RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781012|ref|YP_003065425.1| dihydroorotase [Candidatus
Liberibacter asiaticus str. psy62]
(349 letters)
>gnl|CDD|180092 PRK05451, PRK05451, dihydroorotase; Provisional.
Length = 345
Score = 582 bits (1502), Expect = e-167
Identities = 185/344 (53%), Positives = 245/344 (71%), Gaps = 3/344 (0%)
Query: 1 MKKISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRIL 60
M+ +++R PDDWHLHLRDG +LK V+ TA+ F RA+VMPN+ PP+ TV A AYR+RIL
Sbjct: 2 MQTLTIRRPDDWHLHLRDGAMLKAVVPYTARQFGRAIVMPNLVPPVTTVAQALAYRERIL 61
Query: 61 NALPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVM 120
ALP +F PLMT+YLT+ TDPD++E+ S +V A KLY AG+TTNS G+ +I+++
Sbjct: 62 AALPAGSNFEPLMTLYLTDNTDPDELERAKASGVVTAAKLYPAGATTNSDAGVTDIEKIY 121
Query: 121 PVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNG 180
PVLE M+ +GMPL +HGE+ + DIDIFDRE +FID++L+PLR + P LKI+ EHITT +
Sbjct: 122 PVLEAMQKLGMPLLVHGEVTDPDIDIFDREAVFIDRVLEPLRRRFPKLKIVFEHITTKDA 181
Query: 181 IDYVNNA-TNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNP 239
+DYV A N+A +IT HHL+INRN + G+ PH YCLPI KRE HR +LR+AA SGNP
Sbjct: 182 VDYVREANDNLAATITPHHLLINRNDMLVGGIRPHLYCLPILKRETHRQALREAATSGNP 241
Query: 240 RFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWY 299
+FFLGTDSAPH +KES+CGCAGI++A AL A++FEE L+ LE+F S+NG +Y
Sbjct: 242 KFFLGTDSAPHARHAKESACGCAGIFSAPAALELYAEVFEEAGALDKLEAFASLNGPDFY 301
Query: 300 GIPVNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLYWEV 343
G+P NT I+L R + E I ++ F L W V
Sbjct: 302 GLPRNTDTITLVREPWTV--PESIPFGDETVVPFRAGETLRWSV 343
>gnl|CDD|178209 PLN02599, PLN02599, dihydroorotase.
Length = 364
Score = 432 bits (1112), Expect = e-122
Identities = 164/314 (52%), Positives = 224/314 (71%), Gaps = 2/314 (0%)
Query: 1 MKKISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRIL 60
++++ PDDWHLHLRDG L V+ +A++F RA+VMPN+ PP+ T A AYR+RI+
Sbjct: 20 GTELTITRPDDWHLHLRDGAKLAAVVPHSARHFGRAIVMPNLKPPVTTTARALAYRERIM 79
Query: 61 NALPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVM 120
ALPP F PLMT+YLT+ T P++++ S +V A+KLY AG+TTNS G+ ++ + +
Sbjct: 80 KALPPGSSFEPLMTLYLTDNTTPEEIKAAKASGVVFAVKLYPAGATTNSQAGVTDLGKCL 139
Query: 121 PVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNG 180
PVLE M GMPL +HGE+ + +DIFDRE +FID IL PL KLP LKI++EHITT +
Sbjct: 140 PVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQKLPQLKIVMEHITTMDA 199
Query: 181 IDYVNNAT--NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGN 238
+++V + N+A ++T HL++NRNA+F GL PH YCLP+ KRE HR +L KAA SG+
Sbjct: 200 VEFVESCGDGNVAATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREALVKAATSGS 259
Query: 239 PRFFLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATW 298
+FFLGTDSAPH +KE+SCGCAGIY+A AL+ A+ FEE L+ LE+F S NG +
Sbjct: 260 KKFFLGTDSAPHPKRAKEASCGCAGIYSAPVALSLYAKAFEEAGALDKLEAFTSFNGPDF 319
Query: 299 YGIPVNTRKISLKR 312
YG+P NT I+L +
Sbjct: 320 YGLPRNTSTITLVK 333
>gnl|CDD|129935 TIGR00856, pyrC_dimer, dihydroorotase, homodimeric type. This
homodimeric form of dihydroorotase is less common in
microbial genomes than a related dihydroorotase that
appears in a complex with aspartyltranscarbamoylase or
as a homologous domain in multifunctional proteins of
pyrimidine biosynthesis in higher eukaryotes.
Length = 341
Score = 414 bits (1065), Expect = e-116
Identities = 176/316 (55%), Positives = 237/316 (75%), Gaps = 1/316 (0%)
Query: 3 KISLRVPDDWHLHLRDGEILKTVLRDTAKNFRRALVMPNIDPPIITVDDACAYRQRILNA 62
++++R PDDWHLHLRDG +LK VL T++ F RA+VMPN+ PP+ TV+ A AYR+RIL+A
Sbjct: 1 ELTIRRPDDWHLHLRDGAMLKAVLPYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDA 60
Query: 63 LPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGSTTNSHHGIRNIDRVMPV 122
+P +DF+PLMT+YLT++ P+++E+ +V+A+KLY AG+TTNS HG+ +ID +MPV
Sbjct: 61 VPAGHDFTPLMTLYLTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPV 120
Query: 123 LERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNKLPNLKIILEHITTSNGID 182
LE ME IG+PL +HGE+ + DIDIFDRE FI+ +L+PLR + P LK++LEHITT + ID
Sbjct: 121 LEAMEKIGLPLLLHGEVTHGDIDIFDREARFIESVLEPLRQRFPALKVVLEHITTKDAID 180
Query: 183 YVNNATN-IAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKREKHRLSLRKAALSGNPRF 241
YV + N +A +IT HL+ RN + G+NPH YCLPI KR H+ +L + A SG P+F
Sbjct: 181 YVEDGNNRLAATITPQHLMFTRNDLLGGGVNPHLYCLPILKRNIHQQALLELAASGFPKF 240
Query: 242 FLGTDSAPHWDSSKESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYGI 301
FLGTDSAPH KESSCGCAG ++A AL A++FEE N LENLE+F S NG +YG+
Sbjct: 241 FLGTDSAPHARHRKESSCGCAGCFSAPTALPSYAEVFEEMNALENLEAFCSDNGPQFYGL 300
Query: 302 PVNTRKISLKRREQPI 317
PVN+ KI L ++EQ I
Sbjct: 301 PVNSTKIELVKKEQQI 316
>gnl|CDD|162070 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex
type. All proteins described by this model should
represent active and inactive dihydroorotase per se and
functionally equivalent domains of multifunctional
proteins from higher eukaryotes, but exclude related
proteins such as allantoinase.
Length = 411
Score = 56.3 bits (136), Expect = 1e-08
Identities = 82/354 (23%), Positives = 129/354 (36%), Gaps = 68/354 (19%)
Query: 11 DWHLHLRD-GEILKTVLRDTAK-----NFRRALVMPNIDPPIITVDDACAYRQRILNALP 64
D H+HLRD GE K + +K F MPN PPI D ++
Sbjct: 43 DLHVHLRDPGEEYKEDIESGSKAAAHGGFTTVADMPNTKPPI---DTPETLEWKLQRLKK 99
Query: 65 PEY-DFSPLMTIYLTETTDPDDVEKGFTSQLVQAIKLYFAGST----TNSHHGIRNIDRV 119
D + T+ +L +A +L AG+ T+ +++I +
Sbjct: 100 VSLVDVHLYGGV--TQGNQGK--------ELTEAYELKEAGAVGRMFTDDGSEVQDILSM 149
Query: 120 MPVLERMETIGMPLCIHGEILNQDIDIFDRELMFIDKILDPLRNK--------------L 165
LE G+P+ +H E D D+ +M L L
Sbjct: 150 RRALEYAAIAGVPIALHAE----DPDLIYGGVMHEGPSAAQLGLPARPPEAEEVAVARLL 205
Query: 166 PNLKII-----LEHITTSNGIDYVNNA----TNIAGSITVHHLIINRNAIFHDG----LN 212
K + HI+T ++ + A I +T HHL+++ + +N
Sbjct: 206 ELAKHAGCPVHICHISTKESLELIVKAKSQGIKITAEVTPHHLLLSEEDVARLDGNGKVN 265
Query: 213 PHYYCLPIPKREKH-RLSLRKAALSGNPRFFLGTDSAPH--WDSSKESSCGCAGIYTARN 269
P P REK RL+L + G TD APH + +KE + GI
Sbjct: 266 P-------PLREKEDRLALIEGLKDGIIDII-ATDHAPHTLEEKTKEFAAAPPGIPGLET 317
Query: 270 ALNCLAQIFEEEN-KLENLESFVSINGATWYGIPVNTRKISLKRREQPIIFDEK 322
AL L Q+ + L++L +SIN A +G+P + + +FD K
Sbjct: 318 ALPLLLQLLVKGLISLKDLIRMLSINPARIFGLP-DKGTLEEGNPADITVFDLK 370
>gnl|CDD|181796 PRK09357, pyrC, dihydroorotase; Validated.
Length = 423
Score = 31.7 bits (73), Expect = 0.29
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 174 HITTSNGIDYVNNA----TNIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKR-EKHRL 228
H++T+ ++ + A + +T HHL++ + +P+Y P P R E+ R
Sbjct: 231 HVSTAGSVELIRWAKALGIKVTAEVTPHHLLLTDEDLL--TYDPNYKVNP-PLRTEEDRE 287
Query: 229 SLRKAALSGNPRFFLGTDSAPHWDSSKESSC-------GCAGIYTA 267
+L + G + TD APH + +E C G G+ TA
Sbjct: 288 ALIEGLKDGTIDA-IATDHAPH--AREEKECEFEAAPFGITGLETA 330
>gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed.
Length = 444
Score = 31.0 bits (71), Expect = 0.44
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 13/84 (15%)
Query: 174 HITTSNGIDYVNNATNIAGSIT----VHHLIINRNAIFHD--GLNPHYYCLPIPKREKHR 227
HI+T+ + N IT VHHL + D L C P K R
Sbjct: 236 HISTAKELSLFENGPLAEKRITAEVCVHHLWFDD----SDYARLGNLIKCNPAIKTASDR 291
Query: 228 LSLRKAALSGNPRF-FLGTDSAPH 250
+LR+A R + TD APH
Sbjct: 292 EALRQALADD--RIDVIATDHAPH 313
>gnl|CDD|177786 PLN00192, PLN00192, aldehyde oxidase.
Length = 1344
Score = 29.7 bits (67), Expect = 1.1
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 19 GEILKTVLRDTAKN----FRRALV---MPNIDPPIITVDDA 52
G+ + V+ DT K+ A+V N++PPI+TV+DA
Sbjct: 674 GQRIALVVADTQKHADMAANLAVVEYDTENLEPPILTVEDA 714
>gnl|CDD|181418 PRK08417, PRK08417, dihydroorotase; Provisional.
Length = 386
Score = 29.7 bits (67), Expect = 1.3
Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 19/182 (10%)
Query: 169 KIILEHITTSNGIDYVNNAT----NIAGSITVHHLIINRNAIFHDGLNPHYYCLPIPKRE 224
K++ + + ++ ++ + +++HHLI++ +A + N P + +
Sbjct: 197 KVLFDTLALPRSLELLDKFKSEGEKLLKEVSIHHLILDDSAC--ENFNTAAKLNPPLRSK 254
Query: 225 KHRLSLRKAALSGNPRFFLGTDSAPHWDSSKESSCGCA--GIYTARNALNCLAQIFEEEN 282
+ RL+L +A G FL + + +S K+ + A GI + + +E
Sbjct: 255 EDRLALLEALKEGKID-FLTSLHSAKSNSKKDLAFDEAAFGIDSICEYFSLCYTYLVKEG 313
Query: 283 --KLENLESFVSINGATWYGIPVNTRKISLKRREQPIIFDEKITTSTGSITIFNPIFPLY 340
L F S N A + G+ +I + + ++FD TI + F LY
Sbjct: 314 IITWSELSRFTSYNPAQFLGLNSG--EIEVGKEADLVLFDPN------ESTIIDDNFSLY 365
Query: 341 WE 342
Sbjct: 366 SG 367
>gnl|CDD|183100 PRK11365, ssuC, alkanesulfonate transporter permease subunit;
Provisional.
Length = 263
Score = 28.7 bits (64), Expect = 2.2
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 108 NSHHGIRNIDRVMPVLERMETI-GMPLCIH 136
N+ HGIRNIDR + + R + G+PL IH
Sbjct: 142 NTWHGIRNIDRGLVEMARSYGLSGIPLFIH 171
>gnl|CDD|179461 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 459
Score = 28.7 bits (65), Expect = 2.3
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 172 LEHITTSNGIDYVNN--ATN 189
LE I T NGID++N+ ATN
Sbjct: 317 LERIGTINGIDFINDSKATN 336
>gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated.
Length = 444
Score = 28.7 bits (65), Expect = 2.5
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 174 HITTSNGIDYVNNATNIAGS-ITVHHLIINRNAIFHDGL------NPHYYCLPIPKREK- 225
H++T+ ID++ + ++A +T HHL + + + L NP P R+
Sbjct: 234 HVSTAEEIDFLADHKDVATVEVTPHHLTLAAPECY-ERLGTLAQMNP-------PIRDAR 285
Query: 226 HRLSLRKAALSGNPRFFLGTDSAPH 250
HR L + G LG+D APH
Sbjct: 286 HRDGLWRGVRQGVVDV-LGSDHAPH 309
>gnl|CDD|177533 PHA03119, PHA03119, helicase-primase primase subunit; Provisional.
Length = 1085
Score = 28.0 bits (62), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 184 VNNATNIAGSITVHHLIINRNAIFHDGL 211
V + + IA SI + INRN +F+ GL
Sbjct: 631 VKSTSGIASSIPSSQMYINRNELFNGGL 658
>gnl|CDD|182695 PRK10747, PRK10747, putative protoheme IX biogenesis protein;
Provisional.
Length = 398
Score = 27.7 bits (62), Expect = 4.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 46 IITVDDACAYRQRILNALPPEYDFSPLMTIYLTETTDPDDVEKGFTSQLVQ 96
+I DD +Q IL+ L +YD ++ I +T +P+ +EK Q+ Q
Sbjct: 273 LIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ 323
>gnl|CDD|148611 pfam07103, DUF1365, Protein of unknown function (DUF1365). This
family consists of several bacterial and plant proteins
of around 250 residues in length. The function of this
family is unknown.
Length = 244
Score = 27.1 bits (61), Expect = 6.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 214 HYYCLPIPKREKHRLSLRKA 233
H Y LP+ RL + KA
Sbjct: 130 HSYLLPVDDGGPDRLQVDKA 149
>gnl|CDD|179523 PRK02999, PRK02999, malate synthase G; Provisional.
Length = 726
Score = 27.1 bits (61), Expect = 7.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 110 HHGIRNIDRVMPVLERM 126
HG+ ++VM L+RM
Sbjct: 648 RHGVVTEEQVMESLKRM 664
>gnl|CDD|181042 PRK07575, PRK07575, dihydroorotase; Provisional.
Length = 438
Score = 26.9 bits (60), Expect = 7.9
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 18/122 (14%)
Query: 190 IAGSITVHHLIINRNAIFHDG----LNPHYYCLPIPKREKHRLSLRKAALSGNPRFFLGT 245
+ +T HL++N +A G +NP P+ + + +L +A G F + T
Sbjct: 250 VTAEVTPQHLLLNTDAYERIGTLAQMNP-----PL-RSPEDNEALWQALRDGVIDF-IAT 302
Query: 246 DSAPHWDSSK-----ESSCGCAGIYTARNALNCLAQIFEEENKLENLESFVSINGATWYG 300
D APH K S G G+ T+ + L + + + ++S A YG
Sbjct: 303 DHAPHTLEEKAQPYPNSPSGMPGVETSLPLM--LTAAMRGKCTVAQVVRWMSTAVARAYG 360
Query: 301 IP 302
IP
Sbjct: 361 IP 362
>gnl|CDD|172294 PRK13756, PRK13756, tetracycline repressor protein TetR;
Provisional.
Length = 205
Score = 26.8 bits (59), Expect = 8.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 19 GEILKTVLRDTAKNFRRALVM 39
GE + LR+ AK+FR AL+
Sbjct: 72 GESWQDFLRNNAKSFRCALLS 92
>gnl|CDD|163592 TIGR03880, KaiC_arch_3, KaiC domain protein, AF_0351 family. This
model represents a rather narrowly distributed archaeal
protein family in which members have a single copy of
the KaiC domain. This stands in contrast to the
circadian clock protein KaiC itself, with two copies of
the domain. Members are expected to have weak ATPase
activity, by homology to the
autokinase/autophosphorylase KaiC itself.
Length = 224
Score = 26.6 bits (59), Expect = 8.8
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 101 YFAGSTTNS----HHGIRNIDRVM---------PVLERMETIGMPLCIHGEILNQDIDIF 147
Y G TT S + G++N ++ M +L ++ G L + +++ + I
Sbjct: 25 YGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDL---EDYIDKSLYIV 81
Query: 148 DRELMFIDKILDPLRNKLPNL 168
+ L+ ++N+LP L
Sbjct: 82 RLDPSDFKTSLNRIKNELPIL 102
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.139 0.424
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,946,193
Number of extensions: 390188
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 25
Length of query: 349
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 255
Effective length of database: 3,963,321
Effective search space: 1010646855
Effective search space used: 1010646855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)