RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781013|ref|YP_003065426.1| phage-associated protein
[Candidatus Liberibacter asiaticus str. psy62]
(302 letters)
>gnl|CDD|147893 pfam05984, Cytomega_UL20A, Cytomegalovirus UL20A protein. This
family consists of several Cytomegalovirus UL20A
proteins. UL20A is thought to be a glycoprotein.
Length = 102
Score = 30.9 bits (69), Expect = 0.47
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 148 RTITVEEITKMADGSNISPENVVEQIKKPVRFDSDSEFATLESQLVK-GFKSMPPQLTKE 206
R++ EE ADG I+ + +++ + D D +++ L+ G S P+ +E
Sbjct: 28 RSVENEEPATSADGDGITLQGELKESQDGETPDDDEDYSGDYDVLITDGDGSEHPEPVEE 87
Query: 207 F--QEAQVQIKKDSA 219
+ + Q K+D
Sbjct: 88 KNDEHKEDQAKEDEK 102
>gnl|CDD|131882 TIGR02835, spore_sigmaE, RNA polymerase sigma-E factor. Members of
this family comprise the Firmicutes lineage endospore
formation-specific sigma factor SigE, also called
SpoIIGB and sigma-29. As characterized in Bacillus
subtilis, this protein is synthesized as a precursor,
specifically in the mother cell compartment, and must
cleaved by the SpoIIGA protein to be made active.
Length = 234
Score = 29.8 bits (67), Expect = 0.96
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 193 VKGFKSMPPQLTKEFQEAQVQ--IKKDSAIARSIQESNIMRFAYSNRSFWVTIVWITIIV 250
+ G +++PP LT E +EA +Q + D + ++ E N+ Y R F T + I +V
Sbjct: 24 IGGSEALPPPLTGEEEEALLQKLTQGDESAKSTLIERNLRLVVYIARKFENTGIGIEDLV 83
Query: 251 A 251
+
Sbjct: 84 S 84
>gnl|CDD|184098 PRK13507, PRK13507, formate--tetrahydrofolate ligase; Provisional.
Length = 587
Score = 29.3 bits (66), Expect = 1.4
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 130 EENKTWRRLYDPNDPNTNRTITVEEITKM---ADGSNISPENVVEQIKKPVRFDSDSEFA 186
E ++ LY P R +E I + ADG + +P E K R +SD E A
Sbjct: 458 NEPNDFKFLYPLEMPLRER---IETIAREVYGADGVSYTP----EAEAKLKRLESDPETA 510
Query: 187 TLESQLVK 194
+ +VK
Sbjct: 511 DFGTCMVK 518
>gnl|CDD|180631 PRK06585, holA, DNA polymerase III subunit delta; Reviewed.
Length = 343
Score = 28.7 bits (65), Expect = 1.8
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 156 TKMADGSNISPENVVEQIKKPVRFDSDSEFATLESQLVKGFKSMPPQLTK---EFQEAQV 212
K+ +G S E + ++ PV F E L + + +L + Q A++
Sbjct: 263 LKVENGK--SAEQAIASLRPPVFF---KRKPDFEKAL-RRWS--LERLLRALERLQAAEL 314
Query: 213 QIKKDSAIARSIQESNIMRFA 233
+++ A+A +I ++ A
Sbjct: 315 DCRRNPALADAIARRVLLSIA 335
>gnl|CDD|180063 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 28.7 bits (65), Expect = 1.9
Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 32/129 (24%)
Query: 165 SPENVVEQIKKPVRFDSDSEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKDSAIARSI 224
E +++ FD FA P +E +E A R
Sbjct: 16 LEEEEEPELRAQQAFDEQEAFA-------------PAAPDEEEEEEGELEAAVEAALRP- 61
Query: 225 QESNIMRFAYSNRSFWVTIVW--ITIIVAFLLTQIINS--NVFAQLCESKYIATVVSLSA 280
RS W ++W + ++ + ++ Q + + F + S ++ ++
Sbjct: 62 -----------KRSLWRKLLWGGLGLLGSLVVGQAVQWLRDAFQR---SDWLGLGAAVVG 107
Query: 281 IICGFWAIV 289
+ +
Sbjct: 108 ALIVLAGLG 116
>gnl|CDD|179102 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 28.6 bits (65), Expect = 2.0
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 21/85 (24%)
Query: 212 VQIKKDSAIARSIQESNIMRFAYSNRSFWVTIVWITIIVAFLLTQIINSNVFAQLCESKY 271
V++ K +++ NR VT V ++I++ + T + + +
Sbjct: 257 VRLGKGGNPMKAL-----------NRGLIVTAV-LSIVLTYFATYWLLGDGADG-----F 299
Query: 272 IATVVSLSAIICGFWAIVGKGLFGV 296
+ A++ G +V L G+
Sbjct: 300 TWLNLFG-AVLIG---LVVGALIGL 320
>gnl|CDD|180110 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase;
Provisional.
Length = 425
Score = 28.6 bits (65), Expect = 2.0
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 7/20 (35%)
Query: 84 HPIEVIMDLSFRIFPKIANQ 103
HP EV MD+SF ANQ
Sbjct: 352 HPSEV-MDMSF------ANQ 364
>gnl|CDD|180943 PRK07360, PRK07360, FO synthase subunit 2; Reviewed.
Length = 371
Score = 27.9 bits (63), Expect = 3.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 149 TITVEEITKMADGSN---ISPENVVEQIK----KPVRFDSDSE 184
T+ E ITKMA S +S E + IK P + D+ E
Sbjct: 323 TLMEEHITKMAGASGGTYMSVEELQWMIKSIGRIPKQRDTLYE 365
>gnl|CDD|181993 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta;
Reviewed.
Length = 552
Score = 27.5 bits (62), Expect = 4.5
Identities = 11/37 (29%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 148 RTITVEEITKMADGSNISPENVVEQIKKPVRFDSDSE 184
R ++VE I K+ G ++S E ++E +++ +R+D++
Sbjct: 277 REVSVEYINKLL-GIDLSAEEIIELLER-MRYDAEIG 311
>gnl|CDD|162332 TIGR01385, TFSII, transcription elongation factor S-II. This model
represents eukaryotic transcription elongation factor
S-II. This protein allows stalled RNA transcription
complexes to perform a cleavage of the nascent RNA and
restart at the newly generated 3-prime end.
Length = 299
Score = 27.1 bits (60), Expect = 6.4
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 114 NKYQSHSTEQLQEIVQEENKTWRRLYDPNDP-----NTNRTITVEEITKMADGSNISPEN 168
NK + H E + ++ ++ K+W+++ D N N TV E S +
Sbjct: 50 NKLRKHPNEDISKLAKKIIKSWKKVVDKNKSDHPGGNPEDKTTVGESVNSVKQEAKSQSD 109
Query: 169 VVEQIKKP 176
+EQ K
Sbjct: 110 KIEQPKYV 117
>gnl|CDD|168296 PRK05926, PRK05926, hypothetical protein; Provisional.
Length = 370
Score = 26.7 bits (59), Expect = 7.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 1 MKKRTFTQTNPPYSTIAVANFFIDKGVKYSIPIDHLKIQQFIYLTHC 47
++K + PP S IAVA F+D ++L I+ ++L C
Sbjct: 274 LRKMGSRHSIPPASIIAVARLFLDNFPNIKALWNYLGIEVALHLLSC 320
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.134 0.397
Gapped
Lambda K H
0.267 0.0633 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,870,199
Number of extensions: 301172
Number of successful extensions: 766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 766
Number of HSP's successfully gapped: 25
Length of query: 302
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 209
Effective length of database: 3,984,929
Effective search space: 832850161
Effective search space used: 832850161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)