~~~ 405 (451)
T PRK08204 329 AELLREGIMPPPTLTLSARQVLEWATIEGARALGLEDRIGSLTPGKEADIVLIDATDLNLAPVHDPVGA---VVQSAHPG 405 (451)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHH---HHHCCCCC
T ss_conf 145542022255568899999999999999980998876647877528899993999865787797899---98278878
Q ss_pred ---CEEECCEEEEECC
Q ss_conf ---7698338887416
Q gi|254781012|r 336 ---IFPLYWEVMLHDN 348 (349)
Q Consensus 336 ---g~~l~w~V~~~~~ 348 (349)
---+.|+++++|.
T Consensus 406 ~v~~v~v~G~~~~~~g 421 (451)
T PRK08204 406 NVDSVFVAGRAVKRNG 421 (451)
T ss_pred CCCEEEECCEEEEECC
T ss_conf 7678999999999999
No 56
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=99.07 E-value=1.7e-07 Score=65.71 Aligned_cols=195 Identities=13% Similarity=0.077 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHCCCEE---EEECCCHHHHHHHHHHCCC
Q ss_conf 0068899999999873982220257555554300146765457899-99962069539---9705785899999870573
Q gi|254781012|r 114 RNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILD-PLRNKLPNLKI---ILEHITTSNGIDYVNNATN 189 (349)
Q Consensus 114 ~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~-~~~a~~~~~~i---Hi~HiST~~sv~lir~ak~ 189 (349)
...+.+.++.+.+++++.++.+|.-......... .+ .+..+..+ +......+.++ |-.|+|..+.++++++..
T Consensus 218 ~s~e~l~~~~~~A~e~g~~i~~Hl~E~~~E~~~~-~~-~~G~~pv~~l~~lGlL~~~~~~aH~v~ltde~di~lla~~g- 294 (480)
T PRK06151 218 CTVDLLRRTAAAARELGVPVRLHCCQSVIEVETV-RR-LHGTTPLEWLHSVGLLSPRLIIPHGTYISGEPDLALYAEHG- 294 (480)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH-HH-HHCCCHHHHHHHCCCCCCCEEEEEEEEECCHHHHHHHHHCC-
T ss_conf 8999999999999976996898603671589999-99-85999899999708766764788875408769999998639-
Q ss_pred CCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHH
Q ss_conf 32023023100397886137888311321346999999999999976994189713888653133215457754454367
Q gi|254781012|r 190 IAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARN 269 (349)
Q Consensus 190 vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~ 269 (349)
+..-.||- .....+ .+ -||++ +.+..|-. -.||||.+|...-+ ..-.
T Consensus 295 ~~vah~P~------Sn~~lg-~g-----~~pv~---------~~~~~Gv~-v~LGTD~~~~dm~~-----------~mr~ 341 (480)
T PRK06151 295 VSIVHCPL------VSARRG-SA-----LNSFG---------RYREAGIN-LAMGTDTWPPDMLM-----------NMRV 341 (480)
T ss_pred CEEEECHH------HHHHCC-CC-----CCCHH---------HHHHCCCC-EEECCCCCCCCHHH-----------HHHH
T ss_conf 75998857------787448-99-----86599---------99855996-66616999987799-----------9999
Q ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHCCHHHCCCC-------CCCCEEEEEECCCCEEECHHHCC-----C-CCCEEEC
Q ss_conf 99999999720---6999999999824317881889-------88852899947971784711226-----7-7771465
Q gi|254781012|r 270 ALNCLAQIFEE---ENKLENLESFVSINGATWYGIP-------VNTRKISLKRREQPIIFDEKITT-----S-TGSITIF 333 (349)
Q Consensus 270 ~~~~~~~~~~~---~~~L~~l~~~~s~npa~~~gl~-------~~~~~i~l~d~~~~~~v~~~~~~-----s-k~~~tpF 333 (349)
++ ++..+..+ ..+-.++.++.+.|+||.+|++ +.++||+++|.+.+-..+..... + .+++.
T Consensus 342 a~-~~~r~~~~~~~~~~~~~~l~mAT~~GArALg~~diGsLe~Gk~ADlvi~d~~~~~~~P~~dp~~~lV~~a~~~~V-- 418 (480)
T PRK06151 342 GL-YLGRVMEGDLDAASSADLFDAATLGGARALGRTDLGRLAPGARADIAVFNLDDLHLGPSWDPIRTLVLGGSGDDV-- 418 (480)
T ss_pred HH-HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCC--
T ss_conf 99-999997399998999999999999999982898887658877378899959998767876968998774887866--
Q ss_pred CCCEEECCEEEEECC
Q ss_conf 797698338887416
Q gi|254781012|r 334 NPIFPLYWEVMLHDN 348 (349)
Q Consensus 334 ~~g~~l~w~V~~~~~ 348 (349)
+ ---+.|+|+++|.
T Consensus 419 ~-~V~VdG~~v~~dg 432 (480)
T PRK06151 419 R-AVFVDGRVVMEDG 432 (480)
T ss_pred E-EEEECCEEEEECC
T ss_conf 2-9999999999999
No 57
>PRK07583 cytosine deaminase; Validated
Probab=99.06 E-value=2.8e-07 Score=64.42 Aligned_cols=276 Identities=12% Similarity=0.055 Sum_probs=140.6
Q ss_pred CEEEECCCCEEEEECCC-----------HHH----H---H-----------------HHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 65586466423750881-----------788----9---8-----------------74987418873999838951489
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD-----------GEI----L---K-----------------TVLRDTAKNFRRALVMPNIDPPI 46 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re-----------g~~----~---~-----------------~t~aa~aGG~TtV~~MPNT~Ppi 46 (349)
.+|++|+++|+|+||-. |.+ . . +-.-+++-|+|.|=...|..|+.
T Consensus 70 G~LvlPgfvd~H~HLDK~~~~~r~pn~~gtl~~ai~a~~~~~~~~~t~edv~~Ra~~~l~~a~a~Gtt~iRTHvDv~~~~ 149 (437)
T PRK07583 70 GRMVWPCFVDMHTHLDKGHIWPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTAAIRTHLDSFGPQ 149 (437)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99879776673268778984787878898778999988776432388899999999999999970874799984255884
Q ss_pred CC--HHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHH-CCCEEEHHHCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf 89--8999999999998386884699501345278999889987440-68721022104551002565410068899999
Q gi|254781012|r 47 IT--VDDACAYRQRILNALPPEYDFSPLMTIYLTETTDPDDVEKGFT-SQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVL 123 (349)
Q Consensus 47 ~t--~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~l 123 (349)
.. .+.+.+.+++..... .......+...+......+.+.+... .+.+. ++..... ..-...+..+|
T Consensus 150 ~~~~~e~~~~lr~~~~~~i--~lq~VA~~p~~~~~~~~~~~L~~~~~~~g~vv------GGv~~~~---~d~~~~l~~vf 218 (437)
T PRK07583 150 AAISWEVFAELREAWAGRI--TLQAVSLVPLDYYLTDAGERLADLVAEAGGLL------GGVTYMN---PDLDAQLDRLF 218 (437)
T ss_pred CHHHHHHHHHHHHHHCCCC--EEEEEEEECCCCCCCCHHHHHHHHHHHHCCEE------CCCCCCC---CCHHHHHHHHH
T ss_conf 0458999999999832660--45456420753347827999999999719847------3878988---57999999999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH------H---HHHHHHHHCCCCCEEE
Q ss_conf 999873982220257555554300146765457899999620695399705785------8---9999987057332023
Q gi|254781012|r 124 ERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITT------S---NGIDYVNNATNIAGSI 194 (349)
Q Consensus 124 e~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST------~---~sv~lir~ak~vtaEV 194 (349)
+.+.++|..+-+|+-+... .....++...+...+...+.|+-+.|.++ . +-+++++++. |+.-.
T Consensus 219 ~lA~~~g~~vDiHlde~~d------~~~~~l~~la~~t~~~g~~grVt~sH~~sL~~~~~~~~~~~~~~lA~ag-i~vvs 291 (437)
T PRK07583 219 ALAAERGLDLDLHVDETGD------PASRTLKAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQETLALVAEAG-IAIVS 291 (437)
T ss_pred HHHHHHCCCCCCCCCCCCC------HHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCC-CCEEE
T ss_conf 9999809995323578887------1799999999999980999865520234553299999999999999839-94897
Q ss_pred ECC-CCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 023-1003978861378883113213469999999999999769941897138886531332154577544543679999
Q gi|254781012|r 195 TVH-HLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNC 273 (349)
Q Consensus 195 TPH-HL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~ 273 (349)
+|. -|+|.. +..+ -.|..|.-.-...|.+ .|. ...+|||.- ..+|.+.|-......+.+
T Consensus 292 lP~~nl~Lq~------R~~~---~~P~~Rgv~pv~eL~~---aGV-~Valg~Dni-------~Dpw~P~G~gDmLe~~~~ 351 (437)
T PRK07583 292 LPMCNLYLQD------RQPG---RTPRWRGVTLVHELKA---AGI-PVAFASDNC-------RDPFYAYGDHDMLEVFRE 351 (437)
T ss_pred CCCCCEECCC------CCCC---CCCCCCCCCCHHHHHH---CCC-EEEEECCCC-------CCCCCCCCCCCHHHHHHH
T ss_conf 5652200036------6777---7887688778699997---898-189937988-------788776889889999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCHHHCCCC-------CCCCEEEEEECCC
Q ss_conf 99997206999999999824317881889-------8885289994797
Q gi|254781012|r 274 LAQIFEEENKLENLESFVSINGATWYGIP-------VNTRKISLKRREQ 315 (349)
Q Consensus 274 ~~~~~~~~~~L~~l~~~~s~npa~~~gl~-------~~~~~i~l~d~~~ 315 (349)
...+..-.-+++....+.+.|||+.+|++ +..+|++++|-+-
T Consensus 352 a~~~~~ld~~~~~al~~iT~~~A~~lgl~~~G~i~~G~~ADlVl~da~~ 400 (437)
T PRK07583 352 AVRILHLDHPYDDWPAAVTTTPADIMGLPDLGRIAVGAPADLVIFKARS 400 (437)
T ss_pred HHHHHCCCCCHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 9999744811999999854239987599766776899954289995899
No 58
>PRK07572 cytosine deaminase; Validated
Probab=99.04 E-value=9.3e-07 Score=61.21 Aligned_cols=279 Identities=13% Similarity=0.134 Sum_probs=139.9
Q ss_pred CEEEECCCCEEEEECCC------------H-------------------HHHH----HHHHHHCCCCEEEEECCCC-CCC
Q ss_conf 65586466423750881------------7-------------------8898----7498741887399983895-148
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------------G-------------------EILK----TVLRDTAKNFRRALVMPNI-DPP 45 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------------g-------------------~~~~----~t~aa~aGG~TtV~~MPNT-~Pp 45 (349)
.+|++|+++|.|+|+=. | ++.. .-..+++-|.|.+-.-=++ .|-
T Consensus 45 G~LvlPgfVd~H~HLDkt~~~g~p~~~~~gtl~~~i~~~~~~~~~~t~edv~~Ra~~~l~~a~a~Gtt~iRtHvdv~d~~ 124 (425)
T PRK07572 45 GRLVSPPFVDPHFHMDATLSYGLPRVNASGTLLEGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPR 124 (425)
T ss_pred CCEECCCCCCCEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 98768787760058545623479887888788999999997532078778999999999999975965255136257973
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC-CHHHHHHHHHCCC-EEEHHHCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf 989899999999999838688469950134527899-9889987440687-21022104551002565410068899999
Q gi|254781012|r 46 IITVDDACAYRQRILNALPPEYDFSPLMTIYLTETT-DPDDVEKGFTSQL-VQAIKLYFAGSTTNSHHGIRNIDRVMPVL 123 (349)
Q Consensus 46 i~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~-~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~~v~~~~~~~~~l 123 (349)
....+.+.+.+++.......+ +...+..++.... ..+.+.++...+. .. +|..-+..........+..+|
T Consensus 125 l~~~ea~~~~r~~~~~~~~lq--iVAfpq~g~~~~~~~~~ll~~al~~Gad~v------GG~p~~~~t~~d~~~~l~~~f 196 (425)
T PRK07572 125 LLAVEALLEVRERVAPYLDLQ--LVAFPQDGVLRSPGALANLKRALDMGVDVV------GGIPHFERTMADGAASVRLLC 196 (425)
T ss_pred HHHHHHHHHHHHHHHHHCCCC--EEECCCCCCCCCCCHHHHHHHHHHCCCCEE------ECCCCCCCCCHHHHHHHHHHH
T ss_conf 138999999999724322120--465266433358458999999996289788------454687666143899999999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHH---------HHHHHHHCCCCCEEE
Q ss_conf 99987398222025755555430014676545789999962069539970578589---------999987057332023
Q gi|254781012|r 124 ERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSN---------GIDYVNNATNIAGSI 194 (349)
Q Consensus 124 e~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~---------sv~lir~ak~vtaEV 194 (349)
+.+.++|++|-+|+.+... .. ...++.......+.-.+.|+-+.|.++-. .+++++++ .++.=.
T Consensus 197 ~lA~~~g~~iDiHldE~~d---~~---~~~l~~la~~t~~~G~~grVt~sH~~~L~~~~~~~~~~~i~~lAea-gi~vv~ 269 (425)
T PRK07572 197 EIAAERGLRVDMHCDESDD---PL---SRHIETLAAETQRLGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEA-GVAAIA 269 (425)
T ss_pred HHHHHCCCCEEEEECCCCC---HH---HHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHC-CCCEEE
T ss_conf 9999749975873468777---15---7899999999998289885561363111349999999999999982-995552
Q ss_pred ECC-CCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCC-HHHHHH
Q ss_conf 023-100397886137888311321346999999999999976994189713888653133215457754454-367999
Q gi|254781012|r 195 TVH-HLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYT-ARNALN 272 (349)
Q Consensus 195 TPH-HL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~-~~~~~~ 272 (349)
||. -|+|.. +.+ .-|.-|.-.-...|+++ |. ...+|||.. ..+|.+.|-.. ++.+.
T Consensus 270 ~P~~Nl~L~g------R~~----~~p~~RGvtpv~eL~~a---GV-~ValGtDnv-------~D~~~p~G~~DmLe~a~- 327 (425)
T PRK07572 270 NPLINITLQG------RHD----TYPKRRGMTRVPELMAA---GI-NVAFGHDCV-------MDPWYSLGSGDMLEVAH- 327 (425)
T ss_pred CCCCCCEECC------CCC----CCCCCCCCCCHHHHHHC---CC-EEEEECCCC-------CCCCCCCCCCCHHHHHH-
T ss_conf 5655523036------678----88988888899999976---98-599906888-------78775678876899999-
Q ss_pred HHHHHHHC--CCCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCE
Q ss_conf 99999720--6999999999824317881889------888528999479717
Q gi|254781012|r 273 CLAQIFEE--ENKLENLESFVSINGATWYGIP------VNTRKISLKRREQPI 317 (349)
Q Consensus 273 ~~~~~~~~--~~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~ 317 (349)
+...+..- .-.+....++.|.|||+++||+ +.++|++++|-+.+.
T Consensus 328 l~~~~~~l~~~~~~~~~~~~vT~~~A~~lGl~~~gl~~G~~ADlVl~da~~~~ 380 (425)
T PRK07572 328 MGLHVAQMTGQDAMRACFDAVTVNPARIMGLEGYGLAPGCRADLVLLQARDPV 380 (425)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHH
T ss_conf 99998746888999999999733788851998658489996568999698989
No 59
>PRK09230 cytosine deaminase; Provisional
Probab=99.04 E-value=4e-07 Score=63.48 Aligned_cols=279 Identities=9% Similarity=0.120 Sum_probs=150.7
Q ss_pred CEEEECCCCEEEEECCC------------H-------------------HHHH----HHHHHHCCCCEEEEECCCC-CCC
Q ss_conf 65586466423750881------------7-------------------8898----7498741887399983895-148
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD------------G-------------------EILK----TVLRDTAKNFRRALVMPNI-DPP 45 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re------------g-------------------~~~~----~t~aa~aGG~TtV~~MPNT-~Pp 45 (349)
.+|++|+++|+|+|+-. | |... .-.-+++-|+|.+=.+=|. .|.
T Consensus 50 G~LvlP~fvd~H~HLDKt~~~~~p~~n~~gtl~~ai~~~~~~k~~~t~edv~~Ra~~~l~~~ia~Gtt~iRtHvDv~dp~ 129 (426)
T PRK09230 50 GGLAIPPFIEPHIHLDTTQTAGEPNWNQSGTLFEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDPT 129 (426)
T ss_pred CCEECCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHEECCCCCCCCH
T ss_conf 98747786661033232473799887888588999999998763599899999999999999981824401334537703
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC-CCHHHHHHHHHCCC-EEEHHHCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf 98989999999999983868846995013452789-99889987440687-21022104551002565410068899999
Q gi|254781012|r 46 IITVDDACAYRQRILNALPPEYDFSPLMTIYLTET-TDPDDVEKGFTSQL-VQAIKLYFAGSTTNSHHGIRNIDRVMPVL 123 (349)
Q Consensus 46 i~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~-~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~~v~~~~~~~~~l 123 (349)
..+.+.+.+.+++...... ..+...+-.++... ...+.+.++...+. +.+.-.+. .-..-.....+..+|
T Consensus 130 l~~leal~~~re~~~~~id--lQiVAFPQ~Gl~~~~~~~~Ll~eAl~~GadvvGGvp~~------~~~~~~~~~~L~~vf 201 (426)
T PRK09230 130 LTALKAMLEVKEEVAPWVD--LQIVAFPQEGILSYPNGEALLEEALRLGADVVGAIPHF------EFTREYGVESLHKAF 201 (426)
T ss_pred HHHHHHHHHHHHHHHCCCE--EEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEECCCCC------CCCCHHHHHHHHHHH
T ss_conf 5169999999998435201--68883036542468877999999998089888478997------778045799999999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH---------HHHHHHCCCCCEEE
Q ss_conf 999873982220257555554300146765457899999620695399705785899---------99987057332023
Q gi|254781012|r 124 ERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNG---------IDYVNNATNIAGSI 194 (349)
Q Consensus 124 e~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~s---------v~lir~ak~vtaEV 194 (349)
+.+.++|..|-+|..+.... ....+....+...+...+.|+-+.|.++-.. ++.++++ .|+.-.
T Consensus 202 ~LA~~~~~~vDiHldE~~d~------~~~~l~~ia~~t~~~g~~grVt~sH~~sL~~~~~~~~~~~~~~laea-gi~vvs 274 (426)
T PRK09230 202 ALAQKYDRLIDVHCDEIDDE------QSRFVETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMS-GINFVA 274 (426)
T ss_pred HHHHHCCCCEEEEECCCCCC------HHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCHHHHHHHHHHHHHC-CCCEEE
T ss_conf 99998299858877788883------37899999999998389986563000545339999999999999982-985785
Q ss_pred ECC-CCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 023-1003978861378883113213469999999999999769941897138886531332154577544543679999
Q gi|254781012|r 195 TVH-HLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNC 273 (349)
Q Consensus 195 TPH-HL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~ 273 (349)
+|+ -|+|. ++.+ ..|+-|.-.=...|.++ | +...+|||-- ..+|.+.|-....-...+
T Consensus 275 lP~tNl~Lq------gR~~----~~p~~Rgvtpv~eL~~a---G-V~V~~GsDnv-------rD~w~P~G~~D~Le~a~l 333 (426)
T PRK09230 275 NPLVNIHLQ------GRFD----TYPKRRGITRVKEMLEA---G-INVCFGHDDV-------FDPWYPLGTANMLQVLHM 333 (426)
T ss_pred CCCCCCCCC------CCCC----CCCCCCCCCCHHHHHHC---C-CEEEEECCCC-------CCCCCCCCCCCHHHHHHH
T ss_conf 254332135------6567----78888887789999976---9-8699807888-------778748999889999999
Q ss_pred HHHHH--HCCCCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCC
Q ss_conf 99997--206999999999824317881889------88852899947971
Q gi|254781012|r 274 LAQIF--EEENKLENLESFVSINGATWYGIP------VNTRKISLKRREQP 316 (349)
Q Consensus 274 ~~~~~--~~~~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~ 316 (349)
...+. .....|+...++.|.+||+++||+ +.++|++++|-...
T Consensus 334 ~~~~~~l~~~~~l~~~~~~vT~~~A~~lgl~d~gi~vG~~ADlVl~~a~~~ 384 (426)
T PRK09230 334 GLHVCQLMGYGQINDGLNLITTHSARTLNLQDYGIEVGNPANLIILPAENG 384 (426)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH
T ss_conf 999970488778999999974258886199875767899555899908998
No 60
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=99.03 E-value=6.7e-08 Score=68.30 Aligned_cols=203 Identities=15% Similarity=0.133 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHHCCC--CEECCCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHCCCEEEEECCC------------
Q ss_conf 1006889999999987398--2220257555554300146765457899--99962069539970578------------
Q gi|254781012|r 113 IRNIDRVMPVLERMETIGM--PLCIHGEILNQDIDIFDRELMFIDKILD--PLRNKLPNLKIILEHIT------------ 176 (349)
Q Consensus 113 v~~~~~~~~~le~~~~~~~--~i~~H~E~~~~~~~~~~~E~~~~~~~l~--~~~a~~~~~~iHi~HiS------------ 176 (349)
+...+.+....+...++++ ++-+||-+-..-.++. ..+++... -+..+.-.-.+|+.|+.
T Consensus 205 vtpr~Ii~~L~~a~e~LglPH~lHvH~nNLG~PGN~~----ttl~T~~~~eg~~~~~r~q~~HltHvQFhsYgg~~~~~f 280 (541)
T cd01304 205 ITPREILKGLAEANEELGLPHSIHVHCNNLGVPGNYE----TTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDF 280 (541)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEHHHHHCCCCCCHH----HHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 6899999999999986599960320123179998726----677644420454456445511342477663267888771
Q ss_pred ---HHHHHHHHHHCCCCCEEE--------E------C--CCCC------CCHHHHH-CCCCCCCEEECCC-CCCHHHHHH
Q ss_conf ---589999987057332023--------0------2--3100------3978861-3788831132134-699999999
Q gi|254781012|r 177 ---TSNGIDYVNNATNIAGSI--------T------V--HHLI------INRNAIF-HDGLNPHYYCLPI-PKREKHRLS 229 (349)
Q Consensus 177 ---T~~sv~lir~ak~vtaEV--------T------P--HHL~------lt~~d~~-~~~~~~~~k~nPP-lR~~~dr~a 229 (349)
.++-.+++.+.++||++| | | |||. ....|+. +.+.| +-|- -|.+.-..+
T Consensus 281 ~S~a~~iae~vN~~~nvt~DvGqv~fg~T~tmt~D~~~~~~l~~~~~~KW~n~DiE~e~g~G----vvP~~Y~~k~~V~a 356 (541)
T cd01304 281 ESGAERIADYVNANDHVTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSG----VVPFIYSPKNPVNA 356 (541)
T ss_pred CHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCHHHHHCCCCCCCCEEEECCCCCCCCC----EEEEEECCCCCCHH
T ss_conf 22599999998369987875264045773688525676664023777863645603256775----57788647775049
Q ss_pred HHHHHHCC-------CCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHH----------------------HHHC
Q ss_conf 99999769-------941897138886531332154577544543679999999----------------------9720
Q gi|254781012|r 230 LRKAALSG-------NPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQ----------------------IFEE 280 (349)
Q Consensus 230 L~~ai~~G-------~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~----------------------~~~~ 280 (349)
|.+|+-=. --..++.||| |.|. +|..-|..+.+|.. -.++
T Consensus 357 lQWAIGLElfLl~~DPwrv~lTTDh----------PNgg-pFt~YP~li~lLMs~~~R~~~l~~~~~~~~~~s~L~~idR 425 (541)
T cd01304 357 LQWAIGLELFLLIDDPWKVILTTDH----------PNGG-PFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPGIDR 425 (541)
T ss_pred HHHHHHHHHHHCCCCCHHEEEECCC----------CCCC-CCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCCCCC
T ss_conf 9998615887545883014650469----------9988-5521588999963989999999865998985056555542
Q ss_pred CCCHHHHHHHHHHCCHHHCCCCC-------CCCEEEEEECCCCEEE-----CHHHCCCCCCEEECC
Q ss_conf 69999999998243178818898-------8852899947971784-----711226777714657
Q gi|254781012|r 281 ENKLENLESFVSINGATWYGIPV-------NTRKISLKRREQPIIF-----DEKITTSTGSITIFN 334 (349)
Q Consensus 281 ~~~L~~l~~~~s~npa~~~gl~~-------~~~~i~l~d~~~~~~v-----~~~~~~sk~~~tpF~ 334 (349)
..+|..+...+..+|||++||+. ..|||++.|++..-.- +-+..+++.+++.=+
T Consensus 426 EysL~EiA~mTRA~pAk~LGL~~kGhLg~GAdADIaIYd~~~d~~d~~~~~~~e~~F~~~~yv~K~ 491 (541)
T cd01304 426 EYSLYEIAIMTRAGPAKLLGLSDKGHLGVGADADIAIYDDDPDQVDPSDYEKVEKAFSRAAYVLKD 491 (541)
T ss_pred CCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEC
T ss_conf 012999999970323766097657887888647678855883325765679999997287569888
No 61
>TIGR01975 isoAsp_dipep beta-aspartyl peptidase; InterPro: IPR010229 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of proteins include metallopeptidases belonging to the MEROPS peptidase family M38 (clan MJ, beta-aspartyl dipeptidase family). This entry includes the beta-aspartyl dipeptidase from Escherichia coli, (3.4.19.5 from EC, IadA), which degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This entry also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that may have an equivalent in function. This family shows homology to dihydroorotases. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerisation, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase..
Probab=99.01 E-value=8.7e-09 Score=73.77 Aligned_cols=295 Identities=15% Similarity=0.149 Sum_probs=167.1
Q ss_pred EEEECCCCEEEEECC----CHHHHHHH----H-HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 558646642375088----17889874----9-87418873999838951489898999999999998386884699501
Q gi|254781012|r 3 KISLRVPDDWHLHLR----DGEILKTV----L-RDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLM 73 (349)
Q Consensus 3 ~l~lp~~~D~HvH~R----eg~~~~~t----~-aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~ 73 (349)
.|.+||+||.|||+= ||.+.|=| + .+..||+|||+-.==|+=.+-+.+.|.+| .|+++ ...+.+|.+.
T Consensus 52 ~i~vPGfID~HVHiiGGGGEgG~~TRTPE~~Ls~~t~~GvTtvVG~lGTDgi~R~m~~L~AK-ArAL~--eEGvs~y~lt 128 (391)
T TIGR01975 52 MIAVPGFIDQHVHIIGGGGEGGPKTRTPELTLSDITKGGVTTVVGLLGTDGITRDMESLLAK-ARALE--EEGVSCYVLT 128 (391)
T ss_pred CEECCCCCCCCEEEEECCCCCCCCCCCHHHECCCEEECCCEEEEEEEECCCCCCCCHHHHHH-HHHHH--HCCEEEEEEE
T ss_conf 08738741474578405768868888432230120112624898886278622584678999-98652--0782699963
Q ss_pred EEEECCCC--CHHHHHHHHHCCCEEEHHHCCCCCEECCCCC--CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHH
Q ss_conf 34527899--9889987440687210221045510025654--1006889999999987398222025755555430014
Q gi|254781012|r 74 TIYLTETT--DPDDVEKGFTSQLVQAIKLYFAGSTTNSHHG--IRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDR 149 (349)
Q Consensus 74 ~~~lt~~~--~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~--v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~ 149 (349)
..|-.+.. ++...........+.++. .-..||.. -.+.+.+- -+.+=++-|+++.=-+-....|..-..+
T Consensus 129 GaY~vP~~TlTgsv~sDl~LIDkvIGvG-----eiAiSDHRSaqPt~~~L~-~~aAeARVGGLLgGK~Giv~~H~Gds~~ 202 (391)
T TIGR01975 129 GAYEVPVRTLTGSVKSDLLLIDKVIGVG-----EIAISDHRSAQPTVEELT-NLAAEARVGGLLGGKPGIVNLHVGDSKR 202 (391)
T ss_pred CCEECCCCCCCCCEEEEEEEEEEEEEEE-----EEEECCCCCCCCCHHHHH-HHHHHHCCCCCCCCCCCEEEEEECCCHH
T ss_conf 3313552001511243267883355424-----572214778874489999-9977511241116887568996369867
Q ss_pred HHHHHHHHHHHHHH-HHCCCE---EEEECCCH--HHHHHHHHHCC--CCCEEEECCCCCCCHHHHHCCCCCCCEEECCCC
Q ss_conf 67654578999996-206953---99705785--89999987057--332023023100397886137888311321346
Q gi|254781012|r 150 ELMFIDKILDPLRN-KLPNLK---IILEHITT--SNGIDYVNNAT--NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIP 221 (349)
Q Consensus 150 E~~~~~~~l~~~~a-~~~~~~---iHi~HiST--~~sv~lir~ak--~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPl 221 (349)
.-+.+ .++... +-+-.+ -||---+. ..+++++|.|- .+|...-|+|+--++ +
T Consensus 203 ~L~~i---~~~v~~~dvPi~q~lPTH~nR~~~LFE~g~~fa~~GG~iDlTss~~p~~~~ege-----------------v 262 (391)
T TIGR01975 203 KLEPI---EELVEETDVPITQFLPTHINRNRELFEAGLEFAKKGGTIDLTSSIDPQFRKEGE-----------------V 262 (391)
T ss_pred HHHHH---HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC-----------------C
T ss_conf 77799---999850588700255776476756899999999739808760278887553554-----------------3
Q ss_pred CCHHHHHHHHHHHHCCCCEE--EEECCC---CCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHCC
Q ss_conf 99999999999997699418--971388---8653133215457754454367999999997-20699999999982431
Q gi|254781012|r 222 KREKHRLSLRKAALSGNPRF--FLGTDS---APHWDSSKESSCGCAGIYTARNALNCLAQIF-EEENKLENLESFVSING 295 (349)
Q Consensus 222 R~~~dr~aL~~ai~~G~i~d--~I~TDH---APH~~eeK~~~~~~~g~~~~~~~~~~~~~~~-~~~~~L~~l~~~~s~np 295 (349)
| =.|+|-+.|..|-... -++||- -|---|+|+- -.-++-+.++++.-+-++. .+..+|++..+.++.|+
T Consensus 263 ~---p~eGlk~~l~~gvPle~vT~sSDgnGS~P~Fde~g~l--~~~~v~~~~sLf~~v~~av~~~~~pL~~al~v~T~nv 337 (391)
T TIGR01975 263 K---PAEGLKKLLEAGVPLEKVTFSSDGNGSLPLFDENGEL--KGLGVGSVESLFEEVREAVKEGDVPLEKALRVITSNV 337 (391)
T ss_pred C---HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCE--EEEEEECHHHHHHHHHHHHHHCCCCHHHCCEEECCCC
T ss_conf 7---6789999996389752356423578874637678746--3357604166789999998514787657646440364
Q ss_pred HHHCCCCCC--------CCEEEEEECCCCEEECHHHCCCCCCEEECC
Q ss_conf 788188988--------852899947971784711226777714657
Q gi|254781012|r 296 ATWYGIPVN--------TRKISLKRREQPIIFDEKITTSTGSITIFN 334 (349)
Q Consensus 296 a~~~gl~~~--------~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~ 334 (349)
|++++|.+. .|||++.|++. +.+ +.-++||+.=.=+
T Consensus 338 A~~L~L~P~KG~I~~g~DADlv~l~~~~-L~I--~~V~ArG~~mv~~ 381 (391)
T TIGR01975 338 AKVLKLSPKKGEISPGKDADLVLLDKDS-LDI--HSVIARGKLMVKE 381 (391)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCC-CCE--EEEEECCCEEECC
T ss_conf 5541367888500789972279865264-844--1577304100017
No 62
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=99.00 E-value=3.4e-08 Score=70.10 Aligned_cols=201 Identities=18% Similarity=0.171 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCC--EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE------EEEECC--------
Q ss_conf 410068899999999873982--2202575555543001467654578999996206953------997057--------
Q gi|254781012|r 112 GIRNIDRVMPVLERMETIGMP--LCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLK------IILEHI-------- 175 (349)
Q Consensus 112 ~v~~~~~~~~~le~~~~~~~~--i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~------iHi~Hi-------- 175 (349)
++...+.+....+...+++.| +-+||-+-..-++ ....+++... + -|.+ +|++||
T Consensus 208 ~vTpreIi~~L~~a~e~LglPH~lHvH~nnLG~PGN----~~ttleT~~~---~--eg~~~~r~q~~HltHiQFhsYgg~ 278 (556)
T TIGR03121 208 GITPREIIKGLARANEELGLPHSIHVHCNNLGVPGN----YETTLDTLDA---A--EGVKPNRNQVLHLTHVQFHSYGGT 278 (556)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC----HHHHHHHHHH---H--CCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 888999999999999854899635771266899861----6899999998---6--599754444057645742014788
Q ss_pred ------CHHHHH-HHHHHCCCCCEEE---------E-----C--CCCCC------CHHHHHCCCCCCCEEECCC-CCCHH
Q ss_conf ------858999-9987057332023---------0-----2--31003------9788613788831132134-69999
Q gi|254781012|r 176 ------TTSNGI-DYVNNATNIAGSI---------T-----V--HHLII------NRNAIFHDGLNPHYYCLPI-PKREK 225 (349)
Q Consensus 176 ------ST~~sv-~lir~ak~vtaEV---------T-----P--HHL~l------t~~d~~~~~~~~~~k~nPP-lR~~~ 225 (349)
|-++.+ +++.+.+++|++| | | |+|.- ...|+.... +. =+-|- -|.+.
T Consensus 279 ~~~~f~S~a~~ia~~vN~~~nit~DvGqv~fg~T~tmt~D~p~e~~l~~~~~~KW~~~DvE~e~-g~--GvvP~~Y~~k~ 355 (556)
T TIGR03121 279 SWRDFESGAEKIADYVNANPNVTIDVGQVTFGETTTMTADGPMEYDLHKLTGLKWANKDVELET-GS--GVVPFKYSPKN 355 (556)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCC-CC--CEEEEEECCCC
T ss_conf 8777205689999998359987887563313770687446588876566516983777422266-76--15678863778
Q ss_pred HHHHHHHHHH--------CCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHH---------------------
Q ss_conf 9999999997--------69941897138886531332154577544543679999999---------------------
Q gi|254781012|r 226 HRLSLRKAAL--------SGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQ--------------------- 276 (349)
Q Consensus 226 dr~aL~~ai~--------~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~--------------------- 276 (349)
-..+|.+|+- |=- ..++.||| |.| .+|..-|..+.+|..
T Consensus 356 ~v~alQWAIGLEl~Ll~~DPw-rv~lTTDh----------PNG-gpFt~YP~li~~Lm~~~~R~~~l~~~~~~~~~~s~L 423 (556)
T TIGR03121 356 PVHALQWAIGLELFLLIKDPW-RVFLTTDH----------PNG-GPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTL 423 (556)
T ss_pred CCCEEEEEECCHHHCCCCCHH-HHEEECCC----------CCC-CCCCCCHHHHHHHCCHHHHHHHHHHCCHHHHHHCCC
T ss_conf 741367760722122589847-82330469----------999-855412899999708999999987659999950565
Q ss_pred -HHHCCCCHHHHHHHHHHCCHHHCCCC-------CCCCEEEEEECCCC--EEE--CHHHCCCCCCEEECCCCE
Q ss_conf -97206999999999824317881889-------88852899947971--784--711226777714657976
Q gi|254781012|r 277 -IFEEENKLENLESFVSINGATWYGIP-------VNTRKISLKRREQP--IIF--DEKITTSTGSITIFNPIF 337 (349)
Q Consensus 277 -~~~~~~~L~~l~~~~s~npa~~~gl~-------~~~~~i~l~d~~~~--~~v--~~~~~~sk~~~tpF~~g~ 337 (349)
-.++..+|..+..++..+|||++||. +..|||++.|++-. ++= +-+..+++.+++.=+ |+
T Consensus 424 ~~idREysL~EiA~~TRA~PAk~LGL~~kGhLg~GAdADIaIYd~~p~~~~~~~~~~e~~F~~~~yv~Kd-G~ 495 (556)
T TIGR03121 424 GGIDREYSLYEIAIMTRAGPAKLLGLTDRGHLGVGADADIAVYDINPDDVDTDYADVEKAFSTALYVFKD-GE 495 (556)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEC-CE
T ss_conf 5554212499999997125778728665789989875757997068543568869999997287579888-98
No 63
>PRK07213 chlorohydrolase; Provisional
Probab=98.99 E-value=6.5e-07 Score=62.19 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH-H-HCCCEEEEECCCHHHHHHHHHHCCCCCE
Q ss_conf 0688999999998739822202575555543001467654578999996-2-0695399705785899999870573320
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRN-K-LPNLKIILEHITTSNGIDYVNNATNIAG 192 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a-~-~~~~~iHi~HiST~~sv~lir~ak~vta 192 (349)
..+.+.++.+.+.+.+.++.+|.......... ..+. +-.+....+.. . ....=+|..|++ .+.++++++.. +..
T Consensus 179 s~e~l~~~~~~a~~~~~~~~~H~aE~~~e~~~-~~~~-~g~~~ve~l~~~g~~~~~lvH~v~l~-d~ei~lla~~g-~~v 254 (378)
T PRK07213 179 SDEELKFICKECRKAGKIASIHAAEHKGSVEY-SLEK-YGITEIERLIDLKFKPDFLVHATHPS-SDDLSLLKENN-IPV 254 (378)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-HHHH-HCCCHHHHHHHCCCCCCEEEECCCCC-HHHHHHHHHCC-CCE
T ss_conf 99999999999997699379961797789999-9998-49987899985799988289835799-99999999759-957
Q ss_pred EEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 23023100397886137888311321346999999999999976994189713888653133215457754454367999
Q gi|254781012|r 193 SITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALN 272 (349)
Q Consensus 193 EVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~ 272 (349)
-.||.= + -.... | -||+ .+.+..|-. --||||-++..-- .++. .+.
T Consensus 255 ~hcP~S----N-~~L~~--G-----~~pv---------~~~~~~Gv~-V~LGTD~~~sn~~---------dm~~---em~ 300 (378)
T PRK07213 255 VVCPRA----N-ASFNV--G-----IPPI---------SEMLEYNIK-LGLGTDNFMANSP---------SIFK---EMD 300 (378)
T ss_pred EECHHH----H-HHHCC--C-----CCCH---------HHHHHCCCC-EEEECCCCCCCCH---------HHHH---HHH
T ss_conf 988376----8-76347--9-----9889---------999978995-8997488866886---------5999---999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHCCHHHCCCC-------CCCCEEEEEECCCC
Q ss_conf 999997206999999999824317881889-------88852899947971
Q gi|254781012|r 273 CLAQIFEEENKLENLESFVSINGATWYGIP-------VNTRKISLKRREQP 316 (349)
Q Consensus 273 ~~~~~~~~~~~L~~l~~~~s~npa~~~gl~-------~~~~~i~l~d~~~~ 316 (349)
+.. .....+-.++.++.+.|+||.+|+. +.++||+++|.+..
T Consensus 301 ~~~--~~~~~~~~e~L~mAT~~GA~aLg~~~~GsLe~Gk~ADli~id~~~~ 349 (378)
T PRK07213 301 FIY--KIYHIDPKEILKMATINGAEILGLQNTGLIKEGFKADFTFIKNGNI 349 (378)
T ss_pred HHH--HHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 999--8739999999999999999980998877707888761999989865
No 64
>PRK12393 amidohydrolase; Provisional
Probab=98.99 E-value=4.1e-07 Score=63.42 Aligned_cols=173 Identities=14% Similarity=0.139 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHCCCEE---EEECCCHHHHHHHHHHCCCC
Q ss_conf 068899999999873982220257555554300146765457899-99962069539---97057858999998705733
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILD-PLRNKLPNLKI---ILEHITTSNGIDYVNNATNI 190 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~-~~~a~~~~~~i---Hi~HiST~~sv~lir~ak~v 190 (349)
+.+.+.++.+.+++.+.++.+|.-....... ..++ .+..+..+ +......+.++ |..|+|. +.++++++. .+
T Consensus 218 s~e~l~~~~~~A~~~~~~~~~H~~E~~~e~~-~~~~-~~g~~pv~~l~~~G~Lg~~~~~aH~v~l~~-~ei~lla~~-g~ 293 (459)
T PRK12393 218 PPELLREVARAARGMGLRLHSHLSETVDYVD-FCRE-RYGMSPVQFVAEHDWLGPDVWFAHLVHLDA-EEIALLAQT-GT 293 (459)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCHHHHH-HHHH-HHCCCHHHHHHHHCCCCCCEEEECCCCCCH-HHHHHHHHC-CC
T ss_conf 9999999999998649917874144357999-9998-809998999997188887627661226887-999999972-97
Q ss_pred CEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHH
Q ss_conf 20230231003978861378883113213469999999999999769941897138886531332154577544543679
Q gi|254781012|r 191 AGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNA 270 (349)
Q Consensus 191 taEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~ 270 (349)
+.-.||.= +-.+ . .|. ||++ +.+..|-. .-||||-+.-. ....++..-..
T Consensus 294 ~v~h~P~S----n~~l-g--~G~-----~p~~---------~~~~~Gv~-v~LGtDg~~sn--------~~~dm~~~mr~ 343 (459)
T PRK12393 294 GIAHCPQS----NARL-G--SGI-----APVL---------AMAAAGVP-ISLGVDGAASN--------ESASMLSEAHF 343 (459)
T ss_pred EEEECHHH----HHHH-C--CCC-----CCHH---------HHHHCCCC-EEEECCCCCCC--------CCHHHHHHHHH
T ss_conf 48976144----7661-6--898-----8899---------99867996-89968998778--------85249999999
Q ss_pred HHHHHHHHHC--CCCHHHHHHHHHHCCHHHCCCC-------CCCCEEEEEECCCCEEECH
Q ss_conf 9999999720--6999999999824317881889-------8885289994797178471
Q gi|254781012|r 271 LNCLAQIFEE--ENKLENLESFVSINGATWYGIP-------VNTRKISLKRREQPIIFDE 321 (349)
Q Consensus 271 ~~~~~~~~~~--~~~L~~l~~~~s~npa~~~gl~-------~~~~~i~l~d~~~~~~v~~ 321 (349)
..++...... ..+-.++.++.+.|+||.+|++ +.++|++++|.+.+-..+.
T Consensus 344 a~l~~r~~~~~~~~~~~~~l~~AT~~gA~aLg~d~iGsLe~Gk~ADlv~~D~~~p~~~p~ 403 (459)
T PRK12393 344 AWLVHRAEGGASATTVEDVIHWGTAGGAQVLGLDAVGTLAVGQAADLAIYDLDGPRFFGF 403 (459)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 999977607987789999999998888998399977768987736889986999755788
No 65
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=98.94 E-value=8.1e-08 Score=67.78 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHC-CCCEECCCCCCCCCCCCHHHHHH-HHHHHHHHH-HHHHCCCEEEEECCC--HHHHHHHHHHCCC
Q ss_conf 068899999999873-98222025755555430014676-545789999-962069539970578--5899999870573
Q gi|254781012|r 115 NIDRVMPVLERMETI-GMPLCIHGEILNQDIDIFDRELM-FIDKILDPL-RNKLPNLKIILEHIT--TSNGIDYVNNATN 189 (349)
Q Consensus 115 ~~~~~~~~le~~~~~-~~~i~~H~E~~~~~~~~~~~E~~-~~~~~l~~~-~a~~~~~~iHi~HiS--T~~sv~lir~ak~ 189 (349)
..+.+.++.+.+++. +.++..|+.......... ++.. ........+ .....+.+..+.|.. +.+.++++++. .
T Consensus 206 s~e~l~~~~~la~~~~~~~i~~H~~E~~~e~~~~-~~~~~~~~~~~~~l~~~GlL~~~~~~aH~v~l~d~ei~~la~~-g 283 (429)
T cd01303 206 SEELLAALGKLAKEHPDLHIQTHISENLDEIAWV-KELFPGARDYLDVYDKYGLLTEKTVLAHCVHLSEEEFNLLKER-G 283 (429)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH-HHHCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHC-C
T ss_conf 8999999999998779986997220656799999-9982799966678875699767559985214887999999955-9
Q ss_pred CCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCC-HH
Q ss_conf 32023023100397886137888311321346999999999999976994189713888653133215457754454-36
Q gi|254781012|r 190 IAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYT-AR 268 (349)
Q Consensus 190 vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~-~~ 268 (349)
++.-.||= ++--+ .. +. || +.+.+..|-. --||||.+|-.. ..++. ..
T Consensus 284 ~~v~~~P~----sn~~l-g~--g~-----~p---------~~~l~~~Gv~-v~LGTD~~~~~s---------~~m~~~mr 332 (429)
T cd01303 284 ASVAHCPT----SNLFL-GS--GL-----FD---------VRKLLDAGIK-VGLGTDVGGGTS---------FSMLDTLR 332 (429)
T ss_pred CEEEECCH----HHHHH-CC--CC-----CC---------HHHHHHCCCE-EEECCCCCCCCC---------CCHHHHHH
T ss_conf 82776730----58772-58--88-----77---------9999856985-997368888999---------47999999
Q ss_pred HHH--HHHHHH---HHCCCCHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECCCCEEE
Q ss_conf 799--999999---7206999999999824317881889--------88852899947971784
Q gi|254781012|r 269 NAL--NCLAQI---FEEENKLENLESFVSINGATWYGIP--------VNTRKISLKRREQPIIF 319 (349)
Q Consensus 269 ~~~--~~~~~~---~~~~~~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~~~~~v 319 (349)
.++ ..+... -....+-.++.+..+.|+||.+|+. +.++||+++|++.+...
T Consensus 333 ~a~~~~~~~~~~~~~~~~~t~~e~l~~ATi~GArALgl~d~iGsLe~Gk~ADlvvvD~~~~~~~ 396 (429)
T cd01303 333 QAYKVSRLLGYELGGHAKLSPAEAFYLATLGGAEALGLDDKIGNFEVGKEFDAVVIDPSATPLL 396 (429)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCCCCCC
T ss_conf 9999999875146899989999999999999999839999804237768344899939997544
No 66
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.92 E-value=1.2e-06 Score=60.57 Aligned_cols=170 Identities=13% Similarity=0.137 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCC-CHHHHHH---HH------------HHHHH-HHHHHHCCCEEEEECCC-
Q ss_conf 0688999999998739822202575555543-0014676---54------------57899-99962069539970578-
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDID-IFDRELM---FI------------DKILD-PLRNKLPNLKIILEHIT- 176 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~-~~~~E~~---~~------------~~~l~-~~~a~~~~~~iHi~HiS- 176 (349)
..+.+.++.+.+.+.+.++.+|.-....... ...+... .. .+..+ +......+.++.+.|..
T Consensus 161 s~e~~~~~~~~a~~~~~~~~~HlaE~~~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~pv~~l~~~G~L~~~~~~aH~~~ 240 (381)
T cd01312 161 HPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPKKLATAIDFLDMLGGLGTRVSFVHCVY 240 (381)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCC
T ss_conf 99999999999985399177602587889999998506313566664100011257898999998399899879995258
Q ss_pred -HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
Q ss_conf -5899999870573320230231003978861378883113213469999999999999769941897138886531332
Q gi|254781012|r 177 -TSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSK 255 (349)
Q Consensus 177 -T~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK 255 (349)
|.+.++++++.. ++.-.||- ++ -.... +. ||++. .+..|-. --||||-.....
T Consensus 241 l~~~di~~la~~g-~~v~~cP~----Sn-~~lg~--G~-----~pi~~---------~~~~Gv~-v~LGTDg~~~n~--- 294 (381)
T cd01312 241 ANLEEAEILASRG-ASIALCPR----SN-RLLNG--GK-----LDVSE---------LKKAGIP-VSLGTDGLSSNI--- 294 (381)
T ss_pred CCHHHHHHHHHCC-CEEEECHH----HH-HHHCC--CC-----CCHHH---------HHHCCCE-EEEECCCCCCCC---
T ss_conf 9989999999769-85887767----78-87468--97-----36999---------9978890-999489987788---
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCEE
Q ss_conf 15457754454367999999997206---999999999824317881889------8885289994797178
Q gi|254781012|r 256 ESSCGCAGIYTARNALNCLAQIFEEE---NKLENLESFVSINGATWYGIP------VNTRKISLKRREQPII 318 (349)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~---~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~~ 318 (349)
+ ......+-....+.... .+-.++.++.+.|+||.+|+. +.++||+++|.+.|..
T Consensus 295 -------~-~d~~~~mr~~~~~~~~~~~~~~~~~~l~~aT~~gA~aLgl~iGsLe~Gk~ADliv~D~~~P~~ 358 (381)
T cd01312 295 -------S-LSLLDELRALLDLHPEEDLLELASELLLMATLGGARALGLNNGEIEAGKRADFAVFELPGPGI 358 (381)
T ss_pred -------C-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf -------6-239999999999724589988999999999999999958878536877867899994899998
No 67
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=2.2e-06 Score=58.96 Aligned_cols=98 Identities=16% Similarity=0.054 Sum_probs=62.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC----
Q ss_conf 9999999976994189713888653133215457754454367999999997206999999999824317881889----
Q gi|254781012|r 227 RLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIP---- 302 (349)
Q Consensus 227 r~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~---- 302 (349)
+.....++..|.. ..|+|||-|-+. .....+.+-+.+..+ .+-+......+.|||+.+|+.
T Consensus 296 ~~~~~~l~~~GV~-vai~TD~~~~~~-------------~~~l~~~m~l~~~~g-mtp~EaL~a~T~naA~alG~~~~~G 360 (406)
T COG1228 296 YKPARKLIDAGVK-VAIGTDHNPGTS-------------HGSLALEMALAVRLG-MTPEEALKAATINAAKALGLADKVG 360 (406)
T ss_pred HHHHHHHHHCCCE-EEEECCCCCCCC-------------HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 0669999986996-999778997640-------------446999999999829-9999999999999999819867656
Q ss_pred ----CCCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEEC
Q ss_conf ----88852899947971784711226777714657976983
Q gi|254781012|r 303 ----VNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLY 340 (349)
Q Consensus 303 ----~~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~ 340 (349)
+..+||+++|-+-.-.+....-.++..-+..+ |+.++
T Consensus 361 sle~Gk~ADlvv~~~dp~~~i~y~~~~~~v~~v~k~-G~~~~ 401 (406)
T COG1228 361 SLEPGKDADLVVWDGDPLADIPYFLGLNKVEAVIKD-GKVVY 401 (406)
T ss_pred CCCCCCCCCEEEECCCCHHHCCCCCCCCCEEEEEEC-CEEEE
T ss_conf 637887455899868980002210367751699989-99940
No 68
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=98.90 E-value=9.8e-07 Score=61.08 Aligned_cols=172 Identities=15% Similarity=0.080 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHCCCE---EEEECCCHHHHHHHHHHCCCC
Q ss_conf 068899999999873982220257555554300146765457899-9996206953---997057858999998705733
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILD-PLRNKLPNLK---IILEHITTSNGIDYVNNATNI 190 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~-~~~a~~~~~~---iHi~HiST~~sv~lir~ak~v 190 (349)
..+.+.++.+.+.+++.++.+|......... .....+-.+... +......+.+ .|..|++ .+.++++++.. +
T Consensus 201 s~~~l~~~~~~A~~~~~~v~~H~~E~~~e~~--~~~~~~G~~pv~~l~~~G~L~~~~~~~H~~~l~-~~di~~la~~g-~ 276 (444)
T PRK09045 201 SDENLERIRVLAEQLDAPIHIHLHETAQEIE--DSLKQHGQRPLARLDRLGLLGPRLIAVHMTQLT-DAEIALLAETG-C 276 (444)
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCCHHHHH--HHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECC-HHHHHHHHHHC-C
T ss_conf 8899999999998669918860134588999--999884998899999726899763255447418-47999999809-9
Q ss_pred CEEEECC-CCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHH
Q ss_conf 2023023-100397886137888311321346999999999999976994189713888653133215457754454367
Q gi|254781012|r 191 AGSITVH-HLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARN 269 (349)
Q Consensus 191 taEVTPH-HL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~ 269 (349)
+.-.||- .+.+ .. +. ||+ .+.+..|-. ..||||.++-.. ...++..--
T Consensus 277 ~v~~~P~sn~~l------~~--g~-----~p~---------~~l~~~Gv~-v~lGtDg~~sn~--------~~d~~~emr 325 (444)
T PRK09045 277 SVVHCPESNLKL------AS--GF-----CPV---------AKLWRAGVN-VAIGTDGAASNN--------DLDLFGEMR 325 (444)
T ss_pred EEEECCCCCHHC------CC--CC-----CCH---------HHHHHCCCC-EEEECCCCCCCC--------CCCHHHHHH
T ss_conf 799882110003------67--88-----889---------999877993-798679886788--------511999999
Q ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECCCCEEECH
Q ss_conf 99999999720---6999999999824317881889--------8885289994797178471
Q gi|254781012|r 270 ALNCLAQIFEE---ENKLENLESFVSINGATWYGIP--------VNTRKISLKRREQPIIFDE 321 (349)
Q Consensus 270 ~~~~~~~~~~~---~~~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~~~~~v~~ 321 (349)
...++...... ..+-.++.++.+.|+||.+|+. +.++||+++|.+.+-..+.
T Consensus 326 ~a~~~~r~~~~~~~~l~~~e~l~~aT~~gA~aLg~~d~iGsLe~Gk~ADlvv~d~~~~~~~p~ 388 (444)
T PRK09045 326 TAALLAKAVAGDATALPAHTALRMATLNGARALGLEDEIGSLEPGKQADLVAVDLSGLETQPV 388 (444)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 999999986489988999999999999999995899876663887776989997999865775
No 69
>PRK09229 N-formimino-L-glutamate deiminase; Validated
Probab=98.88 E-value=7.4e-07 Score=61.85 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHHCCCCEECCCCCCCCCC-CCHHHHHHHHHHHHH-HHHHHHCCCEE---EEECCCHHHHHHHHHHCC
Q ss_conf 0068899999999873982220257555554-300146765457899-99962069539---970578589999987057
Q gi|254781012|r 114 RNIDRVMPVLERMETIGMPLCIHGEILNQDI-DIFDRELMFIDKILD-PLRNKLPNLKI---ILEHITTSNGIDYVNNAT 188 (349)
Q Consensus 114 ~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~-~~~~~E~~~~~~~l~-~~~a~~~~~~i---Hi~HiST~~sv~lir~ak 188 (349)
...+.+.++.+.+++.+.++.+|.-...... ... ..+-.+-.+ +......+.+. |-.|++ .+.++++++.
T Consensus 213 ~s~e~l~~~~~~A~~~~~~ih~HlaE~~~E~~~~~---~~~G~~pv~~L~~~GlL~~~~~~aH~v~l~-d~di~lLa~~- 287 (457)
T PRK09229 213 VTPDQLAAVLALADADDGPVHIHIAEQQKEVDDCL---AWSGARPVEWLLDHAPVDARWCLVHATHLT-DAETAALARS- 287 (457)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHH---HHHCCCHHHHHHHCCCCCCCCEEEEEECCC-HHHHHHHHHC-
T ss_conf 89999999999998449961454059878999999---996898488897477678885899863499-8999999953-
Q ss_pred CCCEEEECC-CCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCH
Q ss_conf 332023023-1003978861378883113213469999999999999769941897138886531332154577544543
Q gi|254781012|r 189 NIAGSITVH-HLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTA 267 (349)
Q Consensus 189 ~vtaEVTPH-HL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~ 267 (349)
.++.-.||. .+.| .. |. +|++ +.+..|-. --||||...- ..++..
T Consensus 288 G~~VahcP~SN~~L------gs--Gi-----aPv~---------~~l~aGv~-vgLGTDsn~~-----------~d~~~e 333 (457)
T PRK09229 288 GAVAGLCPTTEANL------GD--GI-----FPAV---------DYLAAGGR-FGIGSDSHVS-----------IDLAEE 333 (457)
T ss_pred CCCEEECCHHHHHC------CC--CC-----CCHH---------HHHHCCCC-EEEECCCCCC-----------CCHHHH
T ss_conf 99389782547650------58--88-----8899---------99877996-8997688866-----------798999
Q ss_pred HHHHHHHHHHHHC----------CCCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCEE
Q ss_conf 6799999999720----------6999999999824317881889------8885289994797178
Q gi|254781012|r 268 RNALNCLAQIFEE----------ENKLENLESFVSINGATWYGIP------VNTRKISLKRREQPII 318 (349)
Q Consensus 268 ~~~~~~~~~~~~~----------~~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~~ 318 (349)
--.+.+...+..+ ..+-.++.++.+.++||.+|++ +.++|++++|.+.+..
T Consensus 334 mr~~~~~~rl~~~~~~~~~~~~~~~~a~~~l~mAT~~GAraLG~~~GsLe~Gk~ADlv~id~~~p~l 400 (457)
T PRK09229 334 LRLLEYGQRLRDRRRNVLAAAAQGSVGRRLFDAALAGGAQALGRPIGGLAVGARADLVVLDLDHPAL 400 (457)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 9999999999832223567876557499999999999999829877773788827989990899766
No 70
>PRK05985 cytosine deaminase; Provisional
Probab=98.87 E-value=6e-06 Score=56.22 Aligned_cols=294 Identities=15% Similarity=0.052 Sum_probs=128.0
Q ss_pred CEEEECCCCEEEEEC---------CC-------HHHH-------------------HHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 655864664237508---------81-------7889-------------------874987418873999838951489
Q gi|254781012|r 2 KKISLRVPDDWHLHL---------RD-------GEIL-------------------KTVLRDTAKNFRRALVMPNIDPPI 46 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~---------Re-------g~~~-------------------~~t~aa~aGG~TtV~~MPNT~Ppi 46 (349)
.++++||+||.|+|+ +. .+.. .....+...|+|++-.+-+..|..
T Consensus 47 G~lv~PGlVd~HtHl~~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gtt~~~~~~~~~~~~ 126 (398)
T PRK05985 47 GALALPGLVDGHIHLDKTFWGMPWYPNEPGPSLRERIANERRYRLASGAPAAERALALARAAAAAGTTAMRSHVDVDPTA 126 (398)
T ss_pred CCEECCCCCHHHHCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 98877475316348301342474446787741999999899877410469999999999999957978999731256752
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEE--EEEE-EEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHH
Q ss_conf 89899999999999838688469--9501-34527899988998744068721022104551002565410068899999
Q gi|254781012|r 47 ITVDDACAYRQRILNALPPEYDF--SPLM-TIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVL 123 (349)
Q Consensus 47 ~t~e~~~~~~~r~~~~~~~~~~~--~~~~-~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~l 123 (349)
. ...++...+ ..+........ ...+ .+.+......+.+.+......-....+.+... . -.....+..++
T Consensus 127 ~-~~~~~~~~~-~~~~~~~~~~~~~~a~p~~g~~~~~~~~~~l~~~~~~~~~~~g~~~p~~~-----~-~~~~~~l~~~~ 198 (398)
T PRK05985 127 G-LRHLEAVLA-ARETLRGIIDIQLVAFPQSGVLSRPGTAELLDEALRAGADVVGGLDPAGI-----D-GDPDGQLDIVF 198 (398)
T ss_pred C-HHHHHHHHH-HHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCC-----C-CCHHHHHHHHH
T ss_conf 2-679999999-99973445452688457642236857799999999837862356277576-----8-88699999999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH-----HHHHHHHHHCCCCCEEEECCC
Q ss_conf 999873982220257555554300146765457899999620695399705785-----899999870573320230231
Q gi|254781012|r 124 ERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITT-----SNGIDYVNNATNIAGSITVHH 198 (349)
Q Consensus 124 e~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST-----~~sv~lir~ak~vtaEVTPHH 198 (349)
+.+.+++.++.+|+...... .....+...+...+.....++.+.|... .+.+..+.+ .-..+.+++
T Consensus 199 ~lA~~~g~~i~iH~~e~~~~------~~~~~~~~~~~~~~~gl~g~v~~~H~~~l~~l~~~~~~~~~~-~~a~~~v~~-- 269 (398)
T PRK05985 199 GLAERHGVGIDIHLHEPGEL------GAFQLELIAARTRALGMQGRVAVSHAFCLGDLPERELDRLAA-RLAEAGVAI-- 269 (398)
T ss_pred HHHHHCCCCEEEEECCCCCC------HHHHHHHHHHHHHHHCCCCCEEEEHHHHCCCCCHHHHHHHHH-HHHCCCCCE--
T ss_conf 99998599868987577771------077999999999982999998977555412699999999999-985299550--
Q ss_pred CCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 00397886137888311321346999999999999976994189713888653133215457754454367999999997
Q gi|254781012|r 199 LIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIF 278 (349)
Q Consensus 199 L~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~ 278 (349)
.-+ ...+ .--||++ +| ..-|.. -.+|||.++-+. .|++.... .. ..++....
T Consensus 270 -~~~------~~~~---~~~~pv~------~l---~~aGV~-V~LGtDg~~~~~----~p~~~~d~--l~--~a~~~~~~ 321 (398)
T PRK05985 270 -MTN------APGS---RPVPPVA------AL---REAGVT-VFGGNDGIRDTW----WPYGNGDM--LE--RAMLIGYR 321 (398)
T ss_pred -ECC------CCCC---CCCCCHH------HH---HHCCCC-EEECCCCCCCCC----CCCCCHHH--HH--HHHHHHHH
T ss_conf -126------8767---8987499------99---976996-896378788877----87788789--99--99999975
Q ss_pred HCCC---CHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCEEECHHHCCCCCCEEECCCCEEECCEEEEECC
Q ss_conf 2069---99999999824317881889------8885289994797178471122677771465797698338887416
Q gi|254781012|r 279 EEEN---KLENLESFVSINGATWYGIP------VNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEVMLHDN 348 (349)
Q Consensus 279 ~~~~---~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~~g~~l~w~V~~~~~ 348 (349)
.+.. .+....++.+.|+||.+||. +.++|++++|.+.+...+-.... .-+.|. .|||+.+|.
T Consensus 322 ~~~~~~~~~~~al~maT~~gAraLGl~d~~Le~Gk~ADlVl~d~~~~~~~~~~~p~---~~~V~~-----~Grvv~r~g 392 (398)
T PRK05985 322 SGFRTDDELEVALDCVTHGGARALGLADYGLAVGCRADFVLVDAETVAEAVVAVPV---RRLVVR-----GGRIVARDG 392 (398)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCC---CEEEEE-----CCEEEEECC
T ss_conf 28998799999999998999997599986818998307899969898999740896---419999-----999997678
No 71
>cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=98.86 E-value=1.1e-06 Score=60.71 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCEEE
Q ss_conf 99999999824317881889------88852899947971784
Q gi|254781012|r 283 KLENLESFVSINGATWYGIP------VNTRKISLKRREQPIIF 319 (349)
Q Consensus 283 ~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~~v 319 (349)
+-.++.++.+.|+||.+|++ +.++|++++|.+.+...
T Consensus 348 ~~~~vl~mAT~~GA~aLgl~iGsLe~Gk~ADlvvvD~~~p~~~ 390 (418)
T cd01313 348 SARALLDAALAGGAQALGLATGALEAGARADLLSLDLDHPSLA 390 (418)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 8999999999999999689888778768307899889997657
No 72
>PRK09228 guanine deaminase; Provisional
Probab=98.85 E-value=1.8e-06 Score=59.40 Aligned_cols=73 Identities=14% Similarity=0.052 Sum_probs=44.0
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH---HHCCCCHHHHHHHHHHCCHHHCCCC----
Q ss_conf 999997699418971388865313321545775445436799999999---7206999999999824317881889----
Q gi|254781012|r 230 LRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQI---FEEENKLENLESFVSINGATWYGIP---- 302 (349)
Q Consensus 230 L~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~---~~~~~~L~~l~~~~s~npa~~~gl~---- 302 (349)
+.+.+..|.. -.||||..|-+- + +....+.....+ .....+-.++.++.+.|+||.+|+.
T Consensus 305 ~~~l~~~Gv~-v~LGTD~~~~~s------~------~~~~~m~~a~~~~~~~~~~lt~~eaL~~ATi~GAraLGl~d~iG 371 (429)
T PRK09228 305 LKRAWAAGVR-VGLATDVGGGTS------F------SMLQTMNEAYKVAQLQGYRLSPFQAFYLATLGGARALGLDDRIG 371 (429)
T ss_pred HHHHHHCCCC-EEEECCCCCCCC------C------CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 8999746993-799637899998------1------69999999999971269999999999999999999848999633
Q ss_pred ----CCCCEEEEEECCC
Q ss_conf ----8885289994797
Q gi|254781012|r 303 ----VNTRKISLKRREQ 315 (349)
Q Consensus 303 ----~~~~~i~l~d~~~ 315 (349)
+..+|++++|++.
T Consensus 372 sLe~Gk~ADlvvlD~~~ 388 (429)
T PRK09228 372 NLAPGKEADFVVLDPAA 388 (429)
T ss_pred EECCCCCCCEEEECCCC
T ss_conf 04887876889996999
No 73
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=98.85 E-value=1.9e-06 Score=59.28 Aligned_cols=197 Identities=11% Similarity=0.034 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHCCCEE---EEECCCHHHHHHHHHHCCCC
Q ss_conf 068899999999873982220257555554300146765457899-99962069539---97057858999998705733
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILD-PLRNKLPNLKI---ILEHITTSNGIDYVNNATNI 190 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~-~~~a~~~~~~i---Hi~HiST~~sv~lir~ak~v 190 (349)
..+.+.++.+.+++.+.++..|+-........ ....+..+..+ +......+.++ |-.|++ .+.++++++. .+
T Consensus 216 s~~ll~~~~~~A~~~~~~~~~H~~E~~~e~~~--~~~~~G~~pv~~l~~~G~L~~~~~~~H~~~l~-~~di~~la~~-g~ 291 (456)
T PRK08203 216 SRELMRESAALARRLGVRLHTHLAETVDEIAF--CLEKFGMRPVDYLEDLGWLGPDVWLAHCVHLD-DAEIARLART-GT 291 (456)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH--HHHHHCCCHHHHHHHHCCCCCCCEEEEEECCC-HHHHHHHHHC-CC
T ss_conf 99999999999986799379702676468999--99984987899999828878881675122499-9999999984-99
Q ss_pred CEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHH
Q ss_conf 20230231003978861378883113213469999999999999769941897138886531332154577544543679
Q gi|254781012|r 191 AGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNA 270 (349)
Q Consensus 191 taEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~ 270 (349)
+.-.||-- +--+ . .+ -||++ +| +..|-. .-+|||-.+... ...++..--.
T Consensus 292 ~v~~~P~S----n~~l-~--~g-----~~p~~------~l---~~aGv~-v~lGTDg~~sn~--------~~d~~~emr~ 341 (456)
T PRK08203 292 GVAHCPCS----NMRL-A--SG-----IAPVR------EL---RAAGVP-VGLGVDGSASND--------GSNMIGEARQ 341 (456)
T ss_pred CEEECCHH----HHHC-C--CC-----CCCHH------HH---HHCCCC-EEEECCCCCCCC--------CCCHHHHHHH
T ss_conf 57878212----2005-7--78-----88899------99---878996-898327776689--------7579999999
Q ss_pred HHHHHHHHH--CCCCHHHHHHHHHHCCHHHCCCC-------CCCCEEEEEECCCCEEECHHHCC-----CCCCEEECCCC
Q ss_conf 999999972--06999999999824317881889-------88852899947971784711226-----77771465797
Q gi|254781012|r 271 LNCLAQIFE--EENKLENLESFVSINGATWYGIP-------VNTRKISLKRREQPIIFDEKITT-----STGSITIFNPI 336 (349)
Q Consensus 271 ~~~~~~~~~--~~~~L~~l~~~~s~npa~~~gl~-------~~~~~i~l~d~~~~~~v~~~~~~-----sk~~~tpF~~g 336 (349)
..++..+.. ...+-.++.++.+.|+||.+|+. +.++||+++|.+.+...+...+. +.+.+ -+ -
T Consensus 342 a~~~~r~~~~~~~l~~~e~l~~AT~~gA~aLg~~diGsLe~Gk~ADlvv~D~~~~~~~p~~dp~~~lv~~~~~~--V~-~ 418 (456)
T PRK08203 342 ALLLQRLRYGPDAMTAREALEIATLGGARVLGRDDIGALAPGKQADLALFDLDELRFSGAHDPVAALVLCGAPR--AD-R 418 (456)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHCCCCCC--CC-E
T ss_conf 99999874699778999999999999999819987733788871798998799987689878588854448998--53-9
Q ss_pred EEECCEEEEECC
Q ss_conf 698338887416
Q gi|254781012|r 337 FPLYWEVMLHDN 348 (349)
Q Consensus 337 ~~l~w~V~~~~~ 348 (349)
--+.|+++++|.
T Consensus 419 v~V~G~~v~~dg 430 (456)
T PRK08203 419 VMVGGRWVVRDG 430 (456)
T ss_pred EEECCEEEEECC
T ss_conf 999999999999
No 74
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=98.82 E-value=1.2e-06 Score=60.50 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCEEECH
Q ss_conf 999999999824317881889------8885289994797178471
Q gi|254781012|r 282 NKLENLESFVSINGATWYGIP------VNTRKISLKRREQPIIFDE 321 (349)
Q Consensus 282 ~~L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~~v~~ 321 (349)
.+-.++.++.+.||||.+|++ +..+||+++|.+.|...+.
T Consensus 330 l~~~~~l~~aT~ngA~aLg~d~Gsie~Gk~ADlvv~d~~~p~~~p~ 375 (432)
T PRK06038 330 LPARQVLEMATVNGAKALGIETGMLKVGKLADIIIVDMKKPHLTPC 375 (432)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 8999999999999999968887607888717889983899866786
No 75
>pfam07969 Amidohydro_3 Amidohydrolase family.
Probab=98.82 E-value=6.1e-08 Score=68.56 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHCCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 1006889999999987398222025755555430014676545789999-962069539970578589999987057332
Q gi|254781012|r 113 IRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPL-RNKLPNLKIILEHITTSNGIDYVNNATNIA 191 (349)
Q Consensus 113 v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~-~a~~~~~~iHi~HiST~~sv~lir~ak~vt 191 (349)
..+.+.+.+.++.+.+.|.++.+||.-.. .+...++.. .......++.-+.+.+.+.++.+++ ..+.
T Consensus 209 ~~~~~~~~~~v~~a~~~G~~v~~Ha~gd~-----------ai~~~l~a~~~~~~~~~~i~H~~~~~~~~~~~~~~-lg~~ 276 (392)
T pfam07969 209 IDDAEELEELVAAAHAAGLQVRVHASGDA-----------AIDAVLNAYEAVLADLGRLIHAGVATTDTIDRAAE-LGLR 276 (392)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCHH-----------HHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHH-CCCC
T ss_conf 79999999999999986994799855426-----------79999999999765468763013389889999998-2981
Q ss_pred EEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHH
Q ss_conf 02302310039788613788831132134699999999999997699418971388865313321545775445436799
Q gi|254781012|r 192 GSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNAL 271 (349)
Q Consensus 192 aEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~ 271 (349)
..++|.|+.+..+.+.. .++ +.|. +.-..+...+..|- ...+|||. |-..- .|+ .+...+.
T Consensus 277 ~~~~p~~~~~~~~~~~~-~~~-------~~r~-~~~~p~~~l~~~Gv-~v~~gsD~-pv~~~---~P~-----~~~~~a~ 337 (392)
T pfam07969 277 ADTQPHFLAYDGYWDRS-RLG-------PERA-RGSLPIKLLLNAGV-KVALGSDA-PVATY---DPW-----SGIGAAV 337 (392)
T ss_pred EEECCCEECCCCHHHHH-CCC-------HHHH-HCCCHHHHHHHCCC-EEEEECCC-CCCCC---CHH-----HHHHHHH
T ss_conf 56113410353046652-242-------7776-41344999997598-89973789-88886---779-----9999985
Q ss_pred H--------HHHHHHHCCCCHHHHHHHHHHCCHHHCCCCCCCCEE
Q ss_conf 9--------999997206999999999824317881889888528
Q gi|254781012|r 272 N--------CLAQIFEEENKLENLESFVSINGATWYGIPVNTRKI 308 (349)
Q Consensus 272 ~--------~~~~~~~~~~~L~~l~~~~s~npa~~~gl~~~~~~i 308 (349)
. .....-++.++++..++.+|.|||+.+|+...+|.|
T Consensus 338 ~r~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~e~~~Gsi 382 (392)
T pfam07969 338 MRRTAEMLEGRVLKPDERLSLEEALALYTRGPAYALGLEDRKGTL 382 (392)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 157766788766582568799999999999999994876787165
No 76
>TIGR03179 gua_deam guanine deaminase. This enzyme converts guanine to xanthine in the catabolism of guanine. Seed members were included by virtue of their proximity to other genes of the guanine/xanthine/urate/allantoate catabolic pathway. The guanine deaminase in E. coli has been characterized. Eukaryotic sequences were not included in the seed and fall below trusted to this model.
Probab=98.80 E-value=4.7e-07 Score=63.06 Aligned_cols=74 Identities=18% Similarity=0.131 Sum_probs=43.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHH---HHHCCCCHHHHHHHHHHCCHHHCCCC----
Q ss_conf 99999769941897138886531332154577544543679999999---97206999999999824317881889----
Q gi|254781012|r 230 LRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQ---IFEEENKLENLESFVSINGATWYGIP---- 302 (349)
Q Consensus 230 L~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~---~~~~~~~L~~l~~~~s~npa~~~gl~---- 302 (349)
+.+.+..|.. --||||-.|-+. ++....+..... ......+-.+..+..+.|+||.+|+.
T Consensus 304 ~~~l~~aGV~-v~LGTD~~~~~~------------~~~~~~m~~a~~~~~~~~~~l~~~e~L~~ATi~gAraLGl~d~iG 370 (427)
T TIGR03179 304 LRKAEEHGVR-VALGTDVGGGTS------------FSMLRTMNEAYKVQQLQGEALSPFQSLYLATLGGARALDLEDRIG 370 (427)
T ss_pred HHHHHHCCCE-EEEECCCCCCCC------------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999865986-999407888998------------799999999999986278999999999999999999849998753
Q ss_pred ----CCCCEEEEEECCCC
Q ss_conf ----88852899947971
Q gi|254781012|r 303 ----VNTRKISLKRREQP 316 (349)
Q Consensus 303 ----~~~~~i~l~d~~~~ 316 (349)
+.++||+++|++.+
T Consensus 371 sLe~GK~ADlvvlD~~~~ 388 (427)
T TIGR03179 371 NLDPGKEADFVVLDPRAT 388 (427)
T ss_pred CCCCCCCCCEEEECCCCC
T ss_conf 718888568899948998
No 77
>PRK08418 chlorohydrolase; Provisional
Probab=98.78 E-value=3.6e-06 Score=57.58 Aligned_cols=165 Identities=10% Similarity=0.065 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHH-HHH---HHHHH----------HHHHHHHHHCCCEE---EEECCCH
Q ss_conf 0688999999998739822202575555543001-467---65457----------89999962069539---9705785
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFD-REL---MFIDK----------ILDPLRNKLPNLKI---ILEHITT 177 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~-~E~---~~~~~----------~l~~~~a~~~~~~i---Hi~HiST 177 (349)
..+.+.++.+.+.+.+.++..|.-.......... +.. .+..+ ..+ .+...-+.+. |-.|+|
T Consensus 188 s~~~l~~~~~~A~~~~~~i~~H~~Es~~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~i~aH~v~l~- 265 (407)
T PRK08418 188 HPILAKKALDLAKKSNLLVSTHFLESKAEREWLEESKGWFKKFFERFLKHPKPLYTPKD-FLDLFKGLRTLFTHCVYAS- 265 (407)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHH-HHHHCCCCCEEEEEECCCC-
T ss_conf 89999999999863698599997898899999997237076789873568642257677-8861467883999747789-
Q ss_pred HHHHHHHHHCCCCCEEEEC-CCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC-CCCCHHHH
Q ss_conf 8999998705733202302-310039788613788831132134699999999999997699418971388-86531332
Q gi|254781012|r 178 SNGIDYVNNATNIAGSITV-HHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDS-APHWDSSK 255 (349)
Q Consensus 178 ~~sv~lir~ak~vtaEVTP-HHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDH-APH~~eeK 255 (349)
.+.++++++.. ++.-.|| -.++|. . |. ||++ +.+..|-. -.||||- ++...
T Consensus 266 d~ei~lla~~g-~~VahcP~SN~~lg------~--G~-----~pv~---------~~~~~Gv~-V~LGTDg~~sn~~--- 318 (407)
T PRK08418 266 EEELEKIKSLG-HSIIHCPFSNRLLS------N--KA-----LDLE---------KIKKAGIP-LSIATDGLSSNIS--- 318 (407)
T ss_pred HHHHHHHHHCC-CEEEECHHHHHHCC------C--CC-----CCHH---------HHHHCCCC-EEEECCCCCCCCC---
T ss_conf 99999999719-96999878898626------8--99-----8899---------99868996-8996899877897---
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCC--CC-HHHHHHHHHHCCHHHCCCC------CCCCEEEEEECCCCE
Q ss_conf 15457754454367999999997206--99-9999999824317881889------888528999479717
Q gi|254781012|r 256 ESSCGCAGIYTARNALNCLAQIFEEE--NK-LENLESFVSINGATWYGIP------VNTRKISLKRREQPI 317 (349)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~--~~-L~~l~~~~s~npa~~~gl~------~~~~~i~l~d~~~~~ 317 (349)
..++. .+-....+.... .. -.++.++.+.|+||.+|+. +.++||+++|...+.
T Consensus 319 ------~dm~~---emr~a~~~~~~~~~~~~a~~~l~maT~~GA~aLgl~~Gsle~Gk~ADlvviDl~~~~ 380 (407)
T PRK08418 319 ------LSLLD---ELRAALLTHKNMPLLELAKILLLSATKYGAKALGLNNGEIKEGKIADLSVFELPEKF 380 (407)
T ss_pred ------CCHHH---HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf ------38999---999999960589987419999999999999996899952688886689999489999
No 78
>PRK06886 hypothetical protein; Validated
Probab=98.77 E-value=4.6e-06 Score=56.94 Aligned_cols=263 Identities=14% Similarity=0.079 Sum_probs=137.5
Q ss_pred EEECCCCEEEEECCC--------------H-------------------HHH----HHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 586466423750881--------------7-------------------889----874987418873999838951489
Q gi|254781012|r 4 ISLRVPDDWHLHLRD--------------G-------------------EIL----KTVLRDTAKNFRRALVMPNIDPPI 46 (349)
Q Consensus 4 l~lp~~~D~HvH~Re--------------g-------------------~~~----~~t~aa~aGG~TtV~~MPNT~Ppi 46 (349)
+.+.|++|.|+||-- | |+. ....-+++-|+|.|-..-+..|.+
T Consensus 17 ~~~gGFVd~H~HLDka~t~~~~~~~~~~sgtL~e~i~~~~~~K~~~T~eDv~~Ra~~~l~~~ia~Gt~aiRTHVDvDp~~ 96 (328)
T PRK06886 17 IKKGGWVNAHAHADRAFTMTPEKIGIYHNSNLQQKWDLVDEVKRTSSVDDYYARFCQSIELMISQGVTAFGTFVDIDPVC 96 (328)
T ss_pred HHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 86088025361325363178866575567579999999998500288999999999999999981953157555136543
Q ss_pred CC--HHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCC-CCHHHHHHHHH
Q ss_conf 89--8999999999998386884699501345278999889987440687210221045510025654-10068899999
Q gi|254781012|r 47 IT--VDDACAYRQRILNALPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHG-IRNIDRVMPVL 123 (349)
Q Consensus 47 ~t--~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~-v~~~~~~~~~l 123 (349)
.. .+.+.+.+++.+.. .+..+...+--++.....-+.+..+.+...+. +|.+.+++.. -...+.+..+|
T Consensus 97 gl~~l~a~~~lre~~~~~--idlQivafpq~G~~~~~~~~~l~~~~~~vDvV------GGiP~~d~~~~~~~~~~ld~lf 168 (328)
T PRK06886 97 EDRAIIAAHKAREVYKSD--IILKFANQTLKGVIEPTAKKWFDIGSEMVDMI------GGLPYRDELDYGRGLEAMDILL 168 (328)
T ss_pred CHHHHHHHHHHHHHHHCC--EEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC------CCCCCCCCCCCHHHHHHHHHHH
T ss_conf 447899999999986277--46999567631225816999999998755744------8876778666101699999999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH---------HHHHHCCCCCEEE
Q ss_conf 9998739822202575555543001467654578999996206953997057858999---------9987057332023
Q gi|254781012|r 124 ERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGI---------DYVNNATNIAGSI 194 (349)
Q Consensus 124 e~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv---------~lir~ak~vtaEV 194 (349)
+.++++|++|-+||-... +...+.-+ ...+...+.-.+.|+-..|..+-.+. ++++++ +|+.-.
T Consensus 169 ~lA~~~g~~vD~H~De~~---dp~~~~le---~la~~t~~~G~~GRVt~sH~~sL~~~~~~~~~~l~~~la~a-gi~vis 241 (328)
T PRK06886 169 DKAKSLGIMCHVHVDQFN---TPKEKETE---QLCDKTIEHGMQGRVVAIHGISIGAHSKEYRYKLYEKMRDA-QMMMIA 241 (328)
T ss_pred HHHHHCCCCEEEECCCCC---CCCHHHHH---HHHHHHHHHCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHHC-CCCEEE
T ss_conf 999984997476018999---91176899---99999999577997775330146438999999999999984-996998
Q ss_pred ECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 02310039788613788831132134699999999999997699418971388865313321545775445436799999
Q gi|254781012|r 195 TVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCL 274 (349)
Q Consensus 195 TPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~ 274 (349)
||.= .+ .+ .++.+ ..|.-|.-.-...|.++ | +...+|||.- ..+|-+.|-........++
T Consensus 242 ~P~~-nl---~l-~gr~d----~~P~~RgvtpV~eL~~~---G-V~Va~G~Dni-------~Dpw~P~G~gDmL~~~~l~ 301 (328)
T PRK06886 242 CPMA-WI---DS-NRKED----LMPFHNALTPADEMIPE---G-ITVAIGTDNI-------CDYMVPLCEGDMWQELSLL 301 (328)
T ss_pred CCHH-HH---HC-CCCCC----CCCCCCCCCCHHHHHHC---C-CEEEEECCCC-------CCCCCCCCCCCHHHHHHHH
T ss_conf 8125-75---50-68778----78877888889999977---9-9599815788-------7888699776499999999
Q ss_pred HHHHHCCCCHHHHHHHHHHCCHHHCCCC
Q ss_conf 9997206999999999824317881889
Q gi|254781012|r 275 AQIFEEENKLENLESFVSINGATWYGIP 302 (349)
Q Consensus 275 ~~~~~~~~~L~~l~~~~s~npa~~~gl~ 302 (349)
+++. +...++.+.++.|.||||++||.
T Consensus 302 ~~~~-~~~~~e~~~~~~T~n~ak~lgl~ 328 (328)
T PRK06886 302 AAGC-RFPNLEEMVNIASINGRKVLGLE 328 (328)
T ss_pred HHHH-CCCCHHHHHHHHCCCHHHHHCCC
T ss_conf 9983-65889999888603288873889
No 79
>COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism]
Probab=98.73 E-value=1.4e-05 Score=53.93 Aligned_cols=272 Identities=14% Similarity=0.061 Sum_probs=143.7
Q ss_pred CEEEECCCCEEEEECCCH--HHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEE----
Q ss_conf 655864664237508817--88987498741887399983895148989899999999999838688469950134----
Q gi|254781012|r 2 KKISLRVPDDWHLHLRDG--EILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTI---- 75 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Reg--~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~---- 75 (349)
.+++.||+||.|+|.-=. .-.+-.++.+.-|+|||+.=|--.=.+--.+.++...+.+++ .+.++.+ ..+++
T Consensus 72 g~yivPGfID~H~HIESSm~tP~~FA~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~-~pl~~~~-~~pScVPat 149 (584)
T COG1001 72 GRYIVPGFIDAHLHIESSMLTPSEFARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKE-TPLKVYV-MLPSCVPAT 149 (584)
T ss_pred CCEECCCEECCCEECCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHCCHHHHHHHHHHHHH-CCEEEEE-ECCCCCCCC
T ss_conf 98865661103210100366899999886517855896172898761368899999987752-9768999-666676677
Q ss_pred -EEC--CCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHH
Q ss_conf -527--89998899874406872102210455100256541006889999999987398222025755555430014676
Q gi|254781012|r 76 -YLT--ETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELM 152 (349)
Q Consensus 76 -~lt--~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~ 152 (349)
+-+ ...+.+.+.+...-..+.++...+... .=+..+..+...++...+.++++--||=- +..
T Consensus 150 ~~Et~Ga~l~a~~i~e~~~~p~Vigl~E~Mn~p-----gVi~~D~~~l~kl~a~~~~~k~VdGHapg--l~g-------- 214 (584)
T COG1001 150 PFETSGAELTAEDIKELLEHPEVIGLGEMMNFP-----GVIEGDPDMLAKLEAARKAGKPVDGHAPG--LSG-------- 214 (584)
T ss_pred CCCCCCCEECHHHHHHHHHCCCCCCHHHHCCCC-----HHCCCCHHHHHHHHHHHHCCCEECCCCCC--CCH--------
T ss_conf 534678460399999986287714235532771-----02159888999999998749853464899--980--------
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf 54578999996206953997057858999998705733202302310039788613788831132134699999999999
Q gi|254781012|r 153 FIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRK 232 (349)
Q Consensus 153 ~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ 232 (349)
..+..+.+ .|.+---.-.|-.+.++-+|.|..+-. . -|+. ..|-.+|..
T Consensus 215 ---~~Ln~Y~a--aGi~tDHE~~t~EEa~~klr~Gm~i~i--------------R---eGS~---------a~dl~~l~~ 263 (584)
T COG1001 215 ---KELNAYIA--AGISTDHESTTAEEALEKLRLGMKIMI--------------R---EGSA---------AKDLAALLP 263 (584)
T ss_pred ---HHHHHHHH--CCCCCCCCCCCHHHHHHHHHCCCEEEE--------------E---CCCH---------HHHHHHHHH
T ss_conf ---78888985--388867654999999999957868999--------------8---5741---------550999999
Q ss_pred HHHCCC-CEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC-------CC
Q ss_conf 997699-4189713888653133215457754454367999999997206999999999824317881889-------88
Q gi|254781012|r 233 AALSGN-PRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIP-------VN 304 (349)
Q Consensus 233 ai~~G~-i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~-------~~ 304 (349)
++.+-. -..++.||-..=..--++. ..--++-...+.++.--..++..|.|||+.|||+ +.
T Consensus 264 ~i~e~~~~~~~lcTDD~~p~dl~~eG-----------hld~~vR~Ai~~Gv~p~~a~qmAtiN~A~~~gl~~~G~iAPG~ 332 (584)
T COG1001 264 AITELGSRRVMLCTDDRHPDDLLEEG-----------HLDRLVRRAIEEGVDPLDAYQMATINPAEHYGLDDLGLIAPGR 332 (584)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHCC-----------CHHHHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCC
T ss_conf 97614886189987999856766527-----------7999999999829998999988750799871975566416886
Q ss_pred CCEEEEEECCCCEEECHHHCCCCCCEEECC
Q ss_conf 852899947971784711226777714657
Q gi|254781012|r 305 TRKISLKRREQPIIFDEKITTSTGSITIFN 334 (349)
Q Consensus 305 ~~~i~l~d~~~~~~v~~~~~~sk~~~tpF~ 334 (349)
.+||++++-=+.+. -..-+++|++.-.+
T Consensus 333 ~ADlvi~~DL~~~~--v~~V~~~G~~v~~~ 360 (584)
T COG1001 333 RADLVILEDLRNFK--VTSVLIKGRVVAED 360 (584)
T ss_pred CCCEEEECCCCCCC--EEEEEECCEEEECC
T ss_conf 23489972434583--26999899998438
No 80
>PRK06687 chlorohydrolase; Validated
Probab=98.69 E-value=4.6e-06 Score=56.90 Aligned_cols=171 Identities=9% Similarity=0.012 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHCCCE---EEEECCCHHHHHHHHHHCCCC
Q ss_conf 068899999999873982220257555554300146765457899999-6206953---997057858999998705733
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLR-NKLPNLK---IILEHITTSNGIDYVNNATNI 190 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~-a~~~~~~---iHi~HiST~~sv~lir~ak~v 190 (349)
..+.+..+.+.+++.+.++.+|.......... ....+..+..+.+. ....+.+ .|-.|++ .+.++++++.. +
T Consensus 194 s~~~l~~~~~~a~~~~~~~~~H~~e~~~e~~~--~~~~~G~~p~~~l~~~G~l~~~~~~aH~~~~~-~~e~~~la~~g-~ 269 (422)
T PRK06687 194 STELLEECARIAVENQTMVHIHLSETEREVRD--IEAQYGKRPVEYLASCGLFKRPTVIAHGVVLN-ENERAFLAEHD-V 269 (422)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH--HHHHHCCCHHHHHHHCCCCCCCCCEEEEEECC-HHHHHHHHHCC-C
T ss_conf 99999999999997198499996452568999--99983988589998679878652031035235-06779999759-7
Q ss_pred CEEEECC-CCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHH
Q ss_conf 2023023-100397886137888311321346999999999999976994189713888653133215457754454367
Q gi|254781012|r 191 AGSITVH-HLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARN 269 (349)
Q Consensus 191 taEVTPH-HL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~ 269 (349)
..-.||. .+.+ . .+. ||+ .+.+..|.. -.+|||..+-.. ...++..--
T Consensus 270 ~v~~~P~sn~~l------~--~g~-----~pv---------~~l~~~Gv~-v~LGtD~~~~~~--------~~d~~~~mr 318 (422)
T PRK06687 270 RVAHNPNSNLKL------G--SGI-----ANV---------KAMLEAGVK-VGIATDSVASNN--------NLDMFEEMR 318 (422)
T ss_pred EEEECCCCHHHC------C--CCC-----CCH---------HHHHHCCCC-EEEECCCCCCCC--------CCCHHHHHH
T ss_conf 178675206542------7--788-----779---------999876994-898468877898--------667999999
Q ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHCCHHHCCCC-------CCCCEEEEEECC-CCEEEC
Q ss_conf 9999999972---06999999999824317881889-------888528999479-717847
Q gi|254781012|r 270 ALNCLAQIFE---EENKLENLESFVSINGATWYGIP-------VNTRKISLKRRE-QPIIFD 320 (349)
Q Consensus 270 ~~~~~~~~~~---~~~~L~~l~~~~s~npa~~~gl~-------~~~~~i~l~d~~-~~~~v~ 320 (349)
...++..... ...+.+++.++.+.|+|+.+|++ +.++||+++|+. .+...+
T Consensus 319 ~a~~~~~~~~~~~~~~~~~~~l~~AT~~gA~alg~d~iGsLe~Gk~ADlvi~d~~~~~~~~p 380 (422)
T PRK06687 319 IATLLQKGIHQDATALPVETALKLATKGAAEVIGMKQTGSLEVGKCADFITIDPSNKPHLQP 380 (422)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 99999987518986789999999999999998499877877857785799998999867788
No 81
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=98.67 E-value=3.2e-06 Score=57.91 Aligned_cols=171 Identities=13% Similarity=0.061 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHCCCEEEEECCC--HHHHHHHHHHCCCCC
Q ss_conf 068899999999873982220257555554300146765457899-99962069539970578--589999987057332
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILD-PLRNKLPNLKIILEHIT--TSNGIDYVNNATNIA 191 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~-~~~a~~~~~~iHi~HiS--T~~sv~lir~ak~vt 191 (349)
..+.+.++.+.+.+.+.++.+|.-........ ....+..+... +......+.++.+.|.. +.+.++++++. .++
T Consensus 203 s~~~l~~~~~~a~~~~~~~~~HlaE~~~e~~~--~~~~~g~~~v~~l~~~GlL~~~~~~aH~v~l~d~ei~~la~~-g~~ 279 (442)
T PRK07203 203 SDAGLEKCREAVKGTGRGLHIHVAEGLYDVSD--SHHKYGKDIVERLADFGLLGSKTLAAHCIYLSKDEIDLLNET-DTF 279 (442)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEHHCCHHHHHH--HHHHHCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHC-CCE
T ss_conf 99999999999986499477503037088999--998719999999984488899968872516999999999983-984
Q ss_pred EEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHH
Q ss_conf 02302310039788613788831132134699999999999997699418971388865313321545775445436799
Q gi|254781012|r 192 GSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNAL 271 (349)
Q Consensus 192 aEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~ 271 (349)
.-.||- + ...-+ .| -||++ +.+..|-- --||||-+.. .++..--..
T Consensus 280 v~hcP~----S--n~~lg-~G-----~~p~~---------~~~~~Gv~-vgLGTDg~~~------------dm~~emr~a 325 (442)
T PRK07203 280 VVHNPE----S--NMGNA-VG-----YNPVL---------SMIKNGIL-LGLGTDGYTS------------DMFESMKVA 325 (442)
T ss_pred EEECCH----H--HHHCC-CC-----CCCHH---------HHHHCCCC-EEEECCCCCC------------CHHHHHHHH
T ss_conf 798810----2--64267-78-----88899---------99977997-8996899876------------799999999
Q ss_pred HHHHHHHHCC-CCH-HHHHHHHHHCCHHHCCC----------CCCCCEEEEEECCCCEEECHH
Q ss_conf 9999997206-999-99999982431788188----------988852899947971784711
Q gi|254781012|r 272 NCLAQIFEEE-NKL-ENLESFVSINGATWYGI----------PVNTRKISLKRREQPIIFDEK 322 (349)
Q Consensus 272 ~~~~~~~~~~-~~L-~~l~~~~s~npa~~~gl----------~~~~~~i~l~d~~~~~~v~~~ 322 (349)
.++....... ..+ .....+.+.|+++..+. ++.++||+++|.+.+...+..
T Consensus 326 ~~~~r~~~~d~~~~~~~~~~~at~~ga~~~~~~l~~~iGsL~~Gk~ADlv~id~~~~~~~p~~ 388 (442)
T PRK07203 326 NFKHKHALKDGGPLWPESFAMLFENNNEIASRNFGAKFGLLEEGYKADLIIVDYNPPTPLNAD 388 (442)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCCCCCC
T ss_conf 999755237988780999999999999999764278831027877247899859998567867
No 82
>TIGR03314 Se_ssnA putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown.
Probab=98.65 E-value=6.4e-06 Score=56.06 Aligned_cols=169 Identities=12% Similarity=0.056 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHHCCCEE---EEECCCHHHHHHHHHHCCCC
Q ss_conf 068899999999873982220257555554300146765457899-99962069539---97057858999998705733
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILD-PLRNKLPNLKI---ILEHITTSNGIDYVNNATNI 190 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~-~~~a~~~~~~i---Hi~HiST~~sv~lir~ak~v 190 (349)
....+..+-+.+.+.+.++.+|......... .....+-.+... +......+.+. |-.|+| .+.++++++. .+
T Consensus 202 s~~~l~~~~~~a~~~~~~~~~Hl~E~~~e~~--~~~~~~G~~pv~~l~~~GlL~~~~~~aH~v~l~-~~ei~lla~~-G~ 277 (441)
T TIGR03314 202 SDAGLEMCREAVQATGRGFHIHVAEDIYDVE--DSHHKYGKDIVERLADFGLLGSKTLAAHCIYLS-DREIELLNET-DT 277 (441)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCHHHHH--HHHHHHCCCHHHHHHHCCCCCCCCEEECCCCCC-HHHHHHHHHC-CC
T ss_conf 9999999999987559918863114418899--999870998899998528889995674476699-9999999982-98
Q ss_pred CEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHH
Q ss_conf 20230231003978861378883113213469999999999999769941897138886531332154577544543679
Q gi|254781012|r 191 AGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNA 270 (349)
Q Consensus 191 taEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~ 270 (349)
+.-.||- ....-+ .| -||++ +.+..|-- --||||-+.. .++..--.
T Consensus 278 ~vahcP~------Sn~~lg-~G-----~~p~~---------~~l~~Gv~-v~LGTDg~~~------------dm~~~mr~ 323 (441)
T TIGR03314 278 FVVHNPE------SNMGNA-VG-----YNPVL---------RMFKNGIL-LGLGTDGYTS------------DMFESLKF 323 (441)
T ss_pred EEEECHH------HHHHCC-CC-----CCCHH---------HHHHCCCC-EEEECCCCCC------------CHHHHHHH
T ss_conf 2887735------564257-89-----99889---------99978998-8998989861------------69999999
Q ss_pred HHHHHHHHHCCC--CHHHHHHHHHHCCHHHCC---------C-CCCCCEEEEEECCCCEEECH
Q ss_conf 999999972069--999999998243178818---------8-98885289994797178471
Q gi|254781012|r 271 LNCLAQIFEEEN--KLENLESFVSINGATWYG---------I-PVNTRKISLKRREQPIIFDE 321 (349)
Q Consensus 271 ~~~~~~~~~~~~--~L~~l~~~~s~npa~~~g---------l-~~~~~~i~l~d~~~~~~v~~ 321 (349)
..++.....+.. .-......+..++++..+ | ++.++||+++|.+.+--.+.
T Consensus 324 a~~~~r~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~iGsL~~Gk~ADlv~~d~~~p~~~~~ 386 (441)
T TIGR03314 324 ANFKHKDAGGDLNAAWPESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTA 386 (441)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCCCCC
T ss_conf 999977636997667479999999999999975437872513787605789994999865786
No 83
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=98.53 E-value=6.7e-06 Score=55.90 Aligned_cols=273 Identities=17% Similarity=0.112 Sum_probs=145.2
Q ss_pred HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHH------HHHHHCCCEEEHHHC
Q ss_conf 74188739998389514898989999999999983868846995013452789998899------874406872102210
Q gi|254781012|r 28 DTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTETTDPDDV------EKGFTSQLVQAIKLY 101 (349)
Q Consensus 28 a~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~~~~~~------~~~~~~~~~~~~k~~ 101 (349)
..+-|+|+|.+|-- + ..+......|+.. .. .....+.+... +.......+. ........+..+|+|
T Consensus 219 l~s~GiT~v~d~~~--~-~~~~~~~~~~r~~-~~--~~~l~~rv~~~--l~~~~~~~~~~~~~~~~~~~~~~~~g~~K~f 290 (535)
T COG1574 219 LNSLGITGVHDMAG--Y-QGYYADYEAYRAL-AA--GGELPVRVALL--LFTEDLKEERLDLLRQTGAKGLLQGGGVKLF 290 (535)
T ss_pred HHHCCCEEEECCCC--C-CCCHHHHHHHHHH-HH--CCCCEEEEEEE--CCCCCHHHHHHHHCCCCCCCCEEECCCEEEE
T ss_conf 98569728874510--1-3535379999998-74--58614899852--2564133677751355777554642765899
Q ss_pred CCCCEEC---------------CCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH---
Q ss_conf 4551002---------------5654100688999999998739822202575555543001467654578999996---
Q gi|254781012|r 102 FAGSTTN---------------SHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRN--- 163 (349)
Q Consensus 102 ~~~~~~~---------------~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a--- 163 (349)
..|+.+. ++..+.+.+.+.+..+.+.+.|.++.+||= .+. .++..++...+
T Consensus 291 ~Dgslg~rtA~l~~~y~d~~~~~G~~l~~~e~l~~~v~~a~~~gl~v~vHAi-----GD~------Av~~~LdafE~~~~ 359 (535)
T COG1574 291 ADGSLGERTALLAAPYADGPGPSGELLLTEEELEELVRAADERGLPVAVHAI-----GDG------AVDAALDAFEKARK 359 (535)
T ss_pred EECCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE-----CHH------HHHHHHHHHHHHHH
T ss_conf 8578774112015865578898886354999999999999977991799981-----669------99999999998765
Q ss_pred H--HCCCEEEEECCCHHHHHHHHHH-CCCCCEEEECCCCCCCHHHHHCCCCCC-CEEECCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 2--0695399705785899999870-573320230231003978861378883-11321346999999999999976994
Q gi|254781012|r 164 K--LPNLKIILEHITTSNGIDYVNN-ATNIAGSITVHHLIINRNAIFHDGLNP-HYYCLPIPKREKHRLSLRKAALSGNP 239 (349)
Q Consensus 164 ~--~~~~~iHi~HiST~~sv~lir~-ak~vtaEVTPHHL~lt~~d~~~~~~~~-~~k~nPPlR~~~dr~aL~~ai~~G~i 239 (349)
. ..+.|..|.|++.-.-=++-|- ...+.+.+-|+|++...+.+. ..+|. ..+-++|+|+ .++.|.+
T Consensus 360 ~~~~~~~r~rieH~~~v~~~~i~R~~~Lgv~~svQP~f~~~~~~~~~-~rlG~~r~~~~~p~~~---------ll~~G~~ 429 (535)
T COG1574 360 KNGLKGLRHRIEHAELVSPDQIERFAKLGVIASVQPNFLFSDGEWYV-DRLGEERASRSYPFRS---------LLKAGVP 429 (535)
T ss_pred HCCCCCCCCEEEEEEECCHHHHHHHHHCCCEEEECCCCCCCCCHHHH-HHHHHHHHHCCCCHHH---------HHHCCCE
T ss_conf 35776677615465406876789999639458613630025226889-7650565531771999---------9978986
Q ss_pred EEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHH---HHH--HCCCCHHHHHHHHHHCCHHHCCCC--------CCCC
Q ss_conf 189713888653133215457754454367999999---997--206999999999824317881889--------8885
Q gi|254781012|r 240 RFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLA---QIF--EEENKLENLESFVSINGATWYGIP--------VNTR 306 (349)
Q Consensus 240 ~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~---~~~--~~~~~L~~l~~~~s~npa~~~gl~--------~~~~ 306 (349)
...|||- |=. ++. +..++..++..-. .+. +..+++..-....+.|+|...|.. +..+
T Consensus 430 -la~gSD~-Pv~------~~d--P~~~i~~AVtr~~~~g~~~~~~~~L~~~eAL~~yT~~~A~a~~~e~~~G~Le~G~~A 499 (535)
T COG1574 430 -LAGGSDA-PVE------PYD--PWLGIYAAVTRKTPGGRVLGPEERLTREEALRAYTEGGAYASGAEGEKGSLEPGKLA 499 (535)
T ss_pred -EECCCCC-CCC------CCC--HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf -7326889-998------887--389999998288877877760025679999999863047862044652022467520
Q ss_pred EEEEEECCCCEEECHHHCC-CCCCEEECCCCEEECC
Q ss_conf 2899947971784711226-7777146579769833
Q gi|254781012|r 307 KISLKRREQPIIFDEKITT-STGSITIFNPIFPLYW 341 (349)
Q Consensus 307 ~i~l~d~~~~~~v~~~~~~-sk~~~tpF~~g~~l~w 341 (349)
|+++.|. .+|++++..+. -|...|.|. |+.+|-
T Consensus 500 D~~Vld~-d~f~~~~~~i~~~~v~~T~~~-Gk~VY~ 533 (535)
T COG1574 500 DFAVLDR-DPFTVDPDSIKDTKVVLTIVA-GKVVYR 533 (535)
T ss_pred EEEEECC-CCCCCCHHHHCCCEEEEEEEC-CEEEEC
T ss_conf 0888747-745599677111157999975-768642
No 84
>pfam04909 Amidohydro_2 Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.
Probab=98.48 E-value=0.00012 Score=48.13 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=100.8
Q ss_pred HHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89987440687210221045510025654100688999999998739822202575555543001467654578999996
Q gi|254781012|r 84 DDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRN 163 (349)
Q Consensus 84 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a 163 (349)
+++.+......+.++++.+... +....+.....+.++.+++.|.++.+|+......... .......+.-.+.
T Consensus 87 ~el~r~~~~~g~~Gv~l~~~~~----~~~~~~~~~~~~~~~~~~e~~~pv~iH~~~~~~~~~~----~~~~~~~~~~~~~ 158 (270)
T pfam04909 87 AELERRLAELGFRGVRLNPHPG----GGPLLDPRLDRPIYEALAELGLPVDLHTGTGFAGEDT----DASQPLLLEGLAR 158 (270)
T ss_pred HHHHHHCCCCCEEEEEECCCCC----CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC----CCCCHHHHHHHHH
T ss_conf 9999974838806999768578----8777666889999999998699899945888776564----6136999999999
Q ss_pred HHCCCEEEEECCCH-----HHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 20695399705785-----8999998705733202302310039788613788831132134699999999999997699
Q gi|254781012|r 164 KLPNLKIILEHITT-----SNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGN 238 (349)
Q Consensus 164 ~~~~~~iHi~HiST-----~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~ 238 (349)
+++++++.+.|.-. .+.+.++.+..++.++++...-.. ..++.....--+.+++.+ |-
T Consensus 159 ~~P~l~iv~~H~G~~~~~~~~~~~~~~~~~nv~~~~s~~~~~~---------------~~~~~~~~~~~~~~~~~~--g~ 221 (270)
T pfam04909 159 RFPDLKIVLDHAGGPWIGWREALALLARRPNVYVKLSGLYRDS---------------PDPPAADPPALAELIEAF--GP 221 (270)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCC---------------CCCCCCCHHHHHHHHHHH--CC
T ss_conf 7899859997898885649999999986995798511032346---------------786201799999999987--99
Q ss_pred CEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCC
Q ss_conf 418971388865313321545775445436799999999720699999999982431788188
Q gi|254781012|r 239 PRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGI 301 (349)
Q Consensus 239 i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl 301 (349)
-..+.|||- ||...+- . ... . .... .....+-+...+.+..|++|+|||
T Consensus 222 drvmfGSD~-P~~~~~~----~----~~~---~-~~~~-~~~~ls~~~~~~i~~~NA~rl~~l 270 (270)
T pfam04909 222 DRILFGSDY-PHPPLER----P----LAA---L-DLLD-LLDALSEEEREKILGGNAARLYGL 270 (270)
T ss_pred CEEEEECCC-CCCCCCC----C----HHH---H-HHHH-HHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 929995799-9998656----8----779---9-9998-622999999999997889998582
No 85
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=98.39 E-value=4.7e-05 Score=50.70 Aligned_cols=75 Identities=21% Similarity=0.118 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC--
Q ss_conf 999999999976994189713888653133215457754454367999999997206999999999824317881889--
Q gi|254781012|r 225 KHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIP-- 302 (349)
Q Consensus 225 ~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~-- 302 (349)
+-+-+-.+.+..|-. |+++||--|.+.= ...+- | .-....+|.+-+.+.|.|||+..||.
T Consensus 234 sGNvsA~elv~~gl~-diL~SDY~p~SLL--------------~Aaf~-L--~~~~~~~L~~A~~lVS~nPA~a~gL~DR 295 (325)
T cd01306 234 SGNVSARELAAHGLL-DILSSDYVPASLL--------------HAAFR-L--ADLGGWSLPEAVALVSANPARAVGLTDR 295 (325)
T ss_pred CCCHHHHHHHHCCCC-CEECCCCCCHHHH--------------HHHHH-H--HHCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 886239999977897-6871078867899--------------99999-9--8737999999999985659988699656
Q ss_pred -----CCCCEEEEEECCCCE
Q ss_conf -----888528999479717
Q gi|254781012|r 303 -----VNTRKISLKRREQPI 317 (349)
Q Consensus 303 -----~~~~~i~l~d~~~~~ 317 (349)
+..+|+++|++...+
T Consensus 296 G~I~~G~RADLv~v~~~~~~ 315 (325)
T cd01306 296 GSIAPGKRADLILVDDMDGV 315 (325)
T ss_pred CCCCCCCCCCEEEEECCCCC
T ss_conf 66478862688999638997
No 86
>COG3964 Predicted amidohydrolase [General function prediction only]
Probab=98.34 E-value=8.5e-06 Score=55.28 Aligned_cols=264 Identities=14% Similarity=0.092 Sum_probs=128.4
Q ss_pred EEECCCCEEEEECCCHHHHHHH---HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCE--EEEEEEEEEC
Q ss_conf 5864664237508817889874---9874188739998389514898989999999999983868846--9950134527
Q gi|254781012|r 4 ISLRVPDDWHLHLRDGEILKTV---LRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYD--FSPLMTIYLT 78 (349)
Q Consensus 4 l~lp~~~D~HvH~Reg~~~~~t---~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~--~~~~~~~~lt 78 (349)
|+-||+||.|||.--+...-+. .-++.-|+|||+|---+- . ..+..+++-++++++.... ....+ .+++
T Consensus 54 ~VspG~iDlHvHvy~ggt~~~v~pd~~ga~~GvTTvVDAGSaG--a---anf~gF~r~vie~Sr~RI~Aflnvs~-~Gl~ 127 (386)
T COG3964 54 IVSPGLIDLHVHVYYGGTEGGVRPDMYGAPNGVTTVVDAGSAG--A---ANFDGFYRTVIEASRVRIKAFLNVSP-PGLT 127 (386)
T ss_pred EECCCEEEEEEEEECCCCCCCCCHHHCCCCCCCEEEEECCCCC--C---CCHHHHHHHHHCCHHHEEEEEEECCC-CCEE
T ss_conf 7536765445678438975674877706667834897267767--5---31356788754202340002452267-5312
Q ss_pred --------CCCCHHHHHHHHHC--CCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHH
Q ss_conf --------89998899874406--87210221045510025654100688999999998739822202575555543001
Q gi|254781012|r 79 --------ETTDPDDVEKGFTS--QLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFD 148 (349)
Q Consensus 79 --------~~~~~~~~~~~~~~--~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~ 148 (349)
++.+...+..+... ..+.++|.-.....+ ...|+ .-+..+++.+...+.|+++|-..|... +
T Consensus 128 a~nE~~d~~nid~d~i~aa~reh~d~ivGlKvR~s~~~~-g~~Gi---tPl~la~~ia~~~klPlmvHigePp~~---~- 199 (386)
T COG3964 128 ASNELYDPDNIDEDKIHAAFREHRDVIVGLKVRVSTEDI-GEYGI---TPLTLALRIANDLKLPLMVHIGEPPVL---M- 199 (386)
T ss_pred EEHHHCCHHHCCHHHHHHHHHHCCCCEEEEEEEEEECCC-CCCCC---CHHHHHHHHHHHCCCCEEEECCCCCCC---H-
T ss_conf 021008812389789999998585707877887540013-34687---657899999861599669965999962---8-
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-HHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHH
Q ss_conf 467654578999996206953997057858999-9987057332023023100397886137888311321346999999
Q gi|254781012|r 149 RELMFIDKILDPLRNKLPNLKIILEHITTSNGI-DYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHR 227 (349)
Q Consensus 149 ~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv-~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr 227 (349)
.|-..+-+.-+++.-++.|..--+ +.-.+.| ..++++...+.- | |+ +.....+-+| --|
T Consensus 200 dEvlerL~~GDIitHcfngkpn~~--l~~dg~vr~~vrra~erGV~-------f---D~--ghG~asfsf~------vAr 259 (386)
T COG3964 200 DEVLERLRRGDIITHCFNGKPNTI--LTDDGVVRAEVRRARERGVI-------F---DA--GHGRASFSFN------VAR 259 (386)
T ss_pred HHHHHHCCCCCEEEEECCCCCCCC--CCCCHHHHHHHHHHHHCCEE-------E---EC--CCCCCEEEHH------HHH
T ss_conf 889976357765654036999972--26625578999998756648-------9---72--4873202479------999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC-----
Q ss_conf 999999976994189713888653133215457754454367999999997206999999999824317881889-----
Q gi|254781012|r 228 LSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIP----- 302 (349)
Q Consensus 228 ~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~----- 302 (349)
. ++.+|---|+|+||=--|++- ..+++.+.+.++-++ .-..+|.++++..+.|||+..+|+
T Consensus 260 ~----aia~GllP~~ISSDlh~~~~~-------n~Pv~dla~~mSKll---algmpl~~Vi~avT~npA~~i~l~~~gtL 325 (386)
T COG3964 260 R----AIANGLLPDIISSDLHTITKL-------NGPVYDLAWIMSKLL---ALGMPLTDVINAVTHNPAVLIGLAEIGTL 325 (386)
T ss_pred H----HHHCCCCCCEEECCCEEEEEC-------CCHHHHHHHHHHHHH---HCCCCHHHHHHHHHCCHHHHHCCCCCCCC
T ss_conf 9----986577864232231035305-------761878999999998---72896899999985197877383223764
Q ss_pred --CCCCEEEEEECCC
Q ss_conf --8885289994797
Q gi|254781012|r 303 --VNTRKISLKRREQ 315 (349)
Q Consensus 303 --~~~~~i~l~d~~~ 315 (349)
+..+||+++++..
T Consensus 326 a~G~~aD~tvf~lk~ 340 (386)
T COG3964 326 APGAFADITVFKLKN 340 (386)
T ss_pred CCCCCCCEEEEEECC
T ss_conf 777513369999616
No 87
>COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only]
Probab=98.34 E-value=0.00017 Score=47.31 Aligned_cols=173 Identities=14% Similarity=0.153 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHCCCEEEEECCC--HHHHHHHHHHCCCCC
Q ss_conf 06889999999987398222025755555430014676545789999-962069539970578--589999987057332
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPL-RNKLPNLKIILEHIT--TSNGIDYVNNATNIA 191 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~-~a~~~~~~iHi~HiS--T~~sv~lir~ak~vt 191 (349)
..+.+..+.+.+++.|.++-+|+-......... .| .......+.+ .....+.+..+.|.. +.++++++++ ..++
T Consensus 196 ~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~-~~-~~g~~~~~~~~~~g~l~~~~~~~H~~~~~~~e~~~l~~-~g~~ 272 (421)
T COG0402 196 SPELLESLDELARKYGLPVHIHLAETLDEVERV-LE-PYGARPVERLDLLGLLGSHTLLAHCVHLSEEELELLAE-SGAS 272 (421)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH-HH-HHCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH-CCCE
T ss_conf 989999999999727993799816873278899-98-75024888886448657874999668799899999986-6985
Q ss_pred EEEEC-CCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHH
Q ss_conf 02302-31003978861378883113213469999999999999769941897138886531332154577544543679
Q gi|254781012|r 192 GSITV-HHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNA 270 (349)
Q Consensus 192 aEVTP-HHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~ 270 (349)
.-.|| --+.| +.- ..| +++.+..| +..-+|||-+.+.-. ...+. +..
T Consensus 273 v~~cP~sN~~L----------~sG--~~p----------~~~~~~~g-v~v~~gTD~~~~~~~--------~d~l~-~~~ 320 (421)
T COG0402 273 VVHCPRSNLKL----------GSG--IAP----------VRRLLERG-VNVALGTDGAASNNV--------LDMLR-EMR 320 (421)
T ss_pred EEECHHHHHHC----------CCC--CCC----------HHHHHHCC-CEEEEEEECCCCCCC--------CCHHH-HHH
T ss_conf 99884666434----------777--888----------89998546-828999724676786--------35689-999
Q ss_pred HHHHHH-HHH-CCCCHHH--HHHHHHHCCHHHCCC-------CCCCCEEEEEECCCCEEECHH
Q ss_conf 999999-972-0699999--999982431788188-------988852899947971784711
Q gi|254781012|r 271 LNCLAQ-IFE-EENKLEN--LESFVSINGATWYGI-------PVNTRKISLKRREQPIIFDEK 322 (349)
Q Consensus 271 ~~~~~~-~~~-~~~~L~~--l~~~~s~npa~~~gl-------~~~~~~i~l~d~~~~~~v~~~ 322 (349)
...++. +.. ...+... +.++.+.|+||.+|+ ++.++|++++|.+.+......
T Consensus 321 ~a~~l~~~~~~~~~~~~~~~~l~~aT~~gA~alg~~~~G~le~G~~ADlvvld~~~~~~~~~~ 383 (421)
T COG0402 321 TADLLQKLAGGLLAAQLPGEALDMATLGGAKALGLDDIGSLEVGKKADLVVLDASAPHLAPLR 383 (421)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 999998763456543103789999827899980897678706787168899868884100145
No 88
>PRK13309 ureC urease subunit alpha; Reviewed
Probab=98.22 E-value=0.00021 Score=46.65 Aligned_cols=261 Identities=14% Similarity=0.155 Sum_probs=137.6
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC---CC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 5586466423750881788987498741887399983---89--514898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVM---PN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~M---PN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
.|+-+|+||.||||=-.... -.|.+.|+||.+-. |. |+-.+.|+-. +...+.+++.. ....++++ +
T Consensus 129 ~I~TAGgiDtHvHfi~Pqq~---~~AL~sGiTT~iGGGtGPa~Gt~att~TpG~--~~i~~ml~a~d-~~P~N~g~---~ 199 (572)
T PRK13309 129 LILTAAGIDSHIHLISPQQA---YHALSNGVATFFGGGIGPTDGTNGTTVTPGP--WNIRQMLRSIE-GLPVNVGI---L 199 (572)
T ss_pred EEEECCCCCCEEECCCHHHH---HHHHHCCCEEEECCCCCCCCCCCCCCCCCCH--HHHHHHHHHHH-CCCCCEEE---E
T ss_conf 16503653210000477889---9998568768756866787676663247977--99999997401-27710456---3
Q ss_pred CCCCC--HHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78999--8899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 78 TETTD--PDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 78 t~~~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
.+++. .+.+.+.... ...++|+- .|.|. .......+|..+-++|..+.+|...- +|+-+++
T Consensus 200 gKGn~s~~~~L~eqi~A-Ga~GlKiH-------EDWGa-TPa~Id~~L~vAde~DvQvaiHTDTL--------NE~GfvE 262 (572)
T PRK13309 200 GKGNSYGRGPLLEQAIA-GVVGYKVH-------EDWGA-TANALRHALRMADEVDIQVSVHTDSL--------NECGYVE 262 (572)
T ss_pred ECCCCCCHHHHHHHHHH-CCCCCCCC-------CCCCC-CHHHHHHHHHHHHHHCCEEEEECCCC--------CCCCCHH
T ss_conf 13667880779999972-42545454-------43479-88999988777886392689745876--------6545004
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHH---HHHHHHHCC--CC-----------CE----E-----EECCCCCCCH-HHHHCC
Q ss_conf 789999962069539970578589---999987057--33-----------20----2-----3023100397-886137
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTSN---GIDYVNNAT--NI-----------AG----S-----ITVHHLIINR-NAIFHD 209 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~~---sv~lir~ak--~v-----------ta----E-----VTPHHL~lt~-~d~~~~ 209 (349)
..++ ..-|-.+|.-|.--+. +-|+||-+. +| |. | ..+|||--+. +|+.
T Consensus 263 dTi~----Ai~gRtIHtyHtEGAGGGHAPDIi~v~g~~NVLPSSTNPT~PyT~NT~dEhlDMlMvcHhL~~~ipeDva-- 336 (572)
T PRK13309 263 DTID----AFEGRTIHTFHTEGAGGGHAPDIIRVASQTNVLPSSTNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVS-- 336 (572)
T ss_pred HHHH----HHCCCCEEEEECCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCHHHH--
T ss_conf 3588----7379721455305777787740401327777476789998887667145543848981488989820245--
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC------
Q ss_conf 888311321346999999999999976-9941897138886531332154577544543679999999972069------
Q gi|254781012|r 210 GLNPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN------ 282 (349)
Q Consensus 210 ~~~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~------ 282 (349)
+.---||.+ -.|-=+.|-| |-| -+++||..- .|-.| +.+.-.+++-...-..++
T Consensus 337 ------FAeSRIR~e--TIAAEDvLHDmGai-Si~sSDSQa---------MGRvG-Evi~RTWQtA~kMK~~rG~L~~d~ 397 (572)
T PRK13309 337 ------FAESRVRPE--TIAAENVLHDMGVI-SMFSSDSQA---------MGRVG-ENWLRILQTADAMKAARGKLPEDA 397 (572)
T ss_pred ------HHHHCCCCH--HHHHHHHHHCCCCE-EEECCCHHH---------CCCCC-CEEEHHHHHHHHHHHHCCCCCCCC
T ss_conf ------666345620--14566665205633-222260133---------26773-023014564988888608999888
Q ss_pred ------CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf ------99999999824317881889--------888528999479
Q gi|254781012|r 283 ------KLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 283 ------~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
..-|.+.+.+.|||...|+. +.-+||+|++|.
T Consensus 398 ~~nDN~RvkRYiAKyTINPAiahGis~~vGSvE~GKlADlVlW~Pa 443 (572)
T PRK13309 398 AGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWDPR 443 (572)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 8751888888666611175766175555356347862248753614
No 89
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=98.21 E-value=0.00051 Score=44.25 Aligned_cols=234 Identities=15% Similarity=0.082 Sum_probs=104.9
Q ss_pred CCEEEEECCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC---
Q ss_conf 6423750881----788987498741887399983895148989899999999999838688469950134527899---
Q gi|254781012|r 9 PDDWHLHLRD----GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTETT--- 81 (349)
Q Consensus 9 ~~D~HvH~Re----g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~--- 81 (349)
+||.|+||-+ ++...-...|...|++.++.+. ++.+......+ +....... .++.++.+..
T Consensus 1 lIDsHcHL~~~~~~~d~~~vi~~a~~~gv~~ii~~~------~~~~~~~~~~~--la~~~~~i----~~~~GiHP~~~~~ 68 (251)
T cd01310 1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVG------TDLKSSKRALE--LAKKYDNV----YAAVGLHPHDADE 68 (251)
T ss_pred CEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHHH--HHHHCCCE----EEEECCCHHHHHH
T ss_conf 978504889814446999999999986998899968------99999999999--99759986----8982368376512
Q ss_pred -C---HHHHHHHHHCCCEEEHHHCCCC-CEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf -9---8899874406872102210455-1002565410068899999999873982220257555554300146765457
Q gi|254781012|r 82 -D---PDDVEKGFTSQLVQAIKLYFAG-STTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDK 156 (349)
Q Consensus 82 -~---~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~ 156 (349)
. .+.+........+.+++.-+-. ....++. -.....+.+-++.+.++++|+++|+=+ ++....
T Consensus 69 ~~~~~~~~l~~~~~~~~~vaIGEiGLD~~~~~~~~-~~Q~~~F~~ql~lA~~~~lPv~iH~R~---------A~~~~l-- 136 (251)
T cd01310 69 HVDEDLDLLELLAANPKVVAIGEIGLDYYRDKSPR-EVQKEVFRAQLELAKELNLPVVIHSRD---------AHEDVL-- 136 (251)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH-HHHHHHHHHHHHHHHHHCCCEEEEECC---------CHHHHH--
T ss_conf 35779999999972899069985014888889989-999999999999998757884898645---------479999--
Q ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCC---CHHHHHHHHHH
Q ss_conf 899999620695399705785899999870573320230231003978861378883113213469---99999999999
Q gi|254781012|r 157 ILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPK---REKHRLSLRKA 233 (349)
Q Consensus 157 ~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR---~~~dr~aL~~a 233 (349)
+++.......+.+ .|-=|. +.+..++.... |.++=+++.+- ..+-|+ +.+.
T Consensus 137 --~iL~~~~~~~~~v-~H~fsG-~~~~a~~~l~~---------------------G~yisi~g~it~~~~~~~~~-~~~~ 190 (251)
T cd01310 137 --EILKEYGPPKRGV-FHCFSG-SAEEAKELLDL---------------------GFYISISGIVTFKNANELRE-VVKE 190 (251)
T ss_pred --HHHHHCCCCCCEE-EEECCC-CHHHHHHHHHC---------------------CEEEECCCCCCCCHHHHHHH-HHHH
T ss_conf --9999708887738-885689-99999986118---------------------90895374111424899999-9985
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHCCHHHCC
Q ss_conf 976994189713888653133215457754454367999999997--2069999999998243178818
Q gi|254781012|r 234 ALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIF--EEENKLENLESFVSINGATWYG 300 (349)
Q Consensus 234 i~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~--~~~~~L~~l~~~~s~npa~~~g 300 (349)
+-..- -++-||. |...-.+ ..|-.+.|..++.++... -+..+++.+.+.+..|..++||
T Consensus 191 iPldr--lllETDs-P~l~p~~-----~~g~~NeP~~i~~v~~~lA~i~~~~~~el~~~~~~N~~~lFG 251 (251)
T cd01310 191 IPLER--LLLETDS-PYLAPVP-----FRGKRNEPAYVKHVAEKIAELKGISVEEVAEVTTENAKRLFG 251 (251)
T ss_pred CCCCE--EEEECCC-CCCCCCC-----CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 99522--8982589-7778667-----799999728999999999988498999999999999998659
No 90
>PRK10027 cryptic adenine deaminase; Provisional
Probab=98.20 E-value=0.00053 Score=44.20 Aligned_cols=254 Identities=11% Similarity=0.066 Sum_probs=110.8
Q ss_pred CEEEECCCCEEEEECCCHHHH---HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE-
Q ss_conf 655864664237508817889---8749874188739998389514898989999999999983868846995013452-
Q gi|254781012|r 2 KKISLRVPDDWHLHLRDGEIL---KTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL- 77 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Reg~~~---~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l- 77 (349)
.+.++||+||.|+|+-- .+. +-.++++.-|.|||+.=|--.=.+.-.+.++...+. .+..+. .+++....+.
T Consensus 79 G~ylvPG~ID~H~HIES-smltP~efA~~vlp~GTTtvv~DpHEiaNV~G~~Gi~~ml~~-~~~~pl--~~~~~~pScVP 154 (588)
T PRK10027 79 GATAVPGFIDAHLHIES-SMMTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARC-AEQARQ--NQYLQVSSCVP 154 (588)
T ss_pred CCEECCCCCCCCCCCCC-CCCCHHHHHHHHHCCCCEEEECCCHHHHHHCCHHHHHHHHHH-HHHCCC--EEEECCCCCCC
T ss_conf 99877450247405604-232999999998735876997287899874388999999985-020774--05754565688
Q ss_pred -C-------CCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHH
Q ss_conf -7-------89998899874406872102210455100256541006889999999987398222025755555430014
Q gi|254781012|r 78 -T-------ETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDR 149 (349)
Q Consensus 78 -t-------~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~ 149 (349)
+ ...+.+++.+......+.++...+... .-+.....+..-++.+. ++.+--|+= ..
T Consensus 155 at~~~E~~Ga~~~~~~~~~~l~~~~V~gLgEvMn~p-----gV~~gd~~~l~ki~~~~--~~~idGHaP--gl------- 218 (588)
T PRK10027 155 ALEGCDVNGASFTLEQMLAWRDHPQVTGLAEMMDYP-----GVISGQNALLDKLDAFR--HLTLDGHCP--GL------- 218 (588)
T ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCC-----CEECCCHHHHHHHHHCC--CCCCCCCCC--CC-------
T ss_conf 888543577827999999986389843567513776-----42259888999999736--995136789--88-------
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHH
Q ss_conf 67654578999996206953997057858999998705733202302310039788613788831132134699999999
Q gi|254781012|r 150 ELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLS 229 (349)
Q Consensus 150 E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~a 229 (349)
....|..+.+ .|..---.-.|-.++++-+|.|..+.. . .++ + ..|-++
T Consensus 219 ----sg~~L~ay~a--aGi~sDHE~~t~eEa~eklr~Gm~v~i--------------R---egS-------~--~~~l~~ 266 (588)
T PRK10027 219 ----GGKELNAYIA--AGIENCHESYQLEEGRRKLQLGMSLMI--------------R---EGS-------A--ARNLNA 266 (588)
T ss_pred ----CHHHHHHHHH--CCCCCCCCCCCHHHHHHHHHCCCEEEE--------------C---CCC-------C--HHHHHH
T ss_conf ----8788999986--188732211779999999968997986--------------2---787-------4--254999
Q ss_pred HHHHHHCCC-CEEEEECCC-CCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCHHHCCCC----
Q ss_conf 999997699-418971388-86531332154577544543679999999972-06999999999824317881889----
Q gi|254781012|r 230 LRKAALSGN-PRFFLGTDS-APHWDSSKESSCGCAGIYTARNALNCLAQIFE-EENKLENLESFVSINGATWYGIP---- 302 (349)
Q Consensus 230 L~~ai~~G~-i~d~I~TDH-APH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~-~~~~L~~l~~~~s~npa~~~gl~---- 302 (349)
|..++.+-+ ..++++||- .|...-++ |- +.. ++-...+ +..+++.-+++.|.|||+.|||+
T Consensus 267 l~~~i~~~~~~~~~~~TDD~~p~dl~~~-------Gh--id~---~vr~AI~~gg~p~~~Ai~mATlN~A~~y~L~~~G~ 334 (588)
T PRK10027 267 LAPLINEFNSPQCMLCTDDRNPWEIAHE-------GH--IDA---LIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLGL 334 (588)
T ss_pred HHHHHHCCCCCCEEEECCCCCHHHHHHC-------CC--HHH---HHHHHHHHCCCCHHHHHHHHHCCHHHHCCCCCCCC
T ss_conf 9988623686553798499997899866-------87--999---99999997499989999862025998749855656
Q ss_pred ---CCCCEEEEEECCCCEEE
Q ss_conf ---88852899947971784
Q gi|254781012|r 303 ---VNTRKISLKRREQPIIF 319 (349)
Q Consensus 303 ---~~~~~i~l~d~~~~~~v 319 (349)
+..+||+++|--+.+.+
T Consensus 335 IAPGr~ADivll~dL~~~~v 354 (588)
T PRK10027 335 LAPGKQADIVLLSDARKVTV 354 (588)
T ss_pred CCCCCCCCEEEECCCCCCCC
T ss_conf 68998648899876666851
No 91
>TIGR02967 guan_deamin guanine deaminase; InterPro: IPR014311 This entry describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as more distantly related homologs which are not included in this entry. .
Probab=98.20 E-value=0.00031 Score=45.58 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=26.1
Q ss_pred CCHH--HHHHHHHHCCHHHCCCC--------CCCCEEEEEECCC
Q ss_conf 9999--99999824317881889--------8885289994797
Q gi|254781012|r 282 NKLE--NLESFVSINGATWYGIP--------VNTRKISLKRREQ 315 (349)
Q Consensus 282 ~~L~--~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~~ 315 (349)
-.|+ +..-+++.++|+.++|. +..+|++++|+..
T Consensus 345 ~~L~~~~~FYLATlGGA~aL~Ldd~IG~f~~G~eAD~~VlD~~A 388 (426)
T TIGR02967 345 TRLSPFEAFYLATLGGARALDLDDRIGNFEPGKEADFVVLDPAA 388 (426)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCEEECCCC
T ss_conf 60089999999887655510125655662310112502354025
No 92
>PRK10425 DNase TatD; Provisional
Probab=98.19 E-value=0.00055 Score=44.07 Aligned_cols=243 Identities=16% Similarity=0.080 Sum_probs=105.4
Q ss_pred CCEEEEECCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC---
Q ss_conf 6423750881----788987498741887399983895148989899999999999838688469950134527899---
Q gi|254781012|r 9 PDDWHLHLRD----GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTETT--- 81 (349)
Q Consensus 9 ~~D~HvH~Re----g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~--- 81 (349)
+||.|+||-+ +|...--..|..-||+.++. |.| +.+......+ +.....++ ..+.++.+..
T Consensus 1 liDtH~HL~~~~f~~d~~~vl~rA~~~gV~~ii~-~g~-----~~~~~~~~~~--la~~~~~v----~~~~GiHP~~~~~ 68 (258)
T PRK10425 1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGLLI-TGT-----NLRESQQAQK--LARQYPSC----WSTAGVHPHDSSQ 68 (258)
T ss_pred CEEEEECCCCHHHHCCHHHHHHHHHHCCCCEEEE-ECC-----CHHHHHHHHH--HHHHCCCC----EEEECCCCHHHHH
T ss_conf 9777758898777578999999999879998999-469-----9999999999--99868873----5983358123323
Q ss_pred -CH---HHHHHHHHCCCEEEHHHCCCCCEECCCCC--CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf -98---89987440687210221045510025654--1006889999999987398222025755555430014676545
Q gi|254781012|r 82 -DP---DDVEKGFTSQLVQAIKLYFAGSTTNSHHG--IRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 82 -~~---~~~~~~~~~~~~~~~k~~~~~~~~~~~~~--v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
.. +.+........+.+++.-+ .....+.. -.......+-++.+.++++|+++|+=+ +.....+
T Consensus 69 ~~~~~~~~l~~~~~~~~~vAIGEiG--LDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPviiH~R~---------A~~~~l~ 137 (258)
T PRK10425 69 WQAATEEAIIELAAQPEVVAIGECG--LDFNRNFSTPEEQERAFVAQLRIAAELNMPVFMHCRD---------AHERFLT 137 (258)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEECC--CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC---------CHHHHHH
T ss_conf 6857899999985489827996122--1677568999999999999999999979987999644---------1589999
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 78999996206953997057858999998705733202302310039788613788831132134699999999999997
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAAL 235 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~ 235 (349)
.... ......+.-+|--.=|-...-++++.|-.+ .|+ |.. +.. -|..+-|+.+-..=.
T Consensus 138 iL~~-~~~~~~~~v~HcFsGs~e~a~~~l~~G~yi---------s~~---------G~i--~~~-~~~~~lr~~v~~iPl 195 (258)
T PRK10425 138 LLEP-WLDKLPGAVLHCFTGTREEMQACVARGLYI---------GIT---------GWV--CDE-RRGLELRELLPLIPA 195 (258)
T ss_pred HHHH-HHCCCCCCEEEECCCCHHHHHHHHHCCCEE---------EEC---------CCE--ECC-CCCHHHHHHHHHCCH
T ss_conf 9999-716686733430689999999999749289---------863---------612--036-430689999984998
Q ss_pred CCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHCCHHHCCC
Q ss_conf 6994189713888653133215457754454367999999997--20699999999982431788188
Q gi|254781012|r 236 SGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIF--EEENKLENLESFVSINGATWYGI 301 (349)
Q Consensus 236 ~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~--~~~~~L~~l~~~~s~npa~~~gl 301 (349)
| . -.+-||. |...-....+. ..|--..|.-++.+++.. -++.+++.+.+.++.|..|+|||
T Consensus 196 d-r--lLlETDs-Pyl~P~~~~~k-~~~~rNeP~~v~~v~~~iA~l~~~~~eela~~t~~Na~~lF~l 258 (258)
T PRK10425 196 E-K--LLIETDA-PYLLPRDLTPK-PSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANARTLFGI 258 (258)
T ss_pred H-H--EEEECCC-CCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 7-9--7983558-88888677899-8999877068999999999775969999999999999998493
No 93
>PRK06846 deaminase; Validated
Probab=98.18 E-value=0.00059 Score=43.87 Aligned_cols=289 Identities=13% Similarity=0.053 Sum_probs=140.8
Q ss_pred CEEEECCCCEEEEECCC-----------------HHHH------H---H---------HHHHHCCCCEEEEECCCCCCCC
Q ss_conf 65586466423750881-----------------7889------8---7---------4987418873999838951489
Q gi|254781012|r 2 KKISLRVPDDWHLHLRD-----------------GEIL------K---T---------VLRDTAKNFRRALVMPNIDPPI 46 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Re-----------------g~~~------~---~---------t~aa~aGG~TtV~~MPNT~Ppi 46 (349)
.+|++|+++|+|+||-. +-+. . . -.-+++-|.|.|=.-=|..|.+
T Consensus 62 G~LvlP~fvd~H~HLDKt~~g~~W~~~~~~~~~~~~i~~e~~~~~~~~~~v~~Ra~~~l~~~~a~Gtt~iRTHvDvdp~~ 141 (410)
T PRK06846 62 GLLMLPAFREMHIHLDKTYYGGPWRACTPAKTIQTRIKLEQKELPKLLPTTQERAEKLIELLLSNGATIIRSHCNIDPVI 141 (410)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 98878786774067563021588656888866999999787653402104999999999999973906187655447751
Q ss_pred --CCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHH
Q ss_conf --898999999999998386884699501345278999889987440687210221045510025654100688999999
Q gi|254781012|r 47 --ITVDDACAYRQRILNALPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLE 124 (349)
Q Consensus 47 --~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le 124 (349)
.+.+.+.+.+++...... ......+--++......+.+.++...+.-....+-+.. .| + .-...+..+|+
T Consensus 142 gl~~lea~~~~~e~~~~~i~--lqiVAFPQ~Gll~~~~~~Ll~eAl~~Gad~vGGvdP~~----~d-~-d~~~~L~~~f~ 213 (410)
T PRK06846 142 GLKNLENTQAALERYQDGFE--YEIVAFPQHGLLRSNSEPLMREAMQMGAHLVGGVDPAT----VD-G-AIEKSLDTMFQ 213 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHC--EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCC----CC-C-CHHHHHHHHHH
T ss_conf 13589999999998442210--66897104675674479999999985896798437766----78-5-79999999999
Q ss_pred HHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH---------HHHHHHCC-CCCEEE
Q ss_conf 99873982220257555554300146765457899999620695399705785899---------99987057-332023
Q gi|254781012|r 125 RMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNG---------IDYVNNAT-NIAGSI 194 (349)
Q Consensus 125 ~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~s---------v~lir~ak-~vtaEV 194 (349)
.+.++|..|=+|+.+... .....+....+...+...+.|+-+.|..+-.. +++++++. .|.. +
T Consensus 214 LA~~~~~~vD~HldE~~d------~~~~~l~~la~~t~~~g~~grVt~sH~~sL~~~~~~~~~~~~~~la~agI~vvs-t 286 (410)
T PRK06846 214 IAVEFNKGVDIHLHDTNP------LGVATIKKLVETTEEAQWKGRVTISHAFALGDLNEEEVEELAERLAAQQISITS-T 286 (410)
T ss_pred HHHHCCCCCEEEECCCCC------HHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCEEEE-E
T ss_conf 999809992363158898------477899999999998299898883734446439999999999999985993998-5
Q ss_pred ECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 02310039788613788831132134699999999999997699418971388865313321545775445436799999
Q gi|254781012|r 195 TVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCL 274 (349)
Q Consensus 195 TPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~ 274 (349)
+| .+ +--||++ .| ...| |...+|||-- ..+|.+.|-....-...++
T Consensus 287 ~P-----------~~------r~v~pv~------eL---~~aG-V~V~~g~Dni-------~Dpw~P~G~gD~Le~a~~~ 332 (410)
T PRK06846 287 VP-----------IG------RLHMPLP------LL---HEKG-VKVSLGTDSV-------TDHWSPFGTGDMLEKANLY 332 (410)
T ss_pred CC-----------CC------CCCCCHH------HH---HHCC-CEEEEECCCC-------CCCCCCCCCCCHHHHHHHH
T ss_conf 89-----------98------9978799------99---9769-9199826888-------6898788888899999999
Q ss_pred HHHHHCC--CCHHHHHHHHHHCCHHH--CC----C-CCCCCEEEEEECCCCEEECHHHC-CCCCCEEECCCCEEECCEE
Q ss_conf 9997206--99999999982431788--18----8-98885289994797178471122-6777714657976983388
Q gi|254781012|r 275 AQIFEEE--NKLENLESFVSINGATW--YG----I-PVNTRKISLKRREQPIIFDEKIT-TSTGSITIFNPIFPLYWEV 343 (349)
Q Consensus 275 ~~~~~~~--~~L~~l~~~~s~npa~~--~g----l-~~~~~~i~l~d~~~~~~v~~~~~-~sk~~~tpF~~g~~l~w~V 343 (349)
+..+.-. -.|.+...+.+.+.+.+ +| + .+..+|++++|-.... +-.- .+..+.+... |+-+.+.+
T Consensus 333 a~~~~~~~~~~l~~~~~~~T~~~~~L~~~g~~~~~~vG~~AdlVl~~A~~~~---eavar~~~~r~Vi~~-GrvVa~~~ 407 (410)
T PRK06846 333 AERYRWIDEQSLSRALALATGGVLPLNDEGERVWPKVGDDASFVLVDASCSA---EAVARQSPRTAVFHK-GQLVWGSL 407 (410)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCHH---HHHHCCCCCCEEEEC-CEEEEEEC
T ss_conf 9986899889999999865200234676665336789995538999389989---998528876299989-99998424
No 94
>PRK10812 putative metallodependent hydrolase; Provisional
Probab=98.12 E-value=0.00077 Score=43.18 Aligned_cols=239 Identities=15% Similarity=0.108 Sum_probs=105.1
Q ss_pred CCEEEEECCC-------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC--
Q ss_conf 6423750881-------7889874987418873999838951489898999999999998386884699501345278--
Q gi|254781012|r 9 PDDWHLHLRD-------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTE-- 79 (349)
Q Consensus 9 ~~D~HvH~Re-------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~-- 79 (349)
.||.|+||-+ +|...--..|..-||+.++.. .|.+ +......+ +.....+..+ +.++.+
T Consensus 3 liDtHcHLd~~~~~~~~~d~~~vl~~a~~~gV~~~i~~-g~~~-----~~~~~~~~--l~~~~~~i~~----a~GiHP~~ 70 (265)
T PRK10812 3 LVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAV-ATTL-----PGYLHMRD--LVGERDNVVF----SCGVHPLN 70 (265)
T ss_pred EEEECCCCCCCCCCCHHCCHHHHHHHHHHCCCCEEEEE-CCCH-----HHHHHHHH--HHHHCCCEEE----EEECCCCC
T ss_conf 89953589832154101399999999998699889995-3998-----99999999--9853998179----95048576
Q ss_pred ---CCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ---99988998744068721022104551002565410068899999999873982220257555554300146765457
Q gi|254781012|r 80 ---TTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDK 156 (349)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~ 156 (349)
..+.+.+........+.+++.-+-.-....+..-.......+-++.+.++++|+++|+-+ ++....
T Consensus 71 ~~~~~~~~~l~~l~~~~~vvAIGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPviiH~R~---------A~~d~~-- 139 (265)
T PRK10812 71 QDEPYDVEDLRRLAAEEGVVAMGETGLDYFYTPETKVRQQASFIHHIQIGRELNKPVIVHTRD---------ARADTL-- 139 (265)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC---------CHHHHH--
T ss_conf 686310999999851899389850579999999879999999999999999747986998554---------348999--
Q ss_pred HHHHHHHH-HCCCEEEEECC--CHHH-HHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHH
Q ss_conf 89999962-06953997057--8589-99998705733202302310039788613788831132134699999999999
Q gi|254781012|r 157 ILDPLRNK-LPNLKIILEHI--TTSN-GIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRK 232 (349)
Q Consensus 157 ~l~~~~a~-~~~~~iHi~Hi--ST~~-sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ 232 (349)
+++... ....+. +.|. .+.+ .-++++.|-. +.| ++.+--+ .-+.|++
T Consensus 140 --~iLk~~~~~~~~g-v~HcFsGs~e~a~~~l~lG~y---------is~----------------~g~it~~-~a~~lr~ 190 (265)
T PRK10812 140 --AILREEKVTDCGG-VLHCFTEDRETAGKLLDLGFY---------ISF----------------SGIVTFR-NAEQLRD 190 (265)
T ss_pred --HHHHHHCCCCCCE-EEECCCCCHHHHHHHHHCCCC---------EEE----------------CCCCCCC-HHHHHHH
T ss_conf --9999824777672-776078999999999964996---------635----------------6523310-5699999
Q ss_pred HHHCCCC-EEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHCCHHHCCCCCCC
Q ss_conf 9976994-1897138886531332154577544543679999999972--06999999999824317881889888
Q gi|254781012|r 233 AALSGNP-RFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFE--EENKLENLESFVSINGATWYGIPVNT 305 (349)
Q Consensus 233 ai~~G~i-~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~--~~~~L~~l~~~~s~npa~~~gl~~~~ 305 (349)
+++.=-. .-.+-||. |...-. +.-|-...|..++.++...- +..+++.+.+.++.|..|+|||+..+
T Consensus 191 ~~~~iPldrlLlETDs-Pyl~P~-----p~rg~~NeP~~i~~v~~~iA~i~~~~~eev~~~t~~Na~~lF~l~~~~ 260 (265)
T PRK10812 191 AARYVPLDRLLVETDS-PYLAPV-----PHRGKENQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASR 260 (265)
T ss_pred HHHHCCHHHEEEECCC-CCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 9985993557971478-877877-----779998977999999999998759899999999999999994998664
No 95
>cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=98.09 E-value=0.00031 Score=45.58 Aligned_cols=261 Identities=17% Similarity=0.174 Sum_probs=135.1
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC---CCC--CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 5586466423750881788987498741887399983---895--14898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVM---PNI--DPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~M---PNT--~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
.|+-+|+||.||||=-.... -.|.+.|+||.+-. |.+ +-.+.|+- .+...+.+++.. ....++++ +
T Consensus 125 ~I~TAGgiDtHvHfi~Pqq~---~~AL~sGiTT~iGGGtGPa~Gt~atT~TpG--~~~i~~ml~a~d-~~P~N~g~---l 195 (567)
T cd00375 125 KIVTAGGIDTHVHFICPQQI---EEALASGITTMIGGGTGPAAGTKATTCTPG--PWNIKRMLQAAD-GLPVNIGF---L 195 (567)
T ss_pred EEEECCCEEEEEEECCHHHH---HHHHHCCCEEEECCCCCCCCCCCCCCCCCC--HHHHHHHHHHHH-HCCCCEEE---E
T ss_conf 06732621678884388889---999865876763586678777776446897--799999998655-27721356---3
Q ss_pred CCCC--CHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7899--98899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 78 TETT--DPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 78 t~~~--~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
.+++ ..+.+.+.... ..+++|+- .|.|. .......+|..+-++|..+.+|...- +|+-+++
T Consensus 196 gKGn~s~~~~l~eqi~A-Ga~GlKiH-------EDWGa-Tpa~Id~~L~vAd~~DvQvaiHTDTL--------NE~GfvE 258 (567)
T cd00375 196 GKGNGSSPDALAEQIEA-GACGLKLH-------EDWGA-TPAAIDTCLSVADEYDVQVAIHTDTL--------NESGFVE 258 (567)
T ss_pred ECCCCCCHHHHHHHHHH-HHCCCCCC-------CCCCC-CHHHHHHHHHHHHHCCCEEEEECCCC--------CCCCHHH
T ss_conf 13666885789999986-53401112-------22478-77788887666665086045430554--------3232025
Q ss_pred HHHHHHHHHHCCCEEEEECCCHH---HHHHHHHHCC--CC-CEEE-------------------ECCCCCCCH-HHHHCC
Q ss_conf 78999996206953997057858---9999987057--33-2023-------------------023100397-886137
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTS---NGIDYVNNAT--NI-AGSI-------------------TVHHLIINR-NAIFHD 209 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~---~sv~lir~ak--~v-taEV-------------------TPHHL~lt~-~d~~~~ 209 (349)
..++ ..-|-.+|.-|.--+ -+-|+||-+. +| -..+ ..|||--+. +|+.
T Consensus 259 dT~~----Ai~gRtIHtyHtEGAGGGHAPDIi~v~g~~NvLPsSTNPT~PyT~NT~dEhlDMlMvcHhL~~~ipeDva-- 332 (567)
T cd00375 259 DTIA----AIKGRTIHTYHTEGAGGGHAPDIIKVAGHPNVLPSSTNPTRPFTVNTLDEHLDMLMVCHHLDPNIPEDVA-- 332 (567)
T ss_pred HHHH----HHCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCHHHH--
T ss_conf 4688----7579522224458888887832776414687777888999887656357647858995278989811455--
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC------
Q ss_conf 888311321346999999999999976-9941897138886531332154577544543679999999972069------
Q gi|254781012|r 210 GLNPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN------ 282 (349)
Q Consensus 210 ~~~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~------ 282 (349)
+.---||.+ -.|-=+.|-| |-| -+++||..- .|-.| +.+.-.+++-...-..++
T Consensus 333 ------FAeSRIR~e--TIAAEDvLHDmGai-Si~sSDSQA---------MGRvG-Evi~RTWQtA~kMK~qrG~L~~d~ 393 (567)
T cd00375 333 ------FAESRIRAE--TIAAEDVLHDLGAI-SIMSSDSQA---------MGRVG-EVILRTWQTAHKMKAQRGPLPEDS 393 (567)
T ss_pred ------HHHHCCCCH--HHHHHHHHHCCCCE-EEECCCCHH---------CCCCC-EEEEEHHHHHHHHHHHCCCCCCCC
T ss_conf ------666334520--14566665204633-234265221---------36540-135304675999997448898878
Q ss_pred ------CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf ------99999999824317881889--------888528999479
Q gi|254781012|r 283 ------KLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 283 ------~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
...|.+.+.+.|||...|+. +.-+|++|++|.
T Consensus 394 ~~~DN~RvkRYiAKyTINPAiahGis~~VGSvE~GK~ADlVLW~Pa 439 (567)
T cd00375 394 GDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPA 439 (567)
T ss_pred CCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 8775377766653155686887486543345247851238752614
No 96
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=98.09 E-value=0.00049 Score=44.40 Aligned_cols=261 Identities=16% Similarity=0.195 Sum_probs=136.8
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC---CC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 5586466423750881788987498741887399983---89--514898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVM---PN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~M---PN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
.|+-+|+||.||||=-.... -.|.+.|+||.+-. |. |+-.+.|+- .+...+.+++.. ....++++ +
T Consensus 131 ~I~TAGgiDtHvHfi~Pqq~---~~AL~sGiTT~iGGGtGPa~Gt~atT~TpG--~~~i~~ml~a~d-~~P~N~g~---l 201 (573)
T PRK13206 131 RILTAGAIDCHVHLICPQIV---DEALGAGITTIIGGGTGPAEGSKATTVTPG--AWHLARMLEALD-GWPVNIAL---L 201 (573)
T ss_pred EEEECCCEEEEEEECCHHHH---HHHHHCCCEEEECCCCCCCCCCCCCCCCCC--HHHHHHHHHHHH-CCCCEEEE---E
T ss_conf 07723733688984488889---999866970674587678777775101797--789999998503-17810556---4
Q ss_pred CCCCC--HHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78999--8899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 78 TETTD--PDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 78 t~~~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
.+++. .+.+.+.... ..+++|+- .|.|. .......+|..+-++|..+.+|...- +|+-+++
T Consensus 202 GKGn~s~~~~l~Eqi~A-Ga~GlKiH-------EDWGa-Tpa~Id~~L~vAde~DvQvaiHTDtL--------NEsGfve 264 (573)
T PRK13206 202 GKGNTVSPEAMWEQLRG-GAAGFKLH-------EDWGT-TPAAIDACLTVADAAGVQVALHSDTL--------NEAGFVE 264 (573)
T ss_pred ECCCCCCHHHHHHHHHH-CCCEEECC-------CCCCC-CHHHHHHHHHHHHHHCCEEEEECCCC--------CCCCCHH
T ss_conf 23667881789999972-52332102-------21378-87899988777786392689744876--------5444136
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHH---HHHHHHHCC--CC-CEEE-------------------ECCCCCCCH-HHHHCC
Q ss_conf 789999962069539970578589---999987057--33-2023-------------------023100397-886137
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTSN---GIDYVNNAT--NI-AGSI-------------------TVHHLIINR-NAIFHD 209 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~~---sv~lir~ak--~v-taEV-------------------TPHHL~lt~-~d~~~~ 209 (349)
..+. ..-|-.+|.-|.--+. +-|+||-+. +| -..+ .+|||--+. +|+.
T Consensus 265 dTi~----Ai~gRtIHtyHtEGAGGGHAPDIi~v~g~~NVLPsSTNPT~PyT~NT~dEhlDMlMvcHhL~~~ipeDva-- 338 (573)
T PRK13206 265 DTLA----AIAGRSIHAYHTEGAGGGHAPDIITVASHPNVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPSVPEDLA-- 338 (573)
T ss_pred HHHH----HHCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCHHHH--
T ss_conf 6788----7569740244215777777642532016788667889999886577266640838761378989820345--
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC------
Q ss_conf 888311321346999999999999976-9941897138886531332154577544543679999999972069------
Q gi|254781012|r 210 GLNPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN------ 282 (349)
Q Consensus 210 ~~~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~------ 282 (349)
+.---||.+ -.|-=+.|-| |-| -+++||..- .|-.| +.+.-.+++-...-..++
T Consensus 339 ------FAeSRIR~e--TIAAEDvLHDmGai-Si~sSDSQA---------MGRvG-Evi~RTWQtA~kMK~qrG~L~~d~ 399 (573)
T PRK13206 339 ------FAESRIRPS--TIAAEDLLHDIGAI-SMIGSDSQA---------MGRIG-EVVLRTWQTAHVMKRRRGALPGDG 399 (573)
T ss_pred ------HHHHCCCCC--HHHHHHHHHCCCCE-EEECCCCHH---------CCCCC-EEEEEHHHHHHHHHHCCCCCCCCC
T ss_conf ------666245520--14566665204633-234265221---------36540-135304676877865028798888
Q ss_pred -----CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf -----99999999824317881889--------888528999479
Q gi|254781012|r 283 -----KLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 283 -----~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
...|.+.+.+.|||-..|+. +.-+||+|++|.
T Consensus 400 ~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GK~ADlVLW~Pa 444 (573)
T PRK13206 400 RADNNRARRYVAKYTICPAVAHGLDHEIGSVEVGKLADLVLWEPA 444 (573)
T ss_pred CCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 884089887776446686887486533346468851248763636
No 97
>pfam01026 TatD_DNase TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme.
Probab=98.07 E-value=0.00099 Score=42.49 Aligned_cols=232 Identities=15% Similarity=0.130 Sum_probs=103.4
Q ss_pred CEEEEECCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC----C
Q ss_conf 423750881----78898749874188739998389514898989999999999983868846995013452789----9
Q gi|254781012|r 10 DDWHLHLRD----GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTET----T 81 (349)
Q Consensus 10 ~D~HvH~Re----g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~----~ 81 (349)
||.|+|+-. +|...--..|...|++.++.+- |. ++......+ ..+.... ....+.++.+. .
T Consensus 1 iD~H~HL~~~~~~~d~~~vl~~a~~~gv~~ii~~~-~~-----~~~~~~~~~-la~~~~~----~v~~~~GiHP~~~~~~ 69 (255)
T pfam01026 1 IDAHCHLDFKKFDGDRDEVIERAREAGVTAVVVVG-TD-----LKDFERALE-LARKYPG----KVYAAVGVHPHEADEA 69 (255)
T ss_pred CEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEEEC-CC-----HHHHHHHHH-HHHHCCC----CEEEEECCCHHHHCCC
T ss_conf 94313789814356999999999987999899956-99-----999999999-9976876----6789953581011516
Q ss_pred CHHHHHHHH-----HCCCEEEHHHCCCCC-EECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 988998744-----068721022104551-00256541006889999999987398222025755555430014676545
Q gi|254781012|r 82 DPDDVEKGF-----TSQLVQAIKLYFAGS-TTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 82 ~~~~~~~~~-----~~~~~~~~k~~~~~~-~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
......... ....+.+++..+-.- ..+....-.....+.+-++.+.++++|+++|+-+ ++....
T Consensus 70 ~~~~~~~l~~~~~~~~~~~vaIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~~~~lPvilH~r~---------a~~~~~- 139 (255)
T pfam01026 70 SEEVLEALEKLKLAEHPKVVAIGEIGLDYYYVDESPKEAQEEVFRRQLELAKELDLPVVIHTRD---------AEEDLL- 139 (255)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC---------HHHHHH-
T ss_conf 8899999999974358987999801357765799989999999999999998708974898455---------399999-
Q ss_pred HHHHHHHH-HHCCCEEEEECCC--HHHHH-HHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCC---CCHHHHH
Q ss_conf 78999996-2069539970578--58999-9987057332023023100397886137888311321346---9999999
Q gi|254781012|r 156 KILDPLRN-KLPNLKIILEHIT--TSNGI-DYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIP---KREKHRL 228 (349)
Q Consensus 156 ~~l~~~~a-~~~~~~iHi~HiS--T~~sv-~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPl---R~~~dr~ 228 (349)
+++.. ...+.+++ .|.= +.+.+ .+++.+ .++=+++.+ |++.-|+
T Consensus 140 ---~il~~~~~~~~~~v-~H~fsG~~~~~~~~~~~g-------------------------~~~s~~g~i~~~~~~~~~~ 190 (255)
T pfam01026 140 ---EILKEAGAPGLRVV-LHCFTGSLETAKEILDLG-------------------------FYISISGIVTFKNAEELRE 190 (255)
T ss_pred ---HHHHHHCCCCCCEE-EEECCCCHHHHHHHHHCC-------------------------CEEEEEEEECCCHHHHHHH
T ss_conf ---99998267788557-776789999999999689-------------------------5698601314604799999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHCCHHHCC
Q ss_conf 999999769941897138886531332154577544543679999999972--069999999998243178818
Q gi|254781012|r 229 SLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFE--EENKLENLESFVSINGATWYG 300 (349)
Q Consensus 229 aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~--~~~~L~~l~~~~s~npa~~~g 300 (349)
.+ +.+-. +- -++-||. |...-.+. -|-...|..++.++.... +..+.+.+.+.++.|..++||
T Consensus 191 ~~-~~iPl-~r-lllETD~-P~l~p~~~-----rg~~NeP~~v~~v~~~iA~~~~~~~e~v~~~~~~N~~~lFG 255 (255)
T pfam01026 191 VV-AEIPL-DR-LLVETDA-PYLAPVPY-----RGKRNEPAYVPHVAEKLAELKGISEEEVAKITTENAKRLFG 255 (255)
T ss_pred HH-HHCCC-CE-EEEECCC-CCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 99-74996-25-9983589-87787778-----99988879999999999988598999999999999998649
No 98
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.04 E-value=0.00034 Score=45.35 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=35.2
Q ss_pred CEEEECCCCEEEEECCCHHHHH-HHHHHHCCCCEEEEECCCCCC--CCCCHHHHHHHHHH
Q ss_conf 6558646642375088178898-749874188739998389514--89898999999999
Q gi|254781012|r 2 KKISLRVPDDWHLHLRDGEILK-TVLRDTAKNFRRALVMPNIDP--PIITVDDACAYRQR 58 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Reg~~~~-~t~aa~aGG~TtV~~MPNT~P--pi~t~e~~~~~~~r 58 (349)
.+|+-||+||+|+|---+-+.+ +-++...-|||||+ |-|.-- .-.+.+.+...+.+
T Consensus 56 griVaPGFIDvHtHyD~~~~~d~~l~psv~hGVTTVv-~GNCgis~ap~n~ed~d~l~s~ 114 (579)
T COG3653 56 GRIVAPGFIDVHTHYDAEVLLDPGLRPSVRHGVTTVV-LGNCGISTAPANSEDADDLFSR 114 (579)
T ss_pred CCEECCCEEEEEECCCCEEEECCCCCCHHHCCEEEEE-ECCCCCCCCCCCHHHHHHHHHH
T ss_conf 8675266777554156104546775502206715999-6475344345884563104556
No 99
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=98.04 E-value=0.0011 Score=42.13 Aligned_cols=172 Identities=22% Similarity=0.257 Sum_probs=102.3
Q ss_pred CHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHH-HHHHHHHHH
Q ss_conf 9889987440687210221045510025654100688999999998739822202575555543001467-654578999
Q gi|254781012|r 82 DPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDREL-MFIDKILDP 160 (349)
Q Consensus 82 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~-~~~~~~l~~ 160 (349)
...++.+......+.++++.+... ....+...++++++.+.++|.|+.+|--.+...... +. ......++-
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~-----~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~---~~~~~~p~~~~~ 185 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQ-----GFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGL---EKGHSDPLYLDD 185 (293)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCC-----CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCCCCHHHHHH
T ss_conf 999999999863850489655534-----678874578999999997699889972899766664---546678689999
Q ss_pred HHHHHCCCEEEEECCC-----HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9962069539970578-----58999998705733202302310039788613788831132134699999999999997
Q gi|254781012|r 161 LRNKLPNLKIILEHIT-----TSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAAL 235 (349)
Q Consensus 161 ~~a~~~~~~iHi~HiS-----T~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~ 235 (349)
...+++.+++.+.|.. ..+.+++.+...++..++.- ..+ |+-+| .+|+-+.
T Consensus 186 va~~fP~l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~d~s~--------------~~~--~~~~~--------~~~~~~~ 241 (293)
T COG2159 186 VARKFPELKIVLGHMGEDYPWELEAIELAYAHPNVYLDTSG--------------VRP--KYFAP--------PLLEFLK 241 (293)
T ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHEEECC--------------CCC--CCCCH--------HHHHHHH
T ss_conf 99868998889992588775388999988757652001102--------------366--55738--------9999998
Q ss_pred C-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCCC
Q ss_conf 6-9941897138886531332154577544543679999999972069999999998243178818898
Q gi|254781012|r 236 S-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIPV 303 (349)
Q Consensus 236 ~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~~ 303 (349)
. |.-..+.||| -|+...++. +..+.....+-+...+++-.|++|+|||.+
T Consensus 242 ~~~~dkilFGSD-~P~~~~~~~-----------------l~~~~~l~l~~e~k~kiL~~NA~rll~l~~ 292 (293)
T COG2159 242 ELGPDKILFGSD-YPAIHPEVW-----------------LAELDELGLSEEVKEKILGENAARLLGLDP 292 (293)
T ss_pred HCCCCEEEECCC-CCCCCHHHH-----------------HHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 606770896479-888676777-----------------999986489999999999870999968688
No 100
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=97.98 E-value=0.001 Score=42.44 Aligned_cols=261 Identities=17% Similarity=0.180 Sum_probs=137.8
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC---CC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 5586466423750881788987498741887399983---89--514898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVM---PN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~M---PN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
.|+-+|+||.||||=-.+.. -.|.+.|+||.+-. |. |+-.+.|+-. +...+.+++.. ....++++ +
T Consensus 125 ~I~TaGgiDtHvHfi~Pqq~---~~Al~sGiTT~iGGGtGPa~Gt~att~tpG~--~~i~~ml~a~d-~~P~N~g~---~ 195 (568)
T PRK13207 125 LIVTAGGIDTHIHFICPQQI---EEALASGVTTMIGGGTGPATGTNATTCTPGP--WHIHRMLQAAD-AFPVNIGF---L 195 (568)
T ss_pred CEEECCCEEEEEEECCHHHH---HHHHHCCCEEEECCCCCCCCCCCCCCCCCCH--HHHHHHHHHHH-CCCCCEEE---E
T ss_conf 07712611665530588789---9998558668745876887666566668977--99999998654-07721356---6
Q ss_pred CCCC--CHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7899--98899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 78 TETT--DPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 78 t~~~--~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
.+++ ..+.+.+.... ..+++|+- .|.|. ....+..+|..+-++|..+.+|...- +|+-+++
T Consensus 196 gKGn~s~~~~l~eqi~A-Ga~GlKiH-------EDwGa-tpa~Id~~L~vad~~DvQvaiHTDtL--------NEsGfvE 258 (568)
T PRK13207 196 GKGNASLPEALEEQIEA-GAIGLKLH-------EDWGA-TPAAIDNCLSVADEYDVQVAIHTDTL--------NESGFVE 258 (568)
T ss_pred ECCCCCCCHHHHHHHHH-CCEEEEEE-------CCCCC-CHHHHHHHHHHHCCCCEEEEEEECCC--------CCCCEEC
T ss_conf 33667882789999861-82578850-------00378-88899878654122473699970666--------5566031
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHH---HHHHHHCC--CC-CEEE-------------------ECCCCCCCH-HHHHCC
Q ss_conf 7899999620695399705785899---99987057--33-2023-------------------023100397-886137
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTSNG---IDYVNNAT--NI-AGSI-------------------TVHHLIINR-NAIFHD 209 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~~s---v~lir~ak--~v-taEV-------------------TPHHL~lt~-~d~~~~ 209 (349)
..++ ..-|--+|.-|.--+.+ -|+||-+. +| -..+ .+|||--+. +|+.
T Consensus 259 dT~~----Ai~gRtIHtyHtEGAGGGHAPDii~v~g~~nvLPsSTNPT~PyT~NT~dEhlDMlMvcHhL~~~ipeDva-- 332 (568)
T PRK13207 259 DTIA----AFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPSIPEDVA-- 332 (568)
T ss_pred CHHH----HHCCCEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCCCCHHHHH--
T ss_conf 2366----6279457776405777777616777624787677888999886656223312748874047988703566--
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC------
Q ss_conf 888311321346999999999999976-9941897138886531332154577544543679999999972069------
Q gi|254781012|r 210 GLNPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN------ 282 (349)
Q Consensus 210 ~~~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~------ 282 (349)
+----||.+ -.|-=+.|-| |-| -+++||..-- |-.| +.+.-.+++-...-..++
T Consensus 333 ------FAeSRIR~e--TIAAEDvLhD~Gai-Si~sSDsQaM---------GRvG-Evi~RTwQtA~kmK~qrG~L~~d~ 393 (568)
T PRK13207 333 ------FAESRIRRE--TIAAEDILHDLGAF-SMISSDSQAM---------GRVG-EVIIRTWQTAHKMKVQRGALPGDS 393 (568)
T ss_pred ------HHHHHCHHH--HHHHHHHHHHCCCE-EEECCCHHHC---------CCCC-CEEECHHHHHHHHHHHCCCCCCCC
T ss_conf ------666310066--66666654102413-3211520331---------5210-101124776999987448898877
Q ss_pred ------CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf ------99999999824317881889--------888528999479
Q gi|254781012|r 283 ------KLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 283 ------~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
..-|.+.+.+.|||-..|+. +.-+||+|++|.
T Consensus 394 ~~~DN~RikRYiAKyTINPAIahGis~~vGSvE~GK~ADlVlW~Pa 439 (568)
T PRK13207 394 ERNDNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPA 439 (568)
T ss_pred CCCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEEEEEECHH
T ss_conf 6665347877766621477886475322056457624227752536
No 101
>PRK13985 UreB urease subunit beta; Provisional
Probab=97.84 E-value=0.0025 Score=40.00 Aligned_cols=263 Identities=17% Similarity=0.163 Sum_probs=136.7
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEC---CC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 5586466423750881788987498741887399983---89--514898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVM---PN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~M---PN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
.|+-+|+||.||||=-.... -.|.+.|+||.+-. |. |+-.+.|+-. +...+.+++. ....+++++ +
T Consensus 125 ~I~TaGgiDtHvHfi~Pqq~---~~AL~sGiTT~iGGGtGPa~Gt~att~TpG~--~~i~~ml~a~-d~~P~N~g~---~ 195 (568)
T PRK13985 125 LIVTAGGIDTHIHFISPQQI---PTAFASGVTTMIGGGTGPADGTNATTITPGR--RNLKWMLRAA-EEYSMNLGF---L 195 (568)
T ss_pred CEEEECCEEEEEEECCHHHH---HHHHHCCCEEEECCCCCCCCCCCCCCCCCCH--HHHHHHHHHH-CCCCCEEEE---E
T ss_conf 18973442657664388889---9998648657744875787776776768977--8999999750-048701577---5
Q ss_pred CCCC--CHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7899--98899874406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 78 TETT--DPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 78 t~~~--~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
.+++ ..+.+.+.... ...++|+- .|.|. .......+|..+-++|..+.+|-..- +|+-+++
T Consensus 196 gKGn~s~~~~L~Eqi~A-Ga~GlKiH-------EDWGa-Tpa~Id~~L~vAde~DvQvaiHTDtL--------NEsGfvE 258 (568)
T PRK13985 196 AKGNASNDASLADQIEA-GAIGFKIH-------EDWGT-TPSAINHALDVADKYDVQVAIHTDTL--------NEAGCVE 258 (568)
T ss_pred ECCCCCCHHHHHHHHHH-CCCCCCCC-------CCCCC-CHHHHHHHHHHHHHHCCEEEEECCCC--------CCCCCHH
T ss_conf 32666880779999972-42513343-------11378-87899999888887492689745886--------6544036
Q ss_pred HHHHHHHHHHCCCEEEEECCCHH---HHHHHHHHCC--CC-CEEE-------------------ECCCCCCCHHHHHCCC
Q ss_conf 78999996206953997057858---9999987057--33-2023-------------------0231003978861378
Q gi|254781012|r 156 KILDPLRNKLPNLKIILEHITTS---NGIDYVNNAT--NI-AGSI-------------------TVHHLIINRNAIFHDG 210 (349)
Q Consensus 156 ~~l~~~~a~~~~~~iHi~HiST~---~sv~lir~ak--~v-taEV-------------------TPHHL~lt~~d~~~~~ 210 (349)
..++ ..-|-.+|.-|.--+ -+-|+||-+. +| -..+ ..|||--+ +.++
T Consensus 259 dT~~----Ai~gRtIHtyHtEGAGGGHAPDIi~v~g~~NVLPsSTNPT~PyT~NT~dEhlDMlMvcHhL~~~---ipeD- 330 (568)
T PRK13985 259 DTMA----AIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKS---IKED- 330 (568)
T ss_pred HHHH----HHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEECCCCCCC---CCCC-
T ss_conf 5788----7579730344315777787731645306788778889999886577357756805560578989---8421-
Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-------
Q ss_conf 88311321346999999999999976-9941897138886531332154577544543679999999972069-------
Q gi|254781012|r 211 LNPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN------- 282 (349)
Q Consensus 211 ~~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~------- 282 (349)
. .+----||.+ -.|-=+.|-| |-| -+++||..- .|-.| +.+.-.+++-...-..++
T Consensus 331 v---aFAeSRIR~e--TIAAEDvLHD~Gai-Si~sSDSQA---------MGRvG-Evi~RTWQtA~kMK~~rG~L~~d~~ 394 (568)
T PRK13985 331 V---QFADSRIRPQ--TIAAEDTLHDMGIF-SITSSDSQA---------MGRVG-EVITRTWQTADKNKKEFGRLKEEKG 394 (568)
T ss_pred H---HHHHHCCCHH--HHHHHHHHHCCCCE-EEECCCCHH---------CCCCC-EEECCHHHHHHHHHHHCCCCCCCCC
T ss_conf 0---1555243112--25566664025724-445255211---------46550-0230155608889874088976577
Q ss_pred -----CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECCC
Q ss_conf -----99999999824317881889--------8885289994797
Q gi|254781012|r 283 -----KLENLESFVSINGATWYGIP--------VNTRKISLKRREQ 315 (349)
Q Consensus 283 -----~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~~ 315 (349)
...|.+.+.+.|||...|+. +.-+||+|++|..
T Consensus 395 ~nDN~RvkRYiAKyTINPAiahGis~~vGSvE~GK~ADlVLW~Paf 440 (568)
T PRK13985 395 DNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAF 440 (568)
T ss_pred CCCHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCHHHEEEECCCC
T ss_conf 6416788877543222757665830025765546401034205755
No 102
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=97.82 E-value=0.0014 Score=41.54 Aligned_cols=262 Identities=16% Similarity=0.182 Sum_probs=135.2
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC
Q ss_conf 55864664237508817889874987418873999838951489898999999999998386884699501345278999
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTETTD 82 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~~ 82 (349)
.|+-+|+||.||||=-.... -.|.+.|+||.+-.- |=|..++.---.+...+.+++.. ....++++ +.+++.
T Consensus 129 ~I~TAGgiDtHvHfi~Pqq~---~~AL~sGiTT~iGGG-tGp~att~Tpg~~~i~~ml~a~d-~~P~N~g~---lgKGn~ 200 (569)
T PRK13308 129 LIATPGAIDVHVHFDSAGLV---DHALASGITTMIGGG-LGPTVGIDSGGPFNTGRFLQAAE-AWPVNFGF---LGRGNS 200 (569)
T ss_pred CEEECCCEEEEEEECCHHHH---HHHHHCCCEEEECCC-CCCCCCCCCCCHHHHHHHHHHHH-CCCCCEEE---EECCCC
T ss_conf 16603630456663387789---999861862325787-57876566898899999997644-17731455---103666
Q ss_pred --HHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf --889987440687210221045510025654100688999999998739822202575555543001467654578999
Q gi|254781012|r 83 --PDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDP 160 (349)
Q Consensus 83 --~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~ 160 (349)
.+.+.+.... ...++|+- .|.|.. ......+|..+-++|..+.+|...- +|+-+++..+.
T Consensus 201 s~~~~L~eqi~A-Ga~GlKiH-------EDWGaT-PaaId~~L~vAd~~DvQvaiHTDTL--------NEsGfvedTi~- 262 (569)
T PRK13308 201 SDPAALIEQVEA-GVMGLKIH-------EDWGAM-PAAIDTCLGAADEYDFQVQLHTDTL--------NESGFVEDTLA- 262 (569)
T ss_pred CCCHHHHHHHHH-HHCCCCCC-------CCCCCC-HHHHHHHHHHHHHHCEEEEEECCCC--------CCCCCCHHHHH-
T ss_conf 880789999985-43313334-------655787-3666677677776381689851764--------34555032588-
Q ss_pred HHHHHCCCEEEEECCCHH---HHHHHHHHCC--CC-CEEE-------------------ECCCCCCCH-HHHHCCCCCCC
Q ss_conf 996206953997057858---9999987057--33-2023-------------------023100397-88613788831
Q gi|254781012|r 161 LRNKLPNLKIILEHITTS---NGIDYVNNAT--NI-AGSI-------------------TVHHLIINR-NAIFHDGLNPH 214 (349)
Q Consensus 161 ~~a~~~~~~iHi~HiST~---~sv~lir~ak--~v-taEV-------------------TPHHL~lt~-~d~~~~~~~~~ 214 (349)
..-|--+|--|.--+ -+-|+||-+. +| -..+ .+|||--+. +|+.
T Consensus 263 ---Ai~gRtIHtyHtEGAGGGHAPDIi~~~g~~NVLPsSTNPT~PyT~NT~dEhlDMlMvcHhL~~~ipeDva------- 332 (569)
T PRK13308 263 ---AIGGRTIHMYHTEGAGGGHAPDIIRVVGEPHCLPSSTNPTNPYTVNTFDEHLDMTMVCHHLNPDVPEDVA------- 332 (569)
T ss_pred ---HHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCHHHH-------
T ss_conf ---7479524432125777887535767406788767889999886577355643848872378989820355-------
Q ss_pred EEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-----------
Q ss_conf 1321346999999999999976-9941897138886531332154577544543679999999972069-----------
Q gi|254781012|r 215 YYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN----------- 282 (349)
Q Consensus 215 ~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~----------- 282 (349)
+.---+|.+ -.|-=+.|-| |-| -+++||..- .|-.| +.+.-.+++-...-..++
T Consensus 333 -FAeSRIR~e--TIAAEDvLHDmGai-Si~sSDSQA---------MGRvG-Evi~RTWQtA~kMK~qrG~L~ed~~~~~D 398 (569)
T PRK13308 333 -FAESRIRAQ--TIAAEDVLHDMGAI-SMLGSDSQG---------MGRIA-EVICRTWQLASKMKDQRGPLPEERTTFAD 398 (569)
T ss_pred -HHHHCCCCH--HHHHHHHHHCCCCE-EEECCCCHH---------CCCCC-EEEEEHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf -666345520--14566665204633-234265221---------36540-13530467598898623889987788764
Q ss_pred --CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf --99999999824317881889--------888528999479
Q gi|254781012|r 283 --KLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 283 --~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
..-|.+.+.+.|||...|+. +.-+|++|++|.
T Consensus 399 N~RvkRYiAKyTINPAIahGis~~VGSvE~GK~ADlVLW~Pa 440 (569)
T PRK13308 399 NARIKRYIAKYTINPAITFGIDDHVGSLEPGKMADIVLWRPA 440 (569)
T ss_pred CHHHHHHHHHEEECHHHHHCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 078865535402172565044454456558850348763636
No 103
>TIGR01792 urease_alph urease, alpha subunit; InterPro: IPR005848 Urease (urea amidohydrolase, 3.5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies , but each holoenzyme consists of four structural domains : three structural domains and a nickel-binding catalytic domain common to amidohydrolases . Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organization as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organization (IPR008221 from INTERPRO). This entry describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Urease (3.5.1.5 from EC) belongs to MEROPS peptidase family M38 (clan MJ). ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process.
Probab=97.76 E-value=0.00024 Score=46.34 Aligned_cols=264 Identities=16% Similarity=0.156 Sum_probs=162.6
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEE----CCC-CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 558646642375088178898749874188739998----389-514898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALV----MPN-IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~----MPN-T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
.|+==|++|+||||=.+.+.. +|..+|+||++. |-| |+=.++|+- .+|.+|.+++. ...-.++++.+.-
T Consensus 133 ~I~TAGGiDtHVHyi~P~~~~---~AL~~GITT~~GGGTGpadGt~atT~tpG--~w~~~~ml~a~-dglPiN~G~~gKG 206 (605)
T TIGR01792 133 KIVTAGGIDTHVHYISPQQVQ---AALDSGITTLIGGGTGPADGTKATTCTPG--PWYLHRMLQAA-DGLPINIGFTGKG 206 (605)
T ss_pred CEEECCCCEEEEEEECCCHHH---HHHCCCCEEEECCCCCCCCCCCCEEECCC--HHHHHHHHHHH-CCCCCCCCEEEEC
T ss_conf 101048640467860643788---98528987997274354678754542773--79999999975-4675101235204
Q ss_pred CCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 78999889987440687210221045510025654100688999999998739822202575555543001467654578
Q gi|254781012|r 78 TETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKI 157 (349)
Q Consensus 78 t~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~ 157 (349)
.. .....+.+....+ .+++|+- .|.|. ....+..+|..+-++|+.+.+|.-- + +|+=|++.-
T Consensus 207 ~~-s~~~al~E~i~AG-A~GlKvH-------EDWGA-Tp~aId~aL~vAd~yDVqvA~HtDT--L------NE~GfVE~T 268 (605)
T TIGR01792 207 SA-SGPEALVEQIEAG-ACGLKVH-------EDWGA-TPAAIDNALSVADEYDVQVAVHTDT--L------NESGFVEDT 268 (605)
T ss_pred CC-CCHHHHHHHHHHH-HCEECCC-------CCCCC-CHHHHHHHHHHHHHCCCEEEEECCC--C------CCCCCHHHH
T ss_conf 54-5323799999861-0000212-------36577-6889999998753068028882342--2------553316779
Q ss_pred HHHHHHHHCCCEEEEECCCHHH---HHHHHHHCC--CC-CEEEE-------------------CCCCCCCHHHHHCCCCC
Q ss_conf 9999962069539970578589---999987057--33-20230-------------------23100397886137888
Q gi|254781012|r 158 LDPLRNKLPNLKIILEHITTSN---GIDYVNNAT--NI-AGSIT-------------------VHHLIINRNAIFHDGLN 212 (349)
Q Consensus 158 l~~~~a~~~~~~iHi~HiST~~---sv~lir~ak--~v-taEVT-------------------PHHL~lt~~d~~~~~~~ 212 (349)
++ .+.|--+|-=|-==+. +-|+|+-++ || =+.++ +|||-= .+.++
T Consensus 269 ia----A~kGRtiH~yHTEGAGGGHAPDii~v~~y~NvLPsSTNPT~PYtvNTidEhlDM~MvCH~Lnp---~IPeD--- 338 (605)
T TIGR01792 269 IA----AFKGRTIHTYHTEGAGGGHAPDIIKVVGYENVLPSSTNPTLPYTVNTIDEHLDMLMVCHHLNP---KIPED--- 338 (605)
T ss_pred HH----HHCCCEEEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHEEEECCCC---CCCCC---
T ss_conf 98----717984751014788766310166300558728878867887412336763020025217578---87634---
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCH-------
Q ss_conf 311321346999999999999976-994189713888653133215457754454367999999997206999-------
Q gi|254781012|r 213 PHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKL------- 284 (349)
Q Consensus 213 ~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L------- 284 (349)
-++---=||++--- ==+.|.| |-| =+|+||. .-.|--| +-..-++++-...-+.+++|
T Consensus 339 -vAFAeSRIR~eTiA--AEDvLqDmGAi-SmisSDs---------QAMGRvG-Ev~~R~WQ~A~kMK~~RGpL~gD~Ps~ 404 (605)
T TIGR01792 339 -VAFAESRIRKETIA--AEDVLQDMGAI-SMISSDS---------QAMGRVG-EVVTRTWQTADKMKKQRGPLDGDRPSE 404 (605)
T ss_pred -CCCCCCCCHHHHHH--HHHHHHCCCEE-EHHHHHC---------CCCCCHH-HHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf -14323331136777--87664310401-0110200---------0144434-666667999988865157136766667
Q ss_pred -------HHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf -------999999824317881889--------888528999479
Q gi|254781012|r 285 -------ENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 285 -------~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
-|-|.+.+.|||=--|+. +.-|||+|++|+
T Consensus 405 ~NDNnRvkRYvAKYTINPAIthGi~d~vGSievGK~ADlvlWeP~ 449 (605)
T TIGR01792 405 YNDNNRVKRYVAKYTINPAITHGISDYVGSIEVGKLADLVLWEPA 449 (605)
T ss_pred CCCCCEEEEEEEEECCCHHHHCCCCCCCCEECHHHHHHHHHCCCC
T ss_conf 888743655662001465875562230000200004113210864
No 104
>KOG3968 consensus
Probab=97.67 E-value=0.0046 Score=38.35 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=63.4
Q ss_pred EEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 99705785899999870573320230231003978861378883113213469999999999999769941897138886
Q gi|254781012|r 170 IILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAP 249 (349)
Q Consensus 170 iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAP 249 (349)
.|.+|+|+.+-.-+-+++..| -.||- ++ .+... |. ||+| +-|..|.+.. +|||=+|
T Consensus 277 aH~~hl~d~ei~~l~k~g~sv--shCP~----Sn-~~L~s--G~-----~~vr---------~lL~~~v~Vg-LGtDv~~ 332 (439)
T KOG3968 277 AHLEHLSDEEIELLAKRGCSV--SHCPT----SN-SILGS--GI-----PRVR---------ELLDIGVIVG-LGTDVSG 332 (439)
T ss_pred HHHEECCCHHHHHHHHCCCCE--EECCC----CH-HHHCC--CC-----CCHH---------HHHHCCCEEE-ECCCCCC
T ss_conf 641104711678998628744--77776----40-34306--88-----4589---------9975181673-1687666
Q ss_pred CCHHHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHCCHHHCCCCCC--------CCEEEEEECCCC
Q ss_conf 531332154577544543679999999972--0699999999982431788188988--------852899947971
Q gi|254781012|r 250 HWDSSKESSCGCAGIYTARNALNCLAQIFE--EENKLENLESFVSINGATWYGIPVN--------TRKISLKRREQP 316 (349)
Q Consensus 250 H~~eeK~~~~~~~g~~~~~~~~~~~~~~~~--~~~~L~~l~~~~s~npa~~~gl~~~--------~~~i~l~d~~~~ 316 (349)
.+.-+- .-....+++.+..+. ...+++++..+.+.|+|+.+|+... ..|..++|.+.+
T Consensus 333 ~s~l~a---------~r~A~~~s~hL~~~~~~~~Ls~~e~L~lATi~GA~aLg~d~~~Gs~eVGK~fDai~id~s~~ 400 (439)
T KOG3968 333 CSILNA---------LRQAMPMSMHLACVLDVMKLSMEEALYLATIGGAKALGRDDTHGSLEVGKYFDAIIIDLSAP 400 (439)
T ss_pred CCCHHH---------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCEECCCCCCEEEEECCCC
T ss_conf 410899---------99998999888742673248999999998505165406777656542145355699847987
No 105
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=97.51 E-value=0.0078 Score=36.94 Aligned_cols=235 Identities=14% Similarity=0.118 Sum_probs=107.2
Q ss_pred CCCEEEEECCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC---
Q ss_conf 66423750881----78898749874188739998389514898989999999999983868846995013452789---
Q gi|254781012|r 8 VPDDWHLHLRD----GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTET--- 80 (349)
Q Consensus 8 ~~~D~HvH~Re----g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~--- 80 (349)
..||.|+||-. +|...--..|...|+..++. +-++++......+ +.....++ ..+.++.+.
T Consensus 4 k~iDtH~HL~~~~~~~d~~~vi~~a~~~gv~~i~~------~g~~~~~~~~~~~--l~~~~~~i----~~~vGiHP~~~~ 71 (258)
T PRK11449 4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIV------PATEAANFARVLA--LAERYQPL----YAALGLHPGMLE 71 (258)
T ss_pred CEEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEE------ECCCHHHHHHHHH--HHHHCCCC----EEECCCCCCHHH
T ss_conf 37986117998154769999999999829999999------3499999999999--98759630----187058976111
Q ss_pred ----CCHHHHHHHHHC--CCEEEHHHCCCCCEECCCCC--CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHH
Q ss_conf ----998899874406--87210221045510025654--1006889999999987398222025755555430014676
Q gi|254781012|r 81 ----TDPDDVEKGFTS--QLVQAIKLYFAGSTTNSHHG--IRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELM 152 (349)
Q Consensus 81 ----~~~~~~~~~~~~--~~~~~~k~~~~~~~~~~~~~--v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~ 152 (349)
...+.+.+.... ..+.+++..+ .....+.. -.......+-++.+.++++|+++|+=+ ++..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~vvaIGEiG--LDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPvviH~R~---------A~~~ 140 (258)
T PRK11449 72 KHSDVSLDQLQQALERRPAKVVAVGEIG--LDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRR---------THDK 140 (258)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECHH---------HHHH
T ss_conf 0570059999999981878789983456--4778899869999999999999999849975986221---------3799
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCHH---HHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHH
Q ss_conf 54578999996206953997057858---999998705733202302310039788613788831132134699999999
Q gi|254781012|r 153 FIDKILDPLRNKLPNLKIILEHITTS---NGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLS 229 (349)
Q Consensus 153 ~~~~~l~~~~a~~~~~~iHi~HiST~---~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~a 229 (349)
.+.++ .+....+..|.|.=|. ..-++++.|-.++. + |. -+.| |+.+-|++
T Consensus 141 ----~~~~l-~~~~~~~~gi~H~FsG~~~~a~~~l~~G~yiS~---------~---------g~--it~~--~~~~~~~~ 193 (258)
T PRK11449 141 ----LAMHL-KRHDLPRTGVVHGFSGSLQQAERFVQLGYKIGV---------G---------GT--ITYP--RASKTRDV 193 (258)
T ss_pred ----HHHHH-HHCCCCCCCEEEECCCCHHHHHHHHHCCCEEEE---------C---------EE--EECC--CCHHHHHH
T ss_conf ----99999-855888575476278999999999976982876---------5---------48--6346--77999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHCCHHHCCC
Q ss_conf 9999976994189713888653133215457754454367999999997--20699999999982431788188
Q gi|254781012|r 230 LRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIF--EEENKLENLESFVSINGATWYGI 301 (349)
Q Consensus 230 L~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~--~~~~~L~~l~~~~s~npa~~~gl 301 (349)
+...=.| . -++=||. |... +.+.-|-..-|.-++.+++.. -+..+++.+.+.+..|-.|+|||
T Consensus 194 v~~iPld-r--ll~ETDs-Pyl~-----p~~~rg~~NeP~~i~~v~~~iA~ik~~~~eev~~~~~~N~~~lF~l 258 (258)
T PRK11449 194 IAKLPLA-S--LLLETDA-PDMP-----LNGFQGQPNRPEQAARVFDVLCELRPEPADEIAEVLLNNTYTLFRV 258 (258)
T ss_pred HHHCCCH-H--EEEECCC-CCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9959915-6--8993369-9998-----9999999886189999999999886979999999999999998592
No 106
>TIGR00010 TIGR00010 hydrolase, TatD family; InterPro: IPR015991 Escherichia coli TatD (synonym MttC) has been shown experimentally to be a DNase . On the basis of operon structure, it was originally thought to be involved in the Sec-independent export of protein precursors bearing twin arginine signal peptides by the Tat system . This alternative membrane targeting and translocation system (Mtt), also called twin arginine translocase (Tat) (MttA1A2BC or TatABCD), has been shown to transport fully folded proteins to, or across, the membrane , . However, it was later determined that TatD is not required for this translocation process , . Furthermore, it was noted that no exact correlation exists between the ability of an organism to synthesise a TatD-like protein and whether that organism has a Tat protein transport pathway . Also, with the exception of Escherichia coli , the genetic linkage between TatD and other Tat genes (operon structure) is not maintained. Members of this group may be distantly related to a large 3D fold-based domain superfamily of metalloenzymes . The description of this fold superfamily was based on an analysis of conservation patterns in three dimensions, and the discovery that the same active-site architecture occurs in a large set of enzymes involved primarily in nucleotide metabolism. The group is thought to include urease, dihydroorotase, allantoinase, hydantoinase, AMP-, adenine- and cytosine- deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolase, formylmethanofuran dehydrogenase, and other enzymes ..
Probab=97.29 E-value=0.0023 Score=40.26 Aligned_cols=243 Identities=16% Similarity=0.107 Sum_probs=121.2
Q ss_pred CCEEEEECCC----H---HHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH-HHHHHHHHHCCCCCEEEEEEEEEECCC
Q ss_conf 6423750881----7---8898749874188739998389514898989999-999999983868846995013452789
Q gi|254781012|r 9 PDDWHLHLRD----G---EILKTVLRDTAKNFRRALVMPNIDPPIITVDDAC-AYRQRILNALPPEYDFSPLMTIYLTET 80 (349)
Q Consensus 9 ~~D~HvH~Re----g---~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~-~~~~r~~~~~~~~~~~~~~~~~~lt~~ 80 (349)
.+|+||||-. . |..+--.-|.+-|++.|++ +.++.+.+. .- .+.+...-+..+++++++.+.
T Consensus 1 ~~D~HcHL~~~~~~~~~~d~~~v~~ra~~~~v~~~v~------vg~~l~~~~W~~----~~l~~~~~g~~v~~~~G~HP~ 70 (269)
T TIGR00010 1 LIDAHCHLDLLDFEELHVDVEEVIERAKAEGVTAVVD------VGTDLEDLNWRA----LELAEKYPGDNVYAAVGVHPL 70 (269)
T ss_pred CCCCEECCCCCCCCHHCCCHHHHHHHHHHCCCEEEEE------ECCCCCCCHHHH----HHHHHHCCCCEEEEEECCCCC
T ss_conf 9110013562222122035899999999749929997------346700206999----999984799769998226872
Q ss_pred C-------CHHHHHHHH--HCCCEEEHHHCCCCCE-ECCCCCCCHHHHHHHH----HHHHHHCCCCEECCCCCCCCCCCC
Q ss_conf 9-------988998744--0687210221045510-0256541006889999----999987398222025755555430
Q gi|254781012|r 81 T-------DPDDVEKGF--TSQLVQAIKLYFAGST-TNSHHGIRNIDRVMPV----LERMETIGMPLCIHGEILNQDIDI 146 (349)
Q Consensus 81 ~-------~~~~~~~~~--~~~~~~~~k~~~~~~~-~~~~~~v~~~~~~~~~----le~~~~~~~~i~~H~E~~~~~~~~ 146 (349)
. +.+.+.+.. ....+.+++.++-.-. ..+..+ .....++ ++.+.++++|+++|+=
T Consensus 71 d~~~~~~~~~~~l~~l~~~~~~~v~AiGE~GLDY~~~~~~~e---~~~Q~e~F~~q~~lA~~~~~P~iiH~R-------- 139 (269)
T TIGR00010 71 DVEDDTKEDIKELEKLAKNAHPKVVAIGETGLDYYKADEKKE---RRRQKEVFRAQLQLAEELNLPVIIHAR-------- 139 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC---HHHHHHHHHHHHHHHHHCCCCEEEECC--------
T ss_conf 220420899999999998506954798510440430687521---789999999999999971996899788--------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCH
Q ss_conf 01467654578999996206953997057--8589999987057332023023100397886137888311321346999
Q gi|254781012|r 147 FDRELMFIDKILDPLRNKLPNLKIILEHI--TTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKRE 224 (349)
Q Consensus 147 ~~~E~~~~~~~l~~~~a~~~~~~iHi~Hi--ST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~ 224 (349)
+++........... +......--|.|. +|.+.. |+....+ ++ -+|+.++--- + .|..
T Consensus 140 -dA~~d~~~iL~~~y-~~~~~~~~g~~HCftg~~E~a---~~~ld~g-d~-~~yiSisG~v-------T-------FknA 198 (269)
T TIGR00010 140 -DAEEDVLDILREYY-AEKAPKVGGVLHCFTGDAELA---KKLLDLG-DL-LFYISISGIV-------T-------FKNA 198 (269)
T ss_pred -CHHHHHHHHHHHHH-HCCCCCCCEEEEECCCCHHHH---HHHHCCC-CE-EEEEECCCCE-------E-------EECC
T ss_conf -45799999999998-427877875798148888999---9996069-87-9999728602-------2-------1062
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHCCHHHCCC
Q ss_conf 9999999999769941897138886531332154577544543679999999972--0699999999982431788188
Q gi|254781012|r 225 KHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFE--EENKLENLESFVSINGATWYGI 301 (349)
Q Consensus 225 ~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~--~~~~L~~l~~~~s~npa~~~gl 301 (349)
..-..+.+.|=- +- -.+=||. |... |-+.-|--..|.-+..+.+..- +..+++.|.+.++.|..|+|+|
T Consensus 199 ~~l~~~v~~iP~-e~-LL~ETDS-PyLa-----P~P~RGK~N~P~~v~~v~~~iAeik~~~~ee~~~~~t~N~~~lF~~ 269 (269)
T TIGR00010 199 KSLREVVKKIPL-ER-LLVETDS-PYLA-----PVPYRGKRNEPAFVRYVVEAIAEIKGIDLEELAQITTKNAKRLFKL 269 (269)
T ss_pred HHHHHHHHHCCC-CC-CEEEECC-CCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 678999974596-43-2320167-4457-----8898898567405999999999883889999999999999998459
No 107
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=97.19 E-value=0.019 Score=34.62 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=30.4
Q ss_pred HCCCCHHHHHHHHHHCCHHHCCCCC--------CCCEEEEEECCC
Q ss_conf 2069999999998243178818898--------885289994797
Q gi|254781012|r 279 EEENKLENLESFVSINGATWYGIPV--------NTRKISLKRREQ 315 (349)
Q Consensus 279 ~~~~~L~~l~~~~s~npa~~~gl~~--------~~~~i~l~d~~~ 315 (349)
...++|+..+++.|.||||++||.. ..+|++++|.+.
T Consensus 323 ~~g~~l~eAv~mas~nPA~~lGl~~~~G~i~~G~~ADlvvld~~~ 367 (381)
T PRK11170 323 HVGIALDEALRMATLYPARAIGVDKRLGSIEAGKVANLTAFTRDF 367 (381)
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 849999999999999999980998774452899938889998999
No 108
>PRK09875 putative hydrolase; Provisional
Probab=97.11 E-value=0.022 Score=34.16 Aligned_cols=251 Identities=13% Similarity=0.136 Sum_probs=114.4
Q ss_pred CCCEEEEECC---------------C-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6642375088---------------1-78898749874188739998389514898989999999999983868846995
Q gi|254781012|r 8 VPDDWHLHLR---------------D-GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSP 71 (349)
Q Consensus 8 ~~~D~HvH~R---------------e-g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~ 71 (349)
|.+.+|=|+. + +....+-....+.|+.|++++=|-- -=-+++.+ +++.++...+.-..-
T Consensus 7 G~Tl~HEHl~id~~~~~~~~d~~ld~~~~~~~El~~~k~~Gg~tiVd~T~~g-~GRd~~~l----~~is~~tGv~IV~~T 81 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRY-MGRNAQFM----LDVMRETGINVVACT 81 (292)
T ss_pred CCCEECCCEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC-CCCCHHHH----HHHHHHCCCCEEECC
T ss_conf 6460056735247534318784436399999999999980999799778877-68599999----999997299099817
Q ss_pred EEEEEECC-------CCCHHHHHHHHHCCCEE-----EHHHCCCCCEECCCCCCCHH--HHHHHHHHHHHHCCCCEECCC
Q ss_conf 01345278-------99988998744068721-----02210455100256541006--889999999987398222025
Q gi|254781012|r 72 LMTIYLTE-------TTDPDDVEKGFTSQLVQ-----AIKLYFAGSTTNSHHGIRNI--DRVMPVLERMETIGMPLCIHG 137 (349)
Q Consensus 72 ~~~~~lt~-------~~~~~~~~~~~~~~~~~-----~~k~~~~~~~~~~~~~v~~~--~~~~~~le~~~~~~~~i~~H~ 137 (349)
+ .|..+ ....+++.+........ .+|.-.-+..+.+...+... ..++.+-.+.++.|.||.+|+
T Consensus 82 G--~y~~~~~p~~~~~~s~e~la~~~i~ei~~Gi~gT~ikaG~Igeig~~~~~it~~E~k~lrAaA~A~~~TG~pI~~Ht 159 (292)
T PRK09875 82 G--YYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHT 159 (292)
T ss_pred C--CCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECC
T ss_conf 7--78776688777617999999999999980456778352155554047898898999999999999998799768668
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf 755555430014676545789999962-0695399705785899999870573320230231003978861378883113
Q gi|254781012|r 138 EILNQDIDIFDRELMFIDKILDPLRNK-LPNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYY 216 (349)
Q Consensus 138 E~~~~~~~~~~~E~~~~~~~l~~~~a~-~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k 216 (349)
+.... . . ..++++..+ ..-.|+.|+|+-...-++++++-...+|= |-|+ . +|...+
T Consensus 160 ~~g~~------g----~-e~l~il~e~Gvd~~rVvigH~D~~~D~~~~~~la~~G~~-----l~fD---~----~G~~~~ 216 (292)
T PRK09875 160 SFSTM------G----L-EQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAY-----VQFD---T----IGKNSY 216 (292)
T ss_pred CCCCC------H----H-HHHHHHHHCCCCHHHEEEECCCCCCCHHHHHHHHHCCCE-----EEEC---C----CCCCCC
T ss_conf 88844------7----9-999999984989215789657898998999999965978-----9756---7----873024
Q ss_pred ECCCCCCHHHHH-HHHHHHHCCCCEE-EEECCCCCCCHHHHHCCCCCCCCCC-HHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 213469999999-9999997699418-9713888653133215457754454-367999999997206999999999824
Q gi|254781012|r 217 CLPIPKREKHRL-SLRKAALSGNPRF-FLGTDSAPHWDSSKESSCGCAGIYT-ARNALNCLAQIFEEENKLENLESFVSI 293 (349)
Q Consensus 217 ~nPPlR~~~dr~-aL~~ai~~G~i~d-~I~TDHAPH~~eeK~~~~~~~g~~~-~~~~~~~~~~~~~~~~~L~~l~~~~s~ 293 (349)
.| .+.|- .|.+-+..|..+- +++.|=+- ......++..|..- ...-+|.| ...+.+-+++..++-.
T Consensus 217 -~p----d~~r~~~l~~L~~~G~~drIlLS~Di~~---k~~l~~~GG~Gy~~i~~~~iP~L---~~~Gvs~~~I~~ilv~ 285 (292)
T PRK09875 217 -YP----DEKRIAMLHALRDRGLLNRVMLSMDITR---RSHLKANGGYGYDYLLTTFIPQL---RQSGFSQADVDVMLRE 285 (292)
T ss_pred -CC----HHHHHHHHHHHHHCCCCCCEEEECCHHH---HHHHHHCCCCCCHHHHHHHHHHH---HHCCCCHHHHHHHHHH
T ss_conf -97----5999999999996687552785041213---66755159997055898788999---9869999999999997
Q ss_pred CCHHHC
Q ss_conf 317881
Q gi|254781012|r 294 NGATWY 299 (349)
Q Consensus 294 npa~~~ 299 (349)
||+|+|
T Consensus 286 NP~r~F 291 (292)
T PRK09875 286 NPSQFF 291 (292)
T ss_pred CHHHHC
T ss_conf 869760
No 109
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=96.80 E-value=0.041 Score=32.46 Aligned_cols=237 Identities=18% Similarity=0.211 Sum_probs=120.5
Q ss_pred CCEEEEECC--C-HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH---CCCCCEEEEEEEEEECCCCC
Q ss_conf 642375088--1-78898749874188739998389514898989999999999983---86884699501345278999
Q gi|254781012|r 9 PDDWHLHLR--D-GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNA---LPPEYDFSPLMTIYLTETTD 82 (349)
Q Consensus 9 ~~D~HvH~R--e-g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~---~~~~~~~~~~~~~~lt~~~~ 82 (349)
.||.|+|+- - +|..+-.++.+.+-+|-..+ | . |-.|++..+++.+|.... ....+........++.+..-
T Consensus 2 ~iD~HiH~d~r~~eDlekMa~sGI~~Vit~Ahd-P--~-~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~i 77 (254)
T COG1099 2 YIDSHIHLDVRGFEDLEKMALSGIREVITLAHD-P--Y-PMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAI 77 (254)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCHHHHHHCCCC-C--C-CCCCHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCCCCC
T ss_conf 304421224344779999998381666420368-8--7-76668899999999972253168860830467733377778
Q ss_pred HHHHHHH-------HHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf 8899874-------406872102210455100256541006889999999987398222025755555430014676545
Q gi|254781012|r 83 PDDVEKG-------FTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFID 155 (349)
Q Consensus 83 ~~~~~~~-------~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~ 155 (349)
+.++... .....+.+++ -++-.+..-.....+..-|+.+++++.|+++|-= ..+-.+...
T Consensus 78 P~e~~~~l~~L~~~l~~e~VvAiG-----EiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTP--------r~nK~e~t~ 144 (254)
T COG1099 78 PPELEEVLEELEELLSNEDVVAIG-----EIGLEEATDEEKEVFREQLELARELDVPVIVHTP--------RRNKKEATS 144 (254)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEE-----ECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC--------CCCCHHHHH
T ss_conf 905999999988651647836764-----0332217888999999999999874996799678--------776056789
Q ss_pred HHHHHHHH-HHCCCEEEEECCCHHHHHH-HHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHH
Q ss_conf 78999996-2069539970578589999-987057332023023100397886137888311321346999999999999
Q gi|254781012|r 156 KILDPLRN-KLPNLKIILEHITTSNGID-YVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKA 233 (349)
Q Consensus 156 ~~l~~~~a-~~~~~~iHi~HiST~~sv~-lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~a 233 (349)
..++++.. ......+.|-|++ ++.++ ++.+.-.++..|-| -=|+..+- .+-+.+
T Consensus 145 ~ildi~~~~~l~~~lvvIDH~N-~etv~~vld~e~~vGlTvqP--gKlt~~eA--------------------veIV~e- 200 (254)
T COG1099 145 KILDILIESGLKPSLVVIDHVN-EETVDEVLDEEFYVGLTVQP--GKLTVEEA--------------------VEIVRE- 200 (254)
T ss_pred HHHHHHHHCCCCHHHEEHHCCC-HHHHHHHHHCCCEEEEEECC--CCCCHHHH--------------------HHHHHH-
T ss_conf 9999998749980121012065-87799997255357788537--76888999--------------------999998-
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCHHHCCCC
Q ss_conf 9769941897138886531332154577544543679999999972-06999999999824317881889
Q gi|254781012|r 234 ALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFE-EENKLENLESFVSINGATWYGIP 302 (349)
Q Consensus 234 i~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~-~~~~L~~l~~~~s~npa~~~gl~ 302 (349)
- |.-..++.||- .++.+. +.++|-.+...+ +++.=+.+.+..-.|..++||+.
T Consensus 201 y--~~~r~ilnSD~----------~s~~sd----~lavprtal~m~~~gv~~~~i~kV~~~NA~~~~~l~ 254 (254)
T COG1099 201 Y--GAERIILNSDA----------GSAASD----PLAVPRTALEMEERGVGEEEIEKVVRENALSFYGLS 254 (254)
T ss_pred H--CCCEEEEECCC----------CCCCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 1--86629983665----------544366----202159999999805779999999999899985769
No 110
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=96.70 E-value=0.049 Score=32.02 Aligned_cols=263 Identities=16% Similarity=0.154 Sum_probs=134.6
Q ss_pred EEEECCCCEEEEECCCHHHHHHHHHHHCCCCEEEEE---CCC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 558646642375088178898749874188739998---389--514898989999999999983868846995013452
Q gi|254781012|r 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALV---MPN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYL 77 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~---MPN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~l 77 (349)
+|+--|++|.|+||=-..... .|.+.|+||.+. =|. |+-.++|+- .++..|.+++.. .+..++++.+.-
T Consensus 125 ~I~TAGGiDtHiHfI~Pqqi~---~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG--~w~i~rMl~a~d-~~p~N~g~lgKG 198 (568)
T COG0804 125 KIVTAGGIDTHIHFICPQQIE---EALASGITTMIGGGTGPADGTNATTCTPG--PWHIARMLQAAD-GLPMNIGFLGKG 198 (568)
T ss_pred EEEEECCCCCEEEEECHHHHH---HHHHCCCEEEECCCCCCCCCCCCCCCCCC--HHHHHHHHHHHH-CCCEEEEEEECC
T ss_conf 389605532126886678899---99863867886486687777654011587--879999998622-485356776247
Q ss_pred CCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 78999889987440687210221045510025654100688999999998739822202575555543001467654578
Q gi|254781012|r 78 TETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKI 157 (349)
Q Consensus 78 t~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~ 157 (349)
...+ ...+.+.... ...++|+- .|.|. ....+.-+|..+-+.|..+.+|...- +|+-+++..
T Consensus 199 n~s~-~~~L~Eqi~a-Ga~GlKlH-------EDWG~-TpaaI~~~L~VAD~~DvqVaiHtDTL--------NEsGfvEdT 260 (568)
T COG0804 199 NASN-PAPLAEQIEA-GAIGLKLH-------EDWGA-TPAAIDTCLSVADEYDVQVAIHTDTL--------NESGFVEDT 260 (568)
T ss_pred CCCC-CHHHHHHHHH-CCCEEEEE-------CCCCC-CHHHHHHHHHHHHHHCEEEEEEECCC--------CCCCCHHHH
T ss_conf 7789-5668999860-54135761-------11489-87999988764331163799960665--------433413768
Q ss_pred HHHHHHHHCCCEEEEECCCHH---HHHHHHHHCC--CCC-EEE-------------------ECCCCCCC-HHHHHCCCC
Q ss_conf 999996206953997057858---9999987057--332-023-------------------02310039-788613788
Q gi|254781012|r 158 LDPLRNKLPNLKIILEHITTS---NGIDYVNNAT--NIA-GSI-------------------TVHHLIIN-RNAIFHDGL 211 (349)
Q Consensus 158 l~~~~a~~~~~~iHi~HiST~---~sv~lir~ak--~vt-aEV-------------------TPHHL~lt-~~d~~~~~~ 211 (349)
++ .+.|--+|--|.--+ -+-|+||-+. +|- ..+ -+|||--+ -+|+
T Consensus 261 i~----A~~gRtIHtyHtEGAGGGHAPDiikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDv----- 331 (568)
T COG0804 261 IA----AIKGRTIHTYHTEGAGGGHAPDIIKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDV----- 331 (568)
T ss_pred HH----HHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH-----
T ss_conf 98----745955677631677887762799870578767678899878451647876304000214898982022-----
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC--------
Q ss_conf 8311321346999999999999976-9941897138886531332154577544543679999999972069--------
Q gi|254781012|r 212 NPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEEN-------- 282 (349)
Q Consensus 212 ~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~-------- 282 (349)
.+.-.-||.+ -.|--+-|-| |-+ -+|+||..-- |--| ..+.-.++.-...-..++
T Consensus 332 ---aFAeSRIR~e--TIAAEdiLhDmGaf-SmisSDSQAM---------GRvG-Evi~RtwQtA~kmK~qrG~L~~d~~~ 395 (568)
T COG0804 332 ---AFAESRIRPE--TIAAEDILHDMGAF-SMISSDSQAM---------GRVG-EVITRTWQTADKMKKQRGALPEDAGG 395 (568)
T ss_pred ---HHHHHCCCHH--HHHHHHHHHHCCCE-EEECCCHHHH---------HCCC-HHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf ---2445134456--66678877640336-7751605763---------0101-64556888888899862899887787
Q ss_pred ----CHHHHHHHHHHCCHHHCCCC--------CCCCEEEEEECC
Q ss_conf ----99999999824317881889--------888528999479
Q gi|254781012|r 283 ----KLENLESFVSINGATWYGIP--------VNTRKISLKRRE 314 (349)
Q Consensus 283 ----~L~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~~ 314 (349)
...|.+.+.+.|||---|+. +.-+|++|++|.
T Consensus 396 nDN~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~Pa 439 (568)
T COG0804 396 NDNFRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPA 439 (568)
T ss_pred CCCHHHHHHHHHEECCHHHHCCCCHHCCCEECCCEEEEEEECHH
T ss_conf 74177865545433177785463001054402421335640444
No 111
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.051 Score=31.91 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=102.5
Q ss_pred CCCEEEEECCC----HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC--
Q ss_conf 66423750881----788987498741887399983895148989899999999999838688469950134527899--
Q gi|254781012|r 8 VPDDWHLHLRD----GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTETT-- 81 (349)
Q Consensus 8 ~~~D~HvH~Re----g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~-- 81 (349)
-.||.|+|+-. +|...--..|..-|++.++. +-++.+....-.+ ++.... ..+.+.++.+..
T Consensus 2 ~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~------~g~~~~~~~~~~~--la~~y~----~v~~~~G~HP~~~~ 69 (256)
T COG0084 2 MLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVV------VGTDLEDFKRALE--LAEKYP----NVYAAVGVHPLDAD 69 (256)
T ss_pred CCEEEEECCCCHHHCCCHHHHHHHHHHCCCCEEEE------EECCHHHHHHHHH--HHHHCC----CEEEEEEECCCCCC
T ss_conf 62785057880332689999999999859937999------6158888899999--998689----86899866887333
Q ss_pred C--HH---HHHHHHHC-CCEEEHHHCCCCCEECCCCCCCHHHHH----HHHHHHHHHCCCCEECCCCCCCCCCCCHHHHH
Q ss_conf 9--88---99874406-872102210455100256541006889----99999998739822202575555543001467
Q gi|254781012|r 82 D--PD---DVEKGFTS-QLVQAIKLYFAGSTTNSHHGIRNIDRV----MPVLERMETIGMPLCIHGEILNQDIDIFDREL 151 (349)
Q Consensus 82 ~--~~---~~~~~~~~-~~~~~~k~~~~~~~~~~~~~v~~~~~~----~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~ 151 (349)
. .+ .+...... ..+.+++..+-. ....... +.... .+-++.+.++++|+++|+=+ +..
T Consensus 70 ~~~~~~~~~l~~~~~~~~~vvaIGEiGLD--y~~~~~~-~~~~Q~~~F~~ql~lA~~~~lPviIH~R~---------A~~ 137 (256)
T COG0084 70 EHSEEDLEELEQLAEHHPKVVAIGEIGLD--YYWDKEP-DKERQEEVFEAQLELAKELNLPVIIHTRD---------AHE 137 (256)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCC--CCCCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEECCC---------CHH
T ss_conf 36788999999987218985899833468--5656664-47899999999999999739977998674---------279
Q ss_pred HHHHHHHHHHHHHH--CCCEEEEECCCHHHHH-HHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHH
Q ss_conf 65457899999620--6953997057858999-99870573320230231003978861378883113213469999999
Q gi|254781012|r 152 MFIDKILDPLRNKL--PNLKIILEHITTSNGI-DYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRL 228 (349)
Q Consensus 152 ~~~~~~l~~~~a~~--~~~~iHi~HiST~~sv-~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~ 228 (349)
. .++++.... .+.-+| |.-.+.+.. +++..+ .|+.++ |...+ -+.++-|+
T Consensus 138 d----~~~iL~~~~~~~~gi~H-cFsGs~e~a~~~~d~G---------~yisis---------G~itf----k~a~~~~e 190 (256)
T COG0084 138 D----TLEILKEEGAPVGGVLH-CFSGSAEEARKLLDLG---------FYISIS---------GIVTF----KNAEKLRE 190 (256)
T ss_pred H----HHHHHHHCCCCCCEEEE-CCCCCHHHHHHHHHCC---------EEEEEC---------CEEEC----CCCHHHHH
T ss_conf 9----99999864878888998-3789799999999769---------289978---------66641----78588999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHCCHHHCCC
Q ss_conf 999999769941897138886531332154577544543679999999972--0699999999982431788188
Q gi|254781012|r 229 SLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFE--EENKLENLESFVSINGATWYGI 301 (349)
Q Consensus 229 aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~--~~~~L~~l~~~~s~npa~~~gl 301 (349)
.+..-=.| - -.+-||. |...- .+-.|--+.|..+..+.+..- ++.+.+.+.+.++.|-.++||+
T Consensus 191 v~~~iPld-r--LL~ETDs-Pyl~P-----~p~rGkrNeP~~v~~v~~~iAelk~~~~eeva~~t~~N~~~lf~~ 256 (256)
T COG0084 191 VARELPLD-R--LLLETDA-PYLAP-----VPYRGKRNEPAYVRHVAEKLAELKGISAEEVAEITTENAKRLFGL 256 (256)
T ss_pred HHHHCCHH-H--EEECCCC-CCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99959976-7--6864579-88888-----777999999647999999999875979999999999999998568
No 112
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM; InterPro: IPR012696 This family consists of proteins from in the PhnM family. PhnM is a protein associated with phosphonate utilization in a number of bacterial species. Pseudomonas stutzeri WM88, has a related protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound), which is not contained in this entry..
Probab=96.67 E-value=0.0061 Score=37.60 Aligned_cols=280 Identities=13% Similarity=0.065 Sum_probs=137.7
Q ss_pred EEEECCCCEEEEECCC-------H-------HHHHHHHHHHCCCCEEEEE---CC---CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5586466423750881-------7-------8898749874188739998---38---9514898989999999999983
Q gi|254781012|r 3 KISLRVPDDWHLHLRD-------G-------EILKTVLRDTAKNFRRALV---MP---NIDPPIITVDDACAYRQRILNA 62 (349)
Q Consensus 3 ~l~lp~~~D~HvH~Re-------g-------~~~~~t~aa~aGG~TtV~~---MP---NT~Ppi~t~e~~~~~~~r~~~~ 62 (349)
.+++||+||+|+=.=| | -+..--+..++-|+||||+ .= .+.++..+.+.+....+-|.+.
T Consensus 49 ~~llPGlidLHtD~~E~~~~PRPgV~wp~~~A~~~~D~~l~~~GITTVfdal~~~~~~~~~~g~~~~~~~~~~idaI~~~ 128 (391)
T TIGR02318 49 DLLLPGLIDLHTDNLERHMSPRPGVDWPIDAAVVEHDKQLAAAGITTVFDALALGKASDTESGGRRAENLRRMIDAIEEA 128 (391)
T ss_pred CEECCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 73477401010344101027768872598999999889998658135444341234211156657866799999999867
Q ss_pred CCC---CCEEEEEEEEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCC
Q ss_conf 868---84699501345278999889987440687210221045510025654100688999999998739822202575
Q gi|254781012|r 63 LPP---EYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEI 139 (349)
Q Consensus 63 ~~~---~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~ 139 (349)
... ..+...+.=+-+......+.+.+...... ..+-..|..+.+.-. ..+.+.+. .-+.++.+.. +.-.|-
T Consensus 129 ~~~gll~adH~lHlRcE~~~~~~~~~~~~~~~~~~-v~L~SlMDHtPGQrQ--~~~~~~yr--~~~~~k~grv-lsd~~~ 202 (391)
T TIGR02318 129 RDRGLLRADHRLHLRCELPNEEVLPELEELIDDPR-VDLISLMDHTPGQRQ--FRDLEKYR--EYYQKKRGRV-LSDDEF 202 (391)
T ss_pred HHCCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCC-CEEEEEECCCCHHHC--CHHHHHHH--HHHHHHHCCC-CCHHHH
T ss_conf 65687055200000000688768999999717997-018886068870110--11257899--9872452674-589999
Q ss_pred CCCCCCCHHHHHHHH--HHHHH--HHHHHHCCCEEEEECC-CHHHHHHHHHHCC------CCCEEEE--CCCCCCCHHHH
Q ss_conf 555543001467654--57899--9996206953997057-8589999987057------3320230--23100397886
Q gi|254781012|r 140 LNQDIDIFDRELMFI--DKILD--PLRNKLPNLKIILEHI-TTSNGIDYVNNAT------NIAGSIT--VHHLIINRNAI 206 (349)
Q Consensus 140 ~~~~~~~~~~E~~~~--~~~l~--~~~a~~~~~~iHi~Hi-ST~~sv~lir~ak------~vtaEVT--PHHL~lt~~d~ 206 (349)
...-.....++..+. ...|. ..+++..+..+= +|= .|.+-|...+... ++|.|+- .|-|=+. -+
T Consensus 203 ~~~~~~r~~~~~~~~~~~~~r~~i~ala~~~~i~lA-SHDD~T~e~V~e~~~~Gv~isEFPtT~EAA~~Ar~~G~~--~l 279 (391)
T TIGR02318 203 DEIVEERIARSAEYADVEANRSEIAALARARGIPLA-SHDDDTPEHVAEAHDLGVTISEFPTTLEAAKEARSLGMQ--IL 279 (391)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEE-CCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHHHHCCCE--EE
T ss_conf 999999999735863258999999999985799532-468888889988875782674042348999999876980--89
Q ss_pred HCCCCCCCEEECCCCCCHHH--HHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 13788831132134699999--9999999976994189713888653133215457754454367999999997206999
Q gi|254781012|r 207 FHDGLNPHYYCLPIPKREKH--RLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKL 284 (349)
Q Consensus 207 ~~~~~~~~~k~nPPlR~~~d--r~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L 284 (349)
- +-||. +|..++ .-+=++.+..|-. |+|+||=-|-+. ..+.--|..-..+.++|
T Consensus 280 M---GAPN~-----vRGgSHSGN~sA~ela~~Gll-DvL~SDY~P~SL---------------L~AaF~La~~~~~~~~L 335 (391)
T TIGR02318 280 M---GAPNI-----VRGGSHSGNVSARELAQEGLL-DVLASDYVPASL---------------LLAAFQLADDVEGIIDL 335 (391)
T ss_pred E---ECCCC-----EECCCCCHHHHHHHHHHHCCC-CEEECCCCCHHH---------------HHHHHHHHHHCCCCCCH
T ss_conf 6---08852-----017750268999999970873-064012201345---------------57887502212677578
Q ss_pred HHHHHHHHHCCHHHCCCC--------CCCCEEEEEEC-CC
Q ss_conf 999999824317881889--------88852899947-97
Q gi|254781012|r 285 ENLESFVSINGATWYGIP--------VNTRKISLKRR-EQ 315 (349)
Q Consensus 285 ~~l~~~~s~npa~~~gl~--------~~~~~i~l~d~-~~ 315 (349)
.+-+++.|.|||+..||. ++.||+++|+. +.
T Consensus 336 ~~A~~lvT~nPA~a~GL~DdRG~I~~G~RADl~~v~~~~~ 375 (391)
T TIGR02318 336 PEAVKLVTKNPARAVGLSDDRGSIAPGKRADLVRVHRRED 375 (391)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCC
T ss_conf 9999998654798628888863014785044898860558
No 113
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=96.28 E-value=0.046 Score=32.18 Aligned_cols=138 Identities=15% Similarity=0.199 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEC
Q ss_conf 88999999998739822202575555543001467654578999996206953997057858999998705733202302
Q gi|254781012|r 117 DRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITV 196 (349)
Q Consensus 117 ~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTP 196 (349)
..+....+.+++.+.++.+|.-..... .+...++. ...-....-+|-+|++.. .++++++. +++.-.||
T Consensus 125 ~~~~~~~~~a~~~~~~i~~H~~E~~~~-----~~~~~~~~----~~~l~~~ll~H~v~l~d~-ei~lla~~-g~~vahcP 193 (263)
T cd01305 125 VDLEDILELLRRRGKLFAIHASETRES-----VGMTDIER----ALDLEPDLLVHGTHLTDE-DLELVREN-GVPVVLCP 193 (263)
T ss_pred HHHHHHHHHHHHCCCCEEECCCCCCCC-----CCCCHHHH----HHHCCCCEEEECCCCCHH-HHHHHHHC-CCCEEECH
T ss_conf 459999999997799689886897120-----36559999----984699889973789999-99999974-99689884
Q ss_pred -CCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf -3100397886137888311321346999999999999976994189713888653133215457754454367999999
Q gi|254781012|r 197 -HHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLA 275 (349)
Q Consensus 197 -HHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~ 275 (349)
-.+.|- . |. ||++ +.+..|.. -.||||-+.-.- ..++..--...++.
T Consensus 194 ~SN~~lg------~--G~-----~pi~---------~~~~~Gi~-v~LGTD~~asn~---------~dm~~emr~a~~~~ 241 (263)
T cd01305 194 RSNLYFG------V--GI-----PPVA---------ELLKLGIK-VLLGTDNVMVNE---------PDMWAEMEFLAKYS 241 (263)
T ss_pred HHHHHHC------C--CC-----CCHH---------HHHHCCCC-EEEECCCCCCCC---------CCHHHHHHHHHHHH
T ss_conf 8787644------7--88-----8889---------99978994-899648886688---------16999999999985
Q ss_pred HHHHCCCCHHHHHHHHHHCCHHH
Q ss_conf 99720699999999982431788
Q gi|254781012|r 276 QIFEEENKLENLESFVSINGATW 298 (349)
Q Consensus 276 ~~~~~~~~L~~l~~~~s~npa~~ 298 (349)
. .....+-.++.++.+.|+||+
T Consensus 242 ~-~~~~~~a~~vl~mAT~~GAk~ 263 (263)
T cd01305 242 R-LQGYLSPLEILRMATVNAAEF 263 (263)
T ss_pred C-CCCCCCHHHHHHHHHHHCCCC
T ss_conf 7-678999999999981130279
No 114
>pfam02126 PTE Phosphotriesterase family.
Probab=96.25 E-value=0.092 Score=30.31 Aligned_cols=244 Identities=13% Similarity=0.158 Sum_probs=105.3
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC-------CCCHHHHHHHHHCCCE
Q ss_conf 874987418873999838951489898999999999998386884699501345278-------9998899874406872
Q gi|254781012|r 23 KTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTE-------TTDPDDVEKGFTSQLV 95 (349)
Q Consensus 23 ~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~-------~~~~~~~~~~~~~~~~ 95 (349)
.+-+...+-|+.||+++-+.- -=-+++.+ +++.++... .+...-..|.-+ ..+.+++.+.......
T Consensus 42 ~el~~fk~~Gg~tiVd~T~~g-~GRd~~~l----~~is~~tGv--~IV~~TG~y~~~~~p~~~~~~s~e~la~~~i~ei~ 114 (308)
T pfam02126 42 EELLYLKARGVRTIVENTTTG-LGRDVHTL----AWVARATGV--HIVAATGLYVDADHPLATRLRSVEELTDVFVREIE 114 (308)
T ss_pred HHHHHHHHHCCCEEEECCCCC-CCCCHHHH----HHHHHHCCC--EEEECCCCCCCCCCCHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999982898799568977-68699999----999996398--39974766678769876662699999999999998
Q ss_pred E-----EHHHCCCCCEECCCCCCCHH--HHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCC
Q ss_conf 1-----02210455100256541006--889999999987398222025755555430014676545789999962-069
Q gi|254781012|r 96 Q-----AIKLYFAGSTTNSHHGIRNI--DRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNK-LPN 167 (349)
Q Consensus 96 ~-----~~k~~~~~~~~~~~~~v~~~--~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~-~~~ 167 (349)
. ++|.-.-+.-+ +..++... ..++.+-.+.+++|.||.+|.+-... . ....++++..+ ..-
T Consensus 115 ~Gi~~T~ikaG~Ik~~~-~~~~it~~E~k~lrAaA~A~~~TG~pI~~H~~~~~~-----~-----~~e~l~il~e~Gvd~ 183 (308)
T pfam02126 115 HGIDGTGIKAGIIGEIG-TSWKLTPSEEKVLEAAAHAHAQTGCPVSTHTGASPR-----A-----GLQQIRILQEEGVDL 183 (308)
T ss_pred HCCCCCCCCCEEEEEEC-CCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCC-----C-----HHHHHHHHHHCCCCH
T ss_conf 43668874520788830-589998789999999999999769937970798755-----5-----199999999859894
Q ss_pred CEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCC--CCHHHHHHHHHHHH-CCCCE-EEE
Q ss_conf 539970578589999987057332023023100397886137888311321346--99999999999997-69941-897
Q gi|254781012|r 168 LKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIP--KREKHRLSLRKAAL-SGNPR-FFL 243 (349)
Q Consensus 168 ~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPl--R~~~dr~aL~~ai~-~G~i~-d~I 243 (349)
.|+.|+|+-...-+++.++--..+|=+ -|+ ..+.. ...+..+|-+ .+.++|-.++..+. .|..+ -++
T Consensus 184 ~rvvigH~D~~~D~~y~~~la~~G~~l-----~fD---~~G~~-~~~~~~~~~~~~~~d~~r~~~i~~Li~~Gy~drIlL 254 (308)
T pfam02126 184 SRVVIGHCDDIDDLKYLLELAALGCYL-----GYD---LFGTE-LLGYQLSPDIDIPPDQKRIRRVHALVDRGYEDRILL 254 (308)
T ss_pred HHEEEECCCCCCCHHHHHHHHHCCCEE-----EEC---CCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 467885268889989999999749789-----853---56621-233444555689998999999999997798574897
Q ss_pred ECCCCCCCHHHHHCCCCCCCC---CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHC
Q ss_conf 138886531332154577544---54367999999997206999999999824317881
Q gi|254781012|r 244 GTDSAPHWDSSKESSCGCAGI---YTARNALNCLAQIFEEENKLENLESFVSINGATWY 299 (349)
Q Consensus 244 ~TDHAPH~~eeK~~~~~~~g~---~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~ 299 (349)
+.|=+=-.. ..+++.-|. +-...-+|.| ...+++-+++.+++..||+|+|
T Consensus 255 S~D~~~k~~---~~~~gg~g~g~~~i~~~~iP~L---~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T pfam02126 255 SHDITTKFR---SMKYGGHGYSPDLILTNVIPKL---RQRGVTQEVLDKILVENPKQFL 307 (308)
T ss_pred ECCCCCCCC---CEECCCCCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHCHHHHC
T ss_conf 256454002---1013898864688999888999---9869999999999987869762
No 115
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=95.06 E-value=0.26 Score=27.48 Aligned_cols=242 Identities=13% Similarity=0.098 Sum_probs=105.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC-------CCCHHHHHHHHHCC
Q ss_conf 89874987418873999838951489898999999999998386884699501345278-------99988998744068
Q gi|254781012|r 21 ILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTE-------TTDPDDVEKGFTSQ 93 (349)
Q Consensus 21 ~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~-------~~~~~~~~~~~~~~ 93 (349)
...+-....+-|..|++++=+-- -=-+++.+ +++.++...+ +...-..|..+ +...+++.+.....
T Consensus 34 ~~~el~~~k~~Gg~tiVD~T~~g-~GRd~~~L----~~is~~tgv~--IV~~TG~y~~~~~p~~~~~~s~e~la~~~v~e 106 (293)
T cd00530 34 AKEELKRFRAHGGRTIVDATPPG-IGRDVEKL----AEVARATGVN--IVAATGFYKDAFYPEWVRLRSVEELTDMLIRE 106 (293)
T ss_pred HHHHHHHHHHHCCCEEEECCCCC-CCCCHHHH----HHHHHHCCCE--EEECCCCCCCCCCCHHHHHCCHHHHHHHHHHH
T ss_conf 99999999984898799547866-67699999----9999963982--89678788776689788706899999999999
Q ss_pred CEE-----EHHHCCCCCEECCCCCCCHH--HHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-H
Q ss_conf 721-----02210455100256541006--889999999987398222025755555430014676545789999962-0
Q gi|254781012|r 94 LVQ-----AIKLYFAGSTTNSHHGIRNI--DRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNK-L 165 (349)
Q Consensus 94 ~~~-----~~k~~~~~~~~~~~~~v~~~--~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~-~ 165 (349)
... .+|.-.-+.-+ +..++... ..++.+-.+.+++|.||.+|++..... . . .+++++.+. .
T Consensus 107 i~~Gi~gT~ikaG~Ik~~~-~~~~it~~E~k~lrAaA~A~~~TG~pI~~Ht~~g~~~-----~----~-e~~~il~~~G~ 175 (293)
T cd00530 107 IEEGIEGTGIKAGIIKEAG-GSPAITPLEEKVLRAAARAQKETGVPISTHTQAGLTM-----G----L-EQLRILEEEGV 175 (293)
T ss_pred HHHCCCCCCCCCCEEEECC-CCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC-----C----H-HHHHHHHHCCC
T ss_conf 9840468883420687614-6899988999999999999998798289827988653-----0----9-99999998598
Q ss_pred CCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHH-HHHHHCCCCEE-EE
Q ss_conf 69539970578589999987057332023023100397886137888311321346999999999-99997699418-97
Q gi|254781012|r 166 PNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSL-RKAALSGNPRF-FL 243 (349)
Q Consensus 166 ~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL-~~ai~~G~i~d-~I 243 (349)
.-.|+.|+|+---.-+++.++--..+| +|-|+ . +|.. +.+...+-++|-.+ .+.+..|..+- ++
T Consensus 176 d~~rvvigH~D~~~D~~~~~~la~~G~-----~l~fD---~----~G~~--~~~~~~~d~~r~~~l~~Li~~G~~d~ill 241 (293)
T cd00530 176 DPSKVVIGHLDRNDDPDYLLKIAALGA-----YLEFD---G----IGKD--KIFGYPSDETRADAVKALIDEGYGDRLLL 241 (293)
T ss_pred CHHHEEEECCCCCCCHHHHHHHHHCCC-----EEEEC---C----CCCC--CCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 922578963689899999999997698-----89877---7----8701--35789998999999999997787573898
Q ss_pred ECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHCCHHHC
Q ss_conf 1388865313321545775445436799999999-7206999999999824317881
Q gi|254781012|r 244 GTDSAPHWDSSKESSCGCAGIYTARNALNCLAQI-FEEENKLENLESFVSINGATWY 299 (349)
Q Consensus 244 ~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~-~~~~~~L~~l~~~~s~npa~~~ 299 (349)
+.|-+=.+.-.+ .+|.. |..+.+--+... .....+-+++.+++..||+|+|
T Consensus 242 S~D~~~~~~~~~--~~Gg~---Gy~~i~~~~iP~L~~~Gv~~~~i~~ilv~NP~r~L 293 (293)
T cd00530 242 SHDVFRKSYLEK--RYGGH---GYDYILTRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred ECCCCCHHHHHH--HCCCC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHC
T ss_conf 544121555654--07999---87889998999999869999999999986979659
No 116
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.14 Score=29.16 Aligned_cols=76 Identities=22% Similarity=0.153 Sum_probs=51.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC---
Q ss_conf 99999999976994189713888653133215457754454367999999997206999999999824317881889---
Q gi|254781012|r 226 HRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGIP--- 302 (349)
Q Consensus 226 dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~--- 302 (349)
-.-+-.+....|.. |+++||=-|.+.= .+.-.+++. ...++|.+-+.+.|.|||+.+||.
T Consensus 282 GNvsA~ela~~glL-DiLsSDY~P~SLl---------------~A~F~La~~-~~~~~lpqAvalvt~nPA~algl~DRG 344 (377)
T COG3454 282 GNVSARELAQHGLL-DILSSDYVPASLL---------------HAAFRLADL-GSNISLPQAVALVTKNPARALGLTDRG 344 (377)
T ss_pred CCHHHHHHHHCCCE-EEECCCCCCHHHH---------------HHHHHHHHH-HCCCCHHHHHHHHCCCHHHHCCCCCCC
T ss_conf 40659999868861-5523467738888---------------888998664-025678999999606978861977466
Q ss_pred ----CCCCEEEEEECCCCEE
Q ss_conf ----8885289994797178
Q gi|254781012|r 303 ----VNTRKISLKRREQPII 318 (349)
Q Consensus 303 ----~~~~~i~l~d~~~~~~ 318 (349)
+..+|++.+++.....
T Consensus 345 ~Ia~GlrADlv~v~~~~~vp 364 (377)
T COG3454 345 RIAPGLRADLVRVRRDGGVP 364 (377)
T ss_pred CCCCCCCCCEEEEECCCCCC
T ss_conf 50566434458973279975
No 117
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=92.69 E-value=0.76 Score=24.66 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHCC-CCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEE
Q ss_conf 0688999999998739-822202575555543001467654578999996206953997057858999998705733202
Q gi|254781012|r 115 NIDRVMPVLERMETIG-MPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGS 193 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~-~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaE 193 (349)
......++|..+++.+ ..+.+||-..... +. +...+... +.+-|.=+.+ +...+-++.+++ ++|..|
T Consensus 151 ~~~~f~~~~~~a~~~g~l~~t~HaGE~~~~------~~--i~~al~l~-a~RIGHG~~~--~~d~~L~~~l~~-~~I~lE 218 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNR------EE--LLQALLLL-PDRIGHGIFL--LKHPELIYLVKL-RNIPIE 218 (305)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCCCH------HH--HHHHHHHH-HHHCCCHHHH--CCHHHHHHHHHH-CCCEEE
T ss_conf 869999999999964998356415877977------89--99999845-5522531211--318999999984-595599
Q ss_pred EECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 30231003978861378883113213469999999999999769941897138886531332154577544543679999
Q gi|254781012|r 194 ITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNC 273 (349)
Q Consensus 194 VTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~ 273 (349)
|||-==..+ ++-|.++. + =+.+-+..|.. ..|.||--. +++....-.+
T Consensus 219 vCPtSN~~~-------------~~~~~~~~--H--P~~~l~~~Gv~-vtinTDDp~--------------~f~t~Ls~Ey 266 (305)
T cd00443 219 VCPTSNVVL-------------GTVQSYEK--H--PFMRFFKAGLP-VSLSTDDPG--------------IFGTSLSEEY 266 (305)
T ss_pred ECCCCCHHC-------------CCCCCCCC--C--HHHHHHHCCCC-EEEECCCCC--------------HHCCCHHHHH
T ss_conf 887520121-------------56788677--8--79999988990-999589940--------------1089889999
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCHHHC
Q ss_conf 99997206999999999824317881
Q gi|254781012|r 274 LAQIFEEENKLENLESFVSINGATWY 299 (349)
Q Consensus 274 ~~~~~~~~~~L~~l~~~~s~npa~~~ 299 (349)
......-..+.+.+.++ +.|..+.-
T Consensus 267 ~~~~~~~~l~~~~l~~l-~~nai~~s 291 (305)
T cd00443 267 SLAAKTFGLTFEDLCEL-NRNSVLSS 291 (305)
T ss_pred HHHHHHHCCCHHHHHHH-HHHHHHHH
T ss_conf 99999809699999999-99999987
No 118
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=91.62 E-value=1 Score=23.89 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=5.1
Q ss_pred CCCHHHHHHHHHHCC
Q ss_conf 578589999987057
Q gi|254781012|r 174 HITTSNGIDYVNNAT 188 (349)
Q Consensus 174 HiST~~sv~lir~ak 188 (349)
+.||.+++++.+.++
T Consensus 78 ~~~t~~~i~~a~~A~ 92 (284)
T cd00950 78 SNNTAEAIELTKRAE 92 (284)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 778999999999999
No 119
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.21 E-value=1.1 Score=23.62 Aligned_cols=124 Identities=13% Similarity=0.109 Sum_probs=59.3
Q ss_pred CCEEEEECC----C-----HHHHHHHHHHHCCCCEEEEECC-CCCCCCCCHHHHH-HHHH---HHHHHCCCCCEEEEEEE
Q ss_conf 642375088----1-----7889874987418873999838-9514898989999-9999---99983868846995013
Q gi|254781012|r 9 PDDWHLHLR----D-----GEILKTVLRDTAKNFRRALVMP-NIDPPIITVDDAC-AYRQ---RILNALPPEYDFSPLMT 74 (349)
Q Consensus 9 ~~D~HvH~R----e-----g~~~~~t~aa~aGG~TtV~~MP-NT~Ppi~t~e~~~-~~~~---r~~~~~~~~~~~~~~~~ 74 (349)
+||.|.|.= | ++...--+.|..-|+|++++-| -..|.-+|+.... ++.. .+.+....+..+.++.-
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQE 80 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQE 80 (254)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCE
T ss_conf 94501346678788987589999999999975760795133324776689199999999999988886267826616866
Q ss_pred EEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCC-CCEECCCCC
Q ss_conf 45278999889987440687210221045510025654100688999999998739-822202575
Q gi|254781012|r 75 IYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIG-MPLCIHGEI 139 (349)
Q Consensus 75 ~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~-~~i~~H~E~ 139 (349)
..++... ......+.+.++--..--..-++...+... ..+.|=.++..| .|++.|+|-
T Consensus 81 IrIt~~v-----l~~l~~g~I~tindskYlLIEF~~~~v~~y--a~~lf~elq~kGi~PIIAHPER 139 (254)
T COG4464 81 IRITGDV-----LDDLDKGIILTINDSKYLLIEFPMNHVPRY--ADQLFFELQSKGIIPIIAHPER 139 (254)
T ss_pred EEECHHH-----HHHHHCCCCCCCCCCCEEEEECCCCCCHHH--HHHHHHHHHHCCCEEEEECHHH
T ss_conf 8975088-----878762843403366349997468862245--9999999997795036646256
No 120
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=91.11 E-value=1.1 Score=23.56 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=6.6
Q ss_pred ECCCHHHHHHHHHHCCCC
Q ss_conf 057858999998705733
Q gi|254781012|r 173 EHITTSNGIDYVNNATNI 190 (349)
Q Consensus 173 ~HiST~~sv~lir~ak~v 190 (349)
.+.||.+++++.+.+++.
T Consensus 74 ~~~s~~~~~~~a~~a~~~ 91 (281)
T cd00408 74 GANSTREAIELARHAEEA 91 (281)
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 878899999999999975
No 121
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=90.52 E-value=1.3 Score=23.23 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=9.9
Q ss_pred EEECCCHHHHHHHHHHCCCCCE
Q ss_conf 9705785899999870573320
Q gi|254781012|r 171 ILEHITTSNGIDYVNNATNIAG 192 (349)
Q Consensus 171 Hi~HiST~~sv~lir~ak~vta 192 (349)
++.+.||++++++.+.++..++
T Consensus 76 gv~~~~t~~~i~~a~~A~~~Ga 97 (292)
T PRK03170 76 GTGSNSTAEAIELTKFAEKAGA 97 (292)
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
T ss_conf 3787679999999998987599
No 122
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM; InterPro: IPR012696 This family consists of proteins from in the PhnM family. PhnM is a protein associated with phosphonate utilization in a number of bacterial species. Pseudomonas stutzeri WM88, has a related protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound), which is not contained in this entry..
Probab=89.25 E-value=0.16 Score=28.79 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=7.3
Q ss_pred EEEE-ECCCHHHHHHHHH
Q ss_conf 3997-0578589999987
Q gi|254781012|r 169 KIIL-EHITTSNGIDYVN 185 (349)
Q Consensus 169 ~iHi-~HiST~~sv~lir 185 (349)
++|+ |-++..+.++.+.
T Consensus 139 ~lHlRcE~~~~~~~~~~~ 156 (391)
T TIGR02318 139 RLHLRCELPNEEVLPELE 156 (391)
T ss_pred EEEEEECCCCHHHHHHHH
T ss_conf 000000068876899999
No 123
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=88.67 E-value=1.8 Score=22.35 Aligned_cols=239 Identities=15% Similarity=0.163 Sum_probs=121.3
Q ss_pred ECCCCEEEEECCC---------------------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6466423750881---------------------7889874987418873999838951489898999999999998386
Q gi|254781012|r 6 LRVPDDWHLHLRD---------------------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALP 64 (349)
Q Consensus 6 lp~~~D~HvH~Re---------------------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~ 64 (349)
-...||.|-|+=+ +|+.. ....+|=..+|...+|-. +.|+...+....+ ..+...
T Consensus 6 ~~~~IDtH~Hl~~~~~~~~pw~~~~~~~~~d~~~~dY~~--~~~~~gv~~~V~vq~~~~-~~D~~~e~~~v~~-~~~~~g 81 (279)
T COG3618 6 PQMIIDTHAHLWDPGALPYPWLADYEALRRDYLFEDYLA--LLKAHGVSGGVLVQVNVD-PRDNEKELAFVAE-LAERHG 81 (279)
T ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH--HHHHCCCCEEEEEECCCC-CCCHHHHHHHHHH-HHHHHC
T ss_conf 345402134653566557888776666678989899999--987548640699943667-6655999999996-477518
Q ss_pred CCCEEEEEEEEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCC
Q ss_conf 88469950134527899988998744068721022104551002565410068899999999873982220257555554
Q gi|254781012|r 65 PEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDI 144 (349)
Q Consensus 65 ~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~ 144 (349)
. +.+....+..+ -...+.+.. -..+.++.....+. -++......+++.++.++++|..+-++=--..
T Consensus 82 ~---~vg~id~~~~e--~~a~L~~~~-~~~~~GvR~~l~~~----p~~~~~a~~~r~~~~rL~~~gl~fdl~~~~~q--- 148 (279)
T COG3618 82 G---IVGVIDECRPE--FAAKLERAR-YPFFRGVRRNLHVV----PDGLFEAPAWRANVERLAKLGLHFDLQVDPHQ--- 148 (279)
T ss_pred C---EEEEEECCCCH--HHHHHHHHC-CCCCCEEEEHHHCC----CCCCHHHHHHHHHHHHHHHCCCEEEEEECHHH---
T ss_conf 6---59998357804--899999843-65421000022037----75210138999999999756970899857645---
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH-----------HHHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCC
Q ss_conf 3001467654578999996206953997057858-----------99999870573320230231003978861378883
Q gi|254781012|r 145 DIFDRELMFIDKILDPLRNKLPNLKIILEHITTS-----------NGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNP 213 (349)
Q Consensus 145 ~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~-----------~sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~ 213 (349)
+. .+.......+++++.|-|.-.. +.+--+.+..++.+.+.-=
T Consensus 149 ---------l~-~~i~l~~~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la~~pNv~~KlSG~---------------- 202 (279)
T COG3618 149 ---------LP-DLIPLALKAPDVNFVLDHCGRPDIKINLEDPWKAALARLARRPNVWAKLSGV---------------- 202 (279)
T ss_pred ---------HH-HHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEE----------------
T ss_conf ---------37-7887785389998885168888766566678999999998488769998640----------------
Q ss_pred CEEECCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 11321346999999999999976--9941897138886531332154577544543679999999972069999999998
Q gi|254781012|r 214 HYYCLPIPKREKHRLSLRKAALS--GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFV 291 (349)
Q Consensus 214 ~~k~nPPlR~~~dr~aL~~ai~~--G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 291 (349)
...+-+- .+.++.....+-+++ |.-..+.|||= ||..=. + +....+-+..++..+ +-..-.+.+
T Consensus 203 ~~~~~~~-w~~~~v~p~~e~~i~~fg~dR~vfGSdw-Pv~~l~---~-------~~~~~~~~~~~~v~~--~~~er~~i~ 268 (279)
T COG3618 203 YAYSDES-WTVEDVRPYVEELIELFGWDRFVFGSDW-PVTSLE---S-------DFASWVAATRELVPG--DAAERARIL 268 (279)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHHHCCCCCEEECCCC-CCCCCC---C-------CHHHHHHHHHHHCCC--CHHHHHHHH
T ss_conf 0136677-7788899999999986694426750799-712135---7-------769999999987389--888999997
Q ss_pred HHCCHHHCCC
Q ss_conf 2431788188
Q gi|254781012|r 292 SINGATWYGI 301 (349)
Q Consensus 292 s~npa~~~gl 301 (349)
+.||+|+|++
T Consensus 269 ~~NA~rly~~ 278 (279)
T COG3618 269 VDNARRLYRL 278 (279)
T ss_pred HHCHHHHHCC
T ss_conf 5589988477
No 124
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=88.00 E-value=1 Score=23.84 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=30.3
Q ss_pred HHCCCCHHHHHHHHHHCCHHHCCCCC--------CCCEEEEEECCCCE
Q ss_conf 72069999999998243178818898--------88528999479717
Q gi|254781012|r 278 FEEENKLENLESFVSINGATWYGIPV--------NTRKISLKRREQPI 317 (349)
Q Consensus 278 ~~~~~~L~~l~~~~s~npa~~~gl~~--------~~~~i~l~d~~~~~ 317 (349)
-....+++..+.+.|.||||.+||.. ..+|+++.|.+-..
T Consensus 321 ~~~~~~~~eAv~maS~~PA~~lgl~~~~G~i~~G~~Adlvvld~d~~v 368 (380)
T COG1820 321 EWGGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDDLNV 368 (380)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCE
T ss_conf 974899999998841347988098664564668861578998899728
No 125
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=84.67 E-value=2.9 Score=21.01 Aligned_cols=216 Identities=12% Similarity=0.052 Sum_probs=101.5
Q ss_pred HHCCCCEEEEEC--CC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHH------CCCEEE
Q ss_conf 741887399983--89--51489898999999999998386884699501345278999889987440------687210
Q gi|254781012|r 28 DTAKNFRRALVM--PN--IDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTETTDPDDVEKGFT------SQLVQA 97 (349)
Q Consensus 28 a~aGG~TtV~~M--PN--T~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~------~~~~~~ 97 (349)
+++-|+..+=.| |. +..-++-.+.+....+ ..+.......+....-.++.....++...+... ...+.+
T Consensus 82 ~~~~nV~Y~Elr~~P~~~~~~~l~~~~~~~a~~~-~~~~a~~~~~i~~~lI~~~~R~~~~e~a~~~~~~a~~~~~~~vvG 160 (325)
T cd01320 82 AAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLR-GLDEAEAEFGIKARLILCGLRHLSPESAQETLELALKYRDKGVVG 160 (325)
T ss_pred HHHCCCEEEEEEECHHHHHCCCCCHHHHHHHHHH-HHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9986974886673588874069867777999999-998765007936999875267799999999999999716787788
Q ss_pred HHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 22104551002565410068899999999873982220257555554300146765457899999620695399705785
Q gi|254781012|r 98 IKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITT 177 (349)
Q Consensus 98 ~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST 177 (349)
+.+... +. ........++|+.+++.|..+.+||-.... . ..+...+...-+.+-|.=+++ +..
T Consensus 161 idl~G~------E~-~~~~~~f~~~f~~a~~~gl~~t~HaGE~~~----~----~~v~~ai~~l~~~RIGHG~~~--~~d 223 (325)
T cd01320 161 FDLAGD------EV-GFPPEKFVRAFQRAREAGLRLTAHAGEAGG----P----ESVRDALDLLGAERIGHGIRA--IED 223 (325)
T ss_pred EECCCC------CC-CCCHHHHHHHHHHHHHCCCEEEEECCCCCC----H----HHHHHHHHCCCCCEECCCCCC--CCC
T ss_conf 425786------67-898689999999999859845664588898----2----889999860498643264113--469
Q ss_pred HHHHHHHHHCCCCCEEEECCC-CCC-CHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
Q ss_conf 899999870573320230231-003-978861378883113213469999999999999769941897138886531332
Q gi|254781012|r 178 SNGIDYVNNATNIAGSITVHH-LII-NRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSK 255 (349)
Q Consensus 178 ~~sv~lir~ak~vtaEVTPHH-L~l-t~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK 255 (349)
.+-++.+++ ++|..||||-= +.+ .-.++ . .-|+| .-+..|.. ..|+||--
T Consensus 224 ~~l~~~l~~-~~I~lEiCptSN~~~~~v~~~---------~-~HPi~---------~~~~~gv~-v~i~TDDp------- 275 (325)
T cd01320 224 PELVKRLAE-RNIPLEVCPTSNVQTGAVKSL---------A-EHPLR---------ELLDAGVK-VTINTDDP------- 275 (325)
T ss_pred HHHHHHHHH-CCCEEEECCCCCHHCCCCCCC---------C-CCHHH---------HHHHCCCE-EEEECCCC-------
T ss_conf 999999986-097278766532110578887---------7-87299---------99987992-99958994-------
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH
Q ss_conf 154577544543679999999972069999999998243178
Q gi|254781012|r 256 ESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGAT 297 (349)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~ 297 (349)
|+++....-.+...+-.-+.+.+.+.++ ..|.-+
T Consensus 276 -------~~f~t~l~~Ey~~~~~~~gls~~~l~~l-~~nai~ 309 (325)
T cd01320 276 -------TVFGTYLTDEYELLAEAFGLTEEELKKL-ARNAVE 309 (325)
T ss_pred -------CCCCCCHHHHHHHHHHHHCCCHHHHHHH-HHHHHH
T ss_conf -------0028988999999999859299999999-999999
No 126
>PRK09358 adenosine deaminase; Provisional
Probab=83.67 E-value=3.2 Score=20.75 Aligned_cols=220 Identities=11% Similarity=0.029 Sum_probs=95.5
Q ss_pred HHCCCCEEEEEC--CCC--CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCEEEHHHCCC
Q ss_conf 741887399983--895--1489898999999999998386884699501345278999889987440687210221045
Q gi|254781012|r 28 DTAKNFRRALVM--PNI--DPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFA 103 (349)
Q Consensus 28 a~aGG~TtV~~M--PNT--~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~ 103 (349)
+++-|+..+=.+ |.. ..-++-.+.++...+. .+.....+.+....-.++.....++...+..... .+....
T Consensus 86 ~~~dnv~Y~E~r~~P~~~~~~gl~~~~~~~~i~~~-~~~a~~~~~i~~~lI~~~~R~~~~e~a~~~~~~a----~~~~~~ 160 (333)
T PRK09358 86 AAADGVVYAEIRFDPQLHTERGLPLEEVVEAVLDG-LRDAEADFGISARLILCFLRHFGEEAALETLELA----LRFRDR 160 (333)
T ss_pred HHHCCCEEEEEEECHHHHHCCCCCHHHHHHHHHHH-HHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHH----HHCCCC
T ss_conf 99769659987636788750588667789999999-9987864696699999855679999999999999----853478
Q ss_pred CCEECCCCC---CCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 510025654---10068899999999873982220257555554300146765457899999620695399705785899
Q gi|254781012|r 104 GSTTNSHHG---IRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNG 180 (349)
Q Consensus 104 ~~~~~~~~~---v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~s 180 (349)
+..+.+-.| ........++|+.+++.|..+.+||-.... . +.+...+...-+.+-|.=+.+ +...+-
T Consensus 161 ~vvGidl~G~E~~~~~~~f~~~f~~ar~~gl~~t~HaGE~~~----~----~~i~~ai~~l~a~RIGHGv~~--~~d~~l 230 (333)
T PRK09358 161 GVVGFDLAGDELGFPPSKFARAFDIARDAGLRLTAHAGEAGG----P----ESIWEALDELGADRIGHGVRA--IEDPAL 230 (333)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC----H----HHHHHHHHHCCCCEECCCEEC--CCCHHH
T ss_conf 779843568767898687999999999859923330688898----4----999999984287642350311--679999
Q ss_pred HHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCC
Q ss_conf 99987057332023023100397886137888311321346999999999999976994189713888653133215457
Q gi|254781012|r 181 IDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCG 260 (349)
Q Consensus 181 v~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~ 260 (349)
++.+++ ++|..||||-==+.+ +.... +. .-|+ .+-+..|.. .+|+||--
T Consensus 231 ~~~l~~-~~I~lEiCptSN~~~------~~v~~-~~-~HPi---------~~~~~~gv~-v~inTDD~------------ 279 (333)
T PRK09358 231 MDRLAD-RRIPLEVCPTSNVQL------GVVPS-LA-EHPL---------KKLLDAGVR-VTINTDDP------------ 279 (333)
T ss_pred HHHHHH-CCCEEEECCCCHHHH------CCCCC-CC-CCHH---------HHHHHCCCE-EEECCCCC------------
T ss_conf 999986-696699766430320------15787-55-5769---------999988994-99808995------------
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCH
Q ss_conf 754454367999999997206999999999824317
Q gi|254781012|r 261 CAGIYTARNALNCLAQIFEEENKLENLESFVSINGA 296 (349)
Q Consensus 261 ~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa 296 (349)
|+++....-.+...+-.-..+.+++.++ ..|.-
T Consensus 280 --~vf~t~ls~Ey~~~~~~~~ls~~el~~l-~~nai 312 (333)
T PRK09358 280 --LVFGTTLSEEYELLAEAFGLTDEELAQL-ARNAL 312 (333)
T ss_pred --CCCCCCHHHHHHHHHHHHCCCHHHHHHH-HHHHH
T ss_conf --2028978999999999859299999999-99999
No 127
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=78.54 E-value=4.9 Score=19.64 Aligned_cols=171 Identities=16% Similarity=0.104 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHC---CCCEECCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHCCCEEE--EECCCHHHHHHHHHHC
Q ss_conf 068899999999873---982220257555554300146--765457899999620695399--7057858999998705
Q gi|254781012|r 115 NIDRVMPVLERMETI---GMPLCIHGEILNQDIDIFDRE--LMFIDKILDPLRNKLPNLKII--LEHITTSNGIDYVNNA 187 (349)
Q Consensus 115 ~~~~~~~~le~~~~~---~~~i~~H~E~~~~~~~~~~~E--~~~~~~~l~~~~a~~~~~~iH--i~HiST~~sv~lir~a 187 (349)
-.+.|..+++.++++ +..+.+ +|.-..+....... +...-...+..+|...+|.++ ....+.+.=-++-+.+
T Consensus 102 a~e~m~~~lelA~k~v~eg~avai-GEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~a 180 (285)
T COG1831 102 ALEEMRHALELAAKLVEEGKAVAI-GEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMA 180 (285)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEE-ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 999999999999999850332331-0258888989999999999999999998534798379753778867899999999
Q ss_pred CCCCE---EEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCC
Q ss_conf 73320---230231003978861378883113213469999999999999769941897138886531332154577544
Q gi|254781012|r 188 TNIAG---SITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGI 264 (349)
Q Consensus 188 k~vta---EVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~ 264 (349)
+.++. -|-=||---....+.. .| .+|.+- ..|..+.+++..|.- +++-||= ++++..|-+.-|.
T Consensus 181 k~~G~~~~~VVkHha~p~v~~~~~--~G----i~pSV~--asr~~v~~a~~~g~~-FmmETDy----IDDp~RpgavL~P 247 (285)
T COG1831 181 KEAGIKPYRVVKHHAPPLVLKCEE--VG----IFPSVP--ASRKNVEDAAELGPR-FMMETDY----IDDPRRPGAVLGP 247 (285)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHH--CC----CCCCCC--CCHHHHHHHHHCCCC-EEEECCC----CCCCCCCCCCCCC
T ss_conf 981899641576147832002332--27----677665--656889999853875-5754024----5786668874796
Q ss_pred CCHHHHHHHHHHHHHCC-CCHHHHHHHHHHCCHHHCCCC
Q ss_conf 54367999999997206-999999999824317881889
Q gi|254781012|r 265 YTARNALNCLAQIFEEE-NKLENLESFVSINGATWYGIP 302 (349)
Q Consensus 265 ~~~~~~~~~~~~~~~~~-~~L~~l~~~~s~npa~~~gl~ 302 (349)
.+.+-- ...+.++. .+=+.+-+..-.||.++||+.
T Consensus 248 ktVPrr---~~~i~~~g~~~ee~vy~i~~E~pe~VYg~~ 283 (285)
T COG1831 248 KTVPRR---TREILEKGDLTEEDVYRIHVENPERVYGIE 283 (285)
T ss_pred CCHHHH---HHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 204499---999998558838899999876779873856
No 128
>PRK06361 hypothetical protein; Provisional
Probab=78.30 E-value=5 Score=19.60 Aligned_cols=64 Identities=20% Similarity=0.123 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECC-CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCC
Q ss_conf 9999999999999769941897138-886531332154577544543679999999972069999999998243178818
Q gi|254781012|r 222 KREKHRLSLRKAALSGNPRFFLGTD-SAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYG 300 (349)
Q Consensus 222 R~~~dr~aL~~ai~~G~i~d~I~TD-HAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~g 300 (349)
|...+...+..|..-|.. ..|+|| |+|... ....++ +........+=+++++-+|++|.++++
T Consensus 151 rld~~~~~~r~A~~~Gv~-i~I~sDAH~~~~l------------~~~~~g---v~~Arra~L~~~dv~ntls~~~~~~~~ 214 (216)
T PRK06361 151 HNLTNGHVARLAREAGAP-LVINTDTHAPSDL------------ITYETA---RKVALGAGLTEAELKEALSNNPKLLLK 214 (216)
T ss_pred CCCCCHHHHHHHHHCCCE-EEEECCCCCCCCC------------CCHHHH---HHHHHHCCCCHHHHHHHHHHCHHHHHH
T ss_conf 647779999999986996-9997899980003------------688999---999998499999999998769999973
Q ss_pred C
Q ss_conf 8
Q gi|254781012|r 301 I 301 (349)
Q Consensus 301 l 301 (349)
+
T Consensus 215 ~ 215 (216)
T PRK06361 215 L 215 (216)
T ss_pred H
T ss_conf 0
No 129
>TIGR01430 aden_deam adenosine deaminase; InterPro: IPR006330 This family includes the experimentally verified adenosine deaminases of mammals and Escherichia coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. ; GO: 0004000 adenosine deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process.
Probab=78.15 E-value=5 Score=19.57 Aligned_cols=158 Identities=9% Similarity=0.107 Sum_probs=77.1
Q ss_pred HHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHC-----C--CEEEHHHCCCCCEECCCCCCCH--HHHHHHHHHHH
Q ss_conf 9999983868846995013452789998899874406-----8--7210221045510025654100--68899999999
Q gi|254781012|r 56 RQRILNALPPEYDFSPLMTIYLTETTDPDDVEKGFTS-----Q--LVQAIKLYFAGSTTNSHHGIRN--IDRVMPVLERM 126 (349)
Q Consensus 56 ~~r~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~-----~--~~~~~k~~~~~~~~~~~~~v~~--~~~~~~~le~~ 126 (349)
..+....+..+.++....-.++......+...+.... + .+.++.+. ++.-... .....++|+.+
T Consensus 124 ~~~g~~~a~~dfGi~~~~I~c~~R~~~~~~~~~~~~~a~~~~~~~~ivg~gLa-------gdE~~~ps~~~~F~~~f~~A 196 (346)
T TIGR01430 124 VLDGLDEAERDFGIKSRLILCGLRHVQPEAAEETLELALPFYKEQGIVGFGLA-------GDERGGPSSPEKFVRAFAIA 196 (346)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECC-------CCCCCCCCCHHHHHHHHHHH
T ss_conf 99999976775164541344421356878999999999886347856898526-------54668898877899999998
Q ss_pred H--HCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH-HHHCCCCCEEEECCCCCCCH
Q ss_conf 8--73982220257555554300146765457899999620695399705785899999-87057332023023100397
Q gi|254781012|r 127 E--TIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDY-VNNATNIAGSITVHHLIINR 203 (349)
Q Consensus 127 ~--~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~l-ir~ak~vtaEVTPHHL~lt~ 203 (349)
. +.|..+.+||...+... ...+..+++.+-+.+-|-=++ -+-+.+=++. +++ ++|++||||-=
T Consensus 197 rsl~~Gl~~T~HAGlhE~~g------~~~v~~Ald~l~~~RIgHG~~--~~eDp~L~~rlL~~-~~i~le~CP~S----- 262 (346)
T TIGR01430 197 RSLELGLKLTVHAGLHELGG------PESVREALDDLGATRIGHGVR--ALEDPELLKRLLAE-EQITLEVCPLS----- 262 (346)
T ss_pred HHHHCCCCEEEECCCCCCCC------HHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHHHH-CCCEEEECCHH-----
T ss_conf 76516983563037534577------467999998538851002400--01487899999986-79558875211-----
Q ss_pred HHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 88613788831132134699999999999997699418971388
Q gi|254781012|r 204 NAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDS 247 (349)
Q Consensus 204 ~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDH 247 (349)
.+.-+.+.+ + ..-.|.+-+-.|- ...|.||=
T Consensus 263 -N~~l~~v~~-------~----~~~Pl~~f~~~G~-~~~lNsDD 293 (346)
T TIGR01430 263 -NLALGVVKS-------L----AEHPLKRFLEAGV-KVTLNSDD 293 (346)
T ss_pred -HHHCCCCCC-------C----CCHHHHHHHHCCC-CEEECCCC
T ss_conf -111013588-------6----5237899886568-57744877
No 130
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=76.90 E-value=5.5 Score=19.35 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=6.1
Q ss_pred CCCEEEEECCCC
Q ss_conf 887399983895
Q gi|254781012|r 31 KNFRRALVMPNI 42 (349)
Q Consensus 31 GG~TtV~~MPNT 42 (349)
.|+..++.+=+|
T Consensus 34 ~Gv~gi~v~Gst 45 (288)
T cd00954 34 QGVDGLYVNGST 45 (288)
T ss_pred CCCCEEEECCCC
T ss_conf 799899979354
No 131
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=74.89 E-value=6.2 Score=19.02 Aligned_cols=15 Identities=0% Similarity=-0.137 Sum_probs=7.7
Q ss_pred HHCCCCEEEEECCCC
Q ss_conf 741887399983895
Q gi|254781012|r 28 DTAKNFRRALVMPNI 42 (349)
Q Consensus 28 a~aGG~TtV~~MPNT 42 (349)
-+..|+..++.+=.|
T Consensus 35 l~~~Gv~gi~v~Gst 49 (296)
T TIGR03249 35 LLGYGLEALFAAGGT 49 (296)
T ss_pred HHHCCCCEEEECCCC
T ss_conf 997799989978305
No 132
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=72.80 E-value=6.9 Score=18.71 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=6.6
Q ss_pred HCCCCEEEEECCCC
Q ss_conf 41887399983895
Q gi|254781012|r 29 TAKNFRRALVMPNI 42 (349)
Q Consensus 29 ~aGG~TtV~~MPNT 42 (349)
+..|+..++.+=+|
T Consensus 39 i~~Gv~gl~~~Gtt 52 (309)
T cd00952 39 IAAGVDGILTMGTF 52 (309)
T ss_pred HHCCCCEEEECCCC
T ss_conf 97699989979235
No 133
>PRK10689 transcription-repair coupling factor; Provisional
Probab=72.21 E-value=7.2 Score=18.62 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=24.5
Q ss_pred CCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 3100397886137888311321346999999999999976994189713
Q gi|254781012|r 197 HHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGT 245 (349)
Q Consensus 197 HHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~T 245 (349)
||-.|.+ -+.+ +.-...+--=.|+..++...++++++|+|+-+|||
T Consensus 665 H~~tF~~-Rf~~--~pv~i~~LsRf~s~ke~~~i~~~l~~G~idIvIGT 710 (1148)
T PRK10689 665 HYDNFRD-RFAN--WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710 (1148)
T ss_pred HHHHHHH-HHHC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEHH
T ss_conf 9999998-7641--57337750388889999999999866998776204
No 134
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=71.86 E-value=7.3 Score=18.57 Aligned_cols=12 Identities=8% Similarity=-0.025 Sum_probs=5.6
Q ss_pred CCCEEEEECCCC
Q ss_conf 887399983895
Q gi|254781012|r 31 KNFRRALVMPNI 42 (349)
Q Consensus 31 GG~TtV~~MPNT 42 (349)
.|++.++..=.|
T Consensus 37 ~Gv~Gi~~~Gst 48 (294)
T PRK04147 37 QGIDGLYVGGST 48 (294)
T ss_pred CCCCEEEECCCC
T ss_conf 799899979513
No 135
>TIGR01178 ade adenine deaminase; InterPro: IPR006679 Adenine deaminase (3.5.4.2 from EC) hydrolyses adenine to form hypoxanthine and ammonia. The enzyme is part of a large metal dependent hydrolase superfamily . The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source .; GO: 0000034 adenine deaminase activity, 0006146 adenine catabolic process.
Probab=70.66 E-value=7.8 Score=18.41 Aligned_cols=56 Identities=11% Similarity=-0.006 Sum_probs=38.4
Q ss_pred CEEEECCCCEEEEECCCHHH--HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 65586466423750881788--987498741887399983895148989899999999
Q gi|254781012|r 2 KKISLRVPDDWHLHLRDGEI--LKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQ 57 (349)
Q Consensus 2 ~~l~lp~~~D~HvH~Reg~~--~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~ 57 (349)
....+|+.+|.|+|+...-. ..........|.++++.-|.-...+...+.+....+
T Consensus 56 ~~~~~pg~~d~~~~~~~~~~~p~~~~~~~~~~g~~~~~~dp~~~~~~~g~~g~~~~~~ 113 (575)
T TIGR01178 56 GEYLVPGFIDGHLHIESSLLTPSEFAKLVLPHGTTTVVADPHEIANVLGEDGILFLLE 113 (575)
T ss_pred CCEECCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHCCHHHHHHHHH
T ss_conf 6410342001100000000003333344322563024206045543100124677764
No 136
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=63.59 E-value=8.1 Score=18.30 Aligned_cols=61 Identities=15% Similarity=0.127 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHCCC------------CCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCC
Q ss_conf 231003978861378------------883113213469999999999999769941897138886531332154
Q gi|254781012|r 196 VHHLIINRNAIFHDG------------LNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESS 258 (349)
Q Consensus 196 PHHL~lt~~d~~~~~------------~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~ 258 (349)
|||=+=.+-|+.+.+ ..|..-+-=-|-+++|-+||++|+-.|. -+|+|=||--..+=|+.|
T Consensus 178 PQ~~vG~RtDVLD~CPKAEGmMM~iRSMSP~Viv~DEIGr~ED~~Al~eA~naGV--~~I~TaHg~~~~Dl~kRP 250 (282)
T TIGR02858 178 PQLDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALNAGV--SVIATAHGRDLEDLKKRP 250 (282)
T ss_pred CCCCCCCCEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHCCH
T ss_conf 4144676067517885378999999706985799814889533899999861675--688764048812665076
No 137
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=61.50 E-value=12 Score=17.30 Aligned_cols=231 Identities=15% Similarity=0.152 Sum_probs=107.2
Q ss_pred CCCEEEEECCC-------------------HHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 66423750881-------------------78898749874188739998389514898989999999999983868846
Q gi|254781012|r 8 VPDDWHLHLRD-------------------GEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYD 68 (349)
Q Consensus 8 ~~~D~HvH~Re-------------------g~~~~~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~ 68 (349)
|+||.|+|+=+ +|.... ....|=--+|++.|... ..||...+.. ++.....
T Consensus 1 GaiD~H~Hv~dp~~~~~~~~~~~~p~~~~~~dl~~~--~~~~Gi~r~VlVQ~s~~-g~Dn~~ll~a-----l~~~~~~-- 70 (263)
T cd01311 1 GAVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRAL--RSTLGIDRVVIVQASIY-GADNSNLLDA-----LASNGKA-- 70 (263)
T ss_pred CCEECCEEEECCCCCCCCCCCCCCCCCCCHHHHHHH--HHHHCCCEEEEECCCCC-CCCHHHHHHH-----HHHCCCC--
T ss_conf 978551245689988888867789999899999999--99809965999788877-4538999999-----9856994--
Q ss_pred EEEEEEEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHH
Q ss_conf 99501345278999889987440687210221045510025654100688999999998739822202575555543001
Q gi|254781012|r 69 FSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFD 148 (349)
Q Consensus 69 ~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~ 148 (349)
..+.. ..-......++...... .+.++.+... ..+..+...+.+.++.++.+|..+.+|.....
T Consensus 71 -~~~v~-v~~~~~~d~~l~~l~~~-GvrGvR~n~~------~~~~~~~~~~~~~~~ri~~~gw~~~l~~~~~~------- 134 (263)
T cd01311 71 -RGGAT-VDPRTTTDAELKEMHDA-GVRGVRFNFL------FGGVDNKDELDEIAKRAAELGWHVQVYFDAVD------- 134 (263)
T ss_pred -EEEEE-EECCCCCHHHHHHHHHC-CCCCEEEECC------CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC-------
T ss_conf -79999-80798997999998765-8971377256------77778989999999999874986452037110-------
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCHHH------------HHHHHHHCCCCCEEEECCCCCCCHHHHHCCCCCCCEE
Q ss_conf 4676545789999962069539970578589------------9999870573320230231003978861378883113
Q gi|254781012|r 149 RELMFIDKILDPLRNKLPNLKIILEHITTSN------------GIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHYY 216 (349)
Q Consensus 149 ~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~------------sv~lir~ak~vtaEVTPHHL~lt~~d~~~~~~~~~~k 216 (349)
+...++ .+.+ ...++.|-|+.-.. -+++++. .++.+.++--|-. +.. +
T Consensus 135 -----l~~~~~-~l~~-~p~~vViDH~g~p~~~~g~~~~~~~~l~~L~~~-~~v~vKlSg~~r~-s~~-------~---- 194 (263)
T cd01311 135 -----LPALLP-FLQK-LPVAVVIDHFGRPDVTKGVDGAEFAALLKLIEE-GNVWVKVSGPYRL-SVK-------Q---- 194 (263)
T ss_pred -----HHHHHH-HHHH-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHC-CCEEEEECCCEEE-CCC-------C----
T ss_conf -----699999-9997-899899856778898878779889999999966-9869996454551-588-------9----
Q ss_pred ECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 21346999999999999976-99418971388865313321545775445436799999999720699999999982431
Q gi|254781012|r 217 CLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSING 295 (349)
Q Consensus 217 ~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~l~~~~s~np 295 (349)
|+ .+|...+.+.+.+ |--..+.|||= ||+..+...+ .......+.++..-+ ..-+--.+.|..||
T Consensus 195 --~~---~~d~~p~~~~l~~~gp~RlmWGSDW-Ph~~~~~~~~-----~pd~~~ll~~~~~w~---~d~~~~~~ilv~NP 260 (263)
T cd01311 195 --EA---YADVIAFARQIVAAAPDRLVWGTDW-PHPRLREPDP-----MPDDGALLRLIPSWA---PDAQLQRKNLVDNP 260 (263)
T ss_pred --CC---HHHHHHHHHHHHHHCCCCEEEECCC-CCCCCCCCCC-----CCCHHHHHHHHHHHC---CCHHHHHHHHHHCH
T ss_conf --88---6689999999998699948997999-9999876789-----999899999999886---99999999985394
Q ss_pred HHH
Q ss_conf 788
Q gi|254781012|r 296 ATW 298 (349)
Q Consensus 296 a~~ 298 (349)
+|+
T Consensus 261 ~rL 263 (263)
T cd01311 261 ARL 263 (263)
T ss_pred HHC
T ss_conf 219
No 138
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=60.70 E-value=12 Score=17.21 Aligned_cols=111 Identities=16% Similarity=0.080 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHC---CCCEEEEECCCCCCCCCCHHHHHH---------HHHHHHHHCCCCCEEEEEEE-EEECCCCCHHH
Q ss_conf 788987498741---887399983895148989899999---------99999983868846995013-45278999889
Q gi|254781012|r 19 GEILKTVLRDTA---KNFRRALVMPNIDPPIITVDDACA---------YRQRILNALPPEYDFSPLMT-IYLTETTDPDD 85 (349)
Q Consensus 19 g~~~~~t~aa~a---GG~TtV~~MPNT~Ppi~t~e~~~~---------~~~r~~~~~~~~~~~~~~~~-~~lt~~~~~~~ 85 (349)
|.-+|||+|..| =|+-||++=||=--.-|+.+.+.. +-++|+++-+.+. ..++ |+.|.=|-.-+
T Consensus 24 EFDYSGsQAcKALkEEGy~viLVNsNpATimTD~~~AD~vY~ePlT~e~V~~IIEKERPDg---iL~t~GGQTALNlav~ 100 (1089)
T TIGR01369 24 EFDYSGSQACKALKEEGYEVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDG---ILPTLGGQTALNLAVE 100 (1089)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCC---HHCCCCCHHHHHHHHH
T ss_conf 3024789999998764957999758847233886686600252545888866653168660---0025760357777886
Q ss_pred HHHHHHCCCEEEHHHCCCCCEECCCCCC---CHH--------------------HHHHHHHHHHHHCCCCEECCCC
Q ss_conf 9874406872102210455100256541---006--------------------8899999999873982220257
Q gi|254781012|r 86 VEKGFTSQLVQAIKLYFAGSTTNSHHGI---RNI--------------------DRVMPVLERMETIGMPLCIHGE 138 (349)
Q Consensus 86 ~~~~~~~~~~~~~k~~~~~~~~~~~~~v---~~~--------------------~~~~~~le~~~~~~~~i~~H~E 138 (349)
+.+... ++-|.--..+..-..+ .|- ..+.+|++.+.+.|.|++|-+=
T Consensus 101 L~~~GV------L~kYgV~vLGT~~eaI~kaEDRe~F~~~M~ei~~pvp~S~~~~~~eEA~~~a~~~GyPviVRpA 170 (1089)
T TIGR01369 101 LEESGV------LEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPKSEIVHSVEEALKAAKEIGYPVIVRPA 170 (1089)
T ss_pred HHHCCC------CHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCC
T ss_conf 620685------1452917852342435202027999999997389988110027889999999626896898100
No 139
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=60.69 E-value=8.7 Score=18.10 Aligned_cols=85 Identities=8% Similarity=0.010 Sum_probs=52.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--------EEEEECCCHHH
Q ss_conf 2565410068899999999873982220257555554300146765457899999620695--------39970578589
Q gi|254781012|r 108 NSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNL--------KIILEHITTSN 179 (349)
Q Consensus 108 ~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~--------~iHi~HiST~~ 179 (349)
+.++|-.+....+++|..++-...|+++.||+..........+..... .+. ..+.-+|. .+.-++-.+++
T Consensus 165 ffGDGat~eG~fhEalN~A~~~~LPviFv~eNN~yaist~~~~~~~~~-~i~-~ra~~yGi~~~~vDGnD~~av~~~~~~ 242 (343)
T CHL00149 165 FFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSEP-EIH-KKAEAFGLPGIEVDGMDVLAVREVAKE 242 (343)
T ss_pred EECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHCCCCC-HHH-HHHHHCCCCEECCCCCCHHHHHHHHHH
T ss_conf 835763320389999999998479768999878814657732305763-377-888656997201798789999999999
Q ss_pred HHHHHHHCC-CCCEEE
Q ss_conf 999987057-332023
Q gi|254781012|r 180 GIDYVNNAT-NIAGSI 194 (349)
Q Consensus 180 sv~lir~ak-~vtaEV 194 (349)
+++.+|+++ ++-.|+
T Consensus 243 Ai~~aR~g~gP~lie~ 258 (343)
T CHL00149 243 AVERARSGQGPTLIEA 258 (343)
T ss_pred HHHHHCCCCCCEEEEE
T ss_conf 9998456999889999
No 140
>pfam00962 A_deaminase Adenosine/AMP deaminase.
Probab=60.48 E-value=12 Score=17.19 Aligned_cols=143 Identities=15% Similarity=0.050 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEE
Q ss_conf 06889999999987398222025755555430014676545789999962069539970578589999987057332023
Q gi|254781012|r 115 NIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSI 194 (349)
Q Consensus 115 ~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEV 194 (349)
.......+|+.+++.|..+.+||-... ... .+...+...-+.+-|.=+++ +...+-++++++ ++|..||
T Consensus 176 ~~~~f~~~f~~a~~~gl~~T~HaGE~~----~~~----~v~~ai~~l~a~RIGHG~~~--~~d~~l~~~~~~-~~I~lEv 244 (329)
T pfam00962 176 PLPDFLYAFAEAGKYGLHLTPHAGEAG----GPQ----SVVDALLDLGAERIGHGIRL--AKDPVLLYLLAE-RQIPIEV 244 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC----CHH----HHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHC-CCCEEEE
T ss_conf 979999999999980981267347889----889----99999985174410464033--469999999841-5953898
Q ss_pred ECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 02310039788613788831132134699999999999997699418971388865313321545775445436799999
Q gi|254781012|r 195 TVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCL 274 (349)
Q Consensus 195 TPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~~~~~~~~~ 274 (349)
||== .+.. +.-|.++ ++ -+.+-+..|.. ..|.||-- ++++....-.+.
T Consensus 245 CptS------Nv~~-------~~v~~~~--~H--P~~~l~~~gv~-vtinTDDp--------------~~f~ttL~~Ey~ 292 (329)
T pfam00962 245 CPLS------NVAL-------GAVLSYA--KH--PLKEFLDAGVP-VSLSTDDP--------------LQFGATLSEEYT 292 (329)
T ss_pred CCCC------HHHH-------CCCCCCC--HH--HHHHHHHCCCE-EEEECCCC--------------CCCCCCHHHHHH
T ss_conf 8663------6652-------5667632--57--99999987982-99978996--------------101888899999
Q ss_pred HHHHHCCCCHHHHHHHHHHCCHHHCCC
Q ss_conf 999720699999999982431788188
Q gi|254781012|r 275 AQIFEEENKLENLESFVSINGATWYGI 301 (349)
Q Consensus 275 ~~~~~~~~~L~~l~~~~s~npa~~~gl 301 (349)
...-.-+.+.+++.+ ++.|..+.--+
T Consensus 293 ~~~~~~gls~~~l~~-l~~nai~~sF~ 318 (329)
T pfam00962 293 IAAQDFGLDTEDLCE-LARNSVKSSGL 318 (329)
T ss_pred HHHHHHCCCHHHHHH-HHHHHHHHHCC
T ss_conf 999985929999999-99999998689
No 141
>COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion]
Probab=60.21 E-value=11 Score=17.42 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHCCHHHCCCCCC--------CCEEEEEECCCCEEECHH-------HCCCCCCEEECC
Q ss_conf 0699999999982431788188988--------852899947971784711-------226777714657
Q gi|254781012|r 280 EENKLENLESFVSINGATWYGIPVN--------TRKISLKRREQPIIFDEK-------ITTSTGSITIFN 334 (349)
Q Consensus 280 ~~~~L~~l~~~~s~npa~~~gl~~~--------~~~i~l~d~~~~~~v~~~-------~~~sk~~~tpF~ 334 (349)
+..+|..+..++-.||||.+||+.. .+||.+.|.+- -.||.+ .-+++...|.=+
T Consensus 436 rE~t~~eia~~TRa~~ak~lgl~e~kGhLg~GadadIaiYdlnP-~~vDps~dye~v~kaf~~A~ytlK~ 504 (575)
T COG1229 436 RELTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNP-EQVDPSNDYEKVEKAFRKAAYTLKG 504 (575)
T ss_pred CCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCEEEEECCH-HHCCCCCCHHHHHHHHHHEEEEECC
T ss_conf 20029999988713714421663125756667666468985585-3368754399999987432489438
No 142
>pfam11243 DUF3045 Protein of unknown function (DUF3045). Members in this family of proteins are annotated as gene protein 30.1. Currently no function is known.
Probab=57.60 E-value=2.5 Score=21.43 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=29.9
Q ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 788831132134699999999999997699418971388
Q gi|254781012|r 209 DGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDS 247 (349)
Q Consensus 209 ~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDH 247 (349)
+..+.+++|||..|...|-+-..+.+..|.| . | |.|
T Consensus 19 Ghvn~FfR~nP~fr~~KD~~IFk~CVeqGFi-Y-v-se~ 54 (90)
T pfam11243 19 GHVNMFFRCNPEFRAQKDAEIFKECVEQGFI-Y-I-SEH 54 (90)
T ss_pred HHHHHHHHCCHHHHHHCHHHHHHHHHHCCEE-E-E-EHH
T ss_conf 1167775148898862318999999970538-8-6-576
No 143
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=57.02 E-value=7.8 Score=18.39 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=19.5
Q ss_pred CCCEEECCCCCCH-HHHHHHHHHHHCC
Q ss_conf 8311321346999-9999999999769
Q gi|254781012|r 212 NPHYYCLPIPKRE-KHRLSLRKAALSG 237 (349)
Q Consensus 212 ~~~~k~nPPlR~~-~dr~aL~~ai~~G 237 (349)
+.+.+|===++.+ +||..|..-+.+.
T Consensus 366 ~A~IFVGv~~~~~l~e~~~l~~~L~~~ 392 (508)
T TIGR01124 366 DAHIFVGVQLANPLQERQELLARLNEA 392 (508)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 755898652486156899999999728
No 144
>TIGR00195 exoDNase_III exodeoxyribonuclease III; InterPro: IPR000097 DNA damaging agents such as the antitumor drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity. This family contains members of AP endonuclease family 1. Except for Rrp1 and arp, these enzymes are proteins of about 300 amino-acid residues. Rrp1 and arp both contain additional and unrelated sequences in their N-terminal section (about 400 residues for Rrp1 and 270 for arp). The proteins contain glutamate which has been shown , in the Escherichia coli enzyme to bind a divalent metal ion such as magnesium or manganese.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0006281 DNA repair, 0005622 intracellular.
Probab=55.66 E-value=4.3 Score=19.97 Aligned_cols=54 Identities=9% Similarity=-0.080 Sum_probs=29.9
Q ss_pred CCCEEEECCCCCCCHHHH------HCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC----CCCCCC
Q ss_conf 332023023100397886------137888311321346999999999999976994189713----888653
Q gi|254781012|r 189 NIAGSITVHHLIINRNAI------FHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGT----DSAPHW 251 (349)
Q Consensus 189 ~vtaEVTPHHL~lt~~d~------~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~T----DHAPH~ 251 (349)
.++-+.+=+|=+++.-.= .+-+.+ ++.|||||+.+ =+++++ + .|+.|+ ||||=-
T Consensus 215 ~~~p~~~~~YtWwdYR~~Ga~drN~GWRID-~~l~s~~L~~~-~~~~~I----~---~d~rg~EKPSDH~Pv~ 278 (281)
T TIGR00195 215 KFNPDKEGAYTWWDYRTRGARDRNRGWRID-YFLVSEPLKER-CVDCLI----D---KDVRGSEKPSDHCPVV 278 (281)
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCCHHHHH-HHHHCHHHHHH-HHHHHH----C---CCCCCCCCCCCCCCEE
T ss_conf 005688894003311336850246224335-53308489888-987641----2---1300168888756526
No 145
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=54.35 E-value=15 Score=16.55 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHC----CCCCE--EEEC----CCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 57858999998705----73320--2302----31003978861378883113213469999999999999769941897
Q gi|254781012|r 174 HITTSNGIDYVNNA----TNIAG--SITV----HHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFL 243 (349)
Q Consensus 174 HiST~~sv~lir~a----k~vta--EVTP----HHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I 243 (349)
-|.=..+..+|..+ |+|-. -+|- |+-.|.+ -..+ +.=...+--=.++.+....+++.|++|.||-+|
T Consensus 544 EVAmRAaFkAv~~gneylKQVavLVPTT~LA~QHf~tf~~-RF~~--fPv~I~~LSRF~~~~E~~~iL~~la~G~iDI~I 620 (997)
T TIGR00580 544 EVAMRAAFKAVLDGNEYLKQVAVLVPTTILAQQHFETFKE-RFAN--FPVTIELLSRFRSAKEKKEILKELASGKIDILI 620 (997)
T ss_pred HHHHHHHHHHHCCCCCEECEEEEECCHHHHHHHHHHHHHH-HHCC--CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 8888788876338782201168962704427778899999-7378--981687527756737899999997559422663
Q ss_pred ECCC
Q ss_conf 1388
Q gi|254781012|r 244 GTDS 247 (349)
Q Consensus 244 ~TDH 247 (349)
||-=
T Consensus 621 GTH~ 624 (997)
T TIGR00580 621 GTHK 624 (997)
T ss_pred CCHH
T ss_conf 0104
No 146
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=53.62 E-value=8.8 Score=18.08 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=6.9
Q ss_pred EEEEECCCHHHHHH
Q ss_conf 39970578589999
Q gi|254781012|r 169 KIILEHITTSNGID 182 (349)
Q Consensus 169 ~iHi~HiST~~sv~ 182 (349)
|+.++-.+....++
T Consensus 115 rlILQPn~~~~~LR 128 (226)
T COG2384 115 RLILQPNIHTYELR 128 (226)
T ss_pred EEEECCCCCHHHHH
T ss_conf 07878887889999
No 147
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=53.04 E-value=16 Score=16.42 Aligned_cols=51 Identities=6% Similarity=-0.126 Sum_probs=23.2
Q ss_pred HHHHHHHHCCCCEEEEECCCC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 987498741887399983895-148989899999999999838688469950
Q gi|254781012|r 22 LKTVLRDTAKNFRRALVMPNI-DPPIITVDDACAYRQRILNALPPEYDFSPL 72 (349)
Q Consensus 22 ~~~t~aa~aGG~TtV~~MPNT-~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~ 72 (349)
..-..-.+..|+..++.+-.| --+.-|.+.-....+...+.......+..+
T Consensus 25 ~~~v~~li~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~v~~~~grvpvi~g 76 (296)
T PRK03620 25 REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVEACAGRVPVIAG 76 (296)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9999999977999899684231343489999999999999983897359825
No 148
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=52.43 E-value=17 Score=16.36 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEECCC-HHHHHHHHHHCCCCCEEEE
Q ss_conf 89999999987398222025755555430014676545789999962069-539970578-5899999870573320230
Q gi|254781012|r 118 RVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPN-LKIILEHIT-TSNGIDYVNNATNIAGSIT 195 (349)
Q Consensus 118 ~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~-~~iHi~HiS-T~~sv~lir~ak~vtaEVT 195 (349)
.++.+-++..+.+.|+++|-+--. ..-.+++++..+-.. .++-|+|+- ...-+...+..+..++
T Consensus 153 ~lrAaA~A~~~Tg~Pi~tHt~~gt-----------~g~eq~~il~~egvdl~~v~igH~d~n~dd~~y~~~l~~~Ga--- 218 (316)
T COG1735 153 SLRAAARAHKETGAPISTHTPAGT-----------MGLEQLRILAEEGVDLRKVSIGHMDPNTDDVYYQKKLADRGA--- 218 (316)
T ss_pred HHHHHHHHHHHCCCCEEEECCCHH-----------HHHHHHHHHHHCCCCHHHEEEECCCCCCCHHHHHHHHHHCCC---
T ss_conf 999999986411897177344003-----------019999999972998667367325899973999999984585---
Q ss_pred CCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHH-HHHHHHCCCCEEEEECCCCCCCHHH---HHCCCCCCCCCCHHHHH
Q ss_conf 2310039788613788831132134699999999-9999976994189713888653133---21545775445436799
Q gi|254781012|r 196 VHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLS-LRKAALSGNPRFFLGTDSAPHWDSS---KESSCGCAGIYTARNAL 271 (349)
Q Consensus 196 PHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~a-L~~ai~~G~i~d~I~TDHAPH~~ee---K~~~~~~~g~~~~~~~~ 271 (349)
+|-|+.- |-.. ..+.++|.+ +.+-+.+|.-+-+.-|+-.-+.... |..+. ..|.++..+.+
T Consensus 219 --~l~fD~i-------G~d~-----y~pd~~r~~~~~~l~~~gy~d~i~ls~d~~~~~~~~~~~~~~~-~~~~~g~~~I~ 283 (316)
T COG1735 219 --FLEFDRI-------GKDK-----YYPDEDRIAPLLELVARGYADLILLSHDDICLSDDVFLKSMLK-ANGGWGYGYIL 283 (316)
T ss_pred --EEEECCC-------CCCC-----CCCHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH-HCCCCCCCHHH
T ss_conf --6873245-------7423-----2757776515999998667665000333233310477876654-05886614206
Q ss_pred HH-HHHHHHCCCCHHHHHHHHHHCCHHHCCC
Q ss_conf 99-9999720699999999982431788188
Q gi|254781012|r 272 NC-LAQIFEEENKLENLESFVSINGATWYGI 301 (349)
Q Consensus 272 ~~-~~~~~~~~~~L~~l~~~~s~npa~~~gl 301 (349)
-- +..+..++.+-+.+-.++-.||+|+|.-
T Consensus 284 ~~fIP~Lk~~Gvde~~i~~mlvdNP~r~f~~ 314 (316)
T COG1735 284 NDFIPRLKRHGVDEETIDTMLVDNPARLFTA 314 (316)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCHHHHHCC
T ss_conf 7567999874998999999986198988355
No 149
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=51.36 E-value=17 Score=16.26 Aligned_cols=16 Identities=0% Similarity=-0.259 Sum_probs=8.8
Q ss_pred HHHCCCCEEEEECCCC
Q ss_conf 8741887399983895
Q gi|254781012|r 27 RDTAKNFRRALVMPNI 42 (349)
Q Consensus 27 aa~aGG~TtV~~MPNT 42 (349)
--+..|+..++.+=.|
T Consensus 29 ~l~~~Gv~gi~v~Gst 44 (289)
T cd00951 29 WLLSYGAAALFAAGGT 44 (289)
T ss_pred HHHHCCCCEEEECCHH
T ss_conf 9997799999979330
No 150
>pfam03786 UxuA D-mannonate dehydratase (UxuA). UxuA (this family) and UxuB are required for hexuronate degradation.
Probab=50.10 E-value=18 Score=16.14 Aligned_cols=130 Identities=11% Similarity=0.056 Sum_probs=65.8
Q ss_pred HHHHHHHHHCCCCEECCCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHCCCEEEEECCCHH---HHHHHHHHCCCCCEE
Q ss_conf 9999999873982220257555554300146---7654578999996206953997057858---999998705733202
Q gi|254781012|r 120 MPVLERMETIGMPLCIHGEILNQDIDIFDRE---LMFIDKILDPLRNKLPNLKIILEHITTS---NGIDYVNNATNIAGS 193 (349)
Q Consensus 120 ~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E---~~~~~~~l~~~~a~~~~~~iHi~HiST~---~sv~lir~ak~vtaE 193 (349)
.+++-.+.+.|..+++|+-||........|- .+...+.+++.-...-|..++.-.++.. .-+++||+....
T Consensus 189 ~~ViPvAEe~gVkLaiHPDDPP~~l~GlPRI~s~~ed~~~ll~~v~Sp~NGitfC~GSlg~~~~nDl~~~ir~f~~R--- 265 (350)
T pfam03786 189 DEIIPVAEEVGVKMAIHPDDPPWPIFGLPRIVTNIEDYQRLLELVDSPYNGITLCTGSYGARPDNDLPEMIREFADR--- 265 (350)
T ss_pred HHHHHHHHHHCCEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCC---
T ss_conf 99988999809878757999985557876331899999999984799412678711456678889999999998431---
Q ss_pred EECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf 302310039788613788831132134699999999999997699418971388865313321
Q gi|254781012|r 194 ITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKE 256 (349)
Q Consensus 194 VTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~ 256 (349)
.|..-|= ++....-...+.=...+-..-|--++++++.+-..+-.+=.||.|.-..|+.
T Consensus 266 --I~FvH~R--nV~~~~~~~~F~E~~hl~G~~DM~~v~kal~~~~~~gp~RPDHg~~m~gd~~ 324 (350)
T pfam03786 266 --IYFAHLR--NIKREEGPKDFYETAHLEGSTDMASVMKAYHEEGFRGPMRPDHGRTIWGDTK 324 (350)
T ss_pred --CCEEEEE--CCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf --0245430--1113589998475366678830999999999809998534899877478888
No 151
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=48.89 E-value=10 Score=17.60 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=14.7
Q ss_pred HHHCCCCEEEEECCCCC
Q ss_conf 87418873999838951
Q gi|254781012|r 27 RDTAKNFRRALVMPNID 43 (349)
Q Consensus 27 aa~aGG~TtV~~MPNT~ 43 (349)
=||+.||.-++.||-|-
T Consensus 77 vAAArGYkliltMPetM 93 (312)
T TIGR01139 77 VAAARGYKLILTMPETM 93 (312)
T ss_pred HHHHHCCEEEEECCCCH
T ss_conf 99871894999867432
No 152
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=47.59 E-value=17 Score=16.23 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHHHHC---CCCEEEEECCCC
Q ss_conf 46999999999999976---994189713888
Q gi|254781012|r 220 IPKREKHRLSLRKAALS---GNPRFFLGTDSA 248 (349)
Q Consensus 220 PlR~~~dr~aL~~ai~~---G~i~d~I~TDHA 248 (349)
+.|-.-=|||+|.|+.. |-...+||=|||
T Consensus 259 ~mryAGPREAl~HAiiRkN~GcThfIVGRDHA 290 (390)
T PRK04149 259 AMRYAGPREAIFHALVRKNYGCTHFIVGRDHA 290 (390)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 42447979999999999875996699766667
No 153
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=47.46 E-value=20 Score=15.88 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=18.6
Q ss_pred EEEECCCHHHHHHHHHHCCCCCEE----EECCCCCCCHHH
Q ss_conf 997057858999998705733202----302310039788
Q gi|254781012|r 170 IILEHITTSNGIDYVNNATNIAGS----ITVHHLIINRNA 205 (349)
Q Consensus 170 iHi~HiST~~sv~lir~ak~vtaE----VTPHHL~lt~~d 205 (349)
.++...||.+++++.|.++.++++ ++|-|.-.+.+.
T Consensus 78 aG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~g 117 (299)
T COG0329 78 AGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEG 117 (299)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHH
T ss_conf 8628777999999999999709999998489788989799
No 154
>KOG0336 consensus
Probab=46.15 E-value=18 Score=16.14 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=35.7
Q ss_pred EEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 023023100397886137888311321346999999999999976994189713888
Q gi|254781012|r 192 GSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSA 248 (349)
Q Consensus 192 aEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHA 248 (349)
-.|-.-||.- |+.-+++ ...+---=|++.|||.-++-+++|.+...|+||-|
T Consensus 474 ~K~~AD~LSS---d~~l~gi--~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDla 525 (629)
T KOG0336 474 RKVMADHLSS---DFCLKGI--SSQSLHGNREQSDREMALEDFKSGEVRILVATDLA 525 (629)
T ss_pred CHHHHHHCCC---HHHHCCC--CHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECHH
T ss_conf 1032210231---0211461--01102587224359999976415816999972234
No 155
>TIGR00633 xth exodeoxyribonuclease III (xth); InterPro: IPR004808 All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA.; GO: 0004518 nuclease activity, 0006281 DNA repair.
Probab=43.62 E-value=11 Score=17.50 Aligned_cols=47 Identities=9% Similarity=-0.135 Sum_probs=25.9
Q ss_pred CCCCCCHHH-H-----HCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEE----CCCCCCCH
Q ss_conf 310039788-6-----13788831132134699999999999997699418971----38886531
Q gi|254781012|r 197 HHLIINRNA-I-----FHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLG----TDSAPHWD 252 (349)
Q Consensus 197 HHL~lt~~d-~-----~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~----TDHAPH~~ 252 (349)
+|=+.+.-. - .+-++| ++.+|++|..+- .+..+ . .++-| |||||=..
T Consensus 220 ~YTwW~YR~K~ar~~N~GWRiD-y~l~s~~l~~~v-~d~~I------~-~~~rg~ekPSDHcPi~l 276 (279)
T TIGR00633 220 AYTWWDYRSKRARDRNRGWRID-YFLVSEPLAARV-VDSYI------D-SEVRGMEKPSDHCPIVL 276 (279)
T ss_pred CEEEEECCCCCCCCCCCCCEEE-EEECCHHHHHHH-HHHHC------C-CHHHCCCCCCCCCCEEE
T ss_conf 3125400236772467341453-265386899865-10001------3-03452788887355477
No 156
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=43.14 E-value=23 Score=15.47 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCCE--EEEC----CCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99999870573320--2302----3100397886137888311321346999999999999976994189713
Q gi|254781012|r 179 NGIDYVNNATNIAG--SITV----HHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGT 245 (349)
Q Consensus 179 ~sv~lir~ak~vta--EVTP----HHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~T 245 (349)
.+...+..||+|-. .+|- ||=.|.+ -.. ++.-+..+--=.|+.+.+.+.++++++|.|+-+|||
T Consensus 635 AAFkAV~~GKQVAvLVPTTlLA~QHy~tFke-RF~--~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT 704 (1139)
T COG1197 635 AAFKAVMDGKQVAVLVPTTLLAQQHYETFKE-RFA--GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT 704 (1139)
T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHH-HHC--CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 9999863797499992607868998999998-733--898258886055788999999999856984589963
No 157
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856 This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=42.49 E-value=18 Score=16.21 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.4
Q ss_pred HHHHCCCCEEEEECCCCC
Q ss_conf 987418873999838951
Q gi|254781012|r 26 LRDTAKNFRRALVMPNID 43 (349)
Q Consensus 26 ~aa~aGG~TtV~~MPNT~ 43 (349)
+.||+.||.-++.||-|.
T Consensus 79 MvAAarGYkliL~MPetm 96 (315)
T TIGR01136 79 MVAAARGYKLILTMPETM 96 (315)
T ss_pred HHHHHCCCCEEEECCCCH
T ss_conf 999861991899858871
No 158
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=42.19 E-value=24 Score=15.38 Aligned_cols=85 Identities=12% Similarity=-0.040 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE--------ECCCHHH
Q ss_conf 25654100688999999998739822202575555543001467654578999996206953997--------0578589
Q gi|254781012|r 108 NSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIIL--------EHITTSN 179 (349)
Q Consensus 108 ~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi--------~HiST~~ 179 (349)
+.++|..+....+++|..++....|+++-||+.........++.......-+ .+.-+|.+... +.-++++
T Consensus 132 ~~GDGa~~~G~f~EalN~A~~~~LPvlfv~enN~yaist~~~~~~~~~~~~~--r~~~~gi~~~~vDG~D~~~v~~~~~~ 209 (293)
T cd02000 132 FFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTSRQTAGTSIAD--RAAAYGIPGIRVDGNDVLAVYEAAKE 209 (293)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCEECCCCHHHHCCCCCHHH--HHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf 7168745514799999988653798799997487302356887327744877--35326987699748789999999999
Q ss_pred HHHHHHHCC-CCCEEE
Q ss_conf 999987057-332023
Q gi|254781012|r 180 GIDYVNNAT-NIAGSI 194 (349)
Q Consensus 180 sv~lir~ak-~vtaEV 194 (349)
+++.+|+++ ++-.|+
T Consensus 210 Ai~~~R~~~gP~lie~ 225 (293)
T cd02000 210 AVERARAGGGPTLIEA 225 (293)
T ss_pred HHHHHHCCCCCEEEEE
T ss_conf 9999853899889999
No 159
>TIGR02069 cyanophycinase cyanophycinase; InterPro: IPR011811 This entry describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.; GO: 0016787 hydrolase activity, 0044260 cellular macromolecule metabolic process.
Probab=40.47 E-value=25 Score=15.21 Aligned_cols=83 Identities=23% Similarity=0.195 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH---CCCC-----CCCCC------CHH--HHHHH-----HHHHHHCC
Q ss_conf 9999999999997699418971388865313321---5457-----75445------436--79999-----99997206
Q gi|254781012|r 223 REKHRLSLRKAALSGNPRFFLGTDSAPHWDSSKE---SSCG-----CAGIY------TAR--NALNC-----LAQIFEEE 281 (349)
Q Consensus 223 ~~~dr~aL~~ai~~G~i~d~I~TDHAPH~~eeK~---~~~~-----~~g~~------~~~--~~~~~-----~~~~~~~~ 281 (349)
.-.=-.+|.+-..+|.+ .++||==----..++. .+.. +.|.. .+. .+|.+ +-.-|.++
T Consensus 127 dTpl~~~lr~r~~~G~~-~~~GTSAGAaVMs~~MIV~G~sPaaLvLPvGa~e~P~~~~~~Ma~GLGl~~~v~iDQHF~~R 205 (297)
T TIGR02069 127 DTPLLDRLRKRVEEGKI-ILGGTSAGAAVMSDTMIVEGDSPAALVLPVGAEESPRKETVDMAPGLGLLKDVLIDQHFAQR 205 (297)
T ss_pred CCHHHHHHHHHHHCCEE-EEEECCCCHHHCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCEEEECHHHC
T ss_conf 87689999988638758-99964730222889616426898347762255778663503004677316874373061102
Q ss_pred CCHHHHHHHHHHCC--HHH-CCCCCCCC
Q ss_conf 99999999982431--788-18898885
Q gi|254781012|r 282 NKLENLESFVSING--ATW-YGIPVNTR 306 (349)
Q Consensus 282 ~~L~~l~~~~s~np--a~~-~gl~~~~~ 306 (349)
+-|-||..-+|.|| .++ +|++.+++
T Consensus 206 gRlGRLl~Ai~~~PPt~~LG~GIDEdTA 233 (297)
T TIGR02069 206 GRLGRLLSAIAQNPPTEVLGIGIDEDTA 233 (297)
T ss_pred CHHHHHHHHHHHCCCHHHCCCCCCCCEE
T ss_conf 2489999999737860024332225515
No 160
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=38.62 E-value=27 Score=15.03 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHH-CCCCCEEEEC-CCCCC-CHHHHH
Q ss_conf 5785899999870-5733202302-31003-978861
Q gi|254781012|r 174 HITTSNGIDYVNN-ATNIAGSITV-HHLII-NRNAIF 207 (349)
Q Consensus 174 HiST~~sv~lir~-ak~vtaEVTP-HHL~l-t~~d~~ 207 (349)
|||++-+--+... |-..=|=||| -||-| +.+|+.
T Consensus 308 HItsAIGgAiAa~~GAdfLCYVTPaEHL~LP~~eDVr 344 (433)
T PRK13352 308 HITSAIGGAIAAAAGADFLCYVTPAEHLGLPNVEDVR 344 (433)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCHHHCCCCCHHHHH
T ss_conf 8889999999986477637505808854899989999
No 161
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO). Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , ..
Probab=37.77 E-value=28 Score=14.95 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=19.9
Q ss_pred HHHHHHHHCC--HHHCCCCCCCC-EEEEEECCCCEEECH
Q ss_conf 9999982431--78818898885-289994797178471
Q gi|254781012|r 286 NLESFVSING--ATWYGIPVNTR-KISLKRREQPIIFDE 321 (349)
Q Consensus 286 ~l~~~~s~np--a~~~gl~~~~~-~i~l~d~~~~~~v~~ 321 (349)
.|++++..++ +.+|-|-.|.| |=+|.+|+..++-++
T Consensus 311 ~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~ 349 (492)
T TIGR01579 311 ELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDD 349 (492)
T ss_pred HHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHH
T ss_conf 999997347641632000022277379842487887689
No 162
>KOG1358 consensus
Probab=36.10 E-value=17 Score=16.33 Aligned_cols=15 Identities=13% Similarity=-0.031 Sum_probs=7.3
Q ss_pred ECCCCCCHHHHHHHH
Q ss_conf 213469999999999
Q gi|254781012|r 217 CLPIPKREKHRLSLR 231 (349)
Q Consensus 217 ~nPPlR~~~dr~aL~ 231 (349)
+-||.-...--+|+.
T Consensus 335 slPp~la~aa~~ai~ 349 (467)
T KOG1358 335 SLPPYLAGAAIKAIL 349 (467)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 475555456777777
No 163
>pfam05362 Lon_C Lon protease (S16) C-terminal proteolytic domain. The Lon serine proteases must hydrolyse ATP to degrade protein substrates. In Escherichia coli, these proteases are involved in turnover of intracellular proteins, including abnormal proteins following heat-shock. The active site for protease activity resides in a C-terminal domain. The Lon proteases are classified as family S16 in Merops.
Probab=34.67 E-value=31 Score=14.65 Aligned_cols=21 Identities=14% Similarity=0.136 Sum_probs=10.7
Q ss_pred ECCCCCCHHHHHHHHHHHHCC
Q ss_conf 213469999999999999769
Q gi|254781012|r 217 CLPIPKREKHRLSLRKAALSG 237 (349)
Q Consensus 217 ~nPPlR~~~dr~aL~~ai~~G 237 (349)
+-=|-..+.|-+.+-+.+++|
T Consensus 166 ViiP~~N~~dl~~ip~~i~~~ 186 (205)
T pfam05362 166 VIIPKENEKDLEEIPENVREG 186 (205)
T ss_pred EEECHHHHHHHHHHHHHHHCC
T ss_conf 997477766799834999769
No 164
>PRK13911 hypothetical protein; Provisional
Probab=34.35 E-value=13 Score=17.12 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=6.6
Q ss_pred EEECCCCCCCH
Q ss_conf 97138886531
Q gi|254781012|r 242 FLGTDSAPHWD 252 (349)
Q Consensus 242 ~I~TDHAPH~~ 252 (349)
+-+|||||=..
T Consensus 237 ~~~SDH~PV~l 247 (250)
T PRK13911 237 ILGSDHCPVGL 247 (250)
T ss_pred CCCCCCCCEEE
T ss_conf 99999757699
No 165
>PTZ00124 adenosine deaminase; Provisional
Probab=34.27 E-value=32 Score=14.61 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf 89999999987398222025755555430014676545789999962069539970578589999987057332023023
Q gi|254781012|r 118 RVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVNNATNIAGSITVH 197 (349)
Q Consensus 118 ~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir~ak~vtaEVTPH 197 (349)
...++|+.+++.|..+.+||.......+. +| .. ..+..+-+.+-|.=+++ +-..+-++.+++ ++|..||||-
T Consensus 207 ~f~~af~~Ar~~Gl~~T~HAGE~~~p~~i--~~--v~-~ai~~l~a~RIGHGv~~--~~Dp~L~~~l~e-~~I~LEvCPt 278 (362)
T PTZ00124 207 PFKDIFDRLREAGVNLSVHAGEDVTPPNL--NE--LY-AAILDLGVKRIGHGIRV--AESQELIDRVKE-KDILLEVCPI 278 (362)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCH--HH--HH-HHHHHHCCCCCCCCEEC--CCCHHHHHHHHH-CCCEEEECCC
T ss_conf 28999999998699543556755785459--99--99-99998097043575340--779899999986-5954898676
Q ss_pred CCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 10039788613788831132134699999999999997699418971388
Q gi|254781012|r 198 HLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDS 247 (349)
Q Consensus 198 HL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDH 247 (349)
-=+.+ +.. |-+. ++ -+.+-+..|-. ..|.||-
T Consensus 279 SNv~t------~~v-------~~~~--~H--Pi~~l~~~G~~-vtiNTDD 310 (362)
T PTZ00124 279 SNVLL------NNS-------KSMD--TH--PIRKLYDAGVK-VSVNSDD 310 (362)
T ss_pred CCCCC------CCC-------CCCC--CC--HHHHHHHCCCE-EEEECCC
T ss_conf 55334------566-------9832--17--19999978996-9994899
No 166
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=34.16 E-value=32 Score=14.59 Aligned_cols=85 Identities=8% Similarity=-0.056 Sum_probs=53.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE--------EECCCHHH
Q ss_conf 2565410068899999999873982220257555554300146765457899999620695399--------70578589
Q gi|254781012|r 108 NSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKII--------LEHITTSN 179 (349)
Q Consensus 108 ~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iH--------i~HiST~~ 179 (349)
+.++|-.+....+++|..++....|+++-||+..........+.... ..+.. .+.-+|.+.+ -++-++++
T Consensus 138 ~~GDGa~~~G~f~EalN~A~~~~lPvifv~eNN~yaist~~~~~~~~-~~i~~-ra~~~gi~~~~vDGnD~~av~~~~~~ 215 (315)
T TIGR03182 138 FFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYAMGTSVERSSSV-TDLYK-RGESFGIPGERVDGMDVLAVREAAKE 215 (315)
T ss_pred EECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHCCC-CHHHH-HHHHCCCCEEEEECCCHHHHHHHHHH
T ss_conf 95788665343999998874148988999952874155767775366-33666-55436998589835778999999999
Q ss_pred HHHHHHHCC-CCCEEE
Q ss_conf 999987057-332023
Q gi|254781012|r 180 GIDYVNNAT-NIAGSI 194 (349)
Q Consensus 180 sv~lir~ak-~vtaEV 194 (349)
+++.+|.++ ++-.|+
T Consensus 216 Ai~~~R~g~gP~lie~ 231 (315)
T TIGR03182 216 AVERARSGKGPILLEM 231 (315)
T ss_pred HHHHHHCCCCCEEEEE
T ss_conf 9999755999889998
No 167
>TIGR00683 nanA N-acetylneuraminate lyase; InterPro: IPR005264 N-acetylneuraminate lyase catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetyl-D-mannosamine. The enzyme plays an important role in the regulation of sialic acid metabolism in bacteria..
Probab=34.08 E-value=32 Score=14.59 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=28.9
Q ss_pred CCEEEEECCCHHHHHHHHHHCCC-----CCEEEECCCCCCCHHHH
Q ss_conf 95399705785899999870573-----32023023100397886
Q gi|254781012|r 167 NLKIILEHITTSNGIDYVNNATN-----IAGSITVHHLIINRNAI 206 (349)
Q Consensus 167 ~~~iHi~HiST~~sv~lir~ak~-----vtaEVTPHHL~lt~~d~ 206 (349)
.+=-|+--||+++++++-+.|+. ++| |||-|--|+=++.
T Consensus 72 ~LIA~VG~V~~~E~~~L~~~A~~~GyD~~SA-VTPFYY~FSF~E~ 115 (294)
T TIGR00683 72 KLIAQVGSVSLKEAVELAKYAKRLGYDALSA-VTPFYYKFSFEEI 115 (294)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCEEEC-CCCCCCCCCCHHH
T ss_conf 2210105203788999999888736711120-3666678873677
No 168
>PRK09213 purine operon repressor; Provisional
Probab=33.49 E-value=33 Score=14.53 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=24.5
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC
Q ss_conf 7498741887399983895148989899999999999838688469950134527
Q gi|254781012|r 24 TVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNALPPEYDFSPLMTIYLT 78 (349)
Q Consensus 24 ~t~aa~aGG~TtV~~MPNT~Ppi~t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt 78 (349)
+|.+-++||+..+ |..+.+...++.+...+........-++...|++
T Consensus 60 eTv~GaaGGv~yi--------P~~~~~~~~~fl~~l~~~L~~~~RiLPGGylYms 106 (274)
T PRK09213 60 ETIPGAAGGVKYI--------PYISEEEAREFVEELCERLSEPDRILPGGYLYLS 106 (274)
T ss_pred EEECCCCCCEEEE--------ECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEHH
T ss_conf 9805877874997--------0679899999999999984687727667402102
No 169
>pfam01964 ThiC ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.
Probab=31.41 E-value=36 Score=14.31 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHCCC-CEECCCCC
Q ss_conf 6889999999987398-22202575
Q gi|254781012|r 116 IDRVMPVLERMETIGM-PLCIHGEI 139 (349)
Q Consensus 116 ~~~~~~~le~~~~~~~-~i~~H~E~ 139 (349)
.+.+..+++.-++.|. -+.+||-.
T Consensus 138 ~d~~~~~ie~qa~~GVDfmTiH~Gi 162 (421)
T pfam01964 138 EDDLFDVIEEQAKDGVDFMTIHAGV 162 (421)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCH
T ss_conf 9999999999997288778740001
No 170
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=31.02 E-value=36 Score=14.27 Aligned_cols=87 Identities=10% Similarity=-0.015 Sum_probs=42.4
Q ss_pred CCCCEEEECCCCCCCHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCCCCC
Q ss_conf 7332023023100397886137888311321346999999999999976-994189713888653133215457754454
Q gi|254781012|r 188 TNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALS-GNPRFFLGTDSAPHWDSSKESSCGCAGIYT 266 (349)
Q Consensus 188 k~vtaEVTPHHL~lt~~d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~-G~i~d~I~TDHAPH~~eeK~~~~~~~g~~~ 266 (349)
..|..|+|-..++-.. +.. + -|.-.+...||+..+. |.. -+|+||- |..-+=..+.
T Consensus 133 ~gV~lEI~~~~~l~~~--------~~~-R----~~~i~n~~~l~~l~r~yg~p-ivisS~A--~s~ldlR~p~------- 189 (237)
T PRK00912 133 NNVAIEIILRDILHSR--------GGR-R----ARTLSQIRANLALHRKYDFP-LVLSSGA--MSCYDLRSPK------- 189 (237)
T ss_pred CCEEEEEECCHHHCCC--------CCH-H----HHHHHHHHHHHHHHHHCCCC-EEEECCC--CCHHHHCCHH-------
T ss_conf 4907999652443367--------216-8----99998799999999866998-8996799--9844417999-------
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC
Q ss_conf 367999999997206999999999824317881889
Q gi|254781012|r 267 ARNALNCLAQIFEEENKLENLESFVSINGATWYGIP 302 (349)
Q Consensus 267 ~~~~~~~~~~~~~~~~~L~~l~~~~s~npa~~~gl~ 302 (349)
-+-.+.. .-+.+-++..+-+|.+|.+++.-.
T Consensus 190 ---d~~~l~~--~~Gl~~~~a~~als~~p~~il~~~ 220 (237)
T PRK00912 190 ---EMIALAE--VFGLEEDEALEALTSVPEKIIEKN 220 (237)
T ss_pred ---HHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf ---9999999--859999999999999899999845
No 171
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=30.64 E-value=15 Score=16.58 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=8.6
Q ss_pred HCCCCEEEEECC-CCCC
Q ss_conf 418873999838-9514
Q gi|254781012|r 29 TAKNFRRALVMP-NIDP 44 (349)
Q Consensus 29 ~aGG~TtV~~MP-NT~P 44 (349)
.+|=...++++= |-.|
T Consensus 17 ~~g~~~~aiA~Dv~~gP 33 (204)
T pfam04816 17 KNNLASFAIAGEVNKGP 33 (204)
T ss_pred HCCCCCEEEEEECCHHH
T ss_conf 77998779996166749
No 172
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=30.45 E-value=32 Score=14.63 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHC---CCCEEEEECCCCC
Q ss_conf 46999999999999976---9941897138886
Q gi|254781012|r 220 IPKREKHRLSLRKAALS---GNPRFFLGTDSAP 249 (349)
Q Consensus 220 PlR~~~dr~aL~~ai~~---G~i~d~I~TDHAP 249 (349)
-.|-...|||+|.||.. |-...++|-|||=
T Consensus 257 aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAG 289 (397)
T COG2046 257 AMRYAGPREALLHAIIRKNYGCTHFIVGRDHAG 289 (397)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 864048378889999985059702665677787
No 173
>PRK00208 thiG thiazole synthase; Reviewed
Probab=30.41 E-value=37 Score=14.21 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=14.8
Q ss_pred HHCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEECCCC
Q ss_conf 2104551002565410068899999999873982220257
Q gi|254781012|r 99 KLYFAGSTTNSHHGIRNIDRVMPVLERMETIGMPLCIHGE 138 (349)
Q Consensus 99 k~~~~~~~~~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E 138 (349)
.+++-++...++.|+.|...++.+.+. .+.|+++-+.
T Consensus 148 avMPlgsPIGSg~Gl~n~~~l~~i~e~---~~vPvIVDAG 184 (256)
T PRK00208 148 AVMPLGAPIGSGLGLLNPYNLRIIIEQ---ADVPVIVDAG 184 (256)
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHH---CCCCEEEECC
T ss_conf 452045643479887999999999986---7998898578
No 174
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=29.75 E-value=36 Score=14.27 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=40.2
Q ss_pred CCCC-CEEEEEEEEEECCCCCHHHHHHHHHCCCEEEHHHCCCCCEECCC-CC-----CC-HHHHHHHHHHHHHHCCCCEE
Q ss_conf 8688-46995013452789998899874406872102210455100256-54-----10-06889999999987398222
Q gi|254781012|r 63 LPPE-YDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSH-HG-----IR-NIDRVMPVLERMETIGMPLC 134 (349)
Q Consensus 63 ~~~~-~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~-~~-----v~-~~~~~~~~le~~~~~~~~i~ 134 (349)
.... .-|-++|.| .++++-+..++++..-. ++.+.-+|++..++ .| |- -.+.+-++|+.++..+=+++
T Consensus 447 ~~GpqIlClvGPPG-VGKTSlg~SIA~ALnRk---FvR~SlGG~~DeAEIrGHRRTYvGAMPGriiQ~lk~~~t~NPl~L 522 (941)
T TIGR00763 447 MKGPQILCLVGPPG-VGKTSLGKSIAKALNRK---FVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLIL 522 (941)
T ss_pred CCCCEEEEEECCCC-CCHHHHHHHHHHHHCCE---EEEEEECCCEEHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 88876787207269-54222789999996880---499952672203112786432034672578999876041588068
Q ss_pred C
Q ss_conf 0
Q gi|254781012|r 135 I 135 (349)
Q Consensus 135 ~ 135 (349)
+
T Consensus 523 l 523 (941)
T TIGR00763 523 L 523 (941)
T ss_pred E
T ss_conf 6
No 175
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=26.83 E-value=23 Score=15.54 Aligned_cols=28 Identities=7% Similarity=-0.027 Sum_probs=14.5
Q ss_pred HHHHHCCCEEEEECC-CHHHHHHHHHHCC
Q ss_conf 996206953997057-8589999987057
Q gi|254781012|r 161 LRNKLPNLKIILEHI-TTSNGIDYVNNAT 188 (349)
Q Consensus 161 ~~a~~~~~~iHi~Hi-ST~~sv~lir~ak 188 (349)
++...+|.+....-. |..+.++.+++++
T Consensus 334 lIs~rtGL~Fe~v~~~~~~~~~~~l~~g~ 362 (1197)
T PRK09959 334 IITLQTGLNFSPITVSHNIHAGTQLNPGG 362 (1197)
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHCCC
T ss_conf 99998796689983698799999987698
No 176
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=25.83 E-value=45 Score=13.71 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 4664237508817889874987418873999838951
Q gi|254781012|r 7 RVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMPNID 43 (349)
Q Consensus 7 p~~~D~HvH~Reg~~~~~t~aa~aGG~TtV~~MPNT~ 43 (349)
-+-+|+++|--.++..+.-.....|.++.++.||.-.
T Consensus 27 ~~~VDl~~h~~n~~~f~~ii~~~~~~y~~yVi~p~~~ 63 (247)
T cd06276 27 NAQVDLYFHHYNEDLFKNIISNTKGKYSGYVVMPHFK 63 (247)
T ss_pred CEEEEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 7289999996778999999985017778899985784
No 177
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=25.69 E-value=42 Score=13.88 Aligned_cols=120 Identities=10% Similarity=0.120 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH------
Q ss_conf 41006889999999987398222025755555430014676545789999962069539970578589999987------
Q gi|254781012|r 112 GIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGIDYVN------ 185 (349)
Q Consensus 112 ~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi~HiST~~sv~lir------ 185 (349)
|......|-+.|-.-...-.||++|=- +..+-|.+ +..+.+.|+..-+=-+|++=.|=|..=|
T Consensus 63 G~~~~~~mV~~L~E~~~~tVPVaLHLD------HG~s~E~c-----~~AI~aGfsSVMIDgShlP~EEN~~~Tkkvve~A 131 (339)
T TIGR01859 63 GYKVAVAMVKTLIESMSITVPVALHLD------HGSSYESC-----IKAIKAGFSSVMIDGSHLPFEENVALTKKVVEIA 131 (339)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECC------CCCCHHHH-----HHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 899999999999986799320686468------87648999-----9999649816720242687888888889999999
Q ss_pred HCCC--CCEEEECCCCCCCHHH--HHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEE---EEECCCC--CCCHH
Q ss_conf 0573--3202302310039788--613788831132134699999999999997699418---9713888--65313
Q gi|254781012|r 186 NATN--IAGSITVHHLIINRNA--IFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRF---FLGTDSA--PHWDS 253 (349)
Q Consensus 186 ~ak~--vtaEVTPHHL~lt~~d--~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d---~I~TDHA--PH~~e 253 (349)
.++. ||.|.=.=-|==.+|+ +.+. +. . |=..++-+.+.+-. .||. -|||=|- |++.+
T Consensus 132 h~~GDYvSVEaElG~~gG~ED~i~V~~~--~~--~----ladp~Ea~~fV~eT---~~D~LA~aIGt~HGa~kykge 197 (339)
T TIGR01859 132 HAKGDYVSVEAELGTIGGIEDGIVVVEK--EG--E----LADPDEAEQFVKET---GVDYLAAAIGTSHGAFKYKGE 197 (339)
T ss_pred HHCCCEEEEEEEECEECCEECCEEEEEC--CC--E----ECCHHHHHHHHHHC---CCCEECCCCCCCCCCCCCCCC
T ss_conf 8519979999984303527627378715--63--6----75879999999763---877540100350235788866
No 178
>pfam01747 ATP-sulfurylase ATP-sulfurylase. This family consists of ATP-sulfurylase or sulfate adenylyltransferase EC:2.7.7.4 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase pfam01583. Both enzymes are required for PAPS (phosphoadenosine-phosphosulfate) synthesis from inorganic sulphate. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulfate APS from ATP and inorganic sulphate.
Probab=24.49 E-value=47 Score=13.55 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHC---CCCEEEEECCCCC
Q ss_conf 6999999999999976---9941897138886
Q gi|254781012|r 221 PKREKHRLSLRKAALS---GNPRFFLGTDSAP 249 (349)
Q Consensus 221 lR~~~dr~aL~~ai~~---G~i~d~I~TDHAP 249 (349)
.|-..-|||+|.|+.. |-...+||=|||-
T Consensus 191 mryAGPrEallhAiirkN~GcthfivGrdHAG 222 (310)
T pfam01747 191 MRYAGPREALLHAIIRKNYGCTHFIVGRDHAG 222 (310)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 02267178899999999769972655665578
No 179
>COG4309 Uncharacterized conserved protein [Function unknown]
Probab=24.35 E-value=38 Score=14.13 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=18.2
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHH
Q ss_conf 9999976994189713888653133
Q gi|254781012|r 230 LRKAALSGNPRFFLGTDSAPHWDSS 254 (349)
Q Consensus 230 L~~ai~~G~i~d~I~TDHAPH~~ee 254 (349)
.+..|+.|.... |-+||-|++.-.
T Consensus 27 ~~g~L~~Ge~le-iisDHdP~pL~~ 50 (98)
T COG4309 27 MLGKLKEGESLE-IISDHDPRPLRY 50 (98)
T ss_pred HHCCCCCCCCEE-EECCCCCHHHHH
T ss_conf 752568887447-642789678999
No 180
>PRK08392 hypothetical protein; Provisional
Probab=24.02 E-value=48 Score=13.50 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=28.3
Q ss_pred CEEEEECCC----HHHHHHHHHHHCCCCEEEEE---CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 423750881----78898749874188739998---3895148989899999999999
Q gi|254781012|r 10 DDWHLHLRD----GEILKTVLRDTAKNFRRALV---MPNIDPPIITVDDACAYRQRIL 60 (349)
Q Consensus 10 ~D~HvH~Re----g~~~~~t~aa~aGG~TtV~~---MPNT~Ppi~t~e~~~~~~~r~~ 60 (349)
+|+|+|..- +.+..-.+||..-|+..+.. +|-. +...+..|.+.+.
T Consensus 1 iDlHtHT~~Sdg~~ti~E~~~aA~~~Gl~~i~ITDH~~~~-----~~~~~~~~~~~i~ 53 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNVAWAEKRGLKLLGISDHIHYF-----TPSKFNRYINEIR 53 (215)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC-----CHHHHHHHHHHHH
T ss_conf 9665587844677879999999998799489980699988-----8289999999999
No 181
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.42 E-value=49 Score=13.43 Aligned_cols=24 Identities=8% Similarity=0.120 Sum_probs=11.1
Q ss_pred EEEEECCCHHHHHHHHHHCCCCCE
Q ss_conf 399705785899999870573320
Q gi|254781012|r 169 KIILEHITTSNGIDYVNNATNIAG 192 (349)
Q Consensus 169 ~iHi~HiST~~sv~lir~ak~vta 192 (349)
-+++...||.+++++.+.++..++
T Consensus 69 i~~vg~~~~~~ai~la~~A~~~Ga 92 (279)
T cd00953 69 IFQVGSLNLEESIELARAAKSFGI 92 (279)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 899777879999999999997799
No 182
>PRK07328 histidinol-phosphatase; Provisional
Probab=23.35 E-value=50 Score=13.42 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=32.8
Q ss_pred CCEEEEECC---C--HHHHHHHHHHHCCCCEEEEE---CCCCC-CC-------CCCHHHHHHHHHHHHH
Q ss_conf 642375088---1--78898749874188739998---38951-48-------9898999999999998
Q gi|254781012|r 9 PDDWHLHLR---D--GEILKTVLRDTAKNFRRALV---MPNID-PP-------IITVDDACAYRQRILN 61 (349)
Q Consensus 9 ~~D~HvH~R---e--g~~~~~t~aa~aGG~TtV~~---MPNT~-Pp-------i~t~e~~~~~~~r~~~ 61 (349)
.+|.|+|.- + +.+..-..+|++-|++.++. +|-.. |+ .-+.+.+..|.+.+.+
T Consensus 2 ~~D~H~HT~~s~~a~~~~ee~v~~Ai~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~ 70 (268)
T PRK07328 2 LVDSHLHTPLCGHATGTPEEYVEEARAKGLAEIGFTDHLPMYWLPPEWYDPPWAMRLEELPAYVSEVLR 70 (268)
T ss_pred CEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 847454799889988819999999998799989972799977787444585434568889999999999
No 183
>TIGR01584 citF citrate lyase, alpha subunit; InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis has been experimentally characterised . ; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex.
Probab=23.09 E-value=16 Score=16.47 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=5.9
Q ss_pred EEEEECCCHHH
Q ss_conf 23750881788
Q gi|254781012|r 11 DWHLHLRDGEI 21 (349)
Q Consensus 11 D~HvH~Reg~~ 21 (349)
=+|=|||+||+
T Consensus 47 SFHHhfR~GDy 57 (496)
T TIGR01584 47 SFHHHFREGDY 57 (496)
T ss_pred HHHHHCCCCCE
T ss_conf 12332068875
No 184
>pfam00676 E1_dh Dehydrogenase E1 component. This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase.
Probab=22.95 E-value=51 Score=13.37 Aligned_cols=86 Identities=9% Similarity=-0.071 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE--------ECCCHHH
Q ss_conf 25654100688999999998739822202575555543001467654578999996206953997--------0578589
Q gi|254781012|r 108 NSHHGIRNIDRVMPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIIL--------EHITTSN 179 (349)
Q Consensus 108 ~~~~~v~~~~~~~~~le~~~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~~~~~iHi--------~HiST~~ 179 (349)
+.++|-.+....+++|..+.....|+++.||+..........+...... +. ..+.-+|.+... ++-.+++
T Consensus 132 ~~GDGa~~~G~f~EalN~A~~~~lPvifv~eNN~yaist~~~~~~~~~~-i~-~ra~~~gi~~~~vDG~D~~~v~~~~~~ 209 (303)
T pfam00676 132 LFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAISTPAERSSASTY-YA-DRARGYGIPGIRVDGMDPLAVYQAVKF 209 (303)
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHCCCCC-HH-HHHHHCCCEEEECCCCCHHHHHHHHHH
T ss_conf 9679975232999999987543898799995277336666645147554-88-886525802896488658999999999
Q ss_pred HHHHHHHCC-CCCEEEE
Q ss_conf 999987057-3320230
Q gi|254781012|r 180 GIDYVNNAT-NIAGSIT 195 (349)
Q Consensus 180 sv~lir~ak-~vtaEVT 195 (349)
+++.+|+++ ++-.|+.
T Consensus 210 a~~~aR~g~gP~lie~~ 226 (303)
T pfam00676 210 AAERARTGNGPTLIELV 226 (303)
T ss_pred HHHHHHCCCCCEEEEEE
T ss_conf 99998648998899875
No 185
>TIGR01120 rpiB ribose 5-phosphate isomerase B; InterPro: IPR004785 Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology . This entry represents the RpiB enzyme.; GO: 0004751 ribose-5-phosphate isomerase activity, 0006098 pentose-phosphate shunt.
Probab=22.21 E-value=41 Score=13.94 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=7.0
Q ss_pred EECCCCCCCHHHH
Q ss_conf 7138886531332
Q gi|254781012|r 243 LGTDSAPHWDSSK 255 (349)
Q Consensus 243 I~TDHAPH~~eeK 255 (349)
||||||=....||
T Consensus 4 iGsDHaGf~Lke~ 16 (143)
T TIGR01120 4 IGSDHAGFILKEK 16 (143)
T ss_pred EECCCCCCHHHHH
T ss_conf 5058656234788
No 186
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF; InterPro: IPR004421 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesized as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins , , . Members of the HypF family are accessory proteins involved in hydrogenase maturation. They contain the following domains: acylphosphatase, zinc fingers (2 repeats), a YrdC-like domain, and a C-terminal domain with a putative O-carbamoyltransferase motif. The presence of CO and CN- ligands of the active site iron atoms is essential for [NiFe]-hydrogenase enzyme activity . Both ligands have been suggested to originate from carbamoylphosphate , which is required for maturation of [NiFe]-hydrogenases . Escherichia coli HypF interacts with carbamoylphosphate as a substrate and releases inorganic phosphate . In addition, HypF also cleaves ATP into AMP and pyrophosphate in the presence of carbamoylphosphate. This, and the fact that HypF catalyzes a carbamoylphosphate-dependent pyrophosphate ATP exchange reaction, suggest that the protein catalyzes the activation of carbamoylphosphate . The mechanism of action of HypF, as well as of its individual domains, is not yet clear. Mutations in any of the three major signature motifs, the acylphosphatase, the zinc fingers, and the O-carbamoyltransferase motif, can block carbamoylphosphate phosphatase activity. This indicates an integrated cooperativity between these domains in the cleavage reaction . The N-terminal acylphosphatase (ACP) domain is thought to support the conversion of carbamoylphosphate into CO and CN- , . Biochemical results demonstrating its ACP activity are not available , . ACPs are small enzymes that specifically catalyze the hydrolysis of carboxylphosphate bonds in acylphosphates, including carbamoylphosphate . Zinc fingers have been implicated in bivalent cation binding or as part of a chaperone domain interacting with the large subunit precursor, but experimental studies on such a function are lacking thus far. The YrdC-like domain is present in protein families with regulatory functions (IPR012200 from INTERPRO, IPR010923 from INTERPRO) and has been implicated in RNA binding . It is not clear what function it may have in members of the HypF family. A C-terminal domain is distantly related to peptidase M22, but contains a conserved O-carbamoyltransferase motif required for the carbamoylphosphate phosphatase activity . The function of this domain is not clear. Nomenclature note: the following names are used as synonyms of HypF: HupY in Azotobacter chroococcum, HupN in Rhizobium leguminosarum, HydA in Escherichia coli. In other organisms, these names are used to designate various "hydrogenase cluster" proteins unrelated to the members of this family. ; GO: 0030528 transcription regulator activity.
Probab=21.84 E-value=27 Score=15.05 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=8.6
Q ss_pred CCCCCHHHHHHHHHHHHCC
Q ss_conf 3469999999999999769
Q gi|254781012|r 219 PIPKREKHRLSLRKAALSG 237 (349)
Q Consensus 219 PPlR~~~dr~aL~~ai~~G 237 (349)
|+..+.++-..=+++|.||
T Consensus 335 P~~idn~~~l~~L~gIaDg 353 (799)
T TIGR00143 335 PMAIDNEEILEKLQGIADG 353 (799)
T ss_pred CCCCCHHHHHHHHCCCCCC
T ss_conf 8865779998861224150
No 187
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=21.15 E-value=55 Score=13.14 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHC---CCCEEEEECCCCCCC
Q ss_conf 46999999999999976---994189713888653
Q gi|254781012|r 220 IPKREKHRLSLRKAALS---GNPRFFLGTDSAPHW 251 (349)
Q Consensus 220 PlR~~~dr~aL~~ai~~---G~i~d~I~TDHAPH~ 251 (349)
+.|-.--|||||.|+.. |-...+||-|||---
T Consensus 260 ~Mr~AGPREAl~HAiiRkNyGcTHfIVGRDHAGpg 294 (568)
T PRK05537 260 AMRMAGPREALWHGIIRRNYGCTHFIVGRDHAGPG 294 (568)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCC
T ss_conf 54546818999999988616986334336778888
No 188
>pfam04106 APG5 Autophagy protein Apg5. Apg5 is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway.
Probab=20.79 E-value=56 Score=13.10 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999976994
Q gi|254781012|r 224 EKHRLSLRKAALSGNP 239 (349)
Q Consensus 224 ~~dr~aL~~ai~~G~i 239 (349)
++|...||+++++++-
T Consensus 75 k~d~~qLW~sv~~~~~ 90 (195)
T pfam04106 75 KADSKQLWKSVVNHNF 90 (195)
T ss_pred HHHHHHHHHHHHHCCH
T ss_conf 9899999999884789
No 189
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=20.19 E-value=58 Score=13.02 Aligned_cols=171 Identities=13% Similarity=0.113 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCE-EEHHHCCCCCEECCCCCCCHHHHHHHHHHHH
Q ss_conf 989999999999983868846995013452789998899874406872-1022104551002565410068899999999
Q gi|254781012|r 48 TVDDACAYRQRILNALPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLV-QAIKLYFAGSTTNSHHGIRNIDRVMPVLERM 126 (349)
Q Consensus 48 t~e~~~~~~~r~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~-~~~k~~~~~~~~~~~~~v~~~~~~~~~le~~ 126 (349)
+.+.+.+...++.+....+..+.....+++......+...+..+...- ....+. +.-.+++...........+|+.+
T Consensus 117 ~~~~~~e~~~~~~~~~~~~~gi~s~li~~~~r~~~~e~~~~~~~~a~~~~~~~~~--~~~l~~~e~~~p~~~f~~~f~~~ 194 (345)
T COG1816 117 SVDTVVEGLIAGFRPAERDFGIHSKLIVCLLRHLGFESADEELELALRYRDKLVT--GVGLAGSESGYPPELFVSLFKLA 194 (345)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8999999999999877643697520378887625799999999998642432576--67888511037789999999999
Q ss_pred HHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCCHH
Q ss_conf 873982220257555554300146765457899999620--695399705785899999870573320230231003978
Q gi|254781012|r 127 ETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKL--PNLKIILEHITTSNGIDYVNNATNIAGSITVHHLIINRN 204 (349)
Q Consensus 127 ~~~~~~i~~H~E~~~~~~~~~~~E~~~~~~~l~~~~a~~--~~~~iHi~HiST~~sv~lir~ak~vtaEVTPHHL~lt~~ 204 (349)
+..|..+..||...... +.+...++..-+++ .|.++- . ..+-+.++.+ ++|..||||=-
T Consensus 195 r~~gl~lt~HaGE~~~~--------~~i~~al~~~~~~rI~HGi~~~--~--d~~L~~~l~~-~qI~levCP~S------ 255 (345)
T COG1816 195 RDNGLKLTIHAGEAGGP--------ESIRDALDLLGAERIGHGIRAI--E--DPELLYRLAE-RQIPLEVCPLS------ 255 (345)
T ss_pred HHCCCEEEEECCCCCCC--------HHHHHHHHHHCHHHHCCCCCCC--C--CHHHHHHHHH-HCCEEEECCCC------
T ss_conf 97695288862666882--------8789999872525506662302--5--8999999998-09806777762------
Q ss_pred HHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 86137888311321346999999999999976994189713888653
Q gi|254781012|r 205 AIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGTDSAPHW 251 (349)
Q Consensus 205 d~~~~~~~~~~k~nPPlR~~~dr~aL~~ai~~G~i~d~I~TDHAPH~ 251 (349)
.+..+.+ |.++.-- +.+-+.-|. ...|.||-.+..
T Consensus 256 Ni~~~~v-------~~~~~hP----f~~~~d~Gv-~VsLnTDdp~~f 290 (345)
T COG1816 256 NIQLGVV-------PSLAKHP----FKKLFDAGV-KVSLNTDDPLYF 290 (345)
T ss_pred HHHCCCC-------CCHHHCC----HHHHHHCCC-CEEECCCCHHHC
T ss_conf 0210234-------5153490----999997698-168757983223
Done!