RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781013|ref|YP_003065426.1| phage-associated protein [Candidatus Liberibacter asiaticus str. psy62] (302 letters) >2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} (A:1-97) Length = 97 Score = 26.8 bits (59), Expect = 3.4 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 7/72 (9%) Query: 94 FRIFP------KIANQEIGEIMESIWNKYQS-HSTEQLQEIVQEENKTWRRLYDPNDPNT 146 F F I + + ++M + S + + WR L D N Sbjct: 14 FDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINK 73 Query: 147 NRTITVEEITKM 158 + ++ EE M Sbjct: 74 DDVVSWEEYLAM 85 >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* (G:330-491) Length = 162 Score = 26.7 bits (58), Expect = 4.0 Identities = 10/63 (15%), Positives = 23/63 (36%) Query: 118 SHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPV 177 SH +++ ++ ++ D T + +IS V I+ PV Sbjct: 96 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 155 Query: 178 RFD 180 +++ Sbjct: 156 KWE 158 >1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} (A:1-95) Length = 95 Score = 26.1 bits (57), Expect = 5.4 Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 15/95 (15%) Query: 114 NKYQSHSTEQLQEIV------QEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPE 167 E ++E+ ++E + W + + + P+ + P Sbjct: 3 KSNSKLKPEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPT 62 Query: 168 NVVEQIKKPVRFDSD-------SEFATLESQLVKG 195 + FD + SEF S +G Sbjct: 63 KFATFVFN--VFDENKDGRIEFSEFIQALSVTSRG 95 >3dxl_A Allergen AED A 2; odorant-binding protein, all-helical, secreted; 1.30A {Aedes aegypti} PDB: 3dy9_A 3dye_A* 3dzt_A* (A:148-303) Length = 156 Score = 25.7 bits (56), Expect = 6.8 Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 2/54 (3%) Query: 125 QEIVQEENKTWRRLYDPNDPNTNRTI--TVEEITKMADGSNISPENVVEQIKKP 176 +++ R+ +D ++ I + + + E V K Sbjct: 18 GSDKRQQLCQIRQYTVLDDALFKEHTDCVMKGIRYITKDNQLDVEEVKRDFKLV 71 >1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, JCSG, protein structure initiative, PSI; HET: NAD; 2.30A {Caenorhabditis elegans} (A:1-74,A:461-537) Length = 151 Score = 25.6 bits (56), Expect = 7.9 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Query: 159 ADGSNISP---ENVVEQIKKPVRFDSDSEFATLES 190 ADG +++P + + + KPV + D E+ S Sbjct: 54 ADGLHVTPKEHDYSFKTVLKPVSYKVDDEYKPFHS 88 >2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural genomics consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} (A:1-147) Length = 147 Score = 25.6 bits (56), Expect = 8.0 Identities = 4/51 (7%), Positives = 13/51 (25%), Gaps = 8/51 (15%) Query: 119 HSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENV 169 E + TW + + + + ++ + P + Sbjct: 48 TDVESVLPFRDSSTPTWINITGIHRT--------DVVQRVGEFFGTHPLVL 90 >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A (A:1-181,A:369-407) Length = 220 Score = 25.7 bits (56), Expect = 8.7 Identities = 7/63 (11%), Positives = 22/63 (34%), Gaps = 1/63 (1%) Query: 165 SPENVVEQIKKPVRFDSD-SEFATLESQLVKGFKSMPPQLTKEFQEAQVQIKKDSAIARS 223 S + +++ K +F ++ + P + + E + D +++ Sbjct: 88 SLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQN 147 Query: 224 IQE 226 +Q Sbjct: 148 VQY 150 >2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} (A:98-185) Length = 88 Score = 25.7 bits (56), Expect = 8.8 Identities = 7/91 (7%), Positives = 18/91 (19%), Gaps = 19/91 (20%) Query: 126 EIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQIKKPVRFDSD--- 182 ++ L+ D + + + +EE + +V Sbjct: 1 DLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNV---ITDGGKV 57 Query: 183 ----SEFATL---------ESQLVKGFKSMP 200 + + L P Sbjct: 58 TFDLNRYKELYYRLLTSPAADAGNTLMGQKP 88 >1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:) Length = 110 Score = 25.4 bits (55), Expect = 9.4 Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 8/102 (7%) Query: 114 NKYQSHSTEQLQEIVQEENKTWRRLYDPNDPNTNRTITVEEITKMADGSNISPENVVEQI 173 + S ++ I +E+ + + + P+ + I+ S +S + I Sbjct: 3 LQDNSSYPDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPE-LSYI 61 Query: 174 KKPVRFDSD-----SEFATLESQLVKGFKSMPPQLTKEFQEA 210 + D D EF +V P + Sbjct: 62 WELSDADCDGALTLPEFCAAFHLIVARKNGYPLP--EGLPPT 101 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.134 0.397 Gapped Lambda K H 0.267 0.0679 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,288,017 Number of extensions: 100952 Number of successful extensions: 327 Number of sequences better than 10.0: 1 Number of HSP's gapped: 327 Number of HSP's successfully gapped: 23 Length of query: 302 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 214 Effective length of database: 1,981,209 Effective search space: 423978726 Effective search space used: 423978726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.7 bits)